Psyllid ID: psy14616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEIYNHPK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHcccccEEEcccHHHHHHHccccHHHHHEEcccEEEEEEEcccccccccccEEEEEEEccEEEEEccHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHHHHccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEEEEEEcccHHHHEEEcccEEEEEEEccccccccEEEEEEEEEccccEEEcccHHHHHHHHHHcccccEEEEEHHHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVGQLQARRAAGVVLGMIKEGKIAGRAILlagqpgtgKTAIAMGLAqalgpdtpftsmagseiyslemnkteeetEMIEGEVVEIQierpatglgskvgkltmkttemETSYDLGAKMIEAIGtayssphgipidlldrmviiptqpyqdEEIQAILKIRLVKNerneiynhpk
Flexible Loop (DISEMBL)
MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEiqierpatglgskvgkltmKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRlvknerneiynhpk
Low Complexity Region (SEG)
MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLemnkteeetemiegevveiQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEIYNHPK
Disordered region (IsUnstruct)
*********AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG*******************************VVEIQIE*********VGKLTM****METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN**********
Disordered Region (DISOPRED)
MVG*LQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE********TEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN**********
Disordered Region (DISEMBL)
********RAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEIYNHPK
Disordered Region (DISPRO)
MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEIY****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLExxxxxxxxxxxxxxxxxxxxxRPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEIYNHPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9WTM5	463	RuvB-like 2 OS=Mus muscul	yes	N/A	0.701	0.263	0.759	8e-52
Q2TBU9	463	RuvB-like 2 OS=Bos taurus	yes	N/A	0.701	0.263	0.759	9e-52
Q9Y230	463	RuvB-like 2 OS=Homo sapie	yes	N/A	0.701	0.263	0.759	9e-52
Q9DE27	462	RuvB-like 2 OS=Xenopus la	N/A	N/A	0.701	0.264	0.729	4e-50
P83571	463	RuvB-like 2 OS=Danio reri	yes	N/A	0.701	0.263	0.715	1e-49
Q29DI0	480	RuvB-like helicase 2 OS=D	yes	N/A	0.701	0.254	0.708	1e-47
Q9V3K3	481	RuvB-like helicase 2 OS=D	yes	N/A	0.701	0.253	0.700	4e-47
Q16TA2	465	RuvB-like helicase 2 OS=A	N/A	N/A	0.701	0.262	0.678	2e-46
Q54UW5	469	RuvB-like helicase 2 OS=D	yes	N/A	0.701	0.260	0.656	1e-43
O94692	465	RuvB-like helicase 2 OS=S	yes	N/A	0.695	0.260	0.627	5e-42

>sp|Q9WTM5|RUVB2_MOUSE RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3

 Score =  202 bits (514), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q2TBU9|RUVB2_BOVIN RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3

 Score =  202 bits (514), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9Y230|RUVB2_HUMAN RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3

 Score =  202 bits (514), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Plays an essential role in oncogenic transformation by MYC and also modulates transcriptional activation by the LEF1/TCF1-CTNNB1 complex. May also inhibit the transcriptional activity of ATF2.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9DE27|RUVB2_XENLA RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 116/137 (84%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL +RRAAGV+L MIKEGKIAGRA+L+AGQPGTGKTAIAMG+AQALG DTPFT++AG
Sbjct: 45  MVGQLASRRAAGVILEMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAQALGSDTPFTAIAG 104

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVE+QI+RPATG G+KVGKLT+KT
Sbjct: 105 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEVQIDRPATGTGAKVGKLTLKT 164

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 165 TEMETIYDLGTKMIESL 181

Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P83571|RUVB2_DANRE RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL +RRAAG++L MIK+G+IAGRA+L+AGQPGTGKTAIAMG+AQ+LGPDTPFT++AG
Sbjct: 46  MVGQLASRRAAGLILEMIKDGQIAGRAVLIAGQPGTGKTAIAMGIAQSLGPDTPFTALAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG G+KVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALSQAFRKAIGVRIKEETEIIEGEVVEIQIDRPATGTGAKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q29DI0|RUVB2_DROPS RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/137 (70%), Positives = 111/137 (81%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQ  ARRAAGVV+ M++EGKIAGR ILLAG+P TGKTAIA+G+AQALG +TPFTSM+G
Sbjct: 42  MVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSG 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEIYSLEM+KTE               EETE+IEGEVVEIQIERPATG G KVGK+T+KT
Sbjct: 102 SEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPATGTGQKVGKVTLKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET+YDLG K+IE  
Sbjct: 162 TEMETNYDLGNKIIECF 178

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9V3K3|RUVB2_DROME RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1

 Score =  187 bits (474), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQ  ARRAAGVV+ M++EGKIAGR ILLAG+P TGKTAIA+G+AQALG +TPFTSM+G
Sbjct: 42  MVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSG 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEIYSLEM+KTE               EETE+IEGEVVEIQIERPA+G G KVGK+T+KT
Sbjct: 102 SEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPASGTGQKVGKVTLKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET+YDLG K+IE  
Sbjct: 162 TEMETNYDLGNKIIECF 178

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q16TA2|RUVB2_AEDAE RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1

 Score =  184 bits (468), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/137 (67%), Positives = 111/137 (81%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQ  ARRAAG+V+ +++EGKIAGR ILLAG+P TGKTAIA+G+AQALG +TPFTSM+G
Sbjct: 42  MVGQKDARRAAGLVVQIVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGNETPFTSMSG 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEIYSLEMNKTE               EETE+IEGEVVEIQI+RPA+G G KVGK+T+KT
Sbjct: 102 SEIYSLEMNKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIDRPASGTGQKVGKVTIKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           T+MET+YDLG K+IE  
Sbjct: 162 TDMETNYDLGNKIIECF 178

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Aedes aegypti (taxid: 7159)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q54UW5|RUVB2_DICDI RuvB-like helicase 2 OS=Dictyostelium discoideum GN=rvb2 PE=1 SV=1

 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 111/137 (81%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQ+ AR+AAG++L MIKEGKIAGRAIL+ G+PGTGKTAIAMG+AQ+LG  TPFT++A 
Sbjct: 42  MVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAA 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+I GEVV+IQI+RPATG G+KVGKLT+KT
Sbjct: 102 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEVICGEVVDIQIDRPATGSGAKVGKLTLKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           T M+  YDLGAKMI+++
Sbjct: 162 TSMDALYDLGAKMIDSL 178

Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O94692|RUVB2_SCHPO RuvB-like helicase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rvb2 PE=1 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 110/137 (80%), Gaps = 16/137 (11%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQ++ARRAAGV+L MI+EG+IAGRAIL+AG P TGKTAIAMG+AQ+LG DTPF +++ 
Sbjct: 41  MVGQVKARRAAGVILKMIQEGRIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSA 100

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SE+YSLEM+KTE               EETE+IEGEVVE+QI+R  TG G+K GKLT+++
Sbjct: 101 SEVYSLEMSKTEALLQALRKSIGVRIKEETEIIEGEVVEVQIDRSITG-GNKQGKLTIRS 159

Query: 106 TEMETSYDLGAKMIEAI 122
           T+MET YDLG KMI+++
Sbjct: 160 TDMETVYDLGTKMIDSL 176

DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes and is involved in DNA repair. Also involved in pre-rRNA processing.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
355717598	454	RuvB-like 2 [Mustela putorius furo]	0.701	0.268	0.759	2e-50
307213226	463	RuvB-like 2 [Harpegnathos saltator]	0.701	0.263	0.766	3e-50
441630533	483	PREDICTED: ruvB-like 2 isoform 2 [Nomasc	0.701	0.252	0.759	3e-50
60652923	464	RuvB-like 2 [synthetic construct]	0.701	0.262	0.759	3e-50
355703755	459	hypothetical protein EGK_10866, partial	0.701	0.265	0.759	3e-50
440906346	459	RuvB-like 2, partial [Bos grunniens mutu	0.701	0.265	0.759	3e-50
114678327	418	PREDICTED: ruvB-like 2 isoform 1 [Pan tr	0.701	0.291	0.759	3e-50
345110630	463	RuvB-like 2 [Sus scrofa]	0.701	0.263	0.759	4e-50
291414995	463	PREDICTED: RuvB-like 2 [Oryctolagus cuni	0.701	0.263	0.759	4e-50
355756021	459	hypothetical protein EGM_09958, partial	0.701	0.265	0.759	4e-50

>gi|355717598|gb|AES05990.1| RuvB-like 2 [Mustela putorius furo]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 118/137 (86%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG+GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGMGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307213226|gb|EFN88721.1| RuvB-like 2 [Harpegnathos saltator]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 116/137 (84%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGV L MIK+GKIAGRAILLAGQPGTGKTAIAMG+AQALGPDTPFTSMAG
Sbjct: 46  MVGQLMARRAAGVTLEMIKDGKIAGRAILLAGQPGTGKTAIAMGMAQALGPDTPFTSMAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEIYSLEM+KTE               EETE+IEGEVVEIQ++RPATG+G KVGKLT+KT
Sbjct: 106 SEIYSLEMSKTEALTQAIRKSIGVRIKEETEIIEGEVVEIQVDRPATGVGVKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMI+++
Sbjct: 166 TEMETIYDLGNKMIDSL 182

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|441630533|ref|XP_003269800.2| PREDICTED: ruvB-like 2 isoform 2 [Nomascus leucogenys]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|60652923|gb|AAX29156.1| RuvB-like 2 [synthetic construct]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|355703755|gb|EHH30246.1| hypothetical protein EGK_10866, partial [Macaca mulatta]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 42  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 102 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 162 TEMETIYDLGTKMIESL 178

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440906346|gb|ELR56616.1| RuvB-like 2, partial [Bos grunniens mutus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 42  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 102 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 162 TEMETIYDLGTKMIESL 178

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114678327|ref|XP_001171968.1| PREDICTED: ruvB-like 2 isoform 1 [Pan troglodytes] gi|395751504|ref|XP_002829573.2| PREDICTED: ruvB-like 2 isoform 1 [Pongo abelii] gi|119572811|gb|EAW52426.1| RuvB-like 2 (E. coli), isoform CRA_a [Homo sapiens] gi|119572815|gb|EAW52430.1| RuvB-like 2 (E. coli), isoform CRA_a [Homo sapiens] gi|193786598|dbj|BAG51921.1| unnamed protein product [Homo sapiens]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 1   MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 60

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 61  SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 120

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 121 TEMETIYDLGTKMIESL 137

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345110630|ref|NP_001230796.1| RuvB-like 2 [Sus scrofa]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291414995|ref|XP_002723741.1| PREDICTED: RuvB-like 2 [Oryctolagus cuniculus]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 166 TEMETIYDLGTKMIESL 182

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355756021|gb|EHH59768.1| hypothetical protein EGM_09958, partial [Macaca fascicularis]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 117/137 (85%), Gaps = 15/137 (10%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 42  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 101

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKT 105
           SEI+SLEM+KTE               EETE+IEGEVVEIQI+RPATG GSKVGKLT+KT
Sbjct: 102 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 161

Query: 106 TEMETSYDLGAKMIEAI 122
           TEMET YDLG KMIE++
Sbjct: 162 TEMETIYDLGTKMIESL 178

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
UNIPROTKB|F1MSD2	463	RUVBL2 "Uncharacterized protei	0.701	0.263	0.635	3.3e-49
UNIPROTKB|E2RTC3	463	RUVBL2 "Uncharacterized protei	0.701	0.263	0.635	3.3e-49
UNIPROTKB|F1PAP9	462	RUVBL2 "Uncharacterized protei	0.701	0.264	0.635	3.3e-49
UNIPROTKB|F1RIP4	463	RUVBL2 "Uncharacterized protei	0.701	0.263	0.635	3.3e-49
MGI|MGI:1342299	463	Ruvbl2 "RuvB-like protein 2" [	0.701	0.263	0.635	3.3e-49
RGD|1306509	463	Ruvbl2 "RuvB-like 2 (E. coli)"	0.701	0.263	0.635	3.3e-49
UNIPROTKB|G3V8T5	463	Ruvbl2 "RuvB-like 2 (E. coli)"	0.701	0.263	0.635	3.3e-49
UNIPROTKB|B3KQ59	418	RUVBL2 "cDNA FLJ32936 fis, clo	0.701	0.291	0.635	4.2e-49
UNIPROTKB|Q9Y230	463	RUVBL2 "RuvB-like 2" [Homo sap	0.701	0.263	0.635	4.2e-49
UNIPROTKB|Q2TBU9	463	RUVBL2 "RuvB-like 2" [Bos taur	0.701	0.263	0.635	5.3e-49

UNIPROTKB|F1MSD2 RUVBL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0071339 "MLL1 complex" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|E2RTC3 RUVBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|F1PAP9 RUVBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0071339 "MLL1 complex" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|F1RIP4 RUVBL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0071339 "MLL1 complex" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

MGI|MGI:1342299 Ruvbl2 "RuvB-like protein 2" [Mus musculus (taxid:10090)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=ISO

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0031011 "Ino80 complex" evidence=ISO

GO:0032508 "DNA duplex unwinding" evidence=ISO

GO:0034644 "cellular response to UV" evidence=ISO

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1306509 Ruvbl2 "RuvB-like 2 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSFGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0003674 "molecular_function" evidence=ND

GO:0003678 "DNA helicase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0031011 "Ino80 complex" evidence=ISO

GO:0032508 "DNA duplex unwinding" evidence=ISO

GO:0034644 "cellular response to UV" evidence=ISO

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISO

UNIPROTKB|G3V8T5 Ruvbl2 "RuvB-like 2 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

UNIPROTKB|B3KQ59 RUVBL2 "cDNA FLJ32936 fis, clone TESTI2007533, highly similar to RuvB-like 2 (EC 3.6.1.-)" [Homo sapiens (taxid:9606)]

 Score = 395 (144.1 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:     1 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 60

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:    61 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 120

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   121 TEMETIYDLGTKMIESL 137

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q9Y230 RUVBL2 "RuvB-like 2" [Homo sapiens (taxid:9606)]

 Score = 395 (144.1 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003678 "DNA helicase activity" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0031011 "Ino80 complex" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IMP

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005622 "intracellular" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0032508 "DNA duplex unwinding" evidence=IDA

UNIPROTKB|Q2TBU9 RUVBL2 "RuvB-like 2" [Bos taurus (taxid:9913)]

 Score = 395 (144.1 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 87/137 (63%), Positives = 98/137 (71%)

Query:     1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
             MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct:    46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query:    61 SEIYSLXXXXXXXXXXXXXXXXXXX---------------QIERPATGLGSKVGKLTMKT 105
             SEI+SL                                  QI+RPATG GSKVGKLT+KT
Sbjct:   106 SEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165

Query:   106 TEMETSYDLGAKMIEAI 122
             TEMET YDLG KMIE++
Sbjct:   166 TEMETIYDLGTKMIESL 182

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043968 "histone H2A acetylation" evidence=ISS

GO:0043967 "histone H4 acetylation" evidence=ISS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043141 "ATP-dependent 5'-3' DNA helicase activity" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WTM5	RUVB2_MOUSE	3, ., 6, ., 4, ., 1, 2	0.7591	0.7011	0.2634	yes	N/A
Q54UW5	RUVB2_DICDI	3, ., 6, ., 4, ., 1, 2	0.6569	0.7011	0.2601	yes	N/A
P0CR28	RUVB2_CRYNJ	3, ., 6, ., 4, ., 1, 2	0.5620	0.6954	0.2613	yes	N/A
Q6CT29	RUVB2_KLULA	3, ., 6, ., 4, ., 1, 2	0.6423	0.6954	0.2591	yes	N/A
Q9Y230	RUVB2_HUMAN	3, ., 6, ., 4, ., 1, 2	0.7591	0.7011	0.2634	yes	N/A
Q6FSF1	RUVB2_CANGA	3, ., 6, ., 4, ., 1, 2	0.6423	0.6954	0.2542	yes	N/A
Q4WKH9	RUVB2_ASPFU	3, ., 6, ., 4, ., 1, 2	0.6058	0.6954	0.2579	yes	N/A
Q5BGK3	RUVB2_EMENI	3, ., 6, ., 4, ., 1, 2	0.6204	0.6954	0.2585	yes	N/A
Q29DI0	RUVB2_DROPS	3, ., 6, ., 4, ., 1, 2	0.7080	0.7011	0.2541	yes	N/A
Q12464	RUVB2_YEAST	3, ., 6, ., 4, ., 1, 2	0.6277	0.6954	0.2569	yes	N/A
Q6BSB8	RUVB2_DEBHA	3, ., 6, ., 4, ., 1, 2	0.6496	0.6954	0.2520	yes	N/A
Q755G5	RUVB2_ASHGO	3, ., 6, ., 4, ., 1, 2	0.6350	0.6954	0.2579	yes	N/A
Q6C3X6	RUVB2_YARLI	3, ., 6, ., 4, ., 1, 2	0.6330	0.7068	0.2639	yes	N/A
Q9V3K3	RUVB2_DROME	3, ., 6, ., 4, ., 1, 2	0.7007	0.7011	0.2536	yes	N/A
O94692	RUVB2_SCHPO	3, ., 6, ., 4, ., 1, 2	0.6277	0.6954	0.2602	yes	N/A
P83571	RUVB2_DANRE	3, ., 6, ., 4, ., 1, 2	0.7153	0.7011	0.2634	yes	N/A
Q4I948	RUVB2_GIBZE	3, ., 6, ., 4, ., 1, 2	0.6204	0.6954	0.2558	yes	N/A
Q2TBU9	RUVB2_BOVIN	3, ., 6, ., 4, ., 1, 2	0.7591	0.7011	0.2634	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	4e-57
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	2e-48
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	2e-13
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	8e-13
TIGR02639	730	TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi	5e-06
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	5e-05
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	6e-05
COG0542	786	COG0542, clpA, ATP-binding subunits of Clp proteas	8e-05
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	1e-04
PRK07773	886	PRK07773, PRK07773, replicative DNA helicase; Vali	3e-04
COG0645	170	COG0645, COG0645, Predicted kinase [General functi	5e-04
PRK06964	342	PRK06964, PRK06964, DNA polymerase III subunit del	0.002
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	0.002
COG0305	435	COG0305, DnaB, Replicative DNA helicase [DNA repli	0.002
pfam01078	207	pfam01078, Mg_chelatase, Magnesium chelatase, subu	0.002
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	0.003
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	0.003
pfam13481	154	pfam13481, AAA_25, AAA domain	0.003
TIGR00665	434	TIGR00665, DnaB, replicative DNA helicase	0.004
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.004
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	0.004
cd00984	242	cd00984, DnaB_C, DnaB helicase C terminal domain	0.004

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score =  183 bits (466), Expect = 4e-57
 Identities = 75/142 (52%), Positives = 99/142 (69%), Gaps = 20/142 (14%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           +VGQ +AR AAGV++ MIKEGKIAGRA+L+AG PGTGKTA+A+ +++ LG DTPF  ++G
Sbjct: 26  LVGQEKAREAAGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFCPISG 85

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQI---ERPATGLGS--KVGK 100
           SE+YSLEM KTE               EE E+ EGEVVE++I   E P +G G   K GK
Sbjct: 86  SEVYSLEMKKTEALTQAFRKAIGVRIKEEKEVYEGEVVELEIEEAENPLSGYGKTIKHGK 145

Query: 101 LTMKTTEMETSYDLGAKMIEAI 122
           +T+KTT+ME +  LG K+ E +
Sbjct: 146 ITLKTTKMEKTLKLGPKIYEQL 167

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score =  162 bits (412), Expect = 2e-48
 Identities = 65/142 (45%), Positives = 89/142 (62%), Gaps = 20/142 (14%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           +VGQ +AR AAGV++ MIK+GK+AGR IL+ G PGTGKTA+AMG+A+ LG D PF +++G
Sbjct: 41  LVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISG 100

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQIERPATGLGS-----KVGK 100
           SEIYSLE+ KTE               E  E+ EGEVVE++I R    L           
Sbjct: 101 SEIYSLEVKKTEALTQALRRAIGVRIKETREVYEGEVVELEIRRARNPLNPYGKVPSGAI 160

Query: 101 LTMKTTEMETSYDLGAKMIEAI 122
           +T+KT + E +  LG ++ E +
Sbjct: 161 ITLKTKDEEKTLRLGPEIAEQL 182

Length = 450

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
           GT   SPHGIP+DLLDR++II T+PY  EEI+ IL+IR
Sbjct: 320 GTDIISPHGIPLDLLDRLLIITTEPYTREEIKQILEIR 357

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 64.7 bits (158), Expect = 8e-13
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
           GT   SPHGIP+DLLDR++II T+PY  EEI+ I++IR
Sbjct: 336 GTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRIR 373

Length = 450

>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 29  LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
           LL G+PG GKTAI  GLA  +        +  ++IYSL+M
Sbjct: 206 LLVGEPGVGKTAIVEGLALRIAEGKVPERLKNAKIYSLDM 245

[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 25  GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVV 83
            + +LL G PGTGKT +A  +A  L  P  PF  +  S++    +        ++     
Sbjct: 19  PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78

Query: 84  EIQIERPAT---------GLGSKVGKLTMKTTEMETSYDLGAKMIEAIG-TAYSSPHGIP 133
             +  +P             G++   L +  T  +   D     +  IG T       + 
Sbjct: 79  LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRV--IGATNRPLLGDLD 136

Query: 134 IDLLDRMVII 143
             L DR+ I 
Sbjct: 137 RALYDRLDIR 146

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)

Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
          +LL G PGTGKT +A  +A+ LG   PF  ++GSE+
Sbjct: 1  LLLYGPPGTGKTTLAKAVAKELG--APFIEISGSEL 34

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 29  LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
           +L G+PG GKTAI  GLAQ +       S+    IYSL++
Sbjct: 195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234

Length = 786

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 1   MVGQLQARRAAGVVLGMIKE----GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT 56
           ++GQ +A+R   +++  ++     G  A + +L  G PGTGKT +A  LA       P  
Sbjct: 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPLL 180

Query: 57  SMAGSEI 63
            +  +E+
Sbjct: 181 LVKATEL 187

Length = 368

>gnl|CDD|236093 PRK07773, PRK07773, replicative DNA helicase; Validated

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 25  GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGE 81
           G+ I++A +P  GKT   +  A+               I+SLEM+K +    ++  E
Sbjct: 217 GQLIIVAARPSMGKTTFGLDFARNCA----IRHRLAVAIFSLEMSKEQLVMRLLSAE 269

Length = 886

>gnl|CDD|223718 COG0645, COG0645, Predicted kinase [General function prediction only]

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 25 GRAILLAGQPGTGKTAIAMGLAQALG 50
          GR +L+ G PG+GK+ +A GLA+ LG
Sbjct: 1  GRLVLVGGLPGSGKSTLARGLAELLG 26

Length = 170

>gnl|CDD|235898 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 27 AILLAGQPGTGKTAIAMGLAQALGPDTP 54
          A+LL GQ G GK   A  LAQ L  +TP
Sbjct: 23 ALLLHGQAGIGKLDFAQHLAQGLLCETP 50

Length = 342

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 28  ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 62
           +LL G PGTGKT +A  +A       PF S++GSE
Sbjct: 219 VLLVGPPGTGKTLLAKAIAGEAE--VPFFSISGSE 251

Length = 638

>gnl|CDD|223382 COG0305, DnaB, Replicative DNA helicase [DNA replication, recombination, and repair]

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 28  ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQI 87
           I++A +PG GKTA+A+ +A     D          I+SLEM++ E+    +      I+ 
Sbjct: 199 IIVAARPGMGKTALALNIALNAAADGRKPVA----IFSLEMSE-EQLVMRLLSSESGIES 253

Query: 88  ERPATG 93
            +  TG
Sbjct: 254 SKLRTG 259

Length = 435

>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 13/68 (19%)

Query: 2  VGQLQARRAAGVVLGMIKEGKIA---GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSM 58
           GQ QA+RA           +IA   G  +L+ G PG+GKT +A  L   L P T   ++
Sbjct: 6  KGQEQAKRAL----------EIAAAGGHNLLMIGPPGSGKTMLAKRLPGILPPLTEQEAL 55

Query: 59 AGSEIYSL 66
            + I+S+
Sbjct: 56 EVTAIHSV 63

Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 21  GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
            KI  + +LL G PGTGKT +A  +A   G   PF S++GS+   +EM
Sbjct: 85  AKIP-KGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDF--VEM 127

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 28  ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72
           +LL G PGTGKT +A   A AL   + F S+ GSE+ S  + ++E
Sbjct: 279 VLLYGPPGTGKTLLA--KAVALESRSRFISVKGSELLSKWVGESE 321

Length = 494

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF 55
            G   LLAG PGTGK+ +A+ LA A+    PF
Sbjct: 31 PRGGLTLLAGAPGTGKSTLALDLAAAVATGRPF 63

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|233080 TIGR00665, DnaB, replicative DNA helicase

 Score = 36.6 bits (86), Expect = 0.004
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)

Query: 28  ILLAGQPGTGKTAIAMGLAQ--ALGPDTPFTSMAGSEIYSLEMNKTE 72
           I+LA +P  GKTA A+ +A+  A+    P         +SLEM+  +
Sbjct: 198 IILAARPSMGKTAFALNIAENAAIKEGKP------VAFFSLEMSAEQ 238

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites [DNA metabolism, DNA replication, recombination, and repair]. Length = 434

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 19/70 (27%), Positives = 26/70 (37%)

Query: 25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVE 84
          G  IL+ G PG+GKT +A  LA+ LGP          E    E+        +   +   
Sbjct: 2  GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61

Query: 85 IQIERPATGL 94
              R    L
Sbjct: 62 SGELRLRLAL 71

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 24 AGRAILLAGQPGTGKTAIAMGLAQALGPD 52
          AG  +LL G PG GKT +A  LA+ALG  
Sbjct: 42 AGGHVLLEGPPGVGKTLLARALARALGLP 70

Length = 329

>gnl|CDD|238484 cd00984, DnaB_C, DnaB helicase C terminal domain

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE 72
          I++A +P  GKTA A+ +A+ +        +     +SLEM+K +
Sbjct: 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVL----FFSLEMSKEQ 56

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.92
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.91
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.91
KOG2004|consensus	906		99.91
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.86
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.86
KOG0730|consensus	693		99.86
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.85
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.84
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.84
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.83
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.83
CHL00195	489	ycf46 Ycf46; Provisional	99.81
KOG0734|consensus	752		99.79
KOG0733|consensus	802		99.79
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.79
KOG2028|consensus	554		99.79
KOG0733|consensus	802		99.78
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.77
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.77
KOG0989|consensus	346		99.77
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.77
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.77
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.77
KOG0731|consensus	774		99.77
KOG0738|consensus	491		99.77
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.76
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.76
KOG0739|consensus	439		99.75
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.75
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.75
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.75
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.75
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.74
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.74
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.74
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.74
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.74
CHL00181	287	cbbX CbbX; Provisional	99.73
KOG1942|consensus	456		99.73
KOG2680|consensus	454		99.73
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.73
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.73
KOG0736|consensus	953		99.73
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.73
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.72
PLN03025	319	replication factor C subunit; Provisional	99.72
PRK13342	413	recombination factor protein RarA; Reviewed	99.72
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.72
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.72
KOG0742|consensus	630		99.72
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.72
KOG0737|consensus	386		99.72
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.71
CHL00176	638	ftsH cell division protein; Validated	99.71
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.71
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.7
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.7
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.7
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.7
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.7
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.69
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.69
KOG0991|consensus	333		99.68
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.68
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.67
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.67
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.67
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.67
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.67
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.66
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.66
PRK13341	725	recombination factor protein RarA/unknown domain f	99.66
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.66
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.66
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.64
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.64
PRK04195	482	replication factor C large subunit; Provisional	99.64
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.63
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.63
KOG0728|consensus	404		99.62
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.62
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.62
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.61
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.61
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.61
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.61
KOG0740|consensus	428		99.61
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.6
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.59
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.59
CHL00206	2281	ycf2 Ycf2; Provisional	99.59
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.58
KOG0652|consensus	424		99.58
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.58
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.58
KOG0727|consensus	408		99.58
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.58
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.57
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.56
PHA02544	316	44 clamp loader, small subunit; Provisional	99.56
PRK12402	337	replication factor C small subunit 2; Reviewed	99.56
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.56
KOG0744|consensus	423		99.55
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.55
KOG0735|consensus	952		99.55
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.54
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.53
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.52
CHL00095	821	clpC Clp protease ATP binding subunit	99.52
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.51
KOG0726|consensus	440		99.5
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.49
PF00004	132	AAA: ATPase family associated with various cellula	99.49
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.49
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.49
KOG0743|consensus	457		99.49
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.49
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.49
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.48
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.47
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.46
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.46
PRK06893	229	DNA replication initiation factor; Validated	99.46
PRK08084	235	DNA replication initiation factor; Provisional	99.45
KOG0729|consensus	435		99.45
PRK10865	857	protein disaggregation chaperone; Provisional	99.44
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.44
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.44
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.43
PRK10865	857	protein disaggregation chaperone; Provisional	99.43
KOG0732|consensus	1080		99.42
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.41
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.41
KOG0651|consensus	388		99.38
CHL00095	821	clpC Clp protease ATP binding subunit	99.38
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.37
KOG0741|consensus	744		99.37
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.35
COG0714	329	MoxR-like ATPases [General function prediction onl	99.34
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.33
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.33
KOG0730|consensus	693		99.32
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.32
PRK08727	233	hypothetical protein; Validated	99.31
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.31
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.3
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.26
PRK06620	214	hypothetical protein; Validated	99.25
PRK13531	498	regulatory ATPase RavA; Provisional	99.25
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.24
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.24
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.24
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.24
PRK05642	234	DNA replication initiation factor; Validated	99.24
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.23
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.23
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.23
PHA02244	383	ATPase-like protein	99.22
KOG2035|consensus	351		99.21
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.21
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.2
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.18
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.17
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.16
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.16
PF07726	131	AAA_3: ATPase family associated with various cellu	99.16
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.15
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.13
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.13
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.13
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.11
PRK12422	445	chromosomal replication initiation protein; Provis	99.09
PRK09087	226	hypothetical protein; Validated	99.09
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.08
PRK04132	846	replication factor C small subunit; Provisional	99.07
KOG0990|consensus	360		99.05
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.04
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.04
smart00350	509	MCM minichromosome maintenance proteins.	99.03
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.03
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.98
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.96
KOG0736|consensus	953		98.9
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	98.89
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.86
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.83
KOG1051|consensus	898		98.83
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.83
PHA00729	226	NTP-binding motif containing protein	98.8
KOG1969|consensus	877		98.78
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.78
KOG0735|consensus	952		98.75
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.74
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.73
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	98.71
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	98.7
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.69
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.67
KOG2227|consensus	529		98.66
PRK11608	326	pspF phage shock protein operon transcriptional ac	98.64
PRK15455	644	PrkA family serine protein kinase; Provisional	98.58
PRK12377	248	putative replication protein; Provisional	98.58
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.56
PRK05022	509	anaerobic nitric oxide reductase transcription reg	98.56
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	98.55
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.54
COG1221	403	PspF Transcriptional regulators containing an AAA-	98.54
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.53
PRK15424	538	propionate catabolism operon regulatory protein Pr	98.51
PRK09862	506	putative ATP-dependent protease; Provisional	98.51
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.51
PRK08116	268	hypothetical protein; Validated	98.5
PRK06835	329	DNA replication protein DnaC; Validated	98.5
smart00382	148	AAA ATPases associated with a variety of cellular	98.49
KOG0745|consensus	564		98.49
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.46
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.46
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.45
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.42
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.42
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.42
PRK08939	306	primosomal protein DnaI; Reviewed	98.42
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	98.42
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	98.41
PRK07952	244	DNA replication protein DnaC; Validated	98.39
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	98.38
PRK08181	269	transposase; Validated	98.38
PRK13765	637	ATP-dependent protease Lon; Provisional	98.37
PF13173	128	AAA_14: AAA domain	98.37
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.37
KOG1514|consensus	767		98.34
PRK00131	175	aroK shikimate kinase; Reviewed	98.29
PRK06921	266	hypothetical protein; Provisional	98.28
KOG0480|consensus	764		98.28
PRK06581	263	DNA polymerase III subunit delta'; Validated	98.27
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.27
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.27
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.26
PRK08118	167	topology modulation protein; Reviewed	98.25
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.25
PRK06526	254	transposase; Provisional	98.23
KOG0478|consensus	804		98.23
PRK14532	188	adenylate kinase; Provisional	98.22
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.22
PRK14531	183	adenylate kinase; Provisional	98.21
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.2
KOG3347|consensus	176		98.19
PRK00625	173	shikimate kinase; Provisional	98.18
PRK03839	180	putative kinase; Provisional	98.17
PRK13947	171	shikimate kinase; Provisional	98.17
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.15
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.13
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	98.13
PRK14530	215	adenylate kinase; Provisional	98.12
KOG1970|consensus	634		98.1
KOG0741|consensus	744		98.09
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.09
PLN02674	244	adenylate kinase	98.09
PRK13949	169	shikimate kinase; Provisional	98.08
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.08
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.08
COG2204	464	AtoC Response regulator containing CheY-like recei	98.08
PLN02200	234	adenylate kinase family protein	98.06
PRK09183	259	transposase/IS protein; Provisional	98.05
PTZ00088	229	adenylate kinase 1; Provisional	98.04
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.03
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.03
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.03
PRK06762	166	hypothetical protein; Provisional	98.02
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.02
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.01
PRK14528	186	adenylate kinase; Provisional	98.01
PRK00279	215	adk adenylate kinase; Reviewed	98.0
PF13245	76	AAA_19: Part of AAA domain	98.0
PRK07261	171	topology modulation protein; Provisional	98.0
KOG2170|consensus	344		98.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.99
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.99
PRK06217	183	hypothetical protein; Validated	97.99
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.98
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.97
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.97
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.97
PRK14527	191	adenylate kinase; Provisional	97.96
PRK13948	182	shikimate kinase; Provisional	97.95
PRK04040	188	adenylate kinase; Provisional	97.94
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.94
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.93
PRK02496	184	adk adenylate kinase; Provisional	97.93
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	97.92
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	97.92
PRK13946	184	shikimate kinase; Provisional	97.92
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.92
PRK06547	172	hypothetical protein; Provisional	97.91
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.91
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.91
PRK06696	223	uridine kinase; Validated	97.91
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.91
PRK14526	211	adenylate kinase; Provisional	97.91
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.91
PHA02624	647	large T antigen; Provisional	97.89
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.89
PRK03731	171	aroL shikimate kinase II; Reviewed	97.89
PRK05973	237	replicative DNA helicase; Provisional	97.88
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.88
PRK05057	172	aroK shikimate kinase I; Reviewed	97.88
KOG0477|consensus	854		97.87
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	97.87
PRK05541	176	adenylylsulfate kinase; Provisional	97.86
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.86
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.86
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.85
PLN02459	261	probable adenylate kinase	97.85
PHA02774	613	E1; Provisional	97.84
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	97.84
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.83
PRK14529	223	adenylate kinase; Provisional	97.82
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.82
PRK10646	153	ADP-binding protein; Provisional	97.82
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	97.82
KOG0482|consensus	721		97.82
PRK08233	182	hypothetical protein; Provisional	97.81
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.81
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.81
PRK15115	444	response regulator GlrR; Provisional	97.79
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.79
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.78
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	97.77
PRK00889	175	adenylylsulfate kinase; Provisional	97.76
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.76
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.75
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.75
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.75
PHA02530	300	pseT polynucleotide kinase; Provisional	97.74
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.73
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.73
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.73
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.72
PF05729	166	NACHT: NACHT domain	97.72
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
PRK14700	300	recombination factor protein RarA; Provisional	97.71
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	97.71
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.7
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.7
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.69
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.69
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.69
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.69
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	97.69
PRK01184	184	hypothetical protein; Provisional	97.68
PRK14737	186	gmk guanylate kinase; Provisional	97.68
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.68
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.67
PRK13975	196	thymidylate kinase; Provisional	97.67
PRK07667	193	uridine kinase; Provisional	97.67
PRK13808	333	adenylate kinase; Provisional	97.66
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.66
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.65
PLN02199	303	shikimate kinase	97.65
PRK04182	180	cytidylate kinase; Provisional	97.65
PRK12338	319	hypothetical protein; Provisional	97.65
PRK10416	318	signal recognition particle-docking protein FtsY;	97.65
PRK00300	205	gmk guanylate kinase; Provisional	97.65
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.64
PRK04328	249	hypothetical protein; Provisional	97.64
PRK13851	344	type IV secretion system protein VirB11; Provision	97.63
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.63
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.62
PRK06067	234	flagellar accessory protein FlaH; Validated	97.62
PRK09825	176	idnK D-gluconate kinase; Provisional	97.61
KOG0481|consensus	729		97.59
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.58
PRK05480	209	uridine/cytidine kinase; Provisional	97.58
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.58
COG1855	604	ATPase (PilT family) [General function prediction	97.58
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.56
PRK14738	206	gmk guanylate kinase; Provisional	97.55
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.55
COG0802	149	Predicted ATPase or kinase [General function predi	97.55
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.55
PLN02165	334	adenylate isopentenyltransferase	97.54
KOG1051|consensus	898		97.54
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.54
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.53
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.53
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.53
PRK10536	262	hypothetical protein; Provisional	97.53
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.52
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.52
KOG2543|consensus	438		97.52
PTZ00202	550	tuzin; Provisional	97.51
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.51
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.5
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.5
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.5
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.5
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.49
PRK10365	441	transcriptional regulatory protein ZraR; Provision	97.49
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.49
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.48
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.48
PRK06761	282	hypothetical protein; Provisional	97.48
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.48
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.47
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.46
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.46
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.45
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.45
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.44
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.44
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.43
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.43
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.43
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.43
KOG3354|consensus	191		97.42
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.42
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.42
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.42
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	97.42
PRK04132	846	replication factor C small subunit; Provisional	97.42
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.42
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.41
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.4
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	97.4
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.4
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.4
PRK11823	446	DNA repair protein RadA; Provisional	97.39
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.39
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.39
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.38
PRK14974	336	cell division protein FtsY; Provisional	97.37
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.37
PTZ00301	210	uridine kinase; Provisional	97.37
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.36
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.36
PRK11545	163	gntK gluconate kinase 1; Provisional	97.36
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.35
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.35
PRK08356	195	hypothetical protein; Provisional	97.35
PF13479	213	AAA_24: AAA domain	97.35
PRK03846	198	adenylylsulfate kinase; Provisional	97.34
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.34
PLN02840	421	tRNA dimethylallyltransferase	97.34
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.33
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.33
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	97.33
PRK05439	311	pantothenate kinase; Provisional	97.33
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.32
TIGR00376	637	DNA helicase, putative. The gene product may repre	97.32
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.32
PRK13764	602	ATPase; Provisional	97.32
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.32
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.31
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.31
PRK09302	509	circadian clock protein KaiC; Reviewed	97.3
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.3
PRK12337	475	2-phosphoglycerate kinase; Provisional	97.29
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.29
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.28
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.28
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.28
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.28
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.27
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.27
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.27
PRK00023	225	cmk cytidylate kinase; Provisional	97.26
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.25
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.25
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	97.24
cd01128	249	rho_factor Transcription termination factor rho is	97.24
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.23
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.23
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.22
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.22
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.22
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.21
PRK15453	290	phosphoribulokinase; Provisional	97.21
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.2
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.2
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.2
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.19
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.19
PRK10867	433	signal recognition particle protein; Provisional	97.19
KOG1803|consensus	649		97.18
PRK00698	205	tmk thymidylate kinase; Validated	97.18
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.18
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.17
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.17
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.17
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.16
PRK04296	190	thymidine kinase; Provisional	97.16
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.16
PRK12608	380	transcription termination factor Rho; Provisional	97.16
PLN02796	347	D-glycerate 3-kinase	97.15
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.15
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.15
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	97.14
PRK13695	174	putative NTPase; Provisional	97.14

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.7e-25  Score=179.32  Aligned_cols=155  Identities=29%  Similarity=0.426  Sum_probs=127.4

Q ss_pred             CchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc--
Q psy14616          2 VGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--   78 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (174)
                      +|.+++|+++-.+++.-+ .....+.-++|+||||||||++++.+|+.+|++  |++++-+.+        .|++++.  
T Consensus       326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR~sLGGv--------rDEAEIRGH  395 (782)
T COG0466         326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVRISLGGV--------RDEAEIRGH  395 (782)
T ss_pred             cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEEEecCcc--------ccHHHhccc
Confidence            688999977665553332 233445688899999999999999999999976  777776554        3555553  


Q ss_pred             --------c--------------CcEEEEEEeccCCCC-C----------CccceeEEEeccchhhhccccccchhhhcc
Q psy14616         79 --------E--------------GEVVEIQIERPATGL-G----------SKVGKLTMKTTEMETSYDLGAKMIEAIGTA  125 (174)
Q Consensus        79 --------~--------------~~i~~~~id~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  125 (174)
                              |              ..++++|||++.+++ +          |++||..|.+++++..+|+++++|  +||+
T Consensus       396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF--iaTA  473 (782)
T COG0466         396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF--IATA  473 (782)
T ss_pred             cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE--Eeec
Confidence                    2              257778999996555 2          578999999999999999999999  8898


Q ss_pred             cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhhhh
Q psy14616        126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI  169 (174)
Q Consensus       126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~~~  169 (174)
                       |....+|.+|++|+.+|+++.|+++|..+|.+++|.+++..+-
T Consensus       474 -Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~  516 (782)
T COG0466         474 -NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEH  516 (782)
T ss_pred             -CccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHc
Confidence             8889999999999999999999999999999999999887654

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.91  E-value=3.6e-25  Score=161.76  Aligned_cols=156  Identities=22%  Similarity=0.291  Sum_probs=117.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhc----CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----
Q psy14616          1 MVGQLQARRAAGVVLGMIKEG----KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g----~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----   72 (174)
                      |||||++++....+.+.+++.    .-.|+++|||||||||||++|+++|.++.  +++..+++..+++..+|...    
T Consensus       123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~l~vkat~liGehVGdgar~Ih  200 (368)
T COG1223         123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPLLLVKATELIGEHVGDGARRIH  200 (368)
T ss_pred             hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--CceEEechHHHHHHHhhhHHHHHH
Confidence            699999999999999999873    33469999999999999999999999987  78999999888887776654    


Q ss_pred             ---hhh-hhccCcEEEEEEeccC-CC-C----CC--ccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcce
Q psy14616         73 ---EET-EMIEGEVVEIQIERPA-TG-L----GS--KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM  140 (174)
Q Consensus        73 ---~~~-~~~~~~i~~~~id~~~-~~-~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~  140 (174)
                         +-+ +..|+.++++|+|.+. +. +    +|  +.-|..  ...++.....-.++.  ||+| |++..++++++|||
T Consensus       201 ely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNAL--LTelDgi~eneGVvt--IaaT-N~p~~LD~aiRsRF  275 (368)
T COG1223         201 ELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNAL--LTELDGIKENEGVVT--IAAT-NRPELLDPAIRSRF  275 (368)
T ss_pred             HHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHH--HHhccCcccCCceEE--Eeec-CChhhcCHHHHhhh
Confidence               112 4468888999999772 22 1    11  111111  112222222233444  6676 89999999999999


Q ss_pred             -eeEecCCCCHHHHHHHHHHHhch
Q psy14616        141 -VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       141 -~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                       .-|+|.-|+++|..+|++.++.+
T Consensus       276 EeEIEF~LP~~eEr~~ile~y~k~  299 (368)
T COG1223         276 EEEIEFKLPNDEERLEILEYYAKK  299 (368)
T ss_pred             hheeeeeCCChHHHHHHHHHHHHh
Confidence             78999999999999999998743

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.91  E-value=3.4e-24  Score=164.71  Aligned_cols=150  Identities=21%  Similarity=0.306  Sum_probs=111.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc--
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (174)
                      +|||+++...-..+.+++++|..+  +++|||||||||||+|+.+|..++..  |..+++...-..++..+.+.++..  
T Consensus        26 ~vGQ~HLlg~~~~lrr~v~~~~l~--SmIl~GPPG~GKTTlA~liA~~~~~~--f~~~sAv~~gvkdlr~i~e~a~~~~~  101 (436)
T COG2256          26 VVGQEHLLGEGKPLRRAVEAGHLH--SMILWGPPGTGKTTLARLIAGTTNAA--FEALSAVTSGVKDLREIIEEARKNRL  101 (436)
T ss_pred             hcChHhhhCCCchHHHHHhcCCCc--eeEEECCCCCCHHHHHHHHHHhhCCc--eEEeccccccHHHHHHHHHHHHHHHh
Confidence            689999998888999999999886  99999999999999999999999854  888888776667777777666332  


Q ss_pred             cCcEEEEEEecc--CCCCCCccceeEEEeccchhhhccccccchhh-hcccCCCCCCCHHhhcceeeEecCCCCHHHHHH
Q psy14616         79 EGEVVEIQIERP--ATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI-GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA  155 (174)
Q Consensus        79 ~~~i~~~~id~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~  155 (174)
                      .|.-.++++|++  +++   .+|...+--.      .-+..++  | |||.|+...++++|+|||+++.|.+++.+++.+
T Consensus       102 ~gr~tiLflDEIHRfnK---~QQD~lLp~v------E~G~iil--IGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~  170 (436)
T COG2256         102 LGRRTILFLDEIHRFNK---AQQDALLPHV------ENGTIIL--IGATTENPSFELNPALLSRARVFELKPLSSEDIKK  170 (436)
T ss_pred             cCCceEEEEehhhhcCh---hhhhhhhhhh------cCCeEEE--EeccCCCCCeeecHHHhhhhheeeeecCCHHHHHH
Confidence            344444444444  355   2332221111      1122223  3 466677799999999999999999999999999


Q ss_pred             HHHHHhchhh
Q psy14616        156 ILKIRLVKNE  165 (174)
Q Consensus       156 il~~~l~~~~  165 (174)
                      ++.+.+..+.
T Consensus       171 ~l~ra~~~~~  180 (436)
T COG2256         171 LLKRALLDEE  180 (436)
T ss_pred             HHHHHHhhhh
Confidence            9999654443

>KOG2004|consensus

Probab=99.91  E-value=2.5e-24  Score=174.77  Aligned_cols=155  Identities=24%  Similarity=0.349  Sum_probs=125.7

Q ss_pred             CchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc--
Q psy14616          2 VGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--   78 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (174)
                      +|.+++|+++-.+.+.-+ .|...+.-++|+||||+|||++++.+|+.||++  |.+++.+.+.        |.++|.  
T Consensus       414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--FfRfSvGG~t--------DvAeIkGH  483 (906)
T KOG2004|consen  414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--FFRFSVGGMT--------DVAEIKGH  483 (906)
T ss_pred             cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--eEEEeccccc--------cHHhhccc
Confidence            688999955555443222 233446788999999999999999999999977  6777766542        333332  


Q ss_pred             --------c--------------CcEEEEEEeccCCCC-C----------CccceeEEEeccchhhhccccccchhhhcc
Q psy14616         79 --------E--------------GEVVEIQIERPATGL-G----------SKVGKLTMKTTEMETSYDLGAKMIEAIGTA  125 (174)
Q Consensus        79 --------~--------------~~i~~~~id~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  125 (174)
                              |              ..++++|+|++.++. +          |++||..|.+++++..+|++.++|  +||+
T Consensus       484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLF--icTA  561 (906)
T KOG2004|consen  484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLF--ICTA  561 (906)
T ss_pred             ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEE--EEec
Confidence                    2              357888999996443 2          578999999999999999999999  8999


Q ss_pred             cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhhhh
Q psy14616        126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI  169 (174)
Q Consensus       126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~~~  169 (174)
                       |....++++|++|+.+|+++.|..+|..+|.+++|.++.+..-
T Consensus       562 -N~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~  604 (906)
T KOG2004|consen  562 -NVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDC  604 (906)
T ss_pred             -cccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHc
Confidence             8999999999999999999999999999999999999887653

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.86  E-value=9.6e-22  Score=142.14  Aligned_cols=151  Identities=25%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh----h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET----E   76 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (174)
                      +|||++++..+..+.++.+....+..|++||||||+||||+|+.+|++++..  +...++..+ .    +..|.+    .
T Consensus        26 fiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~~~sg~~i-~----k~~dl~~il~~   98 (233)
T PF05496_consen   26 FIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FKITSGPAI-E----KAGDLAAILTN   98 (233)
T ss_dssp             S-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC-------SCHHHHHHHHT
T ss_pred             ccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eEeccchhh-h----hHHHHHHHHHh
Confidence            6999999999999888887644445699999999999999999999999955  555554322 1    111222    2


Q ss_pred             hccCc-EEEEEEeccCCCC-C------CccceeEEEec--cchhhhccccccchhhhcccCCCCCCCHHhhcceee-Eec
Q psy14616         77 MIEGE-VVEIQIERPATGL-G------SKVGKLTMKTT--EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVI-IPT  145 (174)
Q Consensus        77 ~~~~~-i~~~~id~~~~~~-~------~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~-i~~  145 (174)
                      ...+. ++++||+++ ++. +      .+.+.+.+...  .-.....+.-.-|.++++| .+...+.++|++||.+ .++
T Consensus        99 l~~~~ILFIDEIHRl-nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT-Tr~g~ls~pLrdRFgi~~~l  176 (233)
T PF05496_consen   99 LKEGDILFIDEIHRL-NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT-TRAGLLSSPLRDRFGIVLRL  176 (233)
T ss_dssp             --TT-EEEECTCCC---HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE-SSGCCTSHCCCTTSSEEEE-
T ss_pred             cCCCcEEEEechhhc-cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee-ccccccchhHHhhcceecch
Confidence            22333 444577776 432 1      12333322211  1111122222224447777 5778999999999954 589


Q ss_pred             CCCCHHHHHHHHHHH
Q psy14616        146 QPYQDEEIQAILKIR  160 (174)
Q Consensus       146 ~~~~~~e~~~il~~~  160 (174)
                      ..|+.+|+.+|+++.
T Consensus       177 ~~Y~~~el~~Iv~r~  191 (233)
T PF05496_consen  177 EFYSEEELAKIVKRS  191 (233)
T ss_dssp             ---THHHHHHHHHHC
T ss_pred             hcCCHHHHHHHHHHH
Confidence            999999999999873

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=6.1e-22  Score=150.39  Aligned_cols=145  Identities=23%  Similarity=0.268  Sum_probs=109.9

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPA   91 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~   91 (174)
                      -|..||+++|||||||||||.||+++|+..+  ..|+.+.++.+..+++|+-.       .-+ +..|..|+++|||.+.
T Consensus       180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg  257 (406)
T COG1222         180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--ATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIG  257 (406)
T ss_pred             cCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhh
Confidence            3777899999999999999999999999998  45999999999988887754       111 4458889999999883


Q ss_pred             CCC------CC-ccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHH
Q psy14616         92 TGL------GS-KVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus        92 ~~~------~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~  160 (174)
                      ...      ++ +.|...+. .+.++.+....++-+  |++| |++..++|||+  .|| ..|+|+.|+.+...+|++.+
T Consensus       258 ~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV--I~AT-NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IH  334 (406)
T COG1222         258 AKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV--IMAT-NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIH  334 (406)
T ss_pred             cccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE--EEec-CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHH
Confidence            332      11 22321111 233455555556555  6666 99999999999  799 88999999999999999998


Q ss_pred             hchhhhhhh
Q psy14616        161 LVKNERNEI  169 (174)
Q Consensus       161 l~~~~~~~~  169 (174)
                      ..+-...+-
T Consensus       335 trkM~l~~d  343 (406)
T COG1222         335 TRKMNLADD  343 (406)
T ss_pred             hhhccCccC
Confidence            877655543

>KOG0730|consensus

Probab=99.86  E-value=6.4e-22  Score=159.78  Aligned_cols=160  Identities=26%  Similarity=0.303  Sum_probs=119.3

Q ss_pred             chHHHHHHHHHHHH--------HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--
Q psy14616          3 GQLQARRAAGVVLG--------MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--   72 (174)
Q Consensus         3 G~~~~~~~l~~~~~--------~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--   72 (174)
                      |+|++|+.++....        +.+=|..|++++|||||||||||++|+++|.+.+++  |..+.+..++++++|+.+  
T Consensus       438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--FlsvkgpEL~sk~vGeSEr~  515 (693)
T KOG0730|consen  438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--FLSVKGPELFSKYVGESERA  515 (693)
T ss_pred             CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--eeeccCHHHHHHhcCchHHH
Confidence            59999988886553        334476788999999999999999999999999854  899999999999999988  


Q ss_pred             -----hhh-hhccCcEEEEEEeccCCCCCCccce-----eEEEeccchhhhccccccchhhhcccCCCCCCCHHhhc--c
Q psy14616         73 -----EET-EMIEGEVVEIQIERPATGLGSKVGK-----LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--R  139 (174)
Q Consensus        73 -----~~~-~~~~~~i~~~~id~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R  139 (174)
                           +.+ ...|..++++|||.+....+.+.+.     +.-....++......++.+  +|+| |++..+++++++  |
T Consensus       516 ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V--iAAT-NRpd~ID~ALlRPGR  592 (693)
T KOG0730|consen  516 IREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV--IAAT-NRPDMIDPALLRPGR  592 (693)
T ss_pred             HHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE--Eecc-CChhhcCHHHcCCcc
Confidence                 233 3347778889999873332111111     1111233444444445555  5555 999999999998  9


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVKNERN  167 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~~~~~  167 (174)
                      + ++|+++.|+.+...+|++.++.+-...
T Consensus       593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~  621 (693)
T KOG0730|consen  593 LDRIIYVPLPDLEARLEILKQCAKKMPFS  621 (693)
T ss_pred             cceeEeecCccHHHHHHHHHHHHhcCCCC
Confidence            9 999999999999999999988664433

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.85  E-value=1.1e-20  Score=143.59  Aligned_cols=72  Identities=65%  Similarity=1.071  Sum_probs=70.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      +|||++++.+...+.+++++|+..++++|+.||||||||.+|.++|++||.++||+.++++.+++.++.+++
T Consensus        41 ~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE  112 (450)
T COG1224          41 LVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTE  112 (450)
T ss_pred             ccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999999999988

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.84  E-value=1.1e-20  Score=145.04  Aligned_cols=72  Identities=68%  Similarity=1.058  Sum_probs=62.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      +|||.++++++..+.+++++|+..++.+||.||||||||.+|.++|++||.+.||+.++++.+++.++.+++
T Consensus        26 lVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE   97 (398)
T PF06068_consen   26 LVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE   97 (398)
T ss_dssp             EES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH
T ss_pred             ccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH
Confidence            589999999999999999999999999999999999999999999999999999999999999999999888

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.84  E-value=3.5e-20  Score=137.10  Aligned_cols=151  Identities=23%  Similarity=0.302  Sum_probs=102.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh----h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET----E   76 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (174)
                      +|||+++|+.+..+..+.+.......|+||+||||.||||+|..+|+++|.+  + ...++.....    ..|.+    .
T Consensus        28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~-k~tsGp~leK----~gDlaaiLt~  100 (332)
T COG2255          28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L-KITSGPALEK----PGDLAAILTN  100 (332)
T ss_pred             hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e-EecccccccC----hhhHHHHHhc
Confidence            5899999999999999999888788999999999999999999999999854  2 2333332221    11222    3


Q ss_pred             hccCcE-EEEEEeccCCCCC------Cc-cceeEEE-eccchh--hhccccccchhhhcccCCCCCCCHHhhcce-eeEe
Q psy14616         77 MIEGEV-VEIQIERPATGLG------SK-VGKLTMK-TTEMET--SYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIP  144 (174)
Q Consensus        77 ~~~~~i-~~~~id~~~~~~~------~~-~~~~~~~-~~~~~~--~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~  144 (174)
                      +.++.| +++||+++....+      .+ .+...+. ...-..  ..++++  |.++++| .+...+..+|++|| .+.+
T Consensus       101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp--FTLIGAT-Tr~G~lt~PLrdRFGi~~r  177 (332)
T COG2255         101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP--FTLIGAT-TRAGMLTNPLRDRFGIIQR  177 (332)
T ss_pred             CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC--eeEeeec-cccccccchhHHhcCCeee
Confidence            345554 5568888722210      01 1111111 111111  123333  4447777 58889999999999 7788


Q ss_pred             cCCCCHHHHHHHHHHHh
Q psy14616        145 TQPYQDEEIQAILKIRL  161 (174)
Q Consensus       145 ~~~~~~~e~~~il~~~l  161 (174)
                      +..|+.+|+.+|+++..
T Consensus       178 lefY~~~eL~~Iv~r~a  194 (332)
T COG2255         178 LEFYTVEELEEIVKRSA  194 (332)
T ss_pred             eecCCHHHHHHHHHHHH
Confidence            99999999999999854

>TIGR00763 lon ATP-dependent protease La

Probab=99.83  E-value=1.1e-19  Score=154.61  Aligned_cols=162  Identities=24%  Similarity=0.348  Sum_probs=111.7

Q ss_pred             CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------~~~~~   70 (174)
                      ++||+++++.+..+..... .+...+.+++|+||||||||++|+++|+.++..  +..++.+....         .+.+.
T Consensus       322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~~~i~~~~~~~~~~i~g~~~~~~g~  399 (775)
T TIGR00763       322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--FVRFSLGGVRDEAEIRGHRRTYVGA  399 (775)
T ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--eEEEeCCCcccHHHHcCCCCceeCC
Confidence            5799999988776554332 233344589999999999999999999999854  55555433211         01111


Q ss_pred             h----h---hhhhhccCcEEEEEEeccCCCC-CC----------ccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616         71 T----E---EETEMIEGEVVEIQIERPATGL-GS----------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI  132 (174)
Q Consensus        71 ~----~---~~~~~~~~~i~~~~id~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  132 (174)
                      .    .   ..+....+.++++|+|++..+. ++          +.++..|.+.++....++++.+|  |+|+ |....+
T Consensus       400 ~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~--I~Tt-N~~~~i  476 (775)
T TIGR00763       400 MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF--IATA-NSIDTI  476 (775)
T ss_pred             CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE--EEec-CCchhC
Confidence            0    0   1122234477888999985432 11          12233455555556667777777  7677 888999


Q ss_pred             CHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616        133 PIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERN  167 (174)
Q Consensus       133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~  167 (174)
                      +++|++||.+|.|++|+.+++.+|+++++.++.+.
T Consensus       477 ~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~  511 (775)
T TIGR00763       477 PRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALE  511 (775)
T ss_pred             CHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988665544

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.83  E-value=2.5e-19  Score=151.80  Aligned_cols=163  Identities=25%  Similarity=0.365  Sum_probs=119.3

Q ss_pred             CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hh--------hh
Q psy14616          1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EM--------NK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~--------~~   70 (174)
                      .+|++.+|+++..+..... .+...+..++|+||||+|||++++.+|+.++..  +..++.+..... ++        +.
T Consensus       324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~~i~~~~~~d~~~i~g~~~~~~g~  401 (784)
T PRK10787        324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YVRMALGGVRDEAEIRGHRRTYIGS  401 (784)
T ss_pred             ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEEcCCCCCHHHhccchhccCCC
Confidence            4799999988876665333 233345689999999999999999999999855  555554432110 11        11


Q ss_pred             hh-------hhhhhccCcEEEEEEeccCCCC-C----------CccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616         71 TE-------EETEMIEGEVVEIQIERPATGL-G----------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI  132 (174)
Q Consensus        71 ~~-------~~~~~~~~~i~~~~id~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  132 (174)
                      ..       ..+....+.++++|+|++.... +          ++.++..|.+.++...+++++.+|  |||+ |.. .+
T Consensus       402 ~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~--i~Ta-N~~-~i  477 (784)
T PRK10787        402 MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF--VATS-NSM-NI  477 (784)
T ss_pred             CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE--EEcC-CCC-CC
Confidence            00       0111223457888999984432 1          466788999999999999999999  8877 554 69


Q ss_pred             CHHhhcceeeEecCCCCHHHHHHHHHHHhchhhhhhh
Q psy14616        133 PIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI  169 (174)
Q Consensus       133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~~~~~  169 (174)
                      +++|++||.+|.|.+|+.+|+.+|+++++.++...+.
T Consensus       478 ~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~  514 (784)
T PRK10787        478 PAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERN  514 (784)
T ss_pred             CHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHh
Confidence            9999999999999999999999999999987665543

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.81  E-value=1.1e-19  Score=146.55  Aligned_cols=160  Identities=18%  Similarity=0.160  Sum_probs=109.1

Q ss_pred             CCchHHHHHHHHHHHHH-----HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh---
Q psy14616          1 MVGQLQARRAAGVVLGM-----IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE---   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-----~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---   72 (174)
                      |.|.+.+|+.+......     .+-|..+++++||+||||||||++|+++|..++  .++..++.+.+++.++++.+   
T Consensus       230 vgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~~~l~~~~l~~~~vGese~~l  307 (489)
T CHL00195        230 IGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPLLRLDVGKLFGGIVGESESRM  307 (489)
T ss_pred             hcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEEEhHHhcccccChHHHHH
Confidence            45888888776653322     223556679999999999999999999999998  56888888887777776654   


Q ss_pred             ----hhh-hhccCcEEEEEEeccCCCCC---CccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhc--ce-e
Q psy14616         73 ----EET-EMIEGEVVEIQIERPATGLG---SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--RM-V  141 (174)
Q Consensus        73 ----~~~-~~~~~~i~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~-~  141 (174)
                          ..+ ...|+.++++|+|+++.+..   +......+....+....+....++ .++|+ |++..+++++++  || .
T Consensus       308 ~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~-vIaTT-N~~~~Ld~allR~GRFD~  385 (489)
T CHL00195        308 RQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF-VVATA-NNIDLLPLEILRKGRFDE  385 (489)
T ss_pred             HHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE-EEEec-CChhhCCHHHhCCCcCCe
Confidence                222 23467788899998855321   111111111111111112222333 15555 899999999985  99 8


Q ss_pred             eEecCCCCHHHHHHHHHHHhchh
Q psy14616        142 IIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       142 ~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +++++.|+.++..+|++.++.+.
T Consensus       386 ~i~v~lP~~~eR~~Il~~~l~~~  408 (489)
T CHL00195        386 IFFLDLPSLEEREKIFKIHLQKF  408 (489)
T ss_pred             EEEeCCcCHHHHHHHHHHHHhhc
Confidence            89999999999999999988664

>KOG0734|consensus

Probab=99.79  E-value=8.1e-20  Score=144.91  Aligned_cols=162  Identities=23%  Similarity=0.303  Sum_probs=117.3

Q ss_pred             CCchHHHHHHHHHHHHHHHh--------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKE--------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~--------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++|++++.+.+++++        |++| +++||.||||||||.|||++|-+.+  ++|....++.+-.++++.--
T Consensus       306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLP-KGVLLvGPPGTGKTlLARAvAGEA~--VPFF~~sGSEFdEm~VGvGA  382 (752)
T KOG0734|consen  306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP-KGVLLVGPPGTGKTLLARAVAGEAG--VPFFYASGSEFDEMFVGVGA  382 (752)
T ss_pred             ccChHHHHHHHHHHHHHhcCcHHhhhccCcCC-CceEEeCCCCCchhHHHHHhhcccC--CCeEeccccchhhhhhcccH
Confidence            46899999999999999986        5655 9999999999999999999999888  77888887776555554322


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCC-Ccc----ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh--
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLG-SKV----GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--  137 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--  137 (174)
                             ..+ ...|+.|+++|||.+..+.. .+.    |.+.=...+++.+......++  |++| |.+..++++|.  
T Consensus       383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv--igAT-Nfpe~LD~AL~RP  459 (752)
T KOG0734|consen  383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV--IGAT-NFPEALDKALTRP  459 (752)
T ss_pred             HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE--Eecc-CChhhhhHHhcCC
Confidence                   222 33588899999998844431 111    111101112233332234444  5555 99999999999  


Q ss_pred             cce-eeEecCCCCHHHHHHHHHHHhchhhhhh
Q psy14616        138 DRM-VIIPTQPYQDEEIQAILKIRLVKNERNE  168 (174)
Q Consensus       138 sR~-~~i~~~~~~~~e~~~il~~~l~~~~~~~  168 (174)
                      .|| ..|.++.|+..=..+||..++.+....+
T Consensus       460 GRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~  491 (752)
T KOG0734|consen  460 GRFDRHVTVPLPDVRGRTEILKLYLSKIPLDE  491 (752)
T ss_pred             CccceeEecCCCCcccHHHHHHHHHhcCCccc
Confidence            799 8899999998889999999998766554

>KOG0733|consensus

Probab=99.79  E-value=3.8e-19  Score=142.89  Aligned_cols=155  Identities=21%  Similarity=0.230  Sum_probs=113.9

Q ss_pred             chHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhh
Q psy14616          3 GQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEE   74 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~   74 (174)
                      |+++++.+|.....+-        +-|..++.++|||||||||||.+|+++|.+.+  ..|+.+.+-.++.+|+|+.+-.
T Consensus       515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag--~NFisVKGPELlNkYVGESErA  592 (802)
T KOG0733|consen  515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG--ANFISVKGPELLNKYVGESERA  592 (802)
T ss_pred             cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc--CceEeecCHHHHHHHhhhHHHH
Confidence            4788887766544221        23666689999999999999999999999998  4489999999999999998722


Q ss_pred             h--------hhccCcEEEEEEeccCCCCCCccce--eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHhh--cc
Q psy14616         75 T--------EMIEGEVVEIQIERPATGLGSKVGK--LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DR  139 (174)
Q Consensus        75 ~--------~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR  139 (174)
                      .        ...|+.|+++|+|.+....+++...  -.+..   .+++...+...+.+  |++| |+|..++|+++  .|
T Consensus       593 VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v--iaAT-NRPDiIDpAiLRPGR  669 (802)
T KOG0733|consen  593 VRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV--IAAT-NRPDIIDPAILRPGR  669 (802)
T ss_pred             HHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE--Eeec-CCCcccchhhcCCCc
Confidence            1        2248899999999996665433221  11111   22333333344444  5555 99999999999  79


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      + ..+++..|+.+|...||+....
T Consensus       670 lDk~LyV~lPn~~eR~~ILK~~tk  693 (802)
T KOG0733|consen  670 LDKLLYVGLPNAEERVAILKTITK  693 (802)
T ss_pred             cCceeeecCCCHHHHHHHHHHHhc
Confidence            9 7888889999999999998775

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.79  E-value=3.3e-19  Score=142.37  Aligned_cols=148  Identities=21%  Similarity=0.211  Sum_probs=92.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----------------------eee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----------------------TSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----------------------~~~   58 (174)
                      ||||+++.   ..+..++++++.+ +.+||+||||||||++|+++|+.++|..+.                      ..+
T Consensus        20 vVGQe~iv---~~L~~~i~~~ri~-ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEI   95 (484)
T PRK14956         20 VIHQDLAI---GALQNALKSGKIG-HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEI   95 (484)
T ss_pred             HhChHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceee
Confidence            68999999   4566667888865 779999999999999999999999875321                      111


Q ss_pred             cccccc-hhhhhhhhhhhhhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC
Q psy14616         59 AGSEIY-SLEMNKTEEETEMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG  131 (174)
Q Consensus        59 ~~~~~~-~~~~~~~~~~~~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~  131 (174)
                      +...-. ..++..+.+.....  .+   .++++|+|.+ +.   +.++..++..+     +- .+.+|  |.++ +.+..
T Consensus        96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-s~---~A~NALLKtLE-----EPp~~viF--ILaT-te~~k  163 (484)
T PRK14956         96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-TD---QSFNALLKTLE-----EPPAHIVF--ILAT-TEFHK  163 (484)
T ss_pred             chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-CH---HHHHHHHHHhh-----cCCCceEE--Eeec-CChhh
Confidence            111000 00111111111111  12   3555677766 33   22222222111     11 23444  4444 46789


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++++++|||+.+.|.+++.+++.+++++...++
T Consensus       164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~E  196 (484)
T PRK14956        164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIE  196 (484)
T ss_pred             ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999876543

>KOG2028|consensus

Probab=99.79  E-value=1e-18  Score=133.59  Aligned_cols=149  Identities=18%  Similarity=0.263  Sum_probs=104.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhhhhh--
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEETEM--   77 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--   77 (174)
                      +|||+++...-..+...+++++.|  .++|+||||||||++|+.++.-... ...|+.++...--..++..+.+.+..  
T Consensus       140 yvGQ~hlv~q~gllrs~ieq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~  217 (554)
T KOG2028|consen  140 YVGQSHLVGQDGLLRSLIEQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEK  217 (554)
T ss_pred             hcchhhhcCcchHHHHHHHcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHH
Confidence            589999998888899999999998  9999999999999999999986532 23467777665555555555433321  


Q ss_pred             -ccCcEEEEEEecc--CCCCCCccceeEEEeccchhhhccccccchhh-hcccCCCCCCCHHhhcceeeEecCCCCHHHH
Q psy14616         78 -IEGEVVEIQIERP--ATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI-GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEI  153 (174)
Q Consensus        78 -~~~~i~~~~id~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~  153 (174)
                       +-++-.+++||++  |++   .+|..++--.      .-+...+  | |||.|+...++.+|+|||.++.+.+++.+++
T Consensus       218 ~l~krkTilFiDEiHRFNk---sQQD~fLP~V------E~G~I~l--IGATTENPSFqln~aLlSRC~VfvLekL~~n~v  286 (554)
T KOG2028|consen  218 SLTKRKTILFIDEIHRFNK---SQQDTFLPHV------ENGDITL--IGATTENPSFQLNAALLSRCRVFVLEKLPVNAV  286 (554)
T ss_pred             hhhcceeEEEeHHhhhhhh---hhhhccccee------ccCceEE--EecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence             2333444445544  355   3333322211      1112222  3 4666777999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy14616        154 QAILKIRLV  162 (174)
Q Consensus       154 ~~il~~~l~  162 (174)
                      ..||.+.+.
T Consensus       287 ~~iL~raia  295 (554)
T KOG2028|consen  287 VTILMRAIA  295 (554)
T ss_pred             HHHHHHHHH
Confidence            999999543

>KOG0733|consensus

Probab=99.78  E-value=1.1e-18  Score=140.39  Aligned_cols=155  Identities=24%  Similarity=0.255  Sum_probs=109.0

Q ss_pred             chHHHHHHHHHHHHHHH-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh---
Q psy14616          3 GQLQARRAAGVVLGMIK-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE---   72 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---   72 (174)
                      |.+.....+..+...++       -|..|++++||+||||||||.+|+++|.+++  ++|..+++.++++-..|+.+   
T Consensus       194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf~~isApeivSGvSGESEkki  271 (802)
T KOG0733|consen  194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPFLSISAPEIVSGVSGESEKKI  271 (802)
T ss_pred             ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--CceEeecchhhhcccCcccHHHH
Confidence            45666655555554444       3777899999999999999999999999999  78999999888887766666   


Q ss_pred             ----hhh-hhccCcEEEEEEeccCCCCCCccc----e-----eEEEeccchhhhccccccchhhhcccCCCCCCCHHhh-
Q psy14616         73 ----EET-EMIEGEVVEIQIERPATGLGSKVG----K-----LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL-  137 (174)
Q Consensus        73 ----~~~-~~~~~~i~~~~id~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~-  137 (174)
                          +.+ ...|+.++++|||.+..+.+..+.    .     +...+.-.....+-.++++  |++| |+|..++|+|+ 
T Consensus       272 RelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlV--IgAT-nRPDslDpaLRR  348 (802)
T KOG0733|consen  272 RELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLV--IGAT-NRPDSLDPALRR  348 (802)
T ss_pred             HHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEE--EecC-CCCcccCHHHhc
Confidence                223 335888999999998655422111    0     1111110000001123344  5666 99999999999 


Q ss_pred             -cce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        138 -DRM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       138 -sR~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                       .|| ..|-+.-|++.+..+||+....
T Consensus       349 aGRFdrEI~l~vP~e~aR~~IL~~~~~  375 (802)
T KOG0733|consen  349 AGRFDREICLGVPSETAREEILRIICR  375 (802)
T ss_pred             cccccceeeecCCchHHHHHHHHHHHh
Confidence             799 7888988999999999988654

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.77  E-value=7.4e-19  Score=145.21  Aligned_cols=147  Identities=20%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------------   65 (174)
                      ||||++++   ..+.+.+++|+.+ +.+||+||+|||||++|+.+|+.++|........|+.|..               
T Consensus        18 ivGQe~vv---~~L~~~l~~~rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~iei   93 (647)
T PRK07994         18 VVGQEHVL---TALANALDLGRLH-HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEI   93 (647)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceee
Confidence            68999999   5566677888876 7789999999999999999999998853211112222210               


Q ss_pred             --------hhhhhhhhhhhhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCC
Q psy14616         66 --------LEMNKTEEETEMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPH  130 (174)
Q Consensus        66 --------~~~~~~~~~~~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~  130 (174)
                              .++..+.+.....  .|   .++++|+|.+ +.   ..++..++      +...+  ++.|  |.++ +++.
T Consensus        94 daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-s~---~a~NALLK------tLEEPp~~v~F--IL~T-t~~~  160 (647)
T PRK07994         94 DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNALLK------TLEEPPEHVKF--LLAT-TDPQ  160 (647)
T ss_pred             cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-CH---HHHHHHHH------HHHcCCCCeEE--EEec-CCcc
Confidence                    1111111111111  12   3455677766 33   22332222      22222  2334  3344 4677


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||+.++|.+++.+++.+.|+..+..+
T Consensus       161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e  194 (647)
T PRK07994        161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE  194 (647)
T ss_pred             ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999876443

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=4.6e-19  Score=145.20  Aligned_cols=147  Identities=18%  Similarity=0.218  Sum_probs=93.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe-----eeeccccc------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF-----TSMAGSEI------------   63 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~-----~~~~~~~~------------   63 (174)
                      ||||++++   ..+.+++++++.+ |.+||+||+|||||++|+.+|+.++|..+-     ..-.|+.|            
T Consensus        18 VIGQe~vv---~~L~~al~~gRLp-HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp   93 (700)
T PRK12323         18 LVGQEHVV---RALTHALEQQRLH-HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV   93 (700)
T ss_pred             HcCcHHHH---HHHHHHHHhCCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence            69999999   5666667888876 778999999999999999999999873210     00011111            


Q ss_pred             --chh---------hhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcc
Q psy14616         64 --YSL---------EMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTA  125 (174)
Q Consensus        64 --~~~---------~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~  125 (174)
                        +..         ++.++.+.....     ...++++|.|.+ +.   ..++..++      +.+.  .++.|  |.++
T Consensus        94 DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-s~---~AaNALLK------TLEEPP~~v~F--ILaT  161 (700)
T PRK12323         94 DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-TN---HAFNAMLK------TLEEPPEHVKF--ILAT  161 (700)
T ss_pred             cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-CH---HHHHHHHH------hhccCCCCceE--EEEe
Confidence              110         011111111111     124555677766 33   22332222      2222  23344  4444


Q ss_pred             cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       +.+..++++++|||+.+.|..++.+++.++|++.+.++
T Consensus       162 -tep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E  199 (700)
T PRK12323        162 -TDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE  199 (700)
T ss_pred             -CChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc
Confidence             57889999999999999999999999999999876543

>KOG0989|consensus

Probab=99.77  E-value=4.8e-19  Score=132.25  Aligned_cols=147  Identities=18%  Similarity=0.215  Sum_probs=90.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----eeecccccchhhhhhhh--hh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----TSMAGSEIYSLEMNKTE--EE   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~   74 (174)
                      ++||++++   ..+.+.+..+..|  ++|||||||||||++|+++|++|+++..+    ...+.++..+..+....  +-
T Consensus        38 ~~gQe~vV---~~L~~a~~~~~lp--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~f  112 (346)
T KOG0989|consen   38 LAGQEHVV---QVLKNALLRRILP--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNF  112 (346)
T ss_pred             hcchHHHH---HHHHHHHhhcCCc--eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCH
Confidence            57999999   4555555555555  99999999999999999999999874322    22233332222211111  11


Q ss_pred             hhh---------c---c-CcEEEEEEeccCCCCCCccceeEEEeccchhhh-ccc-cccchhhhcccCCCCCCCHHhhcc
Q psy14616         75 TEM---------I---E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSY-DLG-AKMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        75 ~~~---------~---~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                      +.+         .   + ..++++|-|.+.+..    +..      +..+. +.+ ++.|   +.-+|..+.+++++.||
T Consensus       113 akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda----q~a------Lrr~mE~~s~~trF---iLIcnylsrii~pi~SR  179 (346)
T KOG0989|consen  113 AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA----QAA------LRRTMEDFSRTTRF---ILICNYLSRIIRPLVSR  179 (346)
T ss_pred             HHHhhccccccCCCCCcceEEEEechhhhhHHH----HHH------HHHHHhccccceEE---EEEcCChhhCChHHHhh
Confidence            111         0   1 234555666663321    111      11111 222 2333   23336788999999999


Q ss_pred             eeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        140 MVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       140 ~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      |+.+.|+++.++++.+.|+..-.++.
T Consensus       180 C~KfrFk~L~d~~iv~rL~~Ia~~E~  205 (346)
T KOG0989|consen  180 CQKFRFKKLKDEDIVDRLEKIASKEG  205 (346)
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHHhC
Confidence            99999999999999998888765543

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.77  E-value=1.5e-18  Score=141.49  Aligned_cols=159  Identities=22%  Similarity=0.301  Sum_probs=107.7

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|+++++..+..+...++.       |..+++++||+||||||||++|+++|..++  .+++.++.+.+.+...+... 
T Consensus        57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~~~~g~~~~  134 (495)
T TIGR01241        57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVEMFVGVGAS  134 (495)
T ss_pred             hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCeeeccHHHHHHHHhcccHH
Confidence            57999999888887776653       344568999999999999999999999987  55777777666554443322 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCc--cce---eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSK--VGK---LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~--~~~---~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            ..+ ...|+.++++|+|.+....+..  ...   .....   ..++......+.++  |++| |++..++++++
T Consensus       135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v--I~aT-n~~~~ld~al~  211 (495)
T TIGR01241       135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV--IAAT-NRPDVLDPALL  211 (495)
T ss_pred             HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE--EEec-CChhhcCHHHh
Confidence                  222 2346778889999884332110  000   00000   11111112223334  5666 89999999999


Q ss_pred             c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +  || ..++++.|+.++..+|++.++.+.
T Consensus       212 r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~  241 (495)
T TIGR01241       212 RPGRFDRQVVVDLPDIKGREEILKVHAKNK  241 (495)
T ss_pred             cCCcceEEEEcCCCCHHHHHHHHHHHHhcC
Confidence            6  88 789999999999999999987554

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=8.9e-19  Score=147.50  Aligned_cols=146  Identities=17%  Similarity=0.233  Sum_probs=91.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc-----------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI-----------------   63 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~-----------------   63 (174)
                      ||||++++   ..|.+++..++.+ +.+||+||||||||++|+++|+.++|........|+.|                 
T Consensus        18 IIGQe~Iv---~~LknaI~~~rl~-HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi   93 (944)
T PRK14949         18 MVGQSHVL---HALTNALTQQRLH-HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV   93 (944)
T ss_pred             hcCcHHHH---HHHHHHHHhCCCC-eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence            68999999   5566777888876 67799999999999999999999987521100011111                 


Q ss_pred             -----c-hhhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         64 -----Y-SLEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        64 -----~-~~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                           . ..++..+.+.....+  |   .++++|+|.+ +.   ..++..++      +... + +..|  |.++ +...
T Consensus        94 dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-T~---eAqNALLK------tLEEPP~~vrF--ILaT-Te~~  160 (944)
T PRK14949         94 DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-SR---SSFNALLK------TLEEPPEHVKF--LLAT-TDPQ  160 (944)
T ss_pred             ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-CH---HHHHHHHH------HHhccCCCeEE--EEEC-CCch
Confidence                 0 011111111111111  2   3455566666 32   22222222      2222 2 2333  3344 4667


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .++++++|||++++|.+++.+++.+.|++.+..
T Consensus       161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~  193 (944)
T PRK14949        161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ  193 (944)
T ss_pred             hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence            799999999999999999999999999987654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.77  E-value=4.4e-19  Score=147.06  Aligned_cols=147  Identities=21%  Similarity=0.236  Sum_probs=91.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch--------------h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------L   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------~   66 (174)
                      ||||+++++   .+.+++++++.+ |.+||+||+|||||++++++|+.++|+.......|+.|.+              .
T Consensus        18 VIGQe~Vv~---~L~~aL~~gRL~-HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI   93 (830)
T PRK07003         18 LVGQEHVVR---ALTHALDGGRLH-HAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM   93 (830)
T ss_pred             HcCcHHHHH---HHHHHHhcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence            689999995   555566788765 7789999999999999999999998753221112221110              0


Q ss_pred             ---------hhhhhhhhhhhc----c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         67 ---------EMNKTEEETEMI----E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ---------~~~~~~~~~~~~----~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                               ++..+.+.....    . ..++++|+|.+ +.   ..++..      ..+.+. + +..|  |.++ +...
T Consensus        94 DAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-T~---~A~NAL------LKtLEEPP~~v~F--ILaT-td~~  160 (830)
T PRK07003         94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-TN---HAFNAM------LKTLEEPPPHVKF--ILAT-TDPQ  160 (830)
T ss_pred             cccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC-CH---HHHHHH------HHHHHhcCCCeEE--EEEE-CChh
Confidence                     000000111001    1 12344566655 22   112221      112222 2 3444  4455 5788


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++|+|||+.|.|.+++.+++.++|++.+.++
T Consensus       161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E  194 (830)
T PRK07003        161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE  194 (830)
T ss_pred             hccchhhhheEEEecCCcCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999977554

>KOG0731|consensus

Probab=99.77  E-value=1e-18  Score=144.72  Aligned_cols=161  Identities=23%  Similarity=0.297  Sum_probs=119.6

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |.|.+++++.|..+.+++++       |-..|+++||+||||||||.||+++|-+.|  +||+.++++++..+..+.-. 
T Consensus       313 VAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--VPF~svSGSEFvE~~~g~~as  390 (774)
T KOG0731|consen  313 VAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSVSGSEFVEMFVGVGAS  390 (774)
T ss_pred             ccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--CceeeechHHHHHHhcccchH
Confidence            57999999999999999987       444579999999999999999999999998  88999999988877665521 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCC---C-----c-cceeEEEeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLG---S-----K-VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~---~-----~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                            ..+ ...|..++++|||......+   .     + .+.+.=....++.......+++  +|+| |++..++++|
T Consensus       391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~--~a~t-nr~d~ld~al  467 (774)
T KOG0731|consen  391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIV--LAAT-NRPDILDPAL  467 (774)
T ss_pred             HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEE--Eecc-CCccccCHHh
Confidence                  111 33477888899998732221   0     0 0111001122333333344555  5666 9999999999


Q ss_pred             h--cce-eeEecCCCCHHHHHHHHHHHhchhhh
Q psy14616        137 L--DRM-VIIPTQPYQDEEIQAILKIRLVKNER  166 (174)
Q Consensus       137 ~--sR~-~~i~~~~~~~~e~~~il~~~l~~~~~  166 (174)
                      +  .|| ..|+++.|+.....+|+..++.+...
T Consensus       468 lrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~  500 (774)
T KOG0731|consen  468 LRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL  500 (774)
T ss_pred             cCCCccccceeccCCchhhhHHHHHHHhhccCC
Confidence            9  899 88999999999999999999877665

>KOG0738|consensus

Probab=99.77  E-value=5.7e-19  Score=135.53  Aligned_cols=161  Identities=21%  Similarity=0.239  Sum_probs=117.2

Q ss_pred             CCchHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|.+++|+.|....       ++.+..+.|=+++|++||||||||.||+++|-+.+  ..|..++.+.+.+++-|+.+.
T Consensus       214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~--tTFFNVSsstltSKwRGeSEK  291 (491)
T KOG0738|consen  214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG--TTFFNVSSSTLTSKWRGESEK  291 (491)
T ss_pred             hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc--CeEEEechhhhhhhhccchHH
Confidence            578889997766533       44556666778999999999999999999999998  558888999999988888773


Q ss_pred             h-------hhh-ccCcEEEEEEeccCCCCCCc---cceeEEEeccchhhh------ccccccchhhhcccCCCCCCCHHh
Q psy14616         74 E-------TEM-IEGEVVEIQIERPATGLGSK---VGKLTMKTTEMETSY------DLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        74 ~-------~~~-~~~~i~~~~id~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       +.. .|.-|+++|||.+.+..+.+   +..-.++...+.+..      +....+|  +.+++|-|=.|+++|
T Consensus       292 lvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~Vm--VLAATN~PWdiDEAl  369 (491)
T KOG0738|consen  292 LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVM--VLAATNFPWDIDEAL  369 (491)
T ss_pred             HHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEE--EEeccCCCcchHHHH
Confidence            3       222 37788889999985554322   122334433322222      2244566  345559999999999


Q ss_pred             hcce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LDRM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~sR~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++|| ..|+++-|+.+....+++..+..-.
T Consensus       370 rRRlEKRIyIPLP~~~~R~~Li~~~l~~~~  399 (491)
T KOG0738|consen  370 RRRLEKRIYIPLPDAEARSALIKILLRSVE  399 (491)
T ss_pred             HHHHhhheeeeCCCHHHHHHHHHHhhcccc
Confidence            9999 7888888999999988888775433

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.76  E-value=2.9e-18  Score=138.52  Aligned_cols=160  Identities=22%  Similarity=0.247  Sum_probs=102.1

Q ss_pred             CCchHHHHHHHHHHHHH--------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC--------CCeeeecccccc
Q psy14616          1 MVGQLQARRAAGVVLGM--------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD--------TPFTSMAGSEIY   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~--------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~--------~~~~~~~~~~~~   64 (174)
                      |.|++..++.+......        -+-|..+++++|||||||||||++|+++|+.++..        ..|..+....+.
T Consensus       184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl  263 (512)
T TIGR03689       184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELL  263 (512)
T ss_pred             cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhc
Confidence            45788888666654432        12355667899999999999999999999998643        223444444455


Q ss_pred             hhhhhhhhh-------hhhh-----ccCcEEEEEEeccCCCCCCccce---eEEE---eccchhhhccccccchhhhccc
Q psy14616         65 SLEMNKTEE-------ETEM-----IEGEVVEIQIERPATGLGSKVGK---LTMK---TTEMETSYDLGAKMIEAIGTAY  126 (174)
Q Consensus        65 ~~~~~~~~~-------~~~~-----~~~~i~~~~id~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~i~~~~  126 (174)
                      +.+.+..+.       .+..     .+..++++|+|.++...+.....   ..+.   ...++......+.++  |++| 
T Consensus       264 ~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV--I~AT-  340 (512)
T TIGR03689       264 NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV--IGAS-  340 (512)
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE--Eecc-
Confidence            544444331       1111     35567888999875432111000   0000   011222222344444  5666 


Q ss_pred             CCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        127 SSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       127 ~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      |++..++|++++  || ..|+|+.|+.++..+|++.++.+
T Consensus       341 N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~  380 (512)
T TIGR03689       341 NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD  380 (512)
T ss_pred             CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence            899999999997  99 78999999999999999998754

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.76  E-value=2.4e-18  Score=129.72  Aligned_cols=161  Identities=20%  Similarity=0.218  Sum_probs=96.4

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcC---CceEEEEcCCCCcHHHHHHHHHHHhC-----CCCCeeeecccccch
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIA---GRAILLAGQPGTGKTAIAMGLAQALG-----PDTPFTSMAGSEIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~---~~~~ll~GppG~GKT~la~~la~~l~-----~~~~~~~~~~~~~~~   65 (174)
                      +||++++|+++..+..+++.       |..+   ..+++|+||||||||++|+++|+.+.     ....++.+++.++.+
T Consensus         8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~   87 (261)
T TIGR02881         8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG   87 (261)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh
Confidence            58999999999887766632       3221   35899999999999999999998762     123455566666555


Q ss_pred             hhhhhhhhh-h----hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC----CCCCCCHHh
Q psy14616         66 LEMNKTEEE-T----EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----SPHGIPIDL  136 (174)
Q Consensus        66 ~~~~~~~~~-~----~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~l  136 (174)
                      .+.++.... .    ....+.++++|+|.+..+.+.+.+.- .....+....+....++. +++...    ....++|++
T Consensus        88 ~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~-~i~~Ll~~~e~~~~~~~v-ila~~~~~~~~~~~~~p~L  165 (261)
T TIGR02881        88 EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKE-AIDTLVKGMEDNRNEFVL-ILAGYSDEMDYFLSLNPGL  165 (261)
T ss_pred             hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHH-HHHHHHHHHhccCCCEEE-EecCCcchhHHHHhcChHH
Confidence            554443311 1    12245667778887732211010000 000001111111222211 222211    123478999


Q ss_pred             hcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        137 LDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       137 ~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++|| ..++|++|+.+++.+++++.+..
T Consensus       166 ~sRf~~~i~f~~~~~~el~~Il~~~~~~  193 (261)
T TIGR02881       166 RSRFPISIDFPDYTVEELMEIAERMVKE  193 (261)
T ss_pred             HhccceEEEECCCCHHHHHHHHHHHHHH
Confidence            9999 78999999999999999987754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>KOG0739|consensus

Probab=99.75  E-value=1.4e-18  Score=129.72  Aligned_cols=158  Identities=20%  Similarity=0.243  Sum_probs=112.5

Q ss_pred             CCchHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |.|.|.++++|....       .+...++.|-+++||||||||||++||+++|-+.|  ..|..++.+++.+.++++.+.
T Consensus       135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STFFSvSSSDLvSKWmGESEk  212 (439)
T KOG0739|consen  135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEK  212 (439)
T ss_pred             hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--CceEEeehHHHHHHHhccHHH
Confidence            468888996665422       33344555668999999999999999999999998  568999999999999999883


Q ss_pred             hh--------hhccCcEEEEEEeccCCCC-CC-ccceeEEEeccchhhhccc----cccchhhhcccCCCCCCCHHhhcc
Q psy14616         74 ET--------EMIEGEVVEIQIERPATGL-GS-KVGKLTMKTTEMETSYDLG----AKMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        74 ~~--------~~~~~~i~~~~id~~~~~~-~~-~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                      ..        +..|..|+++|||.+.... +. +......++.++.+....+    .+++  ++++ |-|-.++.++++|
T Consensus       213 LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV--LgAT-NiPw~LDsAIRRR  289 (439)
T KOG0739|consen  213 LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV--LGAT-NIPWVLDSAIRRR  289 (439)
T ss_pred             HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE--EecC-CCchhHHHHHHHH
Confidence            22        3457889999999873222 11 1222344444433333332    2333  4555 8999999999999


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      | ..|+++-|+......+.+.++.+
T Consensus       290 FekRIYIPLPe~~AR~~MF~lhlG~  314 (439)
T KOG0739|consen  290 FEKRIYIPLPEAHARARMFKLHLGD  314 (439)
T ss_pred             hhcceeccCCcHHHhhhhheeccCC
Confidence            9 78888888887777777766543

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.75  E-value=6e-18  Score=143.63  Aligned_cols=159  Identities=25%  Similarity=0.344  Sum_probs=110.6

Q ss_pred             CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|++.+++.+.....+-        +-|..+++++|||||||||||++|+++|.+++  .+|+.+.+.++.+.++++.+
T Consensus       455 i~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~fi~v~~~~l~~~~vGese  532 (733)
T TIGR01243       455 IGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANFIAVRGPEILSKWVGESE  532 (733)
T ss_pred             cccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHhhcccCcHH
Confidence            578999998877655431        12555678999999999999999999999998  45888888888887777665


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCCcccee---EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGSKVGKL---TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                      .       .+ ...++.++++|+|.+....+.....-   .+..   ..++......+.++  |++| |++..+++++++
T Consensus       533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v--I~aT-n~~~~ld~allR  609 (733)
T TIGR01243       533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV--IAAT-NRPDILDPALLR  609 (733)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE--EEeC-CChhhCCHhhcC
Confidence            2       22 22356788899998854332111100   0001   11222222334444  5666 899999999995


Q ss_pred             --ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        139 --RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       139 --R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                        || ..++++.|+.++..+|++.+..+.
T Consensus       610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~  638 (733)
T TIGR01243       610 PGRFDRLILVPPPDEEARKEIFKIHTRSM  638 (733)
T ss_pred             CCccceEEEeCCcCHHHHHHHHHHHhcCC
Confidence              99 889999999999999998876543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=4.7e-18  Score=133.61  Aligned_cols=148  Identities=23%  Similarity=0.217  Sum_probs=90.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc----------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY----------------   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~----------------   64 (174)
                      ||||++++   ..+.++++.++.+ |.++|+||||+|||++|+++|+.++|......-.++.|.                
T Consensus        18 iiGq~~~~---~~l~~~~~~~~~~-h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~   93 (363)
T PRK14961         18 IIGQKHIV---TAISNGLSLGRIH-HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI   93 (363)
T ss_pred             ccChHHHH---HHHHHHHHcCCCC-eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence            68999999   4556666788765 778999999999999999999999764321111111110                


Q ss_pred             -------hhhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCC
Q psy14616         65 -------SLEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHG  131 (174)
Q Consensus        65 -------~~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  131 (174)
                             ..++....+.....|     ..++++|+|.+ +.   ..++..++.     ..+.+ +..|  |.++ +....
T Consensus        94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-~~---~a~naLLk~-----lEe~~~~~~f--Il~t-~~~~~  161 (363)
T PRK14961         94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-SR---HSFNALLKT-----LEEPPQHIKF--ILAT-TDVEK  161 (363)
T ss_pred             cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-CH---HHHHHHHHH-----HhcCCCCeEE--EEEc-CChHh
Confidence                   011111111111111     13555666665 22   112211111     11112 2233  3344 45677


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +.++++|||+.++|.+++.+++.++++..+.++
T Consensus       162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~  194 (363)
T PRK14961        162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKE  194 (363)
T ss_pred             hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999876553

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=7e-18  Score=137.65  Aligned_cols=158  Identities=24%  Similarity=0.298  Sum_probs=112.4

Q ss_pred             CchHHHHHHHHHHHHHHH--------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          2 VGQLQARRAAGVVLGMIK--------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~--------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      .|.+.++..+........        .+..++.++||+||||||||++|+++|..++  .+|+.+..+++.+.++++++.
T Consensus       245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~~~~l~sk~vGesek  322 (494)
T COG0464         245 GGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVKGSELLSKWVGESEK  322 (494)
T ss_pred             hcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEeeCHHHhccccchHHH
Confidence            356666655554443221        1556678999999999999999999999888  558888888999999998872


Q ss_pred             -------hh-hhccCcEEEEEEeccCCCCCCccc-e-eEEEec---cchhhhccccccchhhhcccCCCCCCCHHhhc--
Q psy14616         74 -------ET-EMIEGEVVEIQIERPATGLGSKVG-K-LTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--  138 (174)
Q Consensus        74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~-~-~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--  138 (174)
                             .+ ...|+.++++|+|.+.+..+.... . ......   .+.......++.+  |++| |++..+++++++  
T Consensus       323 ~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v--i~aT-N~p~~ld~a~lR~g  399 (494)
T COG0464         323 NIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV--IAAT-NRPDDLDPALLRPG  399 (494)
T ss_pred             HHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE--EecC-CCccccCHhhcccC
Confidence                   23 245788999999998555422111 0 111111   1222223334333  5555 999999999999  


Q ss_pred             ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        139 RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      || .++++++|+.++..+|++.++...
T Consensus       400 Rfd~~i~v~~pd~~~r~~i~~~~~~~~  426 (494)
T COG0464         400 RFDRLIYVPLPDLEERLEIFKIHLRDK  426 (494)
T ss_pred             ccceEeecCCCCHHHHHHHHHHHhccc
Confidence            99 899999999999999999998743

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=1.8e-18  Score=140.63  Aligned_cols=148  Identities=16%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------   66 (174)
                      ||||++++   ..+.+++++++.+ +.+||+||||||||++|+++|+.++|........|+.|..+              
T Consensus        18 ivGq~~v~---~~L~~~~~~~~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei   93 (509)
T PRK14958         18 VIGQAPVV---RALSNALDQQYLH-HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV   93 (509)
T ss_pred             hcCCHHHH---HHHHHHHHhCCCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence            68999999   5566666888876 77899999999999999999999987532221222222110              


Q ss_pred             ---------hhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         67 ---------EMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ---------~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                               ++....+.....+  +   .++++|+|.+ +.   +..+.      +..+... + ++.|  |.++ +++.
T Consensus        94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-s~---~a~na------LLk~LEepp~~~~f--Ilat-td~~  160 (509)
T PRK14958         94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-SG---HSFNA------LLKTLEEPPSHVKF--ILAT-TDHH  160 (509)
T ss_pred             cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-CH---HHHHH------HHHHHhccCCCeEE--EEEE-CChH
Confidence                     0111111111111  1   3444566655 32   12221      1112222 2 3334  3344 4678


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      .++++++|||++++|.+++.+++.+.++..+.++.
T Consensus       161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg  195 (509)
T PRK14958        161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN  195 (509)
T ss_pred             hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999888776543

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.74  E-value=8.6e-18  Score=133.15  Aligned_cols=160  Identities=24%  Similarity=0.235  Sum_probs=104.9

Q ss_pred             CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.++.++.+.......        .-|..++.++||+||||||||++|+++|+.++.  +++.++++.+...+.+...
T Consensus       133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~~i~v~~~~l~~~~~g~~~  210 (389)
T PRK03992        133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFIRVVGSELVQKFIGEGA  210 (389)
T ss_pred             hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--CEEEeehHHHhHhhccchH
Confidence            468888887766654331        124456789999999999999999999999984  4778887777665555433


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCCcc------ceeEEE--eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGSKV------GKLTMK--TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                             +.+ ...++.++++++|.++....+..      ....+.  ...+.......+..+  |+++ |++..+++++
T Consensus       211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V--I~aT-n~~~~ld~al  287 (389)
T PRK03992        211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI--IAAT-NRIDILDPAI  287 (389)
T ss_pred             HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE--EEec-CChhhCCHHH
Confidence                   111 22356778889998743321110      000000  000111112223334  6666 8889999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++  || ..|++++|+.++..+|++.++.+..
T Consensus       288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~  319 (389)
T PRK03992        288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN  319 (389)
T ss_pred             cCCccCceEEEECCCCHHHHHHHHHHHhccCC
Confidence            85  89 7899999999999999998875543

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.74  E-value=4.9e-18  Score=134.13  Aligned_cols=144  Identities=19%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc--------CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI--------AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY--------   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~--------~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~--------   64 (174)
                      |+||+++++.   +.+++++++.        .++.+||+||||+|||++|+.+|+.+.|.... ...|+.|.        
T Consensus         7 IiGq~~~~~~---L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~~   82 (394)
T PRK07940          7 LVGQEAVVAE---LRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLAG   82 (394)
T ss_pred             ccChHHHHHH---HHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcC
Confidence            6899999955   5555566541        24789999999999999999999999775310 00111110        


Q ss_pred             ----------------hhhhhhhhhhhhhcc----C-cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhh
Q psy14616         65 ----------------SLEMNKTEEETEMIE----G-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG  123 (174)
Q Consensus        65 ----------------~~~~~~~~~~~~~~~----~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  123 (174)
                                      -.++....+.....|    . .++++++|++ +.   ..++..++..  +..  -.+.+|  |.
T Consensus        83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-~~---~aanaLLk~L--Eep--~~~~~f--IL  152 (394)
T PRK07940         83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-TE---RAANALLKAV--EEP--PPRTVW--LL  152 (394)
T ss_pred             CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-CH---HHHHHHHHHh--hcC--CCCCeE--EE
Confidence                            011111112111112    1 3556677777 33   2222222211  100  123334  44


Q ss_pred             cccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHH
Q psy14616        124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKI  159 (174)
Q Consensus       124 ~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~  159 (174)
                      ++ +.+..++|+++|||+.++|.+++.+++.++|..
T Consensus       153 ~a-~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~  187 (394)
T PRK07940        153 CA-PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR  187 (394)
T ss_pred             EE-CChHHChHHHHhhCeEEECCCCCHHHHHHHHHH
Confidence            44 347899999999999999999999999999875

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.74  E-value=2.8e-17  Score=126.44  Aligned_cols=155  Identities=20%  Similarity=0.249  Sum_probs=93.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-hhhh-c
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-ETEM-I   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~   78 (174)
                      +|||+++++.+..+..........+.+++|+||||||||++|+++|+.++...  ..........  ...... .... .
T Consensus         6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~--~~~~~~~~~~--~~~l~~~l~~~~~   81 (305)
T TIGR00635         6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL--KITSGPALEK--PGDLAAILTNLEE   81 (305)
T ss_pred             HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE--EEeccchhcC--chhHHHHHHhccc
Confidence            68999999888777765555444457899999999999999999999998552  2222211110  001111 0111 2


Q ss_pred             cCcEEEEEEeccCCCCC--------CccceeEEEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEecCC
Q psy14616         79 EGEVVEIQIERPATGLG--------SKVGKLTMKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQP  147 (174)
Q Consensus        79 ~~~i~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~  147 (174)
                      ...++++|+|.+.....        +....+.+........  ...++..+  ++++ +.+..++++++||| .++.+.+
T Consensus        82 ~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l--i~~t-~~~~~l~~~l~sR~~~~~~l~~  158 (305)
T TIGR00635        82 GDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL--VGAT-TRAGMLTSPLRDRFGIILRLEF  158 (305)
T ss_pred             CCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE--EEec-CCccccCHHHHhhcceEEEeCC
Confidence            33556677776622110        0000111111110111  12233333  5555 56678999999999 6789999


Q ss_pred             CCHHHHHHHHHHHhc
Q psy14616        148 YQDEEIQAILKIRLV  162 (174)
Q Consensus       148 ~~~~e~~~il~~~l~  162 (174)
                      |+.+++.+++++...
T Consensus       159 l~~~e~~~il~~~~~  173 (305)
T TIGR00635       159 YTVEELAEIVSRSAG  173 (305)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998664

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.74  E-value=8.3e-18  Score=135.59  Aligned_cols=147  Identities=19%  Similarity=0.230  Sum_probs=89.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~   58 (174)
                      ||||++++   ..+...+.+++.+ +++||+|||||||||+|+++|+.+++...                      +..+
T Consensus        16 ivGq~~i~---~~L~~~i~~~~l~-~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el   91 (472)
T PRK14962         16 VVGQDHVK---KLIINALKKNSIS-HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL   91 (472)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence            68999998   4555666788765 77999999999999999999999986421                      2233


Q ss_pred             cccccch-hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC
Q psy14616         59 AGSEIYS-LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG  131 (174)
Q Consensus        59 ~~~~~~~-~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~  131 (174)
                      +++...+ .++..+.+.....+     ..++++++|.+ +.   ..++..+     ....+. ++.++  +.++ +.+..
T Consensus        92 ~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-t~---~a~~~LL-----k~LE~p~~~vv~--Ilat-tn~~k  159 (472)
T PRK14962         92 DAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-TK---EAFNALL-----KTLEEPPSHVVF--VLAT-TNLEK  159 (472)
T ss_pred             eCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-HH---HHHHHHH-----HHHHhCCCcEEE--EEEe-CChHh
Confidence            3321111 11112112221111     13444555555 22   1111111     111111 22333  4444 34568


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++++++|||+++.|.+++.+++..+++.....
T Consensus       160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~  191 (472)
T PRK14962        160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEA  191 (472)
T ss_pred             hhHHHhcCcEEEEECCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987644

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.74  E-value=7.8e-18  Score=138.86  Aligned_cols=147  Identities=19%  Similarity=0.283  Sum_probs=91.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC--------------------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP--------------------------   54 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~--------------------------   54 (174)
                      ||||++++   ..+.+++.+++.+ +.+||+||+|||||++|+++|+.++|..+                          
T Consensus        18 viGQe~vv---~~L~~~l~~~rl~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~   93 (618)
T PRK14951         18 MVGQEHVV---QALTNALTQQRLH-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV   93 (618)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence            68999999   5566666888876 78899999999999999999999987421                          


Q ss_pred             -eeeecccccchh-hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcc
Q psy14616         55 -FTSMAGSEIYSL-EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTA  125 (174)
Q Consensus        55 -~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~  125 (174)
                       +..++..+-.+. ++....+.....+     ..++++|+|.+ +.   ...+..++      +.+. + +..|  |.++
T Consensus        94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-s~---~a~NaLLK------tLEEPP~~~~f--IL~T  161 (618)
T PRK14951         94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-TN---TAFNAMLK------TLEEPPEYLKF--VLAT  161 (618)
T ss_pred             ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-CH---HHHHHHHH------hcccCCCCeEE--EEEE
Confidence             111111110000 1111111111111     13455566665 33   22222111      1122 2 2334  3344


Q ss_pred             cCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        126 YSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       126 ~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       +++..++++++|||++++|.+++.+++.++++..+.++
T Consensus       162 -td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e  199 (618)
T PRK14951        162 -TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE  199 (618)
T ss_pred             -CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHc
Confidence             46778999999999999999999999999999877554

>CHL00181 cbbX CbbX; Provisional

Probab=99.73  E-value=7.9e-18  Score=128.20  Aligned_cols=161  Identities=17%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCc---CCceEEEEcCCCCcHHHHHHHHHHHhCC-----CCCeeeecccccch
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKI---AGRAILLAGQPGTGKTAIAMGLAQALGP-----DTPFTSMAGSEIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~---~~~~~ll~GppG~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~   65 (174)
                      ++|++++|+++..+..++..       |..   ++.+++|+||||||||++|+++|+.+..     ..+++.++..++.+
T Consensus        25 l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~  104 (287)
T CHL00181         25 LVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG  104 (287)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence            68999999988877654431       221   2457999999999999999999987621     12466666666655


Q ss_pred             hhhhhhhhh----h-hhccCcEEEEEEeccCCCCC-CccceeEEEeccchhhhcc-ccccchhhhcccCCC----CCCCH
Q psy14616         66 LEMNKTEEE----T-EMIEGEVVEIQIERPATGLG-SKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSP----HGIPI  134 (174)
Q Consensus        66 ~~~~~~~~~----~-~~~~~~i~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~----~~l~~  134 (174)
                      .+.+.....    . ....|.++++|+|.+..+.. .+.+.-. ...-.....+. .+.++  |++++...    ..++|
T Consensus       105 ~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~-~~~L~~~me~~~~~~~v--I~ag~~~~~~~~~~~np  181 (287)
T CHL00181        105 QYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEA-IEILLQVMENQRDDLVV--IFAGYKDRMDKFYESNP  181 (287)
T ss_pred             HHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHH-HHHHHHHHhcCCCCEEE--EEeCCcHHHHHHHhcCH
Confidence            555433211    1 12345667788887633210 0000000 00000001111 22222  34432111    24579


Q ss_pred             Hhhcce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        135 DLLDRM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       135 ~l~sR~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++.+|| ..|.|++|+.+|+.+|+...+.+.
T Consensus       182 ~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~  212 (287)
T CHL00181        182 GLSSRIANHVDFPDYTPEELLQIAKIMLEEQ  212 (287)
T ss_pred             HHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence            999999 789999999999999999987654

>KOG1942|consensus

Probab=99.73  E-value=5.9e-17  Score=120.90  Aligned_cols=72  Identities=60%  Similarity=0.980  Sum_probs=68.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      +|||+.++.+.....+++++-+..++.+||.||||||||.+|-+++++||..+||+.+.++.+++.++.+++
T Consensus        40 ~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTE  111 (456)
T KOG1942|consen   40 FVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTE  111 (456)
T ss_pred             cccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999998887776

>KOG2680|consensus

Probab=99.73  E-value=3.5e-17  Score=122.35  Aligned_cols=92  Identities=82%  Similarity=1.213  Sum_probs=81.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--------   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------   72 (174)
                      +|||-.++++...+..++++|+..++.+|+.|+||+|||.+|..+|+.||.+.||..+.++.+++.++.+++        
T Consensus        42 mVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAltQAfRk  121 (454)
T KOG2680|consen   42 MVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEALTQAFRK  121 (454)
T ss_pred             chhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999999999999887        


Q ss_pred             -------hhhhhccCcEEEEEEeccCC
Q psy14616         73 -------EETEMIEGEVVEIQIERPAT   92 (174)
Q Consensus        73 -------~~~~~~~~~i~~~~id~~~~   92 (174)
                             ++.++..|.++.+.||+..+
T Consensus       122 siGvrIKEetevIEGEVVeiqidRp~t  148 (454)
T KOG2680|consen  122 SIGVRIKEETEVIEGEVVEIQIDRPAT  148 (454)
T ss_pred             hhceEeeheeeeecceEEEEEeecccc
Confidence                   33455577777777766533

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=131.24  Aligned_cols=160  Identities=18%  Similarity=0.143  Sum_probs=104.5

Q ss_pred             CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+..++.+.......        +-|..+++++||+||||||||++|+++|..++  .++..+.+..+...+.+...
T Consensus       147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~fi~i~~s~l~~k~~ge~~  224 (398)
T PTZ00454        147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATFIRVVGSEFVQKYLGEGP  224 (398)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCEEEEehHHHHHHhcchhH
Confidence            568898997777655321        22556679999999999999999999999987  44777776666555555433


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCCccce-----eEEEeccchhhh---ccccccchhhhcccCCCCCCCHHh
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGSKVGK-----LTMKTTEMETSY---DLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                             ..+ ...|..++++|+|.+.....+....     .......+....   ...+..+  |++| |++..++|++
T Consensus       225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V--I~aT-N~~d~LDpAl  301 (398)
T PTZ00454        225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV--IMAT-NRADTLDPAL  301 (398)
T ss_pred             HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE--EEec-CCchhCCHHH
Confidence                   111 2236678888999874332111000     000011111111   1123333  5555 8899999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++  || ..|+++.|+.++..+|++.++.+..
T Consensus       302 lR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~  333 (398)
T PTZ00454        302 LRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN  333 (398)
T ss_pred             cCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC
Confidence            86  99 7899999999999999998775543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=6.4e-18  Score=138.79  Aligned_cols=147  Identities=20%  Similarity=0.256  Sum_probs=91.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------------   65 (174)
                      ||||++++   ..+.+++++|+.+ +.+||+||+|||||++|+++|+.++|........|+.|.+               
T Consensus        17 VIGQe~vv---~~L~~aI~~grl~-HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI   92 (702)
T PRK14960         17 LVGQNHVS---RALSSALERGRLH-HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI   92 (702)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence            68999998   5556666788876 8889999999999999999999998753211111111110               


Q ss_pred             --------hhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         66 --------LEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        66 --------~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                              .++....+.....+  +   .++++++|.+ +.   ...+..      ......  .+..|  |.++ +++.
T Consensus        93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-S~---~A~NAL------LKtLEEPP~~v~F--ILaT-td~~  159 (702)
T PRK14960         93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-ST---HSFNAL------LKTLEEPPEHVKF--LFAT-TDPQ  159 (702)
T ss_pred             cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-CH---HHHHHH------HHHHhcCCCCcEE--EEEE-CChH
Confidence                    01111111111111  1   3444566655 32   112211      111222  22334  4444 4677


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||+++.|.+++.+++.++++..+.++
T Consensus       160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE  193 (702)
T PRK14960        160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKE  193 (702)
T ss_pred             hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence            8899999999999999999999999999877654

>KOG0736|consensus

Probab=99.73  E-value=1.1e-17  Score=137.38  Aligned_cols=156  Identities=22%  Similarity=0.296  Sum_probs=108.4

Q ss_pred             chHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh
Q psy14616          3 GQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET   75 (174)
Q Consensus         3 G~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (174)
                      |.|++|..+....       +...+|..+..++|||||||||||.+|+++|-++.  ..|..+.+-++..+++|+.+...
T Consensus       676 GLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--L~FlSVKGPELLNMYVGqSE~NV  753 (953)
T KOG0736|consen  676 GLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--LNFLSVKGPELLNMYVGQSEENV  753 (953)
T ss_pred             CHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--eeEEeecCHHHHHHHhcchHHHH
Confidence            6888996655433       33445666567999999999999999999999886  45889999999999999988432


Q ss_pred             -hh-------ccCcEEEEEEeccCCCC---CCcccee-EEE---eccchhhhc-cccccchhhhcccCCCCCCCHHhh--
Q psy14616         76 -EM-------IEGEVVEIQIERPATGL---GSKVGKL-TMK---TTEMETSYD-LGAKMIEAIGTAYSSPHGIPIDLL--  137 (174)
Q Consensus        76 -~~-------~~~~i~~~~id~~~~~~---~~~~~~~-~~~---~~~~~~~~~-~~~~~~~~i~~~~~~~~~l~~~l~--  137 (174)
                       ++       .|+.|+++|+|.+....   +|+.+.+ +..   ..+++...+ -...+|  +..++|+|.-+||+|+  
T Consensus       754 R~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VF--ViGATNRPDLLDpALLRP  831 (953)
T KOG0736|consen  754 REVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVF--VIGATNRPDLLDPALLRP  831 (953)
T ss_pred             HHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceE--EEecCCCccccChhhcCC
Confidence             22       48899999999985444   3444432 111   223333443 234556  4455599999999999  


Q ss_pred             cce-eeEecCCCC-HHHHHHHHHHHhc
Q psy14616        138 DRM-VIIPTQPYQ-DEEIQAILKIRLV  162 (174)
Q Consensus       138 sR~-~~i~~~~~~-~~e~~~il~~~l~  162 (174)
                      .|| ..+++.+.+ .+....+|+...+
T Consensus       832 GRFDKLvyvG~~~d~esk~~vL~AlTr  858 (953)
T KOG0736|consen  832 GRFDKLVYVGPNEDAESKLRVLEALTR  858 (953)
T ss_pred             CccceeEEecCCccHHHHHHHHHHHHH
Confidence            899 566666554 5555666665443

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.73  E-value=5.4e-17  Score=126.14  Aligned_cols=154  Identities=21%  Similarity=0.257  Sum_probs=94.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch-hhhhhhhhhhhhc-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS-LEMNKTEEETEMI-   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-   78 (174)
                      +|||++.++.+..+....+....++++++|+||||||||++|+++|+.++...  ...+...... .++....  .... 
T Consensus        27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~--~~~~~~~~~~~~~l~~~l--~~l~~  102 (328)
T PRK00080         27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI--RITSGPALEKPGDLAAIL--TNLEE  102 (328)
T ss_pred             hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe--EEEecccccChHHHHHHH--Hhccc
Confidence            68999999888887776655445567999999999999999999999998653  2222211110 0111100  1112 


Q ss_pred             cCcEEEEEEeccCCCCCCc-------cc--eeEEEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEecC
Q psy14616         79 EGEVVEIQIERPATGLGSK-------VG--KLTMKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQ  146 (174)
Q Consensus        79 ~~~i~~~~id~~~~~~~~~-------~~--~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~  146 (174)
                      .+.++++|+|.+ +....+       ..  .+.+....-...  ..+++..+  ++++ ++...++++|+||| .++.++
T Consensus       103 ~~vl~IDEi~~l-~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l--i~at-~~~~~l~~~L~sRf~~~~~l~  178 (328)
T PRK00080        103 GDVLFIDEIHRL-SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL--IGAT-TRAGLLTSPLRDRFGIVQRLE  178 (328)
T ss_pred             CCEEEEecHhhc-chHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE--Eeec-CCcccCCHHHHHhcCeeeecC
Confidence            235666788876 321000       00  011111100001  11233223  5565 67788999999999 779999


Q ss_pred             CCCHHHHHHHHHHHhc
Q psy14616        147 PYQDEEIQAILKIRLV  162 (174)
Q Consensus       147 ~~~~~e~~~il~~~l~  162 (174)
                      +|+.+++.+++++...
T Consensus       179 ~~~~~e~~~il~~~~~  194 (328)
T PRK00080        179 FYTVEELEKIVKRSAR  194 (328)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998654

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.72  E-value=5.3e-18  Score=136.43  Aligned_cols=151  Identities=26%  Similarity=0.289  Sum_probs=96.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEG   80 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (174)
                      ++||+++.   ..+.+++++++.+ |.++|+||-||||||+||.+|+.|||......-.|+.|..        +.++..|
T Consensus        18 vvGQe~v~---~~L~nal~~~ri~-hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~--------Ck~I~~g   85 (515)
T COG2812          18 VVGQEHVV---KTLSNALENGRIA-HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS--------CKEINEG   85 (515)
T ss_pred             hcccHHHH---HHHHHHHHhCcch-hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh--------hHhhhcC
Confidence            58999999   5666666888887 9999999999999999999999999875322223333322        1233333


Q ss_pred             -cEEEEEEeccCCCCCC------------c-cc--eeEEEec----------cchhhhcc-ccccchhhhcccCCCCCCC
Q psy14616         81 -EVVEIQIERPATGLGS------------K-VG--KLTMKTT----------EMETSYDL-GAKMIEAIGTAYSSPHGIP  133 (174)
Q Consensus        81 -~i~~~~id~~~~~~~~------------~-~~--~~~~~~~----------~~~~~~~~-~~~~~~~i~~~~~~~~~l~  133 (174)
                       -+..+|||.+.+..-+            + .+  .+..++.          .+..+... +.++...+|||  .+.+++
T Consensus        86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT--e~~Kip  163 (515)
T COG2812          86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT--EPQKIP  163 (515)
T ss_pred             CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC--CcCcCc
Confidence             2333455544221100            0 00  0111110          01111222 22333224554  789999


Q ss_pred             HHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        134 IDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       134 ~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++++|||+.+.|..++.+++...|...+.++.
T Consensus       164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~  195 (515)
T COG2812         164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG  195 (515)
T ss_pred             hhhhhccccccccCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999886654

>PLN03025 replication factor C subunit; Provisional

Probab=99.72  E-value=1.1e-17  Score=129.43  Aligned_cols=146  Identities=17%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh-hhh-hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM-NKT-EEET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~-~~~-~~~~   75 (174)
                      ++||++++..   +..+++++..+  +++|+||||||||++|+++|+++.+.   ..+..++.++..+.+. ... ...+
T Consensus        15 ~~g~~~~~~~---L~~~~~~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~   89 (319)
T PLN03025         15 IVGNEDAVSR---LQVIARDGNMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFA   89 (319)
T ss_pred             hcCcHHHHHH---HHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHH
Confidence            5899998855   44556777665  79999999999999999999998432   2345566554433221 110 0101


Q ss_pred             h----h---ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-cc-ccchhhhcccCCCCCCCHHhhcceeeEecC
Q psy14616         76 E----M---IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GA-KMIEAIGTAYSSPHGIPIDLLDRMVIIPTQ  146 (174)
Q Consensus        76 ~----~---~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~  146 (174)
                      .    .   ....++++|+|.+ +.   ..++..+.      ..+. +. +.|  +.++ |....+.++++|||.+++|.
T Consensus        90 ~~~~~~~~~~~kviiiDE~d~l-t~---~aq~aL~~------~lE~~~~~t~~--il~~-n~~~~i~~~L~SRc~~i~f~  156 (319)
T PLN03025         90 QKKVTLPPGRHKIVILDEADSM-TS---GAQQALRR------TMEIYSNTTRF--ALAC-NTSSKIIEPIQSRCAIVRFS  156 (319)
T ss_pred             hccccCCCCCeEEEEEechhhc-CH---HHHHHHHH------HHhcccCCceE--EEEe-CCccccchhHHHhhhcccCC
Confidence            0    1   1224566688777 32   12222111      1111 11 223  3333 66778999999999999999


Q ss_pred             CCCHHHHHHHHHHHhchh
Q psy14616        147 PYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       147 ~~~~~e~~~il~~~l~~~  164 (174)
                      +++++++.++++....++
T Consensus       157 ~l~~~~l~~~L~~i~~~e  174 (319)
T PLN03025        157 RLSDQEILGRLMKVVEAE  174 (319)
T ss_pred             CCCHHHHHHHHHHHHHHc
Confidence            999999999999877554

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.72  E-value=1.3e-17  Score=133.15  Aligned_cols=147  Identities=24%  Similarity=0.326  Sum_probs=96.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhh--h-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETE--M-   77 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-   77 (174)
                      +|||+++...-..+..+++++..+  +++|+||||||||++|+++|+.++..  +..+++......++....+...  . 
T Consensus        14 ~vGq~~~v~~~~~L~~~i~~~~~~--~ilL~GppGtGKTtLA~~ia~~~~~~--~~~l~a~~~~~~~ir~ii~~~~~~~~   89 (413)
T PRK13342         14 VVGQEHLLGPGKPLRRMIEAGRLS--SMILWGPPGTGKTTLARIIAGATDAP--FEALSAVTSGVKDLREVIEEARQRRS   89 (413)
T ss_pred             hcCcHHHhCcchHHHHHHHcCCCc--eEEEECCCCCCHHHHHHHHHHHhCCC--EEEEecccccHHHHHHHHHHHHHhhh
Confidence            689999976645577777777654  89999999999999999999998854  6666655432223322222221  1 


Q ss_pred             --ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhh-cccCCCCCCCHHhhcceeeEecCCCCHHHHH
Q psy14616         78 --IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG-TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ  154 (174)
Q Consensus        78 --~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~  154 (174)
                        ....++++|+|++ +.   ..+...+.      ..+....++  ++ ++.|....++++++|||.++.|.+++.+++.
T Consensus        90 ~g~~~vL~IDEi~~l-~~---~~q~~LL~------~le~~~iil--I~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~  157 (413)
T PRK13342         90 AGRRTILFIDEIHRF-NK---AQQDALLP------HVEDGTITL--IGATTENPSFEVNPALLSRAQVFELKPLSEEDIE  157 (413)
T ss_pred             cCCceEEEEechhhh-CH---HHHHHHHH------HhhcCcEEE--EEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence              1224555677765 32   22221111      111122223  43 4445567899999999999999999999999


Q ss_pred             HHHHHHhch
Q psy14616        155 AILKIRLVK  163 (174)
Q Consensus       155 ~il~~~l~~  163 (174)
                      .++++.+..
T Consensus       158 ~lL~~~l~~  166 (413)
T PRK13342        158 QLLKRALED  166 (413)
T ss_pred             HHHHHHHHH
Confidence            999997654

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=1.6e-17  Score=136.56  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------   66 (174)
                      ||||++++   ..+.+++++|+.+ |.+||+||+|||||++|+++|+.++|........|+.|-++              
T Consensus        15 ivGq~~i~---~~L~~~i~~~r~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi   90 (584)
T PRK14952         15 VVGQEHVT---EPLSSALDAGRIN-HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV   90 (584)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence            68999999   5566667888876 67899999999999999999999987521111112211110              


Q ss_pred             -----------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCC
Q psy14616         67 -----------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSS  128 (174)
Q Consensus        67 -----------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~  128 (174)
                                 ++.++.+.....|     ..+++++.|.+ +.   ..++..+      .+... + +.+|  |.++ +.
T Consensus        91 eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-t~---~A~NALL------K~LEEpp~~~~f--IL~t-te  157 (584)
T PRK14952         91 ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-TT---AGFNALL------KIVEEPPEHLIF--IFAT-TE  157 (584)
T ss_pred             EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-CH---HHHHHHH------HHHhcCCCCeEE--EEEe-CC
Confidence                       0000001111111     12333455444 22   1222111      11222 2 3344  3344 45


Q ss_pred             CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +..+.++++|||+++.|.+++.+++.++++..+.++
T Consensus       158 ~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e  193 (584)
T PRK14952        158 PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQE  193 (584)
T ss_pred             hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            679999999999999999999999999998876554

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.72  E-value=1.8e-17  Score=140.74  Aligned_cols=147  Identities=19%  Similarity=0.139  Sum_probs=90.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------   66 (174)
                      ||||+++++   .|..++++++.+ |.+||+||+|||||++|++||+.|+|........|+.|-++              
T Consensus        17 iiGqe~v~~---~L~~~i~~~ri~-Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~   92 (824)
T PRK07764         17 VIGQEHVTE---PLSTALDSGRIN-HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT   92 (824)
T ss_pred             hcCcHHHHH---HHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence            689999994   455566788876 67999999999999999999999987421111112222110              


Q ss_pred             -----------hhhhhhhhhhhc----c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCC
Q psy14616         67 -----------EMNKTEEETEMI----E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSS  128 (174)
Q Consensus        67 -----------~~~~~~~~~~~~----~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~  128 (174)
                                 ++..+.+.....    . ..++++++|.+ +.   ..++..++      .++ . .+++|  |.++ +.
T Consensus        93 eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-t~---~a~NaLLK------~LEEpP~~~~f--Il~t-t~  159 (824)
T PRK07764         93 EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-TP---QGFNALLK------IVEEPPEHLKF--IFAT-TE  159 (824)
T ss_pred             EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-CH---HHHHHHHH------HHhCCCCCeEE--EEEe-CC
Confidence                       011111111111    1 13445566666 32   22222211      122 2 23344  3344 45


Q ss_pred             CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ...+.++|+|||++|.|.+++.+++.++|++.+.++
T Consensus       160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E  195 (824)
T PRK07764        160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE  195 (824)
T ss_pred             hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence            667999999999999999999999999999876544

>KOG0742|consensus

Probab=99.72  E-value=1.2e-17  Score=129.34  Aligned_cols=155  Identities=19%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHH---HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc-----
Q psy14616          7 ARRAAGVVLGMI---KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI-----   78 (174)
Q Consensus         7 ~~~~l~~~~~~~---~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   78 (174)
                      +.+.|+.+....   +..+.|.+|++||||||||||.+|+-||+..|.+  |..++++++..+.-..+....+++     
T Consensus       363 Le~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlD--YA~mTGGDVAPlG~qaVTkiH~lFDWakk  440 (630)
T KOG0742|consen  363 LEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLD--YAIMTGGDVAPLGAQAVTKIHKLFDWAKK  440 (630)
T ss_pred             HHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCc--eehhcCCCccccchHHHHHHHHHHHHHhh
Confidence            444455444333   3456677899999999999999999999999965  667788887765555555444443     


Q ss_pred             cCcEEEEEEecc---CCC---CCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCCCCHH
Q psy14616         79 EGEVVEIQIERP---ATG---LGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQPYQDE  151 (174)
Q Consensus        79 ~~~i~~~~id~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~  151 (174)
                      +.+-++++||+.   +..   ...++..-.-....+..+-+.++.++  ++.++|+|..++.++.+|+ ++++|+-|.++
T Consensus       441 S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdiv--LvlAtNrpgdlDsAV~DRide~veFpLPGeE  518 (630)
T KOG0742|consen  441 SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIV--LVLATNRPGDLDSAVNDRIDEVVEFPLPGEE  518 (630)
T ss_pred             cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceE--EEeccCCccchhHHHHhhhhheeecCCCChH
Confidence            234455556654   111   11111111111223344445666666  5666699999999999999 99999999999


Q ss_pred             HHHHHHHHHhchhh
Q psy14616        152 EIQAILKIRLVKNE  165 (174)
Q Consensus       152 e~~~il~~~l~~~~  165 (174)
                      |..++|..++.+.-
T Consensus       519 ERfkll~lYlnkyi  532 (630)
T KOG0742|consen  519 ERFKLLNLYLNKYI  532 (630)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999986643

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=2.2e-17  Score=134.66  Aligned_cols=147  Identities=20%  Similarity=0.247  Sum_probs=89.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc----------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY----------------   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~----------------   64 (174)
                      ||||++++   ..+...++.++.+ +.+||+||+|||||++|+.+|+.++|......-.++.|.                
T Consensus        18 iiGq~~~v---~~L~~~i~~~rl~-ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei   93 (546)
T PRK14957         18 VAGQQHAL---NSLVHALETQKVH-HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI   93 (546)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence            68999999   4566667888765 679999999999999999999999874211111111110                


Q ss_pred             ------h-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         65 ------S-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        65 ------~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                            + .++..+.+.....     ...++++++|++ +.   ..++..++      .... + ...|  |.++ ++..
T Consensus        94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-s~---~a~naLLK------~LEepp~~v~f--IL~T-td~~  160 (546)
T PRK14957         94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-SK---QSFNALLK------TLEEPPEYVKF--ILAT-TDYH  160 (546)
T ss_pred             ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-cH---HHHHHHHH------HHhcCCCCceE--EEEE-CChh
Confidence                  0 0111111111111     113444566655 32   22221111      1122 2 2333  3344 4578


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||++++|.+++.+++.+++++.+.++
T Consensus       161 kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e  194 (546)
T PRK14957        161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKE  194 (546)
T ss_pred             hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999876553

>KOG0737|consensus

Probab=99.72  E-value=8.2e-18  Score=128.44  Aligned_cols=161  Identities=19%  Similarity=0.220  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHHHH-------HHHhcC--cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          3 GQLQARRAAGVVLG-------MIKEGK--IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         3 G~~~~~~~l~~~~~-------~~~~g~--~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |.+.+++++..+.-       ....|+  .|++++||+||||||||.+|+++|++.|.  .|+.+..+.+.+.+.++.+.
T Consensus        96 gLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga--~fInv~~s~lt~KWfgE~eK  173 (386)
T KOG0737|consen   96 GLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA--NFINVSVSNLTSKWFGEAQK  173 (386)
T ss_pred             chHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC--CcceeeccccchhhHHHHHH
Confidence            57788877665442       111222  24689999999999999999999999994  48888888888888877662


Q ss_pred             h--------hhhccCcEEEEEEeccCCCCC--CccceeE----EEeccchhhhccccccchhhhcccCCCCCCCHHhhcc
Q psy14616         74 E--------TEMIEGEVVEIQIERPATGLG--SKVGKLT----MKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        74 ~--------~~~~~~~i~~~~id~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                      .        ..+.|..++++|+|.++...+  +-+....    |...|-....+-...++  +..++|+|..++.++++|
T Consensus       174 lv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVl--VlgATNRP~DlDeAiiRR  251 (386)
T KOG0737|consen  174 LVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVL--VLGATNRPFDLDEAIIRR  251 (386)
T ss_pred             HHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEE--EEeCCCCCccHHHHHHHh
Confidence            2        244577888889887732221  1111111    22222111111122233  445559999999999999


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVKNERN  167 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~~~~~  167 (174)
                      + .++++.-|+.++..+||+-.|.++...
T Consensus       252 ~p~rf~V~lP~~~qR~kILkviLk~e~~e  280 (386)
T KOG0737|consen  252 LPRRFHVGLPDAEQRRKILKVILKKEKLE  280 (386)
T ss_pred             CcceeeeCCCchhhHHHHHHHHhcccccC
Confidence            9 899999999999999999998777654

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=9e-18  Score=135.22  Aligned_cols=147  Identities=16%  Similarity=0.151  Sum_probs=90.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----------------------eee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----------------------TSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----------------------~~~   58 (174)
                      +|||++++   ..+.+++..|+.+ +++||+||+|+||||+|+.+|+.++|....                      ..+
T Consensus        15 liGQe~vv---~~L~~a~~~~ri~-ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei   90 (491)
T PRK14964         15 LVGQDVLV---RILRNAFTLNKIP-QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI   90 (491)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence            68999999   4556667888876 899999999999999999999999765321                      112


Q ss_pred             cccccch-hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         59 AGSEIYS-LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        59 ~~~~~~~-~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                      ++++-.+ .++..+.+.+...|     ..+++++.|.+ +.   ..++..+      ...+. + ++.|  |.++ +...
T Consensus        91 daas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-s~---~A~NaLL------K~LEePp~~v~f--Ilat-te~~  157 (491)
T PRK14964         91 DAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-SN---SAFNALL------KTLEEPAPHVKF--ILAT-TEVK  157 (491)
T ss_pred             ecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-CH---HHHHHHH------HHHhCCCCCeEE--EEEe-CChH
Confidence            2211111 11111112221111     12344455544 22   1122111      11111 2 2333  3344 4667


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||+.+.|.+++.+++.++++....++
T Consensus       158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E  191 (491)
T PRK14964        158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE  191 (491)
T ss_pred             HHHHHHHHhheeeecccccHHHHHHHHHHHHHHc
Confidence            7999999999999999999999999999876554

>CHL00176 ftsH cell division protein; Validated

Probab=99.71  E-value=3.5e-17  Score=135.92  Aligned_cols=159  Identities=24%  Similarity=0.283  Sum_probs=106.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC-------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK-------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~-------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|.+++++.+..+...++...       ..++++||+||||||||++|+++|.+++  .+++.++++.+.....+... 
T Consensus       185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p~i~is~s~f~~~~~g~~~~  262 (638)
T CHL00176        185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VPFFSISGSEFVEMFVGVGAA  262 (638)
T ss_pred             ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeeeccHHHHHHHhhhhhHH
Confidence            5799999999888887777533       3467999999999999999999999987  56777777665544333211 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCC-------cc-ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGS-------KV-GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            ..+ ...|+.++++|+|.+....+.       +. +.+.-....++......+.++  ++++ |++..++++++
T Consensus       263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV--IaaT-N~~~~LD~ALl  339 (638)
T CHL00176        263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV--IAAT-NRVDILDAALL  339 (638)
T ss_pred             HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE--EEec-CchHhhhhhhh
Confidence                  112 224567888899987432211       00 000000001111111123333  5555 88889999999


Q ss_pred             c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +  || ..+.++.|+.++..+|++.++.+.
T Consensus       340 RpGRFd~~I~v~lPd~~~R~~IL~~~l~~~  369 (638)
T CHL00176        340 RPGRFDRQITVSLPDREGRLDILKVHARNK  369 (638)
T ss_pred             ccccCceEEEECCCCHHHHHHHHHHHHhhc
Confidence            5  78 789999999999999999988653

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.71  E-value=2.4e-17  Score=125.48  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=97.1

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCc---CCceEEEEcCCCCcHHHHHHHHHHHhCC-----CCCeeeecccccch
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKI---AGRAILLAGQPGTGKTAIAMGLAQALGP-----DTPFTSMAGSEIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~---~~~~~ll~GppG~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~   65 (174)
                      ++|++++|+++..+..++..       |..   ++.+++|+||||||||++|+++|+.+..     ..+++.++..++.+
T Consensus        24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~  103 (284)
T TIGR02880        24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG  103 (284)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence            58999999998877665532       322   3458999999999999999999987732     12466666655554


Q ss_pred             hhhhhhhhh----h-hhccCcEEEEEEeccCCCCC-----CccceeEEEeccchhhhcc-ccccchhhhccc-CCC---C
Q psy14616         66 LEMNKTEEE----T-EMIEGEVVEIQIERPATGLG-----SKVGKLTMKTTEMETSYDL-GAKMIEAIGTAY-SSP---H  130 (174)
Q Consensus        66 ~~~~~~~~~----~-~~~~~~i~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~-~~~---~  130 (174)
                      ...+.....    . ....|.++++|+|.+.....     .+.+...+.     ...+. .+..+  |++++ ++.   .
T Consensus       104 ~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~-----~le~~~~~~~v--I~a~~~~~~~~~~  176 (284)
T TIGR02880       104 QYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQ-----VMENQRDDLVV--ILAGYKDRMDSFF  176 (284)
T ss_pred             hhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHH-----HHhcCCCCEEE--EEeCCcHHHHHHH
Confidence            444432211    1 12345667788887632210     000111000     00011 22222  44442 212   3


Q ss_pred             CCCHHhhcce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++|++.+|| ..|.|++|+.+|+.+|++..+.+.
T Consensus       177 ~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~  211 (284)
T TIGR02880       177 ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ  211 (284)
T ss_pred             hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence            4689999999 789999999999999999988654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.70  E-value=2.2e-17  Score=135.05  Aligned_cols=147  Identities=18%  Similarity=0.216  Sum_probs=90.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------------   65 (174)
                      ||||+++++   .+.+++.+++.+ +.+||+||||+|||++|+.+|+.++|+.....-.|+.|.+               
T Consensus        18 ivGq~~v~~---~L~~~i~~~~~~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei   93 (527)
T PRK14969         18 LVGQEHVVR---ALTNALEQQRLH-HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV   93 (527)
T ss_pred             hcCcHHHHH---HHHHHHHcCCCC-EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence            689999995   555566777765 7789999999999999999999998753211111222110               


Q ss_pred             --------hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         66 --------LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        66 --------~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                              .++..+.+.+...|     ..+++++.|++ +.   +.++..      ......  .++.|  |.++ +++.
T Consensus        94 ~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-s~---~a~naL------LK~LEepp~~~~f--IL~t-~d~~  160 (527)
T PRK14969         94 DAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-SK---SAFNAM------LKTLEEPPEHVKF--ILAT-TDPQ  160 (527)
T ss_pred             eccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-CH---HHHHHH------HHHHhCCCCCEEE--EEEe-CChh
Confidence                    00111111111111     13444566655 22   122211      111222  22333  4444 4677


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||+.++|.+++.+++.+.+...+.++
T Consensus       161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e  194 (527)
T PRK14969        161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE  194 (527)
T ss_pred             hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            8888999999999999999999999998877544

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=9.1e-17  Score=132.25  Aligned_cols=147  Identities=24%  Similarity=0.238  Sum_probs=90.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------   66 (174)
                      ||||++++   ..+.++++.++.+ |.+||+||+|||||++|+.+|+.++|..+.....|+.|.++              
T Consensus        18 viGq~~v~---~~L~~~i~~~~~~-hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~ei   93 (559)
T PRK05563         18 VVGQEHIT---KTLKNAIKQGKIS-HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEI   93 (559)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEe
Confidence            68999999   5666667778765 78999999999999999999999987532111122221110              


Q ss_pred             ---------hhhhhhhhhhhcc----C-cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         67 ---------EMNKTEEETEMIE----G-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ---------~~~~~~~~~~~~~----~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                               ++..+.+.....|    . .+++++.|.+ +.   +..+..      ..+... + +++|  |.++ +.+.
T Consensus        94 daas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-t~---~a~naL------LKtLEepp~~~if--Ilat-t~~~  160 (559)
T PRK05563         94 DAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-ST---GAFNAL------LKTLEEPPAHVIF--ILAT-TEPH  160 (559)
T ss_pred             eccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-CH---HHHHHH------HHHhcCCCCCeEE--EEEe-CChh
Confidence                     1111112221111    1 2344455555 21   111211      111122 2 2334  4444 4678


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||+.+.|.+++.+++.++++..+.++
T Consensus       161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e  194 (559)
T PRK05563        161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKE  194 (559)
T ss_pred             hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999998876543

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=4.1e-17  Score=132.24  Aligned_cols=149  Identities=19%  Similarity=0.145  Sum_probs=88.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeee----ecccccch-----------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS----MAGSEIYS-----------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~----~~~~~~~~-----------   65 (174)
                      +|||++++   ..+..++.+++.+ +++||+||||||||++|+++|+.++|......    ..|+.|.+           
T Consensus        23 liGq~~vv---~~L~~ai~~~ri~-~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D   98 (507)
T PRK06645         23 LQGQEVLV---KVLSYTILNDRLA-GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD   98 (507)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence            58999999   4555566778765 89999999999999999999999987532110    01111100           


Q ss_pred             ------------hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccC
Q psy14616         66 ------------LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYS  127 (174)
Q Consensus        66 ------------~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~  127 (174)
                                  .++....+.+...|     ..++++++|.+ +.   ...+..++     ...+.+ +..|  |.++ +
T Consensus        99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-s~---~a~naLLk-----~LEepp~~~vf--I~aT-t  166 (507)
T PRK06645         99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-SK---GAFNALLK-----TLEEPPPHIIF--IFAT-T  166 (507)
T ss_pred             EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-CH---HHHHHHHH-----HHhhcCCCEEE--EEEe-C
Confidence                        01111111111111     12334455444 21   11111111     011122 2333  3333 4


Q ss_pred             CCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        128 SPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       128 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ....++++++|||+++.|.+++.+++.++++..+.++.
T Consensus       167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg  204 (507)
T PRK06645        167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN  204 (507)
T ss_pred             ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999999999998876543

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=7.2e-17  Score=134.43  Aligned_cols=147  Identities=22%  Similarity=0.240  Sum_probs=90.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee-eecccccch--------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT-SMAGSEIYS--------------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~-~~~~~~~~~--------------   65 (174)
                      ||||+.++   ..+..+++.++.+ |.+||+||+|+|||++|+++|+.++|..... ...|+.|..              
T Consensus        20 IiGQe~~v---~~L~~aI~~~rl~-HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa   95 (725)
T PRK07133         20 IVGQDHIV---QTLKNIIKSNKIS-HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA   95 (725)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence            68999999   5566666888776 8899999999999999999999998753210 011111110              


Q ss_pred             -----hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCC
Q psy14616         66 -----LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIP  133 (174)
Q Consensus        66 -----~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~  133 (174)
                           .++..+.+.....|     ..+++++.|.+ +.   ..++..      ......+  +++|  |.++ +.+..++
T Consensus        96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-T~---~A~NAL------LKtLEEPP~~tif--ILaT-te~~KLl  162 (725)
T PRK07133         96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-SK---SAFNAL------LKTLEEPPKHVIF--ILAT-TEVHKIP  162 (725)
T ss_pred             ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-CH---HHHHHH------HHHhhcCCCceEE--EEEc-CChhhhh
Confidence                 01111112222211     13344455554 22   112111      1111222  2333  3344 4677999


Q ss_pred             HHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        134 IDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       134 ~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++++|||+++.|.+++.+++.++|+..+.++
T Consensus       163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~ke  193 (725)
T PRK07133        163 LTILSRVQRFNFRRISEDEIVSRLEFILEKE  193 (725)
T ss_pred             HHHHhhceeEEccCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999998866543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.70  E-value=4.4e-17  Score=125.67  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-h-----hccCcEEEEEEe
Q psy14616         22 KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-E-----MIEGEVVEIQIE   88 (174)
Q Consensus        22 ~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~-----~~~~~i~~~~id   88 (174)
                      ..+|..++||||||||||.+|+++|.++|  .+++.++.+++.+.+.++.+       ..+ +     ..|+.++++|||
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg--~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID  222 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMG--IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD  222 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcC--CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence            34578999999999999999999999999  45899999999999999877       222 1     236788889999


Q ss_pred             ccCCCCCCccce----eE---EE---ec----cchhh---hccccccchhhhcccCCCCCCCHHhhc--ceeeEecCCCC
Q psy14616         89 RPATGLGSKVGK----LT---MK---TT----EMETS---YDLGAKMIEAIGTAYSSPHGIPIDLLD--RMVIIPTQPYQ  149 (174)
Q Consensus        89 ~~~~~~~~~~~~----~~---~~---~~----~~~~~---~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~~~i~~~~~~  149 (174)
                      ......++....    +.   |.   +.    .+...   .+..+.++. |+|+ |+++.|+|+|++  ||-.+ +..|+
T Consensus       223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V-IaTT-Nrpd~LDpALlRpGRfDk~-i~lPd  299 (413)
T PLN00020        223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI-IVTG-NDFSTLYAPLIRDGRMEKF-YWAPT  299 (413)
T ss_pred             hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceE-EEeC-CCcccCCHhHcCCCCCCce-eCCCC
Confidence            885544221111    10   11   10    00001   011223331 5555 999999999998  99332 23689


Q ss_pred             HHHHHHHHHHHhchhh
Q psy14616        150 DEEIQAILKIRLVKNE  165 (174)
Q Consensus       150 ~~e~~~il~~~l~~~~  165 (174)
                      .++..+|++.++.+..
T Consensus       300 ~e~R~eIL~~~~r~~~  315 (413)
T PLN00020        300 REDRIGVVHGIFRDDG  315 (413)
T ss_pred             HHHHHHHHHHHhccCC
Confidence            9999999998775543

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=7.6e-17  Score=131.98  Aligned_cols=147  Identities=17%  Similarity=0.214  Sum_probs=90.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------   66 (174)
                      ++||+.++   ..+.+++..++.+ |.+||+||+|+|||++|+++|+.+.|..+.....|+.|.++              
T Consensus        18 IIGQe~iv---~~L~~aI~~~rl~-hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI   93 (605)
T PRK05896         18 IIGQELIK---KILVNAILNNKLT-HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL   93 (605)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence            68999999   5666677888776 88999999999999999999999977532211122222110              


Q ss_pred             ---------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCC
Q psy14616         67 ---------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ---------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~  130 (174)
                               ++....+.....|     +.+++++.|.+ +.   +.++      .+....+.+  +.++  |.++ +.+.
T Consensus        94 daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-t~---~A~N------aLLKtLEEPp~~tvf--IL~T-t~~~  160 (605)
T PRK05896         94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-ST---SAWN------ALLKTLEEPPKHVVF--IFAT-TEFQ  160 (605)
T ss_pred             ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-CH---HHHH------HHHHHHHhCCCcEEE--EEEC-CChH
Confidence                     0111111111111     12344455554 22   1111      112222222  2333  3344 4678


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .+.++++|||++++|.+++.+++..+++..+.++
T Consensus       161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ke  194 (605)
T PRK05896        161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKE  194 (605)
T ss_pred             hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999876543

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=2.7e-17  Score=135.83  Aligned_cols=147  Identities=19%  Similarity=0.227  Sum_probs=91.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc----------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY----------------   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~----------------   64 (174)
                      ||||++++   ..+.+.+++|+.+ +.+||+||+|+|||++|+++|+.++|........|+.|.                
T Consensus        18 iiGq~~v~---~~L~~~i~~~~~~-hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei   93 (576)
T PRK14965         18 LTGQEHVS---RTLQNAIDTGRVA-HAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI   93 (576)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence            68999999   5556666888766 788999999999999999999999875321111111111                


Q ss_pred             -------hhhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         65 -------SLEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        65 -------~~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                             ..++..+.+.....|     ..+++++.|.+ +.   ..++.      +..+.+.  .++.|  |.++ +.+.
T Consensus        94 d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-t~---~a~na------LLk~LEepp~~~~f--Il~t-~~~~  160 (576)
T PRK14965         94 DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-ST---NAFNA------LLKTLEEPPPHVKF--IFAT-TEPH  160 (576)
T ss_pred             eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-CH---HHHHH------HHHHHHcCCCCeEE--EEEe-CChh
Confidence                   011111112222222     12444455555 22   11221      1112222  23344  3344 4668


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++++++|||+.+.|.+++.+++..+++..+.++
T Consensus       161 kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e  194 (576)
T PRK14965        161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE  194 (576)
T ss_pred             hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999998866544

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=5.5e-17  Score=134.19  Aligned_cols=148  Identities=20%  Similarity=0.264  Sum_probs=91.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch--------------h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------L   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------~   66 (174)
                      ||||+++++   .+.+++++++.+ +.+||+||+|||||++|+++|+.++|........|+.|.+              .
T Consensus        18 IIGQe~vv~---~L~~ai~~~rl~-Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi   93 (709)
T PRK08691         18 LVGQEHVVK---ALQNALDEGRLH-HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI   93 (709)
T ss_pred             HcCcHHHHH---HHHHHHHcCCCC-eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence            689999995   555556777765 7899999999999999999999998753221111221110              0


Q ss_pred             ---------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         67 ---------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ---------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                               .+..+.+.+...+     ..++++++|.+ +.   ...+.      +....+.  .++.|  |.++ +++.
T Consensus        94 daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-s~---~A~NA------LLKtLEEPp~~v~f--ILaT-td~~  160 (709)
T PRK08691         94 DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-SK---SAFNA------MLKTLEEPPEHVKF--ILAT-TDPH  160 (709)
T ss_pred             eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-CH---HHHHH------HHHHHHhCCCCcEE--EEEe-CCcc
Confidence                     0111111111111     13444455554 22   11111      1112221  22334  4444 5778


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      .++++++|||+.+.|.+++.+++.++|++.+.++.
T Consensus       161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg  195 (709)
T PRK08691        161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK  195 (709)
T ss_pred             ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999998876653

>KOG0991|consensus

Probab=99.68  E-value=5.1e-17  Score=117.62  Aligned_cols=144  Identities=19%  Similarity=0.321  Sum_probs=97.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCC--CCeeeecccccchhhhhhhh----h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPD--TPFTSMAGSEIYSLEMNKTE----E   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~--~~~~~~~~~~~~~~~~~~~~----~   73 (174)
                      |||.|+....++.+   .++|..|  |+++.|||||||||.+.++|++| |..  -....+|+++--+.++....    .
T Consensus        29 IVGNe~tv~rl~vi---a~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FA  103 (333)
T KOG0991|consen   29 IVGNEDTVERLSVI---AKEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFA  103 (333)
T ss_pred             hhCCHHHHHHHHHH---HHcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHH
Confidence            68999999555554   4888887  99999999999999999999987 422  22456777766555543322    1


Q ss_pred             hh--hhccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         74 ET--EMIEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        74 ~~--~~~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                      ..  ..-+|   .++.+|.|.+..+   .+|.+       .++... ++...  ++.++|...++.+++.|||.+++|..
T Consensus       104 Q~kv~lp~grhKIiILDEADSMT~g---AQQAl-------RRtMEiyS~ttR--FalaCN~s~KIiEPIQSRCAiLRysk  171 (333)
T KOG0991|consen  104 QKKVTLPPGRHKIIILDEADSMTAG---AQQAL-------RRTMEIYSNTTR--FALACNQSEKIIEPIQSRCAILRYSK  171 (333)
T ss_pred             HhhccCCCCceeEEEeeccchhhhH---HHHHH-------HHHHHHHcccch--hhhhhcchhhhhhhHHhhhHhhhhcc
Confidence            11  11133   4566677777444   23322       111111 22222  56677889999999999999999999


Q ss_pred             CCHHHHHHHHHHHh
Q psy14616        148 YQDEEIQAILKIRL  161 (174)
Q Consensus       148 ~~~~e~~~il~~~l  161 (174)
                      +++.++..-|....
T Consensus       172 lsd~qiL~Rl~~v~  185 (333)
T KOG0991|consen  172 LSDQQILKRLLEVA  185 (333)
T ss_pred             cCHHHHHHHHHHHH
Confidence            99988876666544

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.68  E-value=6.7e-17  Score=128.92  Aligned_cols=160  Identities=19%  Similarity=0.213  Sum_probs=102.8

Q ss_pred             CCchHHHHHHHHHHHHHH-H-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI-K-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~-~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+..++.+..+.... .       -|..++.++||+||||||||++|+++|..++.  +++.+..+.+...+.+...
T Consensus       185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~fi~V~~seL~~k~~Ge~~  262 (438)
T PTZ00361        185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TFLRVVGSELIQKYLGDGP  262 (438)
T ss_pred             hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CEEEEecchhhhhhcchHH
Confidence            357888887777666432 1       24456789999999999999999999999974  4777777666655554433


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCC--ccc-----eeEEE-eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGS--KVG-----KLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~--~~~-----~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...+..++++|+|.++....+  ..+     ...+. ...+.......+..+  |+++ |++..+++++
T Consensus       263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~V--I~AT-Nr~d~LDpaL  339 (438)
T PTZ00361        263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKV--IMAT-NRIESLDPAL  339 (438)
T ss_pred             HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEE--EEec-CChHHhhHHh
Confidence            1       11 123456777788877433211  010     00000 001111111223333  5555 8899999999


Q ss_pred             h--cce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 L--DRM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~--sR~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      +  +|| ..|+|+.|+.++..+|++.++.+..
T Consensus       340 lRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~  371 (438)
T PTZ00361        340 IRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMT  371 (438)
T ss_pred             ccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence            8  499 7899999999999999998875543

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.67  E-value=3.2e-16  Score=127.36  Aligned_cols=148  Identities=19%  Similarity=0.250  Sum_probs=88.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC---------------------eeeec
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP---------------------FTSMA   59 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~---------------------~~~~~   59 (174)
                      |+||++++   ..+..++.+++.+ +.+||+|||||||||+|+++|+.++|..+                     +..++
T Consensus        16 vvGq~~v~---~~L~~~i~~~~l~-ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~   91 (504)
T PRK14963         16 VVGQEHVK---EVLLAALRQGRLG-HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID   91 (504)
T ss_pred             hcChHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence            68999998   5556666777765 77799999999999999999999976321                     12222


Q ss_pred             ccccchh-hhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCCC
Q psy14616         60 GSEIYSL-EMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPHG  131 (174)
Q Consensus        60 ~~~~~~~-~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~  131 (174)
                      ..+..+. ++....+.....     ...+++++.|.+ +.   ...+..      ...... + +..+  |.++ +.+..
T Consensus        92 ~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-s~---~a~naL------Lk~LEep~~~t~~--Il~t-~~~~k  158 (504)
T PRK14963         92 AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-SK---SAFNAL------LKTLEEPPEHVIF--ILAT-TEPEK  158 (504)
T ss_pred             ccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-CH---HHHHHH------HHHHHhCCCCEEE--EEEc-CChhh
Confidence            2111110 111111111111     113344455444 21   111111      111111 2 2233  3333 56678


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      +.+++.|||+.++|.+++.+++.+++++.+.++.
T Consensus       159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg  192 (504)
T PRK14963        159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEG  192 (504)
T ss_pred             CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999775543

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1.9e-16  Score=130.10  Aligned_cols=147  Identities=19%  Similarity=0.174  Sum_probs=89.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----------------------eee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----------------------TSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----------------------~~~   58 (174)
                      ||||++++   ..+..++++++.+ +.+||+||+|+|||++|+++|+.++|....                      ..+
T Consensus        18 iiGqe~iv---~~L~~~i~~~~i~-hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~i   93 (563)
T PRK06647         18 LEGQDFVV---ETLKHSIESNKIA-NAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEI   93 (563)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEe
Confidence            68999999   5666677888865 789999999999999999999999864211                      111


Q ss_pred             cccc-cchhhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCC
Q psy14616         59 AGSE-IYSLEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHG  131 (174)
Q Consensus        59 ~~~~-~~~~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  131 (174)
                      ++.. ....++....+.....|  +   .+++++.|.+ +.   ..++..++..     .+.+ ...|  |.++ +.+..
T Consensus        94 dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-s~---~a~naLLK~L-----Eepp~~~vf--I~~t-te~~k  161 (563)
T PRK06647         94 DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-SN---SAFNALLKTI-----EEPPPYIVF--IFAT-TEVHK  161 (563)
T ss_pred             cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-CH---HHHHHHHHhh-----ccCCCCEEE--EEec-CChHH
Confidence            1110 00011111111111111  1   3444455555 22   1222211111     1112 2333  3344 45678


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +.++++|||+++.|.+++.+++.++++....+
T Consensus       162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~  193 (563)
T PRK06647        162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE  193 (563)
T ss_pred             hHHHHHHhceEEEecCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886644

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.4e-16  Score=129.74  Aligned_cols=163  Identities=23%  Similarity=0.296  Sum_probs=116.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC-------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK-------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~-------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      +.|.++++..+..+.+.+++..       .-|++++|+||||||||.+|+++|-+.+  +||..++.+++..++++--. 
T Consensus       152 VAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPFf~iSGS~FVemfVGvGAs  229 (596)
T COG0465         152 VAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPFFSISGSDFVEMFVGVGAS  229 (596)
T ss_pred             hcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCceeccchhhhhhhcCCCcH
Confidence            4699999999999999998633       3469999999999999999999999988  78889998888776664422 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCC-------c-cceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGS-------K-VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            .++ +..|+.++++|||......+.       + +|.+.-...+++.......+++  +++| |++.-+|++|+
T Consensus       230 RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv--iaaT-NRpdVlD~ALl  306 (596)
T COG0465         230 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV--IAAT-NRPDVLDPALL  306 (596)
T ss_pred             HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE--EecC-CCcccchHhhc
Confidence                  222 345888999999987332211       0 1122111222333332223333  4444 99999999999


Q ss_pred             --cce-eeEecCCCCHHHHHHHHHHHhchhhhhh
Q psy14616        138 --DRM-VIIPTQPYQDEEIQAILKIRLVKNERNE  168 (174)
Q Consensus       138 --sR~-~~i~~~~~~~~e~~~il~~~l~~~~~~~  168 (174)
                        .|| ..+.++.|+-....+|++-+..+....+
T Consensus       307 RpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~  340 (596)
T COG0465         307 RPGRFDRQILVELPDIKGREQILKVHAKNKPLAE  340 (596)
T ss_pred             CCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC
Confidence              788 7888999998999999998776655543

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1.8e-16  Score=130.83  Aligned_cols=148  Identities=19%  Similarity=0.166  Sum_probs=89.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeee-----ecccccchh---------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS-----MAGSEIYSL---------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~-----~~~~~~~~~---------   66 (174)
                      ||||+.++   ..+.+++++|+.+ +++||+||+|+|||++|+++|+.++|..+...     ..|+.|.++         
T Consensus        26 liGq~~~v---~~L~~~~~~gri~-ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~  101 (598)
T PRK09111         26 LIGQEAMV---RTLTNAFETGRIA-QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV  101 (598)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence            68999999   5566666888876 88999999999999999999999987632111     111211110         


Q ss_pred             --------------hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhccc
Q psy14616         67 --------------EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAY  126 (174)
Q Consensus        67 --------------~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~  126 (174)
                                    ++.++.+.....+     ..+++++.|.+ +.   ...+..++     ...+.+ ++.|  |.++ 
T Consensus       102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-s~---~a~naLLK-----tLEePp~~~~f--Il~t-  169 (598)
T PRK09111        102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-ST---AAFNALLK-----TLEEPPPHVKF--IFAT-  169 (598)
T ss_pred             ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-CH---HHHHHHHH-----HHHhCCCCeEE--EEEe-
Confidence                          0011111111111     12333454444 21   11111111     111122 2333  3333 


Q ss_pred             CCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        127 SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       127 ~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +....++++++|||+++.|.+++.+++.+++++.+.++
T Consensus       170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke  207 (598)
T PRK09111        170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE  207 (598)
T ss_pred             CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc
Confidence            45667999999999999999999999999999976544

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.67  E-value=3e-16  Score=123.60  Aligned_cols=160  Identities=24%  Similarity=0.254  Sum_probs=100.8

Q ss_pred             CCchHHHHHHHHHHHHHH-H-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI-K-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~-~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      +.|.+..++.+....... .       -|..++++++|+||||||||++|+++|+.++.  ++..+..+.+...+.+...
T Consensus       124 i~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~~~v~~~~l~~~~~g~~~  201 (364)
T TIGR01242       124 IGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TFIRVVGSELVRKYIGEGA  201 (364)
T ss_pred             hCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CEEecchHHHHHHhhhHHH
Confidence            468888887766555332 1       13345689999999999999999999999984  4666666555544444322


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCC------ccceeEEEe--ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGS------KVGKLTMKT--TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                             ..+ ...|+.++++++|.+.....+      ......+..  ..+.......+..+  ++++ |++..+++++
T Consensus       202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v--I~tt-n~~~~ld~al  278 (364)
T TIGR01242       202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV--IAAT-NRPDILDPAL  278 (364)
T ss_pred             HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE--EEec-CChhhCChhh
Confidence                   111 123456788899887433211      000101100  00111111233444  5566 7889999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++  || ..|+++.|+.++..+|++.++.+..
T Consensus       279 ~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~  310 (364)
T TIGR01242       279 LRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK  310 (364)
T ss_pred             cCcccCceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence            85  88 7899999999999999998765443

Many proteins may score above the trusted cutoff because an internal

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=1.4e-16  Score=130.90  Aligned_cols=147  Identities=18%  Similarity=0.238  Sum_probs=89.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~   58 (174)
                      ||||++++   ..+.+++++++.+ +++||+||||||||++|+.+|+.++|...                      +..+
T Consensus        18 IiGQe~v~---~~L~~ai~~~ri~-ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI   93 (624)
T PRK14959         18 VAGQETVK---AILSRAAQENRVA-PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI   93 (624)
T ss_pred             hcCCHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence            68999998   5556666788765 79999999999999999999999987421                      1111


Q ss_pred             cccccch-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         59 AGSEIYS-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        59 ~~~~~~~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                      +...... .++..+.+.....     ...++++|+|.+ +.   +.++..      ....+.  .+.+|  |.++ +...
T Consensus        94 d~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-t~---~a~naL------Lk~LEEP~~~~if--ILaT-t~~~  160 (624)
T PRK14959         94 DGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-TR---EAFNAL------LKTLEEPPARVTF--VLAT-TEPH  160 (624)
T ss_pred             ecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-CH---HHHHHH------HHHhhccCCCEEE--EEec-CChh
Confidence            1110000 0111111111111     123445566665 22   112211      111111  23334  4444 4667


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .+.++++|||+++.|.+++.+++.++|+..+.++
T Consensus       161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e  194 (624)
T PRK14959        161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE  194 (624)
T ss_pred             hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc
Confidence            8889999999999999999999999998866443

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=2.5e-16  Score=130.32  Aligned_cols=146  Identities=14%  Similarity=0.160  Sum_probs=88.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--------eecccccchh------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--------SMAGSEIYSL------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--------~~~~~~~~~~------   66 (174)
                      ||||+.+++   .+.+++++|+.+ +++||+||+|||||++|+.+|+.++|.....        .-.|+.|-++      
T Consensus        18 ivGQe~i~~---~L~~~i~~~ri~-ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g   93 (620)
T PRK14954         18 ITAQEHITH---TIQNSLRMDRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG   93 (620)
T ss_pred             hcCcHHHHH---HHHHHHHcCCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence            689999994   566677888876 7899999999999999999999998842110        0122222110      


Q ss_pred             -----------------hhhhhhhhhhh--c--c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhh
Q psy14616         67 -----------------EMNKTEEETEM--I--E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAI  122 (174)
Q Consensus        67 -----------------~~~~~~~~~~~--~--~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i  122 (174)
                                       ++....+....  +  . ..+++++.|.+ +.   ..++.      +......+  ..++  |
T Consensus        94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-t~---~a~na------LLK~LEePp~~tv~--I  161 (620)
T PRK14954         94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-ST---AAFNA------FLKTLEEPPPHAIF--I  161 (620)
T ss_pred             CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-CH---HHHHH------HHHHHhCCCCCeEE--E
Confidence                             01000011100  0  1 12334455554 21   11111      11111222  2333  3


Q ss_pred             hcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       123 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .++ +....+.+++.|||++++|.+++.+++..+++..+.+
T Consensus       162 L~t-~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~  201 (620)
T PRK14954        162 FAT-TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRA  201 (620)
T ss_pred             EEe-CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH
Confidence            333 3567899999999999999999999999999886644

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.66  E-value=3.7e-16  Score=131.39  Aligned_cols=146  Identities=20%  Similarity=0.264  Sum_probs=95.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-h---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-E---   76 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---   76 (174)
                      ++||+++......+..++++++.+  +++|+|||||||||+|+++|+.++..  +..+++......++....+.. +   
T Consensus        30 ~vGQe~ii~~~~~L~~~i~~~~~~--slLL~GPpGtGKTTLA~aIA~~~~~~--f~~lna~~~~i~dir~~i~~a~~~l~  105 (725)
T PRK13341         30 FVGQDHILGEGRLLRRAIKADRVG--SLILYGPPGVGKTTLARIIANHTRAH--FSSLNAVLAGVKDLRAEVDRAKERLE  105 (725)
T ss_pred             hcCcHHHhhhhHHHHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHhcCc--ceeehhhhhhhHHHHHHHHHHHHHhh
Confidence            589999997766777788887765  89999999999999999999988743  555665422111221111111 1   


Q ss_pred             hc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhh-cccCCCCCCCHHhhcceeeEecCCCCHHHH
Q psy14616         77 MI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG-TAYSSPHGIPIDLLDRMVIIPTQPYQDEEI  153 (174)
Q Consensus        77 ~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~  153 (174)
                      ..  ...++++|+|.+ +.   ..+...+.      .......++  ++ ++.|....++++++|||.+++|++++.+++
T Consensus       106 ~~~~~~IL~IDEIh~L-n~---~qQdaLL~------~lE~g~IiL--I~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi  173 (725)
T PRK13341        106 RHGKRTILFIDEVHRF-NK---AQQDALLP------WVENGTITL--IGATTENPYFEVNKALVSRSRLFRLKSLSDEDL  173 (725)
T ss_pred             hcCCceEEEEeChhhC-CH---HHHHHHHH------HhcCceEEE--EEecCCChHhhhhhHhhccccceecCCCCHHHH
Confidence            11  124566677765 33   22221111      111122222  44 444555779999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy14616        154 QAILKIRLV  162 (174)
Q Consensus       154 ~~il~~~l~  162 (174)
                      ..++++.+.
T Consensus       174 ~~IL~~~l~  182 (725)
T PRK13341        174 HQLLKRALQ  182 (725)
T ss_pred             HHHHHHHHH
Confidence            999999876

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=3.8e-16  Score=126.92  Aligned_cols=148  Identities=20%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~   58 (174)
                      ||||++++   ..+...+++|+.+ +.+||+||+|+|||++|+++|+.+.|...                      +..+
T Consensus        16 iiGqe~v~---~~L~~~I~~grl~-hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el   91 (535)
T PRK08451         16 LIGQESVS---KTLSLALDNNRLA-HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM   91 (535)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence            68999999   5666666888876 78899999999999999999999965321                      1112


Q ss_pred             cccccc-hhhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCC
Q psy14616         59 AGSEIY-SLEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHG  131 (174)
Q Consensus        59 ~~~~~~-~~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~  131 (174)
                      ++..-. -.++..........|     ..+++++.|.+ +.   +.++..++..     .+.+ ++.|  |.++ +++..
T Consensus        92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-t~---~A~NALLK~L-----EEpp~~t~F--IL~t-td~~k  159 (535)
T PRK08451         92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-TK---EAFNALLKTL-----EEPPSYVKF--ILAT-TDPLK  159 (535)
T ss_pred             ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-CH---HHHHHHHHHH-----hhcCCceEE--EEEE-CChhh
Confidence            211100 011111111111111     13444566555 22   2222222211     1112 2333  3344 45689


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++++++|||++++|.+++.+++.++++..+.++
T Consensus       160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E  192 (535)
T PRK08451        160 LPATILSRTQHFRFKQIPQNSIISHLKTILEKE  192 (535)
T ss_pred             CchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999877554

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=2.5e-16  Score=125.19  Aligned_cols=147  Identities=18%  Similarity=0.153  Sum_probs=87.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--------eecccccch-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--------SMAGSEIYS-------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--------~~~~~~~~~-------   65 (174)
                      ||||+.+++   .+..++++|+.+ +++||+||||+|||++|+++|+.++|.....        .-.++.|.+       
T Consensus        18 iiGq~~~~~---~L~~~~~~~~~~-ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~   93 (397)
T PRK14955         18 ITAQEHITR---TIQNSLRMGRVG-HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG   93 (397)
T ss_pred             ccChHHHHH---HHHHHHHhCCcc-eeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence            689999994   566677888876 7799999999999999999999998742110        011111110       


Q ss_pred             ----------------hhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhh
Q psy14616         66 ----------------LEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIG  123 (174)
Q Consensus        66 ----------------~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~  123 (174)
                                      .++....+.....|  +   .++++++|++ +.   ..++..+     ....+.+ ...+  |.
T Consensus        94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-~~---~~~~~LL-----k~LEep~~~t~~--Il  162 (397)
T PRK14955         94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-SI---AAFNAFL-----KTLEEPPPHAIF--IF  162 (397)
T ss_pred             CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-CH---HHHHHHH-----HHHhcCCCCeEE--EE
Confidence                            01111001110001  1   2334455554 21   1111111     1111222 2233  33


Q ss_pred             cccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       124 ~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++ +....+.+++.+||++++|.+++++++.++++..+.+
T Consensus       163 ~t-~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~  201 (397)
T PRK14955        163 AT-TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEA  201 (397)
T ss_pred             Ee-CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence            33 3567889999999999999999999999999987643

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.64  E-value=9.4e-16  Score=123.43  Aligned_cols=146  Identities=19%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC-----------------------eee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP-----------------------FTS   57 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~-----------------------~~~   57 (174)
                      ||||+.++   ..+...++.|+.+ +.+||+||||+|||++|+++|+.+.|...                       +..
T Consensus        19 iiGq~~~v---~~L~~~i~~~~i~-ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~   94 (451)
T PRK06305         19 ILGQDAVV---AVLKNALRFNRAA-HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE   94 (451)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCc-eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence            68999999   5666677888776 78999999999999999999999976421                       111


Q ss_pred             ecccccch-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCC
Q psy14616         58 MAGSEIYS-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSP  129 (174)
Q Consensus        58 ~~~~~~~~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~  129 (174)
                      +++....+ .++....+.....     ...+++++.|.+ +.   +.++.      +....+.  ..+.+  |.++ +..
T Consensus        95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-t~---~~~n~------LLk~lEep~~~~~~--Il~t-~~~  161 (451)
T PRK06305         95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-TK---EAFNS------LLKTLEEPPQHVKF--FLAT-TEI  161 (451)
T ss_pred             eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-CH---HHHHH------HHHHhhcCCCCceE--EEEe-CCh
Confidence            11111100 0111111111111     123444455555 22   11111      1111111  22333  4444 566


Q ss_pred             CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ..+.++++|||++++|.+++++++.++++..+.+
T Consensus       162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~  195 (451)
T PRK06305        162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ  195 (451)
T ss_pred             HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999986644

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.64  E-value=8.9e-16  Score=118.26  Aligned_cols=146  Identities=23%  Similarity=0.258  Sum_probs=88.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--------eecccccchh------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--------SMAGSEIYSL------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--------~~~~~~~~~~------   66 (174)
                      |+||++++   ..+...+++|+.+ +++||+||+|+||+++|+++|+.+.|..+..        ..+-.++.-.      
T Consensus         6 iiGq~~~~---~~L~~~i~~~rl~-ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~   81 (314)
T PRK07399          6 LIGQPLAI---ELLTAAIKQNRIA-PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH   81 (314)
T ss_pred             hCCHHHHH---HHHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence            68999999   6777777889876 8999999999999999999999986543100        0000000000      


Q ss_pred             --------------------------hhhhhhhhhhhc----cC-cEEEEEEeccCCCCCCccceeEEEeccchhhhccc
Q psy14616         67 --------------------------EMNKTEEETEMI----EG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG  115 (174)
Q Consensus        67 --------------------------~~~~~~~~~~~~----~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (174)
                                                .+..+.+.....    .. .+++++.|++ +.   ..++..++.-     .+.+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-~~---~aaNaLLK~L-----EEPp  152 (314)
T PRK07399         82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-NE---AAANALLKTL-----EEPG  152 (314)
T ss_pred             cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-CH---HHHHHHHHHH-----hCCC
Confidence                                      000000000000    11 2233344444 22   1222222211     1122


Q ss_pred             cccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhc
Q psy14616        116 AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       116 ~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      +..|  |..+ +.+..+.|+++|||+.++|.+++++++.++|+....
T Consensus       153 ~~~f--ILi~-~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~  196 (314)
T PRK07399        153 NGTL--ILIA-PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGD  196 (314)
T ss_pred             CCeE--EEEE-CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhc
Confidence            3344  3344 467899999999999999999999999999998754

>PRK04195 replication factor C large subunit; Provisional

Probab=99.64  E-value=2.3e-15  Score=122.48  Aligned_cols=152  Identities=21%  Similarity=0.269  Sum_probs=98.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh-hhhhhhh----h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE-MNKTEEE----T   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~   75 (174)
                      ++|+++++..+..+......|.. ++++||+||||||||++|+++|+.++.  .++.+++++....+ +......    .
T Consensus        16 lvg~~~~~~~l~~~l~~~~~g~~-~~~lLL~GppG~GKTtla~ala~el~~--~~ielnasd~r~~~~i~~~i~~~~~~~   92 (482)
T PRK04195         16 VVGNEKAKEQLREWIESWLKGKP-KKALLLYGPPGVGKTSLAHALANDYGW--EVIELNASDQRTADVIERVAGEAATSG   92 (482)
T ss_pred             hcCCHHHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCHHHHHHHHHHHcCC--CEEEEcccccccHHHHHHHHHHhhccC
Confidence            58999999888887776666664 489999999999999999999999984  46777766543221 1111111    1


Q ss_pred             hhc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCH-HhhcceeeEecCCCCHH
Q psy14616         76 EMI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPI-DLLDRMVIIPTQPYQDE  151 (174)
Q Consensus        76 ~~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~-~l~sR~~~i~~~~~~~~  151 (174)
                      .++   ...++++++|.+.... +..+..     .+.......+..+  |+++ |.+..+.+ ++++||..++|++++.+
T Consensus        93 sl~~~~~kvIiIDEaD~L~~~~-d~~~~~-----aL~~~l~~~~~~i--Ili~-n~~~~~~~k~Lrsr~~~I~f~~~~~~  163 (482)
T PRK04195         93 SLFGARRKLILLDEVDGIHGNE-DRGGAR-----AILELIKKAKQPI--ILTA-NDPYDPSLRELRNACLMIEFKRLSTR  163 (482)
T ss_pred             cccCCCCeEEEEecCccccccc-chhHHH-----HHHHHHHcCCCCE--EEec-cCccccchhhHhccceEEEecCCCHH
Confidence            122   2246667787763221 111100     0111112233333  4455 56667766 89999999999999999


Q ss_pred             HHHHHHHHHhchh
Q psy14616        152 EIQAILKIRLVKN  164 (174)
Q Consensus       152 e~~~il~~~l~~~  164 (174)
                      ++..+++..+..+
T Consensus       164 ~i~~~L~~i~~~e  176 (482)
T PRK04195        164 SIVPVLKRICRKE  176 (482)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999877543

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.63  E-value=1.3e-15  Score=119.39  Aligned_cols=148  Identities=23%  Similarity=0.265  Sum_probs=88.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~   58 (174)
                      +|||++++   ..+...+++|+.+ +.+||+||||+|||++|+.+|+.+.+...                      +..+
T Consensus        16 iig~~~~~---~~l~~~~~~~~~~-~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~   91 (355)
T TIGR02397        16 VIGQEHIV---QTLKNAIKNGRIA-HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI   91 (355)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence            68999999   4555566778765 78999999999999999999999865421                      1112


Q ss_pred             cccccchh-hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC
Q psy14616         59 AGSEIYSL-EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG  131 (174)
Q Consensus        59 ~~~~~~~~-~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~  131 (174)
                      ++...... ++....+.+...|     ..+++++.|.+ +.   ...+..+     ....+. .+..+  |.++ +++..
T Consensus        92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-~~---~~~~~Ll-----~~le~~~~~~~l--Il~~-~~~~~  159 (355)
T TIGR02397        92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-SK---SAFNALL-----KTLEEPPEHVVF--ILAT-TEPHK  159 (355)
T ss_pred             eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-CH---HHHHHHH-----HHHhCCccceeE--EEEe-CCHHH
Confidence            22111110 1111222222211     13444555555 21   1111111     111111 22333  3444 56677


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +.+++++||+.+.|.+++++++.++++.++.++
T Consensus       160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~  192 (355)
T TIGR02397       160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKE  192 (355)
T ss_pred             HHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            889999999999999999999999999876544

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=1.7e-15  Score=122.72  Aligned_cols=147  Identities=18%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------------   65 (174)
                      ++||+++.   ..+.+++++++.+ +.+||+||+|+|||++|+.+|+.++|...-....++.|..               
T Consensus        18 iiGq~~i~---~~L~~~i~~~~i~-hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei   93 (486)
T PRK14953         18 VIGQEIVV---RILKNAVKLQRVS-HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI   93 (486)
T ss_pred             ccChHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence            68999999   5666677888765 7789999999999999999999998631111011111110               


Q ss_pred             -------h-hhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-c-cccchhhhcccCCCC
Q psy14616         66 -------L-EMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-G-AKMIEAIGTAYSSPH  130 (174)
Q Consensus        66 -------~-~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~  130 (174)
                             . ++..+.+.....|     ..+++++.|.+ +.   ...+.      +...... + ..++  |.++ +...
T Consensus        94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-t~---~a~na------LLk~LEepp~~~v~--Il~t-t~~~  160 (486)
T PRK14953         94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-TK---EAFNA------LLKTLEEPPPRTIF--ILCT-TEYD  160 (486)
T ss_pred             eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-CH---HHHHH------HHHHHhcCCCCeEE--EEEE-CCHH
Confidence                   0 0111111221111     13444455554 21   11111      1111111 2 2333  3333 4567


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .+++++.+||+++.|.+++.+++..+++.++..+
T Consensus       161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e  194 (486)
T PRK14953        161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE  194 (486)
T ss_pred             HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc
Confidence            7889999999999999999999999999876543

>KOG0728|consensus

Probab=99.62  E-value=9.2e-16  Score=112.43  Aligned_cols=139  Identities=23%  Similarity=0.288  Sum_probs=96.7

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-h-------hhhccCcEEEEEEeccCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-E-------TEMIEGEVVEIQIERPAT   92 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~i~~~~id~~~~   92 (174)
                      |...|+++|||||||||||.+|+++|+...|.  |+.++++.+...++++-.- .       .+-.|..++.+|||.+.+
T Consensus       177 GIaQPKGvlLygppgtGktLlaraVahht~c~--firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs  254 (404)
T KOG0728|consen  177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS  254 (404)
T ss_pred             CCCCCcceEEecCCCCchhHHHHHHHhhcceE--EEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccccc
Confidence            55567999999999999999999999998855  8999999988888776541 1       133588899999999843


Q ss_pred             CC------CCc-cceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHHh
Q psy14616         93 GL------GSK-VGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus        93 ~~------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~l  161 (174)
                      ..      +|+ .|...+. .+.++.+ ...+.+- .|.++ |+..-++|+|+  .|+ ..|+|++|+++...+||+.+-
T Consensus       255 ~r~e~~~ggdsevqrtmlellnqldgf-eatknik-vimat-nridild~allrpgridrkiefp~p~e~ar~~ilkihs  331 (404)
T KOG0728|consen  255 SRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIK-VIMAT-NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS  331 (404)
T ss_pred             ccccCCCCccHHHHHHHHHHHHhcccc-ccccceE-EEEec-cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence            32      121 1211111 0111111 1122222 14444 89999999999  678 789999999999999999876


Q ss_pred             chh
Q psy14616        162 VKN  164 (174)
Q Consensus       162 ~~~  164 (174)
                      .+.
T Consensus       332 rkm  334 (404)
T KOG0728|consen  332 RKM  334 (404)
T ss_pred             hhh
Confidence            543

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.62  E-value=3.2e-15  Score=124.20  Aligned_cols=146  Identities=16%  Similarity=0.088  Sum_probs=87.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCee--eecccccch-------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFT--SMAGSEIYS-------------   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~--~~~~~~~~~-------------   65 (174)
                      ++||++++   ..+..++..++.+ +++||+||+|+|||++|+++|+.++|.....  ...|+.|-.             
T Consensus        18 liGq~~i~---~~L~~~l~~~rl~-~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~   93 (620)
T PRK14948         18 LVGQEAIA---TTLKNALISNRIA-PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI   93 (620)
T ss_pred             ccChHHHH---HHHHHHHHcCCCC-ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence            68999999   4555566777765 7999999999999999999999998752110  011111100             


Q ss_pred             ----------hhhhhhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCC
Q psy14616         66 ----------LEMNKTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSS  128 (174)
Q Consensus        66 ----------~~~~~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~  128 (174)
                                ..+.++.+.+...+     ..+++++.|.+ +.   +.++..      ....+.+  ..+|  |.++ ++
T Consensus        94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-t~---~a~naL------LK~LEePp~~tvf--IL~t-~~  160 (620)
T PRK14948         94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-ST---AAFNAL------LKTLEEPPPRVVF--VLAT-TD  160 (620)
T ss_pred             EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-CH---HHHHHH------HHHHhcCCcCeEE--EEEe-CC
Confidence                      01111111111111     13444556555 22   112211      1111222  2334  4444 45


Q ss_pred             CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +..+.++++|||+.+.|.+++.+++..+++....+
T Consensus       161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k  195 (620)
T PRK14948        161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK  195 (620)
T ss_pred             hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence            67899999999999999999999999888875544

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=1.7e-15  Score=126.53  Aligned_cols=162  Identities=22%  Similarity=0.315  Sum_probs=102.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCC----ceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhh-hhhh--
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAG----RAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEM-NKTE--   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~----~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~-~~~~--   72 (174)
                      ||||++|+.++.......+.|...+    ..+||.||+|||||.+|++||..| |.+..+++++.+.+..... ....  
T Consensus       493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa  572 (786)
T COG0542         493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA  572 (786)
T ss_pred             eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC
Confidence            6999999999888888888776542    488999999999999999999998 4445567777665543211 0000  


Q ss_pred             --------------hhhhhcc-CcEEEEEEeccCCCC--------------CCccc-eeEEEeccchhhhccccccchhh
Q psy14616         73 --------------EETEMIE-GEVVEIQIERPATGL--------------GSKVG-KLTMKTTEMETSYDLGAKMIEAI  122 (174)
Q Consensus        73 --------------~~~~~~~-~~i~~~~id~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~i  122 (174)
                                    +..+..| ..|+++||+++ .+.              .|..+ .+.|+..-+-.+.+++...+...
T Consensus       573 PPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~  651 (786)
T COG0542         573 PPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD  651 (786)
T ss_pred             CCCCceeccccchhHhhhcCCCeEEEechhhhc-CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence                          1112222 36778899887 221              11222 34444444344444433222111


Q ss_pred             hcc--cCCC------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        123 GTA--YSSP------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       123 ~~~--~~~~------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +..  ....            ..+.|.++.|+ .+|.|.+++.+++.+|+...+..
T Consensus       652 ~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~  707 (786)
T COG0542         652 ADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR  707 (786)
T ss_pred             ccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence            100  0000            12689999999 69999999999999999987744

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.61  E-value=4e-15  Score=117.34  Aligned_cols=148  Identities=19%  Similarity=0.204  Sum_probs=89.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC--------C--eeeecccccch-hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT--------P--FTSMAGSEIYS-LEMN   69 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~--------~--~~~~~~~~~~~-~~~~   69 (174)
                      ++||+.++   ..+...+++|+.+ ++++||||||+|||++|+++|+.+++..        .  ...++...... .++.
T Consensus        19 iig~~~~~---~~l~~~i~~~~~~-~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~   94 (367)
T PRK14970         19 VVGQSHIT---NTLLNAIENNHLA-QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR   94 (367)
T ss_pred             cCCcHHHH---HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH
Confidence            68999998   6666677888765 8999999999999999999999987521        1  11122211110 1111


Q ss_pred             hhhhhhhhcc-----CcEEEEEEeccCCCCCCccceeEEEeccchhhhccc-cccchhhhcccCCCCCCCHHhhcceeeE
Q psy14616         70 KTEEETEMIE-----GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG-AKMIEAIGTAYSSPHGIPIDLLDRMVII  143 (174)
Q Consensus        70 ~~~~~~~~~~-----~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~l~sR~~~i  143 (174)
                      ...+.+...|     ..++++++|.+ +.   ...+..+     ....+.+ ...+  +.++ +....+.+++.|||..+
T Consensus        95 ~l~~~~~~~p~~~~~kiviIDE~~~l-~~---~~~~~ll-----~~le~~~~~~~~--Il~~-~~~~kl~~~l~sr~~~v  162 (367)
T PRK14970         95 NLIDQVRIPPQTGKYKIYIIDEVHML-SS---AAFNAFL-----KTLEEPPAHAIF--ILAT-TEKHKIIPTILSRCQIF  162 (367)
T ss_pred             HHHHHHhhccccCCcEEEEEeChhhc-CH---HHHHHHH-----HHHhCCCCceEE--EEEe-CCcccCCHHHHhcceeE
Confidence            2112221211     23445566655 21   1111111     1111112 2233  3344 45678999999999999


Q ss_pred             ecCCCCHHHHHHHHHHHhchh
Q psy14616        144 PTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       144 ~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++.+++++++..++.....++
T Consensus       163 ~~~~~~~~~l~~~l~~~~~~~  183 (367)
T PRK14970        163 DFKRITIKDIKEHLAGIAVKE  183 (367)
T ss_pred             ecCCccHHHHHHHHHHHHHHc
Confidence            999999999999998866443

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.61  E-value=3.8e-15  Score=123.67  Aligned_cols=147  Identities=18%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC-----------------------eee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP-----------------------FTS   57 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~-----------------------~~~   57 (174)
                      ||||++++   ..+..+++.|+.+ +.+||+||+|+|||++|+.+|+.++|..+                       +..
T Consensus        19 viGq~~~~---~~L~~~i~~~~l~-hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~   94 (614)
T PRK14971         19 VVGQEALT---TTLKNAIATNKLA-HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE   94 (614)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC-eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence            68999999   5566667888876 77999999999999999999999986421                       111


Q ss_pred             ecccccc-hhhhhhhhhhhhhcc----C-cEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCC
Q psy14616         58 MAGSEIY-SLEMNKTEEETEMIE----G-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSP  129 (174)
Q Consensus        58 ~~~~~~~-~~~~~~~~~~~~~~~----~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~  129 (174)
                      +++.+.. ..++....+.....|    . .+++++.|.+ +.   ..++.      +......+  +.+|  |.++ +..
T Consensus        95 ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-s~---~a~na------LLK~LEepp~~tif--IL~t-t~~  161 (614)
T PRK14971         95 LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-SQ---AAFNA------FLKTLEEPPSYAIF--ILAT-TEK  161 (614)
T ss_pred             ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-CH---HHHHH------HHHHHhCCCCCeEE--EEEe-CCc
Confidence            1111100 001111111111111    1 2344455554 22   11111      11122222  2333  3344 355


Q ss_pred             CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ..+.++++|||++++|.+++.+++..+++..+.++
T Consensus       162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e  196 (614)
T PRK14971        162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE  196 (614)
T ss_pred             hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc
Confidence            78999999999999999999999999998866554

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.61  E-value=2e-15  Score=116.64  Aligned_cols=143  Identities=16%  Similarity=0.228  Sum_probs=88.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC------eeeecc--cccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP------FTSMAG--SEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~------~~~~~~--~~~~~~~~~~~~   72 (174)
                      |+||++++   ..+...++.|+.+ +.+||+||+|+|||++|+.+|+.+.|...      +..+..  +..+  .+.++.
T Consensus         6 i~g~~~~~---~~l~~~~~~~~~~-ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i--~v~~ir   79 (313)
T PRK05564          6 IIGHENIK---NRIKNSIIKNRFS-HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSI--GVDDIR   79 (313)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCC--CHHHHH
Confidence            68999999   5556666888876 88899999999999999999999865421      111211  1111  111222


Q ss_pred             hhhh---hc----cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceeeE
Q psy14616         73 EETE---MI----EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVII  143 (174)
Q Consensus        73 ~~~~---~~----~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i  143 (174)
                      +..+   ..    ..+ +++.+.|++ +.   +.++..++.-+     +. +++.|  |.++ +.++.+.++++|||+++
T Consensus        80 ~~~~~~~~~p~~~~~kv~iI~~ad~m-~~---~a~naLLK~LE-----epp~~t~~--il~~-~~~~~ll~TI~SRc~~~  147 (313)
T PRK05564         80 NIIEEVNKKPYEGDKKVIIIYNSEKM-TE---QAQNAFLKTIE-----EPPKGVFI--ILLC-ENLEQILDTIKSRCQIY  147 (313)
T ss_pred             HHHHHHhcCcccCCceEEEEechhhc-CH---HHHHHHHHHhc-----CCCCCeEE--EEEe-CChHhCcHHHHhhceee
Confidence            1111   11    112 334455665 32   22332222111     11 22334  3344 45689999999999999


Q ss_pred             ecCCCCHHHHHHHHHHHh
Q psy14616        144 PTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       144 ~~~~~~~~e~~~il~~~l  161 (174)
                      .|.+++++++.+++++..
T Consensus       148 ~~~~~~~~~~~~~l~~~~  165 (313)
T PRK05564        148 KLNRLSKEEIEKFISYKY  165 (313)
T ss_pred             eCCCcCHHHHHHHHHHHh
Confidence            999999999999998753

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.61  E-value=2.8e-15  Score=117.61  Aligned_cols=48  Identities=27%  Similarity=0.497  Sum_probs=42.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ||||++++   ..+.+.+.+|+.+ |.+||+||+|+||+++|+++|+.+.|.
T Consensus        21 iiGq~~~~---~~L~~~~~~~rl~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~   68 (365)
T PRK07471         21 LFGHAAAE---AALLDAYRSGRLH-HAWLIGGPQGIGKATLAYRMARFLLAT   68 (365)
T ss_pred             ccChHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence            68999999   6666777888877 889999999999999999999999764

>KOG0740|consensus

Probab=99.61  E-value=1.5e-15  Score=119.31  Aligned_cols=160  Identities=18%  Similarity=0.203  Sum_probs=110.0

Q ss_pred             CCchHHHHHHHHHHH-------HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVL-------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~-------~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      +.|.+.+++.+....       +....-+.+.+.+||.||||+|||.+++++|-+.+  ..|..++++.+.+.++|+.+ 
T Consensus       155 i~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~--atff~iSassLtsK~~Ge~eK  232 (428)
T KOG0740|consen  155 IAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG--ATFFNISASSLTSKYVGESEK  232 (428)
T ss_pred             CcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc--ceEeeccHHHhhhhccChHHH
Confidence            357777886655433       22233445578999999999999999999999998  55888999999999998875 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCccc--eeEEEeccchhhhcc---cc-ccchhhhcccCCCCCCCHHhhcc
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSKVG--KLTMKTTEMETSYDL---GA-KMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~-~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                            ..+ ...|..++++|+|+++....+...  +..++..++.+....   ++ .++ .++++ |.|..++.+++.|
T Consensus       233 ~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvl-vigaT-N~P~e~Dea~~Rr  310 (428)
T KOG0740|consen  233 LVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVL-VIGAT-NRPWELDEAARRR  310 (428)
T ss_pred             HHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEE-EEecC-CCchHHHHHHHHH
Confidence                  223 334777888899988655422111  122222222211111   22 222 25565 9999999999999


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      | .+++++.|+.+....++.+.+.+.
T Consensus       311 f~kr~yiplPd~etr~~~~~~ll~~~  336 (428)
T KOG0740|consen  311 FVKRLYIPLPDYETRSLLWKQLLKEQ  336 (428)
T ss_pred             hhceeeecCCCHHHHHHHHHHHHHhC
Confidence            9 678889889999998888876443

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.60  E-value=7e-15  Score=124.85  Aligned_cols=154  Identities=20%  Similarity=0.235  Sum_probs=99.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh----------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL----------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----------   66 (174)
                      |+||+++++.+.......+.|..    |..+++|+||||||||++|+++|+.+++.  ++.++.+.+...          
T Consensus       456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~--~~~~d~se~~~~~~~~~lig~~  533 (731)
T TIGR02639       456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH--LERFDMSEYMEKHTVSRLIGAP  533 (731)
T ss_pred             eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC--eEEEeCchhhhcccHHHHhcCC
Confidence            68999999888877776665543    33468999999999999999999999743  566655443221          


Q ss_pred             --hhh-----hhhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCC-
Q psy14616         67 --EMN-----KTEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSP-  129 (174)
Q Consensus        67 --~~~-----~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  129 (174)
                        +++     .........| +.++++|+|++ ++   +.++.        .+.+ ......++.+.++  |+|++... 
T Consensus       534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-~~---~~~~~Ll~~ld~g~~~d-~~g~~vd~~~~ii--i~Tsn~g~~  606 (731)
T TIGR02639       534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-HP---DIYNILLQVMDYATLTD-NNGRKADFRNVIL--IMTSNAGAS  606 (731)
T ss_pred             CCCcccchhhHHHHHHHhCCCeEEEEechhhc-CH---HHHHHHHHhhccCeeec-CCCcccCCCCCEE--EECCCcchh
Confidence              000     1111112223 45677899887 32   11111        1111 1233445566666  55552110 


Q ss_pred             -----------------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        130 -----------------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 -----------------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                             ..+.|.+++|+ .++.|.+++.+++.+|+++.+.+
T Consensus       607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~  664 (731)
T TIGR02639       607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDE  664 (731)
T ss_pred             hhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence                                   12678999999 89999999999999999998754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.59  E-value=7.5e-15  Score=124.85  Aligned_cols=157  Identities=25%  Similarity=0.317  Sum_probs=101.3

Q ss_pred             CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |+|.+.+++.+..+....        .-|..+++++||+||||||||++|+++|..++.  +++.+++..+.+.+.+...
T Consensus       180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~i~i~~~~i~~~~~g~~~  257 (733)
T TIGR01243       180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YFISINGPEIMSKYYGESE  257 (733)
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eEEEEecHHHhcccccHHH
Confidence            468888887777665432        224456789999999999999999999999984  4777777666555544433


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCCcccee--EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-  138 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-  138 (174)
                             +.+ ...+..++++|+|.+....+...+..  .+..   ..+.........++  ++++ |++..+++++++ 
T Consensus       258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv--I~at-n~~~~ld~al~r~  334 (733)
T TIGR01243       258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV--IGAT-NRPDALDPALRRP  334 (733)
T ss_pred             HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE--Eeec-CChhhcCHHHhCc
Confidence                   111 22355678889988744321111100  0000   01111111222333  4455 888999999986 


Q ss_pred             -ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 -RM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 -R~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                       || ..+.++.|+.++..+|++....
T Consensus       335 gRfd~~i~i~~P~~~~R~~Il~~~~~  360 (733)
T TIGR01243       335 GRFDREIVIRVPDKRARKEILKVHTR  360 (733)
T ss_pred             hhccEEEEeCCcCHHHHHHHHHHHhc
Confidence             88 7899999999999999987553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.59  E-value=2.3e-15  Score=116.92  Aligned_cols=143  Identities=17%  Similarity=0.167  Sum_probs=85.4

Q ss_pred             CCc-hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-------------
Q psy14616          1 MVG-QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-------------   66 (174)
Q Consensus         1 iiG-~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------   66 (174)
                      |+| |+.++   ..+...+++|+.+ +.+||+||+|+|||++|+.+|+.+.|..+.....++.|.++             
T Consensus         7 i~~~q~~~~---~~L~~~~~~~~l~-ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~   82 (329)
T PRK08058          7 LTALQPVVV---KMLQNSIAKNRLS-HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL   82 (329)
T ss_pred             HHhhHHHHH---HHHHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence            456 99999   5666667888876 88899999999999999999999866431111111111110             


Q ss_pred             --------hhhhhhhhhh------hc-c-CcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCC
Q psy14616         67 --------EMNKTEEETE------MI-E-GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSS  128 (174)
Q Consensus        67 --------~~~~~~~~~~------~~-~-~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~  128 (174)
                              .+.++.+..+      .. . ..+++++.|++ +.   +.++..+      .+.+.  .++.|  |.++ +.
T Consensus        83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-~~---~a~NaLL------K~LEEPp~~~~~--Il~t-~~  149 (329)
T PRK08058         83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-TA---SAANSLL------KFLEEPSGGTTA--ILLT-EN  149 (329)
T ss_pred             eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-CH---HHHHHHH------HHhcCCCCCceE--EEEe-CC
Confidence                    0001111110      00 1 12333455544 22   2222211      12222  22333  3344 46


Q ss_pred             CCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      +..+.|+++|||++++|.+++.+++.++++..
T Consensus       150 ~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        150 KHQILPTILSRCQVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             hHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence            67999999999999999999999998888764

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.59  E-value=2.5e-15  Score=133.46  Aligned_cols=133  Identities=14%  Similarity=0.144  Sum_probs=85.0

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh----------hh--------------------
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE----------MN--------------------   69 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----------~~--------------------   69 (174)
                      -|..+++++||+||||||||.+|+++|.+.+  ++|+.++.+++....          ++                    
T Consensus      1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~--VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206       1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSY--VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred             cCCCCCCceEEECCCCCCHHHHHHHHHHhcC--CceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence            3556689999999999999999999999988  778888877665321          00                    


Q ss_pred             -----------hh---------hhhh-hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhh---ccccccchhhhcc
Q psy14616         70 -----------KT---------EEET-EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSY---DLGAKMIEAIGTA  125 (174)
Q Consensus        70 -----------~~---------~~~~-~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~  125 (174)
                                 ..         -+.| ...|+.|.++|||.+..... ....+......+....   ...++++  ||+|
T Consensus      1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-~~ltL~qLLneLDg~~~~~s~~~VIV--IAAT 1779 (2281)
T CHL00206       1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-NYLSLGLLVNSLSRDCERCSTRNILV--IAST 1779 (2281)
T ss_pred             hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-ceehHHHHHHHhccccccCCCCCEEE--EEeC
Confidence                       00         0222 33578889999999843311 1111101111121111   1123333  5555


Q ss_pred             cCCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHH
Q psy14616        126 YSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILK  158 (174)
Q Consensus       126 ~~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~  158 (174)
                       |+|..+||||++  || ..|.++.|+..+..+++.
T Consensus      1780 -NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206       1780 -HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred             -CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence             999999999996  99 788888777666655554

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=7.8e-15  Score=121.71  Aligned_cols=147  Identities=20%  Similarity=0.183  Sum_probs=86.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeee-eccccc----------------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTS-MAGSEI----------------   63 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~-~~~~~~----------------   63 (174)
                      ||||+++++   .+...+.+++.+ +.+||+||+|+|||++|+.+|+.++|...... ..|+.+                
T Consensus        18 iiGq~~~~~---~L~~~i~~~~i~-~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~   93 (585)
T PRK14950         18 LVGQEHVVQ---TLRNAIAEGRVA-HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE   93 (585)
T ss_pred             hcCCHHHHH---HHHHHHHhCCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence            689999994   455566777754 78899999999999999999999976432110 011111                


Q ss_pred             ------ch-hhhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCC
Q psy14616         64 ------YS-LEMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        64 ------~~-~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~  130 (174)
                            .. .++..+.+.....     ...++++++|.+ +.   +..+..++     ...+. .+.+|  |..+ +...
T Consensus        94 i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-~~---~a~naLLk-----~LEepp~~tv~--Il~t-~~~~  161 (585)
T PRK14950         94 MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-ST---AAFNALLK-----TLEEPPPHAIF--ILAT-TEVH  161 (585)
T ss_pred             EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-CH---HHHHHHHH-----HHhcCCCCeEE--EEEe-CChh
Confidence                  00 0111111111111     112344455554 21   11111111     01111 22333  3344 4567


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .+.++++|||+++.|.+++.+++..+++....+
T Consensus       162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~  194 (585)
T PRK14950        162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA  194 (585)
T ss_pred             hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999999999886544

>KOG0652|consensus

Probab=99.58  E-value=4.1e-15  Score=109.63  Aligned_cols=143  Identities=20%  Similarity=0.254  Sum_probs=93.0

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----h----hhhhccCcEEEEEEeccC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----E----ETEMIEGEVVEIQIERPA   91 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~~~~id~~~   91 (174)
                      -|..||+++|+|||||||||.+|++-|...+.  .|..+.+-.+..++++.-.    |    ..+..|..|+++|+|.+.
T Consensus       200 lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--TFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIG  277 (424)
T KOG0652|consen  200 LGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIG  277 (424)
T ss_pred             cCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--hHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhc
Confidence            46778899999999999999999999987763  3555554444444443322    1    124567788889999873


Q ss_pred             CCC------CC-ccceeEEEeccchhhhcccccc-chhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHH
Q psy14616         92 TGL------GS-KVGKLTMKTTEMETSYDLGAKM-IEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus        92 ~~~------~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~  160 (174)
                      .+.      ++ +.|...+  ..+.+...++..- +-.|+++ |+..-++|+|+  .|+ ..|+|+.|+++...+|++.+
T Consensus       278 tKRfDSek~GDREVQRTML--ELLNQLDGFss~~~vKviAAT-NRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIH  354 (424)
T KOG0652|consen  278 TKRFDSEKAGDREVQRTML--ELLNQLDGFSSDDRVKVIAAT-NRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIH  354 (424)
T ss_pred             cccccccccccHHHHHHHH--HHHHhhcCCCCccceEEEeec-ccccccCHHHhhcccccccccCCCCChHHHHHHHHHh
Confidence            332      11 1111111  1122222332221 1114555 99999999998  677 78999999999999999988


Q ss_pred             hchhhhh
Q psy14616        161 LVKNERN  167 (174)
Q Consensus       161 l~~~~~~  167 (174)
                      -.+....
T Consensus       355 sRKMnv~  361 (424)
T KOG0652|consen  355 SRKMNVS  361 (424)
T ss_pred             hhhcCCC
Confidence            7665433

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.58  E-value=7.1e-15  Score=124.25  Aligned_cols=154  Identities=20%  Similarity=0.222  Sum_probs=99.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-----hhh--
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-----EMN--   69 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~~~--   69 (174)
                      |+||+++++.+.......+.|..    |..++||+||||||||++|+.+|+.++  .+++.++++.+...     .++  
T Consensus       460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~~i~id~se~~~~~~~~~LiG~~  537 (758)
T PRK11034        460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAP  537 (758)
T ss_pred             EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CCcEEeechhhcccccHHHHcCCC
Confidence            68999999888888777665543    234799999999999999999999997  45666665544220     111  


Q ss_pred             ----------hhhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCC--
Q psy14616         70 ----------KTEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSS--  128 (174)
Q Consensus        70 ----------~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~--  128 (174)
                                .+.+.....| +.++++|+|++ +.   +.++.        .+.+. .....++.++++  |+|++..  
T Consensus       538 ~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-~~---~v~~~LLq~ld~G~ltd~-~g~~vd~rn~ii--I~TsN~g~~  610 (758)
T PRK11034        538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-HP---DVFNLLLQVMDNGTLTDN-NGRKADFRNVVL--VMTTNAGVR  610 (758)
T ss_pred             CCcccccccchHHHHHHhCCCcEEEeccHhhh-hH---HHHHHHHHHHhcCeeecC-CCceecCCCcEE--EEeCCcCHH
Confidence                      0011111123 46778899988 32   11111        11111 122345556666  5565311  


Q ss_pred             ----------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 ----------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                            ...+.|.++.|+ .++.|.+++.+++.+|+...+.+
T Consensus       611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~  668 (758)
T PRK11034        611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE  668 (758)
T ss_pred             HHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence                                  022679999999 79999999999999999887754

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.58  E-value=6.8e-15  Score=123.18  Aligned_cols=159  Identities=20%  Similarity=0.292  Sum_probs=104.3

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      +.|.+.++..+..+....+.       +...+++++|+||||||||++++++|..++  .++..++++++.....+... 
T Consensus       154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~--~~f~~is~~~~~~~~~g~~~~  231 (644)
T PRK10733        154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMFVGVGAS  231 (644)
T ss_pred             HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CCEEEEehHHhHHhhhcccHH
Confidence            35778888777777665542       222357899999999999999999999998  55777777665544433322 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCc------cc--eeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSK------VG--KLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            ..+ ...|..++++|+|.+....+..      ..  .+.-....++...+....++  |+++ |++..++++++
T Consensus       232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv--IaaT-N~p~~lD~Al~  308 (644)
T PRK10733        232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV--IAAT-NRPDVLDPALL  308 (644)
T ss_pred             HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE--EEec-CChhhcCHHHh
Confidence                  222 2346678888999874332110      00  00000011122222223344  5555 89999999999


Q ss_pred             c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +  || ..+.++.|+.++..+|++.++.+.
T Consensus       309 RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~  338 (644)
T PRK10733        309 RPGRFDRQVVVGLPDVRGREQILKVHMRRV  338 (644)
T ss_pred             CCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence            5  99 889999999999999999987654

>KOG0727|consensus

Probab=99.58  E-value=8.7e-16  Score=112.67  Aligned_cols=138  Identities=22%  Similarity=0.261  Sum_probs=92.3

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----hhh----hhccCcEEEEEEeccCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----EET----EMIEGEVVEIQIERPAT   92 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~i~~~~id~~~~   92 (174)
                      |.-|++++|+|||||||||++++++|+...  ..|+.+.++.+..+++++-.    |.-    +..|..++++|+|.+..
T Consensus       185 gidpprgvllygppg~gktml~kava~~t~--a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiat  262 (408)
T KOG0727|consen  185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT  262 (408)
T ss_pred             CCCCCcceEEeCCCCCcHHHHHHHHhhccc--hheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh
Confidence            666789999999999999999999999775  55888998888877776643    222    44577888899998732


Q ss_pred             C-C----C--CccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHHh
Q psy14616         93 G-L----G--SKVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus        93 ~-~----~--~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~l  161 (174)
                      + +    +  .+.|.+.+. .+.++.+..-.|+-+  |+++ |+...++|+|+  .|+ ..|+|+-++..+.+-+..-..
T Consensus       263 krfdaqtgadrevqril~ellnqmdgfdq~~nvkv--imat-nradtldpallrpgrldrkiefplpdrrqkrlvf~tit  339 (408)
T KOG0727|consen  263 KRFDAQTGADREVQRILIELLNQMDGFDQTTNVKV--IMAT-NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT  339 (408)
T ss_pred             hhccccccccHHHHHHHHHHHHhccCcCcccceEE--EEec-CcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence            2 2    1  122322211 122233322334333  4555 89999999999  688 789999777666655554443


Q ss_pred             ch
Q psy14616        162 VK  163 (174)
Q Consensus       162 ~~  163 (174)
                      .+
T Consensus       340 sk  341 (408)
T KOG0727|consen  340 SK  341 (408)
T ss_pred             hc
Confidence            33

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.58  E-value=5.8e-15  Score=125.37  Aligned_cols=155  Identities=22%  Similarity=0.204  Sum_probs=90.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      +||+++.+..   +...+....  ..+++|+||||||||++++++|+.+-.        ...+..++.+.+..  .+.++
T Consensus       184 ~igr~~ei~~---~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~  258 (731)
T TIGR02639       184 LIGREDELER---TIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGD  258 (731)
T ss_pred             ccCcHHHHHH---HHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccch
Confidence            5898888854   444444433  359999999999999999999998711        12344555444431  22233


Q ss_pred             hh-------hhhhh-ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC----CCCCCCHHhhc
Q psy14616         71 TE-------EETEM-IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----SPHGIPIDLLD  138 (174)
Q Consensus        71 ~~-------~~~~~-~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~l~s  138 (174)
                      .+       +.+.. .+..++++|+|.++.......+..... ..+......+...+  |++|+.    +....++++.+
T Consensus       259 ~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L~~~l~~g~i~~--IgaTt~~e~~~~~~~d~al~r  335 (731)
T TIGR02639       259 FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLLKPALSSGKLRC--IGSTTYEEYKNHFEKDRALSR  335 (731)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHHHHHHhCCCeEE--EEecCHHHHHHHhhhhHHHHH
Confidence            22       22211 133556667777643211111110000 00111112222233  676653    23568999999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ||+.|++.+|+.++..+||+.....
T Consensus       336 Rf~~i~v~~p~~~~~~~il~~~~~~  360 (731)
T TIGR02639       336 RFQKIDVGEPSIEETVKILKGLKEK  360 (731)
T ss_pred             hCceEEeCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999986543

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.57  E-value=6.5e-15  Score=120.83  Aligned_cols=156  Identities=20%  Similarity=0.231  Sum_probs=94.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC--------CCCCeeeeccccc------ch-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG--------PDTPFTSMAGSEI------YS-   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~--------~~~~~~~~~~~~~------~~-   65 (174)
                      ++||+.+++.+...   +....  +.+++|+||||||||++|+++.+...        .+.+|+.+++...      +. 
T Consensus        67 iiGqs~~i~~l~~a---l~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~  141 (531)
T TIGR02902        67 IIGQEEGIKALKAA---LCGPN--PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIAD  141 (531)
T ss_pred             eeCcHHHHHHHHHH---HhCCC--CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccch
Confidence            58999998666543   33322  36999999999999999999987532        1245777776431      00 


Q ss_pred             hhhhhhhh-----------------hh---hhc-cCcEEEEEEeccCCCCCCccce----------eEEEeccch-----
Q psy14616         66 LEMNKTEE-----------------ET---EMI-EGEVVEIQIERPATGLGSKVGK----------LTMKTTEME-----  109 (174)
Q Consensus        66 ~~~~~~~~-----------------~~---~~~-~~~i~~~~id~~~~~~~~~~~~----------~~~~~~~~~-----  109 (174)
                      ..++...+                 ..   ... .|.++++++|++ +.   ..++          ..+...+..     
T Consensus       142 ~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-~~---~~q~~LL~~Le~~~~~~~~~~~~~~~~~  217 (531)
T TIGR02902       142 PLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-HP---VQMNKLLKVLEDRKVFLDSAYYNSENPN  217 (531)
T ss_pred             hhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-CH---HHHHHHHHHHHhCeeeeccccccccCcc
Confidence            00000000                 00   011 245667788877 33   1222          111110000     


Q ss_pred             ------hhh-ccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        110 ------TSY-DLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       110 ------~~~-~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                            ..+ .--+.-+..+++|++.+..++|++++||..+.|++|+.+|+.+++++.+.+..
T Consensus       218 ~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~  280 (531)
T TIGR02902       218 IPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIG  280 (531)
T ss_pred             cccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcC
Confidence                  000 01112233367777889999999999999999999999999999999876543

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.56  E-value=9.5e-15  Score=114.07  Aligned_cols=143  Identities=19%  Similarity=0.286  Sum_probs=85.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC-----Ceeee-cccccchhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT-----PFTSM-AGSEIYSLE-------   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~-----~~~~~-~~~~~~~~~-------   67 (174)
                      ++||++++   ..+..++++|+.+ +.+||+||+|+|||++|+.+|+.+.|..     +.... .++.+..+.       
T Consensus        25 l~Gh~~a~---~~L~~a~~~grl~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~h  100 (351)
T PRK09112         25 LFGHEEAE---AFLAQAYREGKLH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAH  100 (351)
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCC
Confidence            68999999   6777777889876 7899999999999999999999997621     11000 111110000       


Q ss_pred             ----------------------hhhhhhhhhhc-----cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--c
Q psy14616         68 ----------------------MNKTEEETEMI-----EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--G  115 (174)
Q Consensus        68 ----------------------~~~~~~~~~~~-----~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~  115 (174)
                                            +.++.+..+.+     .|   .+++++.|.+ +.   ..++..++      ....  .
T Consensus       101 Pdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-~~---~aanaLLk------~LEEpp~  170 (351)
T PRK09112        101 PNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-NR---NAANAILK------TLEEPPA  170 (351)
T ss_pred             CCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-CH---HHHHHHHH------HHhcCCC
Confidence                                  00000000000     11   2334455544 22   11221111      1111  2


Q ss_pred             cccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        116 AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       116 ~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      +..|  +..+ +.+..+.|+++|||+.++|++++.+++.++|+..
T Consensus       171 ~~~f--iLit-~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        171 RALF--ILIS-HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL  212 (351)
T ss_pred             CceE--EEEE-CChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence            2333  2333 4577889999999999999999999999999984

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.56  E-value=2e-14  Score=111.12  Aligned_cols=144  Identities=20%  Similarity=0.230  Sum_probs=86.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhh-hhhhhh---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNK-TEEETE---   76 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~---   76 (174)
                      ++||+++++   .+...+++|+.+ +.++|+||||+|||++|+++++.++.+  +..+++.......+.. ..+...   
T Consensus        23 ~~~~~~~~~---~l~~~~~~~~~~-~~lll~G~~G~GKT~la~~l~~~~~~~--~~~i~~~~~~~~~i~~~l~~~~~~~~   96 (316)
T PHA02544         23 CILPAADKE---TFKSIVKKGRIP-NMLLHSPSPGTGKTTVAKALCNEVGAE--VLFVNGSDCRIDFVRNRLTRFASTVS   96 (316)
T ss_pred             hcCcHHHHH---HHHHHHhcCCCC-eEEEeeCcCCCCHHHHHHHHHHHhCcc--ceEeccCcccHHHHHHHHHHHHHhhc
Confidence            589999995   455555677765 566669999999999999999998754  4555554411001101 111111   


Q ss_pred             h--ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHH
Q psy14616         77 M--IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQ  154 (174)
Q Consensus        77 ~--~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~  154 (174)
                      .  ..+.++++++|.+...   +.+.. +. ..++..  ..+..+  +.++ |....++++++|||..+.++.|+.++..
T Consensus        97 ~~~~~~vliiDe~d~l~~~---~~~~~-L~-~~le~~--~~~~~~--Ilt~-n~~~~l~~~l~sR~~~i~~~~p~~~~~~  166 (316)
T PHA02544         97 LTGGGKVIIIDEFDRLGLA---DAQRH-LR-SFMEAY--SKNCSF--IITA-NNKNGIIEPLRSRCRVIDFGVPTKEEQI  166 (316)
T ss_pred             ccCCCeEEEEECcccccCH---HHHHH-HH-HHHHhc--CCCceE--EEEc-CChhhchHHHHhhceEEEeCCCCHHHHH
Confidence            1  1234566677765121   11111 11 001110  122333  4455 6778899999999999999999998888


Q ss_pred             HHHHHH
Q psy14616        155 AILKIR  160 (174)
Q Consensus       155 ~il~~~  160 (174)
                      ++++..
T Consensus       167 ~il~~~  172 (316)
T PHA02544        167 EMMKQM  172 (316)
T ss_pred             HHHHHH
Confidence            776653

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.56  E-value=2e-14  Score=111.88  Aligned_cols=146  Identities=16%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---Ceeeecccccchhh----------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---PFTSMAGSEIYSLE----------   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~----------   67 (174)
                      ++|++.+++.+..   +++++..+  +++|+||||||||++|+++++.+.+..   .+..+++.++....          
T Consensus        17 ~~g~~~~~~~L~~---~~~~~~~~--~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   91 (337)
T PRK12402         17 ILGQDEVVERLSR---AVDSPNLP--HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF   91 (337)
T ss_pred             hcCCHHHHHHHHH---HHhCCCCc--eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence            5799998855544   45666544  799999999999999999999985432   34555554332100          


Q ss_pred             ---hh-----------hhh----hhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhc-cc-cccchhh
Q psy14616         68 ---MN-----------KTE----EETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-LG-AKMIEAI  122 (174)
Q Consensus        68 ---~~-----------~~~----~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i  122 (174)
                         .+           ...    ..+...     ...++++++|.+ +.   ..+..      +....+ .+ ...+  +
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-~~---~~~~~------L~~~le~~~~~~~~--I  159 (337)
T PRK12402         92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-RE---DAQQA------LRRIMEQYSRTCRF--I  159 (337)
T ss_pred             hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-CH---HHHHH------HHHHHHhccCCCeE--E
Confidence               00           000    000111     123555566655 21   11110      111111 11 2223  3


Q ss_pred             hcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       123 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .++ +.+..+.+++.+||..+.+.+++.+++.++++....++
T Consensus       160 l~~-~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~  200 (337)
T PRK12402        160 IAT-RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE  200 (337)
T ss_pred             EEe-CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc
Confidence            344 34567888999999999999999999999999876543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.56  E-value=1.7e-14  Score=123.75  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-C-------Ceeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-T-------PFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~-------~~~~~~~~~~~~--~~~~~   70 (174)
                      +|||++.+   .++...+..+..  .+++|+||||||||++++.+|+.+... +       .+..++.+.+..  .+.++
T Consensus       189 ~iGr~~ei---~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge  263 (852)
T TIGR03345       189 VLGRDDEI---RQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE  263 (852)
T ss_pred             ccCCHHHH---HHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence            68999876   444444444433  499999999999999999999988322 1       123333322221  12222


Q ss_pred             hh-------hhhhhc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC----CCCCCCHHhh
Q psy14616         71 TE-------EETEMI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----SPHGIPIDLL  137 (174)
Q Consensus        71 ~~-------~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~l~  137 (174)
                      .+       +.....  +..++++|+|.+.... ...+.... .+.+......+...+  |++|+.    +...++++|.
T Consensus       264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g-~~~~~~d~-~n~Lkp~l~~G~l~~--IgaTT~~e~~~~~~~d~AL~  339 (852)
T TIGR03345       264 FENRLKSVIDEVKASPQPIILFIDEAHTLIGAG-GQAGQGDA-ANLLKPALARGELRT--IAATTWAEYKKYFEKDPALT  339 (852)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCC-CccccccH-HHHhhHHhhCCCeEE--EEecCHHHHhhhhhccHHHH
Confidence            22       222111  2234555666663221 11111110 011122222233333  777754    3356899999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      +||++|.+++|+.++..+||+...
T Consensus       340 rRf~~i~v~eps~~~~~~iL~~~~  363 (852)
T TIGR03345       340 RRFQVVKVEEPDEETAIRMLRGLA  363 (852)
T ss_pred             HhCeEEEeCCCCHHHHHHHHHHHH
Confidence            999999999999999999986543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG0744|consensus

Probab=99.55  E-value=4.1e-15  Score=112.18  Aligned_cols=141  Identities=23%  Similarity=0.345  Sum_probs=95.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC-------CCCeeeecccccchhhhhhhhh--------hhhhc--cCcEEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP-------DTPFTSMAGSEIYSLEMNKTEE--------ETEMI--EGEVVEIQI   87 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~i~~~~i   87 (174)
                      .+.+||+||||||||++++++|++|..       ....+.+++.++++++.++...        ..++.  ++..++.-|
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI  256 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI  256 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            468999999999999999999999822       2345789999999998877651        12222  556666666


Q ss_pred             ecc----CCCC----CC-ccceeEEEecc---chhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCCCCHHHHH
Q psy14616         88 ERP----ATGL----GS-KVGKLTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQ  154 (174)
Q Consensus        88 d~~----~~~~----~~-~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~  154 (174)
                      |+.    ....    +. +.-.++....-   +++....+|+++  ++|+ |-.+.++.++.+|- .+.++.+|+.+.++
T Consensus       257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli--L~TS-Nl~~siD~AfVDRADi~~yVG~Pt~~ai~  333 (423)
T KOG0744|consen  257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI--LATS-NLTDSIDVAFVDRADIVFYVGPPTAEAIY  333 (423)
T ss_pred             HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE--Eecc-chHHHHHHHhhhHhhheeecCCccHHHHH
Confidence            654    0110    01 11112222222   333333455555  5565 88899999999999 77888999999999


Q ss_pred             HHHHHHhchhhhhh
Q psy14616        155 AILKIRLVKNERNE  168 (174)
Q Consensus       155 ~il~~~l~~~~~~~  168 (174)
                      +|++..+..-....
T Consensus       334 ~IlkscieEL~~~g  347 (423)
T KOG0744|consen  334 EILKSCIEELISSG  347 (423)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999876554443

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.55  E-value=6.6e-15  Score=114.05  Aligned_cols=134  Identities=20%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--------------------------h
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--------------------------E   67 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--------------------------~   67 (174)
                      +..++.+|+.+ |.+||+||+|+|||++|+.+|+.+.|..+.....|+.|.++                          +
T Consensus        12 ~~~~~~~~r~~-ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~   90 (328)
T PRK05707         12 WQQLAGRGRHP-HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ   90 (328)
T ss_pred             HHHHHHCCCcc-eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence            34455667765 88999999999999999999999987532211122222111                          1


Q ss_pred             hhhhhhhhhhc----cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcce
Q psy14616         68 MNKTEEETEMI----EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRM  140 (174)
Q Consensus        68 ~~~~~~~~~~~----~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~  140 (174)
                      +....+.....    ..+ +++++.|++ +.   +.++..++      +.+.  .+..|  |.++ +.+..++|+++|||
T Consensus        91 iR~l~~~~~~~~~~~~~kv~iI~~a~~m-~~---~aaNaLLK------~LEEPp~~~~f--iL~t-~~~~~ll~TI~SRc  157 (328)
T PRK05707         91 VRELVSFVVQTAQLGGRKVVLIEPAEAM-NR---NAANALLK------SLEEPSGDTVL--LLIS-HQPSRLLPTIKSRC  157 (328)
T ss_pred             HHHHHHHHhhccccCCCeEEEECChhhC-CH---HHHHHHHH------HHhCCCCCeEE--EEEE-CChhhCcHHHHhhc
Confidence            11111111111    112 233345554 22   22222222      1222  23444  4444 57788999999999


Q ss_pred             eeEecCCCCHHHHHHHHHHHh
Q psy14616        141 VIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       141 ~~i~~~~~~~~e~~~il~~~l  161 (174)
                      +.+.|.+++.++..++|....
T Consensus       158 ~~~~~~~~~~~~~~~~L~~~~  178 (328)
T PRK05707        158 QQQACPLPSNEESLQWLQQAL  178 (328)
T ss_pred             eeeeCCCcCHHHHHHHHHHhc
Confidence            999999999999999998753

>KOG0735|consensus

Probab=99.55  E-value=2.6e-14  Score=117.09  Aligned_cols=156  Identities=23%  Similarity=0.272  Sum_probs=109.1

Q ss_pred             CchHHHHHHHHHHHHHHH--------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          2 VGQLQARRAAGVVLGMIK--------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~--------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      =|..++++.+.....+-.        .+..-+.++|||||||||||.+|.++|...+  ..|+.+.+-++.++++|..++
T Consensus       670 gg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~--~~fisvKGPElL~KyIGaSEq  747 (952)
T KOG0735|consen  670 GGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN--LRFISVKGPELLSKYIGASEQ  747 (952)
T ss_pred             ccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC--eeEEEecCHHHHHHHhcccHH
Confidence            367788866665553321        1222246999999999999999999999877  668999999999999999874


Q ss_pred             hh-hh-------ccCcEEEEEEeccCCCCC-Ccccee-EEE---eccchhhhccccccchhhhcccCCCCCCCHHhh--c
Q psy14616         74 ET-EM-------IEGEVVEIQIERPATGLG-SKVGKL-TMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--D  138 (174)
Q Consensus        74 ~~-~~-------~~~~i~~~~id~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--s  138 (174)
                      .. ++       .|+..+++|+|.+..+.| |..+.. +..   ...++....+..+.+  +|+| .++.-++|+|+  .
T Consensus       748 ~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i--~aaT-sRpdliDpALLRpG  824 (952)
T KOG0735|consen  748 NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI--LAAT-SRPDLIDPALLRPG  824 (952)
T ss_pred             HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE--EEec-CCccccCHhhcCCC
Confidence            32 22       478899999999865553 222211 111   122344444555554  5555 69999999999  6


Q ss_pred             ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 RM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      |+ ..+.-+.|++.+..+|++....
T Consensus       825 RlD~~v~C~~P~~~eRl~il~~ls~  849 (952)
T KOG0735|consen  825 RLDKLVYCPLPDEPERLEILQVLSN  849 (952)
T ss_pred             ccceeeeCCCCCcHHHHHHHHHHhh
Confidence            88 6677888899999999887443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.54  E-value=7e-14  Score=120.05  Aligned_cols=156  Identities=25%  Similarity=0.331  Sum_probs=96.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcC---Cc-eEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchh---------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIA---GR-AILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSL---------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~---~~-~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~---------   66 (174)
                      |+||+++++.+.......+.|...   |. .+||+||||||||++|+++|+.+ +....++.++.+.+...         
T Consensus       568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~  647 (852)
T TIGR03345       568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGS  647 (852)
T ss_pred             EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCC
Confidence            689999998888777776665432   23 58999999999999999999988 33345566665443211         


Q ss_pred             ---hhhh-----hhhhhhhc-cCcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccC--
Q psy14616         67 ---EMNK-----TEEETEMI-EGEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYS--  127 (174)
Q Consensus        67 ---~~~~-----~~~~~~~~-~~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~--  127 (174)
                         +++.     +.+..... .+.++++|+|++ +..   ..++        .+.+ ......++.+.++  |+|++.  
T Consensus       648 ~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-~~~---v~~~Llq~ld~g~l~d-~~Gr~vd~~n~ii--I~TSNlg~  720 (852)
T TIGR03345       648 PPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-HPD---VLELFYQVFDKGVMED-GEGREIDFKNTVI--LLTSNAGS  720 (852)
T ss_pred             CCCcccccccchHHHHHHhCCCcEEEEechhhc-CHH---HHHHHHHHhhcceeec-CCCcEEeccccEE--EEeCCCch
Confidence               1110     11111112 346778888876 221   1110        1111 1122333444444  333311  


Q ss_pred             --------C----C--------------CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        128 --------S----P--------------HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       128 --------~----~--------------~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                              .    +              ..+.|++++|+.+|.|.+++.+++.+|+...+..
T Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~  782 (852)
T TIGR03345       721 DLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDR  782 (852)
T ss_pred             HHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHH
Confidence                    0    0              1278999999999999999999999999998755

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.53  E-value=2.4e-14  Score=102.94  Aligned_cols=136  Identities=23%  Similarity=0.321  Sum_probs=78.8

Q ss_pred             HHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee--cccccchhhh
Q psy14616         13 VVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM--AGSEIYSLEM   68 (174)
Q Consensus        13 ~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~--~~~~~~~~~~   68 (174)
                      .+.+.+++++.+ +.+||+||+|+|||++|+.+++.+.+..+                      +..+  ....+....+
T Consensus         3 ~l~~~i~~~~~~-~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i   81 (188)
T TIGR00678         3 QLKRALEKGRLA-HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV   81 (188)
T ss_pred             HHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence            456677788765 78999999999999999999999865311                      1111  1111100111


Q ss_pred             hhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeE
Q psy14616         69 NKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVII  143 (174)
Q Consensus        69 ~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i  143 (174)
                      ..+.+.....     ...++++++|++ +.   +.++..+.  .++..  -....+  +.++ +....+.++++|||+++
T Consensus        82 ~~i~~~~~~~~~~~~~kviiide~~~l-~~---~~~~~Ll~--~le~~--~~~~~~--il~~-~~~~~l~~~i~sr~~~~  150 (188)
T TIGR00678        82 RELVEFLSRTPQESGRRVVIIEDAERM-NE---AAANALLK--TLEEP--PPNTLF--ILIT-PSPEKLLPTIRSRCQVL  150 (188)
T ss_pred             HHHHHHHccCcccCCeEEEEEechhhh-CH---HHHHHHHH--HhcCC--CCCeEE--EEEE-CChHhChHHHHhhcEEe
Confidence            1111222211     113444566655 22   11211111  01110  012333  3344 35578999999999999


Q ss_pred             ecCCCCHHHHHHHHHHH
Q psy14616        144 PTQPYQDEEIQAILKIR  160 (174)
Q Consensus       144 ~~~~~~~~e~~~il~~~  160 (174)
                      .|.+++.+++.+++++.
T Consensus       151 ~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       151 PFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             eCCCCCHHHHHHHHHHc
Confidence            99999999999999885

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.52  E-value=5.8e-15  Score=103.72  Aligned_cols=46  Identities=33%  Similarity=0.572  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ||+.+.   ..+...+++++.+ +.+||+||+|+||+++|+++|+.+.+.
T Consensus         1 gq~~~~---~~L~~~~~~~~l~-ha~L~~G~~g~gk~~~a~~~a~~ll~~   46 (162)
T PF13177_consen    1 GQEEII---ELLKNLIKSGRLP-HALLFHGPSGSGKKTLALAFARALLCS   46 (162)
T ss_dssp             S-HHHH---HHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-T
T ss_pred             CcHHHH---HHHHHHHHcCCcc-eeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            899998   6666677889887 889999999999999999999998654

...

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.52  E-value=5.2e-14  Score=120.86  Aligned_cols=158  Identities=20%  Similarity=0.237  Sum_probs=92.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLE--------   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~--------   67 (174)
                      |+||+++++.+.......+.|..    |...++|+||+|||||++|+++|+.+. ....++.++.+.+....        
T Consensus       511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~  590 (821)
T CHL00095        511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS  590 (821)
T ss_pred             CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence            68999999888776655555432    224689999999999999999999883 33456666654432110        


Q ss_pred             ----h-----hhhhhhhhhcc-CcEEEEEEeccCCCCC------CccceeEEEeccchhhhccccccchhhhcccC----
Q psy14616         68 ----M-----NKTEEETEMIE-GEVVEIQIERPATGLG------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS----  127 (174)
Q Consensus        68 ----~-----~~~~~~~~~~~-~~i~~~~id~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----  127 (174)
                          +     +...+.....| ..++++++|++.....      -+.+.+  .+. .....+..+++|  |+|++.    
T Consensus       591 ~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~--~d~-~g~~v~~~~~i~--I~Tsn~g~~~  665 (821)
T CHL00095        591 PPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRL--TDS-KGRTIDFKNTLI--IMTSNLGSKV  665 (821)
T ss_pred             CCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCce--ecC-CCcEEecCceEE--EEeCCcchHH
Confidence                0     01111112223 3566778888721110      000000  000 011122222222  222210    


Q ss_pred             ------------------C-C-------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        128 ------------------S-P-------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       128 ------------------~-~-------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                        . .             ..+.|.+++|+ .++.|.+++.+++.+|+...+.+
T Consensus       666 i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~  734 (821)
T CHL00095        666 IETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN  734 (821)
T ss_pred             HHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence                              0 0             11578999999 99999999999999999998764

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.51  E-value=3.4e-14  Score=109.57  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh----------------------
Q psy14616         10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE----------------------   67 (174)
Q Consensus        10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----------------------   67 (174)
                      .-+.+...+.+|+.+ |.+||+||+|+||+++|+.+|+.+.|..+.....|+.|.++.                      
T Consensus        10 ~~~~l~~~~~~~rl~-HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~   88 (325)
T PRK06871         10 TYQQITQAFQQGLGH-HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG   88 (325)
T ss_pred             HHHHHHHHHHcCCcc-eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence            346677788889887 899999999999999999999999775322112233221110                      


Q ss_pred             hhhhhh---hhhhcc--C--c-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhh
Q psy14616         68 MNKTEE---ETEMIE--G--E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        68 ~~~~~~---~~~~~~--~--~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                      +.++.+   .....+  |  + +++++.|++ +.   +.+|..++      +.+.+  ++.|  |.++ +.+..+.|+++
T Consensus        89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-~~---~AaNaLLK------tLEEPp~~~~f--iL~t-~~~~~llpTI~  155 (325)
T PRK06871         89 VDQVREINEKVSQHAQQGGNKVVYIQGAERL-TE---AAANALLK------TLEEPRPNTYF--LLQA-DLSAALLPTIY  155 (325)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEechhhh-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChHhCchHHH
Confidence            000000   000011  1  2 333455555 22   22222222      11222  2334  3344 57889999999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      |||+.+.|.+++.+++.++|+...
T Consensus       156 SRC~~~~~~~~~~~~~~~~L~~~~  179 (325)
T PRK06871        156 SRCQTWLIHPPEEQQALDWLQAQS  179 (325)
T ss_pred             hhceEEeCCCCCHHHHHHHHHHHh
Confidence            999999999999999999998753

>KOG0726|consensus

Probab=99.50  E-value=4.9e-15  Score=110.64  Aligned_cols=146  Identities=19%  Similarity=0.244  Sum_probs=99.0

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPAT   92 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~~   92 (174)
                      |..||++++|||+||||||.||+++|+...  ..|..+.+++++..+.+.-.       ..+ +..|..++++|||.+..
T Consensus       215 GikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt  292 (440)
T KOG0726|consen  215 GIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT  292 (440)
T ss_pred             CCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc
Confidence            666789999999999999999999998765  44777777888776665543       222 44578899999998733


Q ss_pred             CC-C------CccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHHh
Q psy14616         93 GL-G------SKVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus        93 ~~-~------~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~l  161 (174)
                      +. .      .+.|...+. .+.++.+.....+-+  |.++ |+...++|+|+  .|+ ..|.|+.+++...++|++.+.
T Consensus       293 KRyds~SggerEiQrtmLELLNQldGFdsrgDvKv--imAT-nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHT  369 (440)
T KOG0726|consen  293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKV--IMAT-NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHT  369 (440)
T ss_pred             ccccCCCccHHHHHHHHHHHHHhccCccccCCeEE--EEec-ccccccCHhhcCCCccccccccCCCchhhhceeEEEee
Confidence            22 1      111211111 111222233333333  4455 89999999999  678 789999999999998888776


Q ss_pred             chhhhhhhhh
Q psy14616        162 VKNERNEIYN  171 (174)
Q Consensus       162 ~~~~~~~~~~  171 (174)
                      .+..+.+.+|
T Consensus       370 s~Mtl~~dVn  379 (440)
T KOG0726|consen  370 SRMTLAEDVN  379 (440)
T ss_pred             cccchhcccc
Confidence            6655555443

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.49  E-value=4e-13  Score=105.78  Aligned_cols=57  Identities=30%  Similarity=0.535  Sum_probs=42.3

Q ss_pred             CCchHHHHHHHHHHHHH--HHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616          1 MVGQLQARRAAGVVLGM--IKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA   59 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~--~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~   59 (174)
                      ||||+++++++......  .+.+       ..+++++||+||||||||++|+++|+.++.  +|+.++
T Consensus        14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vd   79 (441)
T TIGR00390        14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVE   79 (441)
T ss_pred             ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEee
Confidence            69999999888754432  1211       123589999999999999999999999973  344444

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.49  E-value=1.2e-14  Score=98.29  Aligned_cols=114  Identities=30%  Similarity=0.367  Sum_probs=68.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhhh-hc-cCcEEEEEEeccCCCCC--C
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EETE-MI-EGEVVEIQIERPATGLG--S   96 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~-~~~i~~~~id~~~~~~~--~   96 (174)
                      +||+||||||||++|+.+|+.++  .++..++...+.+...+...       ..+. .. +..++++++|.+.....  .
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~--~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~   78 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG--FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSS   78 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT--SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSS
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc--cccccccccccccccccccccccccccccccccccceeeeeccchhccccccccc
Confidence            68999999999999999999998  66788888776643333332       2222 22 56777788888743320  0


Q ss_pred             ccceeEEE---eccchhhhcc-ccccchhhhcccCCCCCCCHHhh-cce-eeEecC
Q psy14616         97 KVGKLTMK---TTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLL-DRM-VIIPTQ  146 (174)
Q Consensus        97 ~~~~~~~~---~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~-sR~-~~i~~~  146 (174)
                      ........   ...+...... .+..+  ++++ |....++++++ +|| ..++++
T Consensus        79 ~~~~~~~~~~L~~~l~~~~~~~~~~~v--I~tt-n~~~~i~~~l~~~rf~~~i~~~  131 (132)
T PF00004_consen   79 SSFEQRLLNQLLSLLDNPSSKNSRVIV--IATT-NSPDKIDPALLRSRFDRRIEFP  131 (132)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTTSSSEEE--EEEE-SSGGGSCHHHHSTTSEEEEEE-
T ss_pred             ccccccccceeeeccccccccccccee--EEee-CChhhCCHhHHhCCCcEEEEcC
Confidence            00000000   1111111121 22344  5566 77899999999 999 566654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.49  E-value=4.4e-13  Score=105.61  Aligned_cols=57  Identities=32%  Similarity=0.499  Sum_probs=42.0

Q ss_pred             CCchHHHHHHHHHHHHH-HHhcC--------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616          1 MVGQLQARRAAGVVLGM-IKEGK--------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA   59 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~~~g~--------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~   59 (174)
                      |+||+++++++...... ++...        ..++++||+||||||||++|+.+|+.++..  |+.++
T Consensus        17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~--fi~vD   82 (443)
T PRK05201         17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVE   82 (443)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh--heeec
Confidence            69999999888765532 11111        125899999999999999999999998743  44443

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.49  E-value=1.2e-13  Score=109.87  Aligned_cols=89  Identities=26%  Similarity=0.409  Sum_probs=58.4

Q ss_pred             CCchHHHHHHHHHHH----HHHHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hh
Q psy14616          1 MVGQLQARRAAGVVL----GMIKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EM   68 (174)
Q Consensus         1 iiG~~~~~~~l~~~~----~~~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~   68 (174)
                      ||||+++++.+....    ..+..+       ..+..++||+||||||||++|+++|+.++  .+|+.++++.+... ++
T Consensus        73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~--~pf~~id~~~l~~~gyv  150 (412)
T PRK05342         73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD--VPFAIADATTLTEAGYV  150 (412)
T ss_pred             eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC--CCceecchhhcccCCcc
Confidence            699999999886544    222221       11346899999999999999999999997  45666665543321 11


Q ss_pred             hh----hh----h-----hhhhccCcEEEEEEeccC
Q psy14616         69 NK----TE----E-----ETEMIEGEVVEIQIERPA   91 (174)
Q Consensus        69 ~~----~~----~-----~~~~~~~~i~~~~id~~~   91 (174)
                      +.    ..    .     .....++.++++|||++.
T Consensus       151 G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~  186 (412)
T PRK05342        151 GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA  186 (412)
T ss_pred             cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence            11    10    0     112245778889999984

>KOG0743|consensus

Probab=99.49  E-value=2.7e-13  Score=106.42  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhc-----cCcEEEEEEeccCCCCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMI-----EGEVVEIQIERPATGLG   95 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~   95 (174)
                      |+.=.+++|||||||||||+++-|+|..|+.+.....++....-+       +...+.     ...+++.+||..+...+
T Consensus       231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~-------dLr~LL~~t~~kSIivIEDIDcs~~l~~  303 (457)
T KOG0743|consen  231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS-------DLRHLLLATPNKSILLIEDIDCSFDLRE  303 (457)
T ss_pred             CcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH-------HHHHHHHhCCCCcEEEEeeccccccccc
Confidence            555578999999999999999999999998654333333221110       111111     23567778997744321


Q ss_pred             C-------cc---ceeEEE--eccchhhhccc--cccchhhhcccCCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHH
Q psy14616         96 S-------KV---GKLTMK--TTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILK  158 (174)
Q Consensus        96 ~-------~~---~~~~~~--~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~  158 (174)
                      .       ..   ..+.|.  .++++..-.-.  ..++  +.|| |....+||||++  |+ ..|++..=+.+....++.
T Consensus       304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi--vFTT-Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~  380 (457)
T KOG0743|consen  304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII--VFTT-NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLAS  380 (457)
T ss_pred             ccccccccccCCcceeehHHhhhhhccccccCCCceEE--EEec-CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence            0       11   112222  11222222211  2233  4455 899999999997  99 889999999999999999


Q ss_pred             HHhchh
Q psy14616        159 IRLVKN  164 (174)
Q Consensus       159 ~~l~~~  164 (174)
                      +++.-.
T Consensus       381 nYL~~~  386 (457)
T KOG0743|consen  381 NYLGIE  386 (457)
T ss_pred             HhcCCC
Confidence            988553

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.49  E-value=1.4e-13  Score=109.17  Aligned_cols=89  Identities=25%  Similarity=0.375  Sum_probs=56.5

Q ss_pred             CCchHHHHHHHHHHH----HHHHh---cC------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-
Q psy14616          1 MVGQLQARRAAGVVL----GMIKE---GK------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~----~~~~~---g~------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-   66 (174)
                      ||||+++++.+....    ..+..   ..      ....++||+||||||||++|+++|+.++  .+|...++..+... 
T Consensus        79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~--~pf~~~da~~L~~~g  156 (413)
T TIGR00382        79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN--VPFAIADATTLTEAG  156 (413)
T ss_pred             ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC--CCeEEechhhccccc
Confidence            699999998886544    12221   11      1136899999999999999999999997  45665555443211 


Q ss_pred             hhhhhh-----h--------hhhhccCcEEEEEEeccC
Q psy14616         67 EMNKTE-----E--------ETEMIEGEVVEIQIERPA   91 (174)
Q Consensus        67 ~~~~~~-----~--------~~~~~~~~i~~~~id~~~   91 (174)
                      +++...     .        .....++.++++|+|++.
T Consensus       157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~  194 (413)
T TIGR00382       157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS  194 (413)
T ss_pred             cccccHHHHHHHHHHhCcccHHhcccceEEecccchhc
Confidence            222210     0        011134578888999874

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.49  E-value=3e-13  Score=104.56  Aligned_cols=146  Identities=21%  Similarity=0.279  Sum_probs=86.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh--hhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM--NKTEEET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~--~~~~~~~   75 (174)
                      ++|+++++   ..+..+++.+..+  +++|+||||+|||++++++++.+.+.   ..+..++.++....+.  ......+
T Consensus        19 ~~g~~~~~---~~l~~~i~~~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~   93 (319)
T PRK00440         19 IVGQEEIV---ERLKSYVKEKNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFA   93 (319)
T ss_pred             hcCcHHHH---HHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHH
Confidence            57999888   4555555666655  78999999999999999999988432   2334444332211111  0111111


Q ss_pred             hhc------cCcEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         76 EMI------EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        76 ~~~------~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                      ...      ...++++++|.+ ..   ..+..      +....+ . ....+  +.++ +....+.+++.+||.+++|++
T Consensus        94 ~~~~~~~~~~~vviiDe~~~l-~~---~~~~~------L~~~le~~~~~~~l--Il~~-~~~~~l~~~l~sr~~~~~~~~  160 (319)
T PRK00440         94 RTAPVGGAPFKIIFLDEADNL-TS---DAQQA------LRRTMEMYSQNTRF--ILSC-NYSSKIIDPIQSRCAVFRFSP  160 (319)
T ss_pred             hcCCCCCCCceEEEEeCcccC-CH---HHHHH------HHHHHhcCCCCCeE--EEEe-CCccccchhHHHHhheeeeCC
Confidence            111      113444566555 21   11110      011111 1 12223  3344 566778889999999999999


Q ss_pred             CCHHHHHHHHHHHhchh
Q psy14616        148 YQDEEIQAILKIRLVKN  164 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~~  164 (174)
                      ++.+++..+++..+.+.
T Consensus       161 l~~~ei~~~l~~~~~~~  177 (319)
T PRK00440        161 LKKEAVAERLRYIAENE  177 (319)
T ss_pred             CCHHHHHHHHHHHHHHc
Confidence            99999999999877544

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.48  E-value=4.2e-13  Score=111.83  Aligned_cols=157  Identities=22%  Similarity=0.261  Sum_probs=92.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC--------CCCCeeeecccccchh------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG--------PDTPFTSMAGSEIYSL------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~--------~~~~~~~~~~~~~~~~------   66 (174)
                      ++||+.+.+.+   ...+..+.  +.+++|+|||||||||+|+.+++...        ...+|+.+++..+...      
T Consensus       156 iiGqs~~~~~l---~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~  230 (615)
T TIGR02903       156 IVGQERAIKAL---LAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN  230 (615)
T ss_pred             ceeCcHHHHHH---HHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence            57999888654   44444433  35899999999999999999987652        2345777776543100      


Q ss_pred             -hhhhhhhh----------------------hhhccCcEEEEEEeccCCCC-C------CccceeEEEecc---------
Q psy14616         67 -EMNKTEEE----------------------TEMIEGEVVEIQIERPATGL-G------SKVGKLTMKTTE---------  107 (174)
Q Consensus        67 -~~~~~~~~----------------------~~~~~~~i~~~~id~~~~~~-~------~~~~~~~~~~~~---------  107 (174)
                       .++...+.                      .....|.++++|++.+ +.. .      -+.+...+...+         
T Consensus       231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~  309 (615)
T TIGR02903       231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVP  309 (615)
T ss_pred             HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccc
Confidence             00100000                      0111344566677665 221 0      011112221111         


Q ss_pred             --chhhhc-cccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        108 --METSYD-LGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       108 --~~~~~~-~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                        +...++ ..+..+.+++++++.+..++++|+|||..+.|++++.+++.+++++.+.+
T Consensus       310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~  368 (615)
T TIGR02903       310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK  368 (615)
T ss_pred             hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence              000111 12223434666767778899999999999999999999999999997653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.47  E-value=7.4e-14  Score=108.48  Aligned_cols=137  Identities=15%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh---------------------
Q psy14616         10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM---------------------   68 (174)
Q Consensus        10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~---------------------   68 (174)
                      ..+.+...+.+|+.+ |.+||+||+|+||+++|+++|+.+.|..+.....|+.|.++..                     
T Consensus        10 ~~~~l~~~~~~~rl~-HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I   88 (334)
T PRK07993         10 DYEQLVGSYQAGRGH-HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL   88 (334)
T ss_pred             HHHHHHHHHHcCCcc-eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence            346677788889887 8999999999999999999999997753221123333322111                     


Q ss_pred             --hhhhhhh---hhc----cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHh
Q psy14616         69 --NKTEEET---EMI----EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        69 --~~~~~~~---~~~----~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                        .++.+..   ...    ..+ +++...|+| +.   +.+|..++      +.+.  .+++|  |-.+ +.+..+.|++
T Consensus        89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-~~---~AaNaLLK------tLEEPp~~t~f--iL~t-~~~~~lLpTI  155 (334)
T PRK07993         89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALL-TD---AAANALLK------TLEEPPENTWF--FLAC-REPARLLATL  155 (334)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEcchHhh-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChhhChHHH
Confidence              0000000   000    112 222334444 22   12222222      1222  23444  3344 5788999999


Q ss_pred             hcceeeEecCCCCHHHHHHHHHHH
Q psy14616        137 LDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       137 ~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      +|||+.+.|++++.++..++|...
T Consensus       156 rSRCq~~~~~~~~~~~~~~~L~~~  179 (334)
T PRK07993        156 RSRCRLHYLAPPPEQYALTWLSRE  179 (334)
T ss_pred             HhccccccCCCCCHHHHHHHHHHc
Confidence            999999999999999999998764

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=6.1e-13  Score=101.16  Aligned_cols=57  Identities=32%  Similarity=0.540  Sum_probs=45.0

Q ss_pred             CCchHHHHHHHH-HHHHHHHhcCcC--------CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616          1 MVGQLQARRAAG-VVLGMIKEGKIA--------GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA   59 (174)
Q Consensus         1 iiG~~~~~~~l~-~~~~~~~~g~~~--------~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~   59 (174)
                      ||||+++++++. .+.+.++..+.+        |+|+|+.||+|+|||.+||-+|+..+  .||+.+.
T Consensus        17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~--aPFiKVE   82 (444)
T COG1220          17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG--APFIKVE   82 (444)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhC--CCeEEEE
Confidence            699999999876 455555543333        78999999999999999999999988  4565444

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.46  E-value=6.8e-13  Score=100.15  Aligned_cols=147  Identities=21%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc------cchhhhhh----hhh---
Q psy14616          7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE------IYSLEMNK----TEE---   73 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~------~~~~~~~~----~~~---   73 (174)
                      +++.++.+...+..    +.+++|.||||||||++|+++|+.+|..  +..+++..      +++.+.+.    ..+   
T Consensus         7 ~~~l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~lg~~--~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~   80 (262)
T TIGR02640         7 VKRVTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKRDRP--VMLINGDAELTTSDLVGSYAGYTRKKVHDQFI   80 (262)
T ss_pred             HHHHHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHhCCC--EEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence            34444555555554    3589999999999999999999998854  44444322      11111000    000   


Q ss_pred             --------------------hhhhccCcEEEEEEeccCCCCC------CccceeEEEeccc-hhhhccccccchhhhccc
Q psy14616         74 --------------------ETEMIEGEVVEIQIERPATGLG------SKVGKLTMKTTEM-ETSYDLGAKMIEAIGTAY  126 (174)
Q Consensus        74 --------------------~~~~~~~~i~~~~id~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~  126 (174)
                                          .+-...+.++++|+|++.....      -+.+.+....... ....... .-|..|+|+ 
T Consensus        81 ~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~-~~frvIaTs-  158 (262)
T TIGR02640        81 HNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH-PEFRVIFTS-  158 (262)
T ss_pred             HHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC-CCCEEEEee-
Confidence                                0001123566678877621110      0111111111000 0111111 123336676 


Q ss_pred             CCC-----CCCCHHhhcceeeEecCCCCHHHHHHHHHHHh
Q psy14616        127 SSP-----HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       127 ~~~-----~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      |+.     ..+++++.+||..+.++.|+.++..+|++.+.
T Consensus       159 N~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~  198 (262)
T TIGR02640       159 NPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT  198 (262)
T ss_pred             CCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence            554     35689999999999999999999999998763

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK06893 DNA replication initiation factor; Validated

Probab=99.46  E-value=1.8e-13  Score=101.37  Aligned_cols=128  Identities=14%  Similarity=0.181  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhhhhhhhhc-cCcEEEEEEeccCCCCCCcccee
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKTEEETEMI-EGEVVEIQIERPATGLGSKVGKL  101 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~id~~~~~~~~~~~~~  101 (174)
                      ..++|+||||||||++++++|+++   +..+.|...+.......   ..  ..... ...+++++++......  ..+..
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~---~~--~~~~~~~dlLilDDi~~~~~~~--~~~~~  112 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSP---AV--LENLEQQDLVCLDDLQAVIGNE--EWELA  112 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhH---HH--HhhcccCCEEEEeChhhhcCCh--HHHHH
Confidence            367999999999999999999886   33333443332111110   00  01111 1235555665542111  10111


Q ss_pred             EEEeccchhhhccccccchhhhcccCCCCCC---CHHhhccee---eEecCCCCHHHHHHHHHHHhchh
Q psy14616        102 TMKTTEMETSYDLGAKMIEAIGTAYSSPHGI---PIDLLDRMV---IIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l---~~~l~sR~~---~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .+.  .+....+....++  +.|++..+..+   .+.+.||+.   ++++.+|+++++.+++++....+
T Consensus       113 l~~--l~n~~~~~~~~il--lits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~  177 (229)
T PRK06893        113 IFD--LFNRIKEQGKTLL--LISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR  177 (229)
T ss_pred             HHH--HHHHHHHcCCcEE--EEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence            000  0111112122222  34554455443   489999995   89999999999999999876543

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.45  E-value=1.8e-13  Score=101.65  Aligned_cols=126  Identities=20%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhhhhhhhhhhhhc--cCcEEEEEEeccCCCCCCcc-c
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEVVEIQIERPATGLGSKV-G   99 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~id~~~~~~~~~~-~   99 (174)
                      .+++|+||||||||++++++++.+.   ..+.|..++......   .   +..+.+  ...+++++++.+ ++.  +. +
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~---~---~~~~~~~~~dlliiDdi~~~-~~~--~~~~  116 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFV---P---EVLEGMEQLSLVCIDNIECI-AGD--ELWE  116 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhh---H---HHHHHhhhCCEEEEeChhhh-cCC--HHHH
Confidence            5899999999999999999998763   222333332211100   0   001111  123455566554 221  11 0


Q ss_pred             eeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        100 KLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ...|.  ......+..+..+  +.|+.+++..   +.|.|+|||   .++.+.+++.+++.+++++....+
T Consensus       117 ~~lf~--l~n~~~e~g~~~l--i~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~  183 (235)
T PRK08084        117 MAIFD--LYNRILESGRTRL--LITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR  183 (235)
T ss_pred             HHHHH--HHHHHHHcCCCeE--EEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence            00000  0111112122222  4566567655   679999999   899999999999999998855443

>KOG0729|consensus

Probab=99.45  E-value=4.8e-14  Score=104.35  Aligned_cols=136  Identities=19%  Similarity=0.231  Sum_probs=82.7

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-hhhhh-------ccCcEEEEEEe
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-EETEM-------IEGEVVEIQIE   88 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~i~~~~id   88 (174)
                      +++-|.-|++++|+|||||||||.+|+++|+..+  .-|+.+-++.+...++++-. -..++       ..+.++++|||
T Consensus       203 fv~lgidppkgvllygppgtgktl~aravanrtd--acfirvigselvqkyvgegarmvrelf~martkkaciiffdeid  280 (435)
T KOG0729|consen  203 FVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID  280 (435)
T ss_pred             HhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence            3445777789999999999999999999999887  44788888888777776543 11122       24567888998


Q ss_pred             ccC-CCCCC------ccceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHH
Q psy14616         89 RPA-TGLGS------KVGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAIL  157 (174)
Q Consensus        89 ~~~-~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il  157 (174)
                      .+. ..+.+      +.|...+. .+.++.+.-.+|.-+  +.++ |++..++|+|+  .|+ ..++|.-++.+-..+|+
T Consensus       281 aiggarfddg~ggdnevqrtmleli~qldgfdprgnikv--lmat-nrpdtldpallrpgrldrkvef~lpdlegrt~i~  357 (435)
T KOG0729|consen  281 AIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV--LMAT-NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIF  357 (435)
T ss_pred             cccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE--Eeec-CCCCCcCHhhcCCcccccceeccCCcccccceeE
Confidence            772 22222      11211111 011122222233333  3444 89999999998  566 45555555444333333

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.44  E-value=5.1e-13  Score=114.99  Aligned_cols=157  Identities=18%  Similarity=0.276  Sum_probs=96.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcC----CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIA----GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEM-------   68 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~----~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~-------   68 (174)
                      |+||+.+++.+.......+.|...    ...++|+||||||||++|+++|+.+. ...+++.++++.+.....       
T Consensus       570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~  649 (857)
T PRK10865        570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGA  649 (857)
T ss_pred             EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCC
Confidence            589999998888777766655432    24789999999999999999999873 334566666654432110       


Q ss_pred             -----h-----hhhhhhhhcc-CcEEEEEEeccCCCCCCccceeEEE---e----ccchhhhccccccchhhhcccCC--
Q psy14616         69 -----N-----KTEEETEMIE-GEVVEIQIERPATGLGSKVGKLTMK---T----TEMETSYDLGAKMIEAIGTAYSS--  128 (174)
Q Consensus        69 -----~-----~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~i~~~~~~--  128 (174)
                           +     .........| +.+++++++++ +.   ..++..+.   +    .......+..+.++  |+|++-.  
T Consensus       650 ~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-~~---~v~~~Ll~ile~g~l~d~~gr~vd~rn~ii--I~TSN~g~~  723 (857)
T PRK10865        650 PPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-HP---DVFNILLQVLDDGRLTDGQGRTVDFRNTVV--IMTSNLGSD  723 (857)
T ss_pred             CCcccccchhHHHHHHHHhCCCCeEEEeehhhC-CH---HHHHHHHHHHhhCceecCCceEEeecccEE--EEeCCcchH
Confidence                 0     0011112223 45677788876 22   11111000   0    00112233444444  4444210  


Q ss_pred             ----------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 ----------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                            ...+.|+|++|+ .++.|.|++.+++.+|++..+.+
T Consensus       724 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~  781 (857)
T PRK10865        724 LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR  781 (857)
T ss_pred             HHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence                                  123678999999 99999999999999999998755

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.44  E-value=8.6e-13  Score=113.79  Aligned_cols=156  Identities=22%  Similarity=0.256  Sum_probs=98.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEM-------   68 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~-------   68 (174)
                      |+||+.+++.+.........|..    |...++|+||||||||++|+++|+.+.. ..+++.++++.+.....       
T Consensus       567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~  646 (852)
T TIGR03346       567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGA  646 (852)
T ss_pred             cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCC
Confidence            68999999888877766665432    3357999999999999999999998843 34566666654422110       


Q ss_pred             ----------hhhhhhhhhccC-cEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCC
Q psy14616         69 ----------NKTEEETEMIEG-EVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSP  129 (174)
Q Consensus        69 ----------~~~~~~~~~~~~-~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~  129 (174)
                                +.........|. .++++++|++ +.   ..++.        .+.+ ......++.++++  |+|++-..
T Consensus       647 ~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-~~---~v~~~Ll~~l~~g~l~d-~~g~~vd~rn~ii--I~TSn~g~  719 (852)
T TIGR03346       647 PPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-HP---DVFNVLLQVLDDGRLTD-GQGRTVDFRNTVI--IMTSNLGS  719 (852)
T ss_pred             CCCccCcccccHHHHHHHcCCCcEEEEeccccC-CH---HHHHHHHHHHhcCceec-CCCeEEecCCcEE--EEeCCcch
Confidence                      011111122233 4677788877 32   12221        1111 1123344555555  55553211


Q ss_pred             ------------------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        130 ------------------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 ------------------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                              ..+.|.|+.|+ .++.|.|++.+++.+|+...+..
T Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~  778 (852)
T TIGR03346       720 QFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR  778 (852)
T ss_pred             HhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence                                    12568899999 89999999999999999987753

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.44  E-value=2.6e-13  Score=105.05  Aligned_cols=143  Identities=23%  Similarity=0.270  Sum_probs=81.5

Q ss_pred             CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC----------------------Ceee
Q psy14616          1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT----------------------PFTS   57 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~----------------------~~~~   57 (174)
                      ++|++.+.   ..+..++. .++.+ +.+||+||||+|||++|.++|+.+.+..                      .+..
T Consensus         3 ~~~~~~~~---~~l~~~~~~~~~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~le   78 (325)
T COG0470           3 LVPWQEAV---KRLLVQALESGRLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLE   78 (325)
T ss_pred             cccchhHH---HHHHHHHHhcCCCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEE
Confidence            46777777   34444444 45444 5599999999999999999999997543                      3445


Q ss_pred             ecccccchhh--hhhhhhhh---hhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC
Q psy14616         58 MAGSEIYSLE--MNKTEEET---EMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS  127 (174)
Q Consensus        58 ~~~~~~~~~~--~~~~~~~~---~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  127 (174)
                      +++++....+  ...+.+..   ...+  +   .+++++.|.+..    ..++...+...    ..-.++.|  +.++ |
T Consensus        79 l~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----~A~nallk~lE----ep~~~~~~--il~~-n  147 (325)
T COG0470          79 LNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----DAANALLKTLE----EPPKNTRF--ILIT-N  147 (325)
T ss_pred             ecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----HHHHHHHHHhc----cCCCCeEE--EEEc-C
Confidence            5555443321  11122111   1122  1   344557776622    12222111110    01123334  4455 6


Q ss_pred             CCCCCCHHhhcceeeEecCCCCHHHHHHHHH
Q psy14616        128 SPHGIPIDLLDRMVIIPTQPYQDEEIQAILK  158 (174)
Q Consensus       128 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~  158 (174)
                      .+..+.++++|||++++|.+++..+....++
T Consensus       148 ~~~~il~tI~SRc~~i~f~~~~~~~~i~~~e  178 (325)
T COG0470         148 DPSKILPTIRSRCQRIRFKPPSRLEAIAWLE  178 (325)
T ss_pred             ChhhccchhhhcceeeecCCchHHHHHHHhh
Confidence            8899999999999999999865444443333

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.43  E-value=1.9e-13  Score=105.25  Aligned_cols=133  Identities=14%  Similarity=0.216  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh-----------------------
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE-----------------------   67 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----------------------   67 (174)
                      ...+...+++|+.+ |.+||+||+|+||+++|+++|+.+.|..+..   ++.+.++.                       
T Consensus        13 ~~~l~~~~~~~rl~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~---~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k   88 (319)
T PRK08769         13 YDQTVAALDAGRLG-HGLLICGPEGLGKRAVALALAEHVLASGPDP---AAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK   88 (319)
T ss_pred             HHHHHHHHHcCCcc-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCC---CCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence            36677778889887 8899999999999999999999997653211   11110000                       


Q ss_pred             ------hhhhhhhh---hhcc----Cc-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCC
Q psy14616         68 ------MNKTEEET---EMIE----GE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHG  131 (174)
Q Consensus        68 ------~~~~~~~~---~~~~----~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~  131 (174)
                            +.++.+..   ...+    .+ +++++.|++ +.   +.+|..      ..+.+.+  ++.|  |..+ +.+..
T Consensus        89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-~~---~AaNaL------LKtLEEPp~~~~f--iL~~-~~~~~  155 (319)
T PRK08769         89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-NR---AACNAL------LKTLEEPSPGRYL--WLIS-AQPAR  155 (319)
T ss_pred             ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-CH---HHHHHH------HHHhhCCCCCCeE--EEEE-CChhh
Confidence                  00000000   0000    12 222344444 21   112222      2222222  3344  4444 57888


Q ss_pred             CCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        132 IPIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       132 l~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      +.|+++|||+.+.|.+++.++..++|...
T Consensus       156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~  184 (319)
T PRK08769        156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ  184 (319)
T ss_pred             CchHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence            99999999999999999999999999864

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.43  E-value=6.3e-13  Score=114.46  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccc--hhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIY--SLEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~--~~~~~~   70 (174)
                      +||+++.+   .++...+....  ..+++|+||||||||++++++|+.+..        ...++.++.+.+.  ..+.+.
T Consensus       180 vigr~~ei---~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~  254 (857)
T PRK10865        180 VIGRDEEI---RRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE  254 (857)
T ss_pred             CCCCHHHH---HHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhh
Confidence            68988765   44443333333  359999999999999999999998832        1233444433332  112222


Q ss_pred             hh-------hhhhh--ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhh
Q psy14616         71 TE-------EETEM--IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLL  137 (174)
Q Consensus        71 ~~-------~~~~~--~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~  137 (174)
                      .+       +....  .+..++++|+|.+... +...+.... ...+......+.  +.+|++|+..+    ..+++++.
T Consensus       255 ~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~-~~~~~~~d~-~~~lkp~l~~g~--l~~IgaTt~~e~r~~~~~d~al~  330 (857)
T PRK10865        255 FEERLKGVLNDLAKQEGNVILFIDELHTMVGA-GKADGAMDA-GNMLKPALARGE--LHCVGATTLDEYRQYIEKDAALE  330 (857)
T ss_pred             hHHHHHHHHHHHHHcCCCeEEEEecHHHhccC-CCCccchhH-HHHhcchhhcCC--CeEEEcCCCHHHHHHhhhcHHHH
Confidence            22       11111  1224566677776322 111111100 000111112222  22367765554    35899999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      +||+.|.+..|+.++...+++...
T Consensus       331 rRf~~i~v~eP~~~~~~~iL~~l~  354 (857)
T PRK10865        331 RRFQKVFVAEPSVEDTIAILRGLK  354 (857)
T ss_pred             hhCCEEEeCCCCHHHHHHHHHHHh
Confidence            999889999999999999997643

>KOG0732|consensus

Probab=99.42  E-value=4.8e-13  Score=114.31  Aligned_cols=160  Identities=21%  Similarity=0.182  Sum_probs=108.7

Q ss_pred             chHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhh
Q psy14616          3 GQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKT   71 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~   71 (174)
                      |.++++..+.......        .-+..|++++||+||||||||..|+++|..+   +.+..|..-.+.++.++++++.
T Consensus       269 gl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEa  348 (1080)
T KOG0732|consen  269 GLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEA  348 (1080)
T ss_pred             cHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcH
Confidence            5677776555433211        1244567999999999999999999999887   3345566667788999999988


Q ss_pred             hhhh--------hhccCcEEEEEEeccCCCCCC--ccceeEEEe---ccchhhhccccccchhhhcccCCCCCCCHHhh-
Q psy14616         72 EEET--------EMIEGEVVEIQIERPATGLGS--KVGKLTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL-  137 (174)
Q Consensus        72 ~~~~--------~~~~~~i~~~~id~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~-  137 (174)
                      +...        ...|..+++++||.+......  ++-......   .-+......+.+++  |+++ |++..++|+++ 
T Consensus       349 ERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvv--igAT-nRpda~dpaLRR  425 (1080)
T KOG0732|consen  349 ERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVV--IGAT-NRPDAIDPALRR  425 (1080)
T ss_pred             HHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEE--Eccc-CCccccchhhcC
Confidence            7332        223667888899976222111  111112222   22344444455555  6666 99999999996 


Q ss_pred             -cce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        138 -DRM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       138 -sR~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                       .|| ..++|+-++.+...+|+..+-.+..
T Consensus       426 Pgrfdref~f~lp~~~ar~~Il~Ihtrkw~  455 (1080)
T KOG0732|consen  426 PGRFDREFYFPLPDVDARAKILDIHTRKWE  455 (1080)
T ss_pred             CcccceeEeeeCCchHHHHHHHHHhccCCC
Confidence             778 8899999999999999988765543

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.41  E-value=5.3e-13  Score=103.68  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=33.2

Q ss_pred             hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      |.++ +++..++|+++|||+.+.|++++.+++.++|...
T Consensus       166 iL~t-~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~  203 (342)
T PRK06964        166 LLVS-ARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ  203 (342)
T ss_pred             EEEE-CChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence            4444 5789999999999999999999999999999874

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.41  E-value=4.7e-13  Score=103.05  Aligned_cols=135  Identities=14%  Similarity=0.063  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh---hhhhhcc--------
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE---EETEMIE--------   79 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------   79 (174)
                      -+.+...+++++.+ |.+||+||.|+||+++|+.+|+.+.|..+- ...++.|.++..-...   |...+.|        
T Consensus        12 ~~~l~~~~~~~rl~-hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~   89 (319)
T PRK06090         12 WQNWKAGLDAGRIP-GALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT   89 (319)
T ss_pred             HHHHHHHHHcCCcc-eeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence            35677777888887 899999999999999999999999765321 1223333221110000   0000000        


Q ss_pred             -------------------Cc-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhh
Q psy14616         80 -------------------GE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        80 -------------------~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                                         .+ +++...|++ +.   ..+|..++      +.+.+  ++.|  |-.+ +.+..+.|+++
T Consensus        90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-~~---~AaNaLLK------tLEEPp~~t~f--iL~t-~~~~~lLpTI~  156 (319)
T PRK06090         90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAM-NE---SASNALLK------TLEEPAPNCLF--LLVT-HNQKRLLPTIV  156 (319)
T ss_pred             HHHHHHHHHHHhhCcccCCceEEEecchhhh-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChhhChHHHH
Confidence                               11 222233333 21   11222111      22222  2334  3344 57889999999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHH
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      |||+.+.|++++.+++.++|...
T Consensus       157 SRCq~~~~~~~~~~~~~~~L~~~  179 (319)
T PRK06090        157 SRCQQWVVTPPSTAQAMQWLKGQ  179 (319)
T ss_pred             hcceeEeCCCCCHHHHHHHHHHc
Confidence            99999999999999999998764

>KOG0651|consensus

Probab=99.38  E-value=9.4e-14  Score=104.37  Aligned_cols=127  Identities=21%  Similarity=0.304  Sum_probs=83.2

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--------hhhhhccCcEEEEEEeccCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--------EETEMIEGEVVEIQIERPAT   92 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~id~~~~   92 (174)
                      |..+|..++||||||+|||.+|+++|..+|.+  |+.+.++.+.+.+.++..        ...+..++.++.++||....
T Consensus       162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigG  239 (388)
T KOG0651|consen  162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVN--FLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGG  239 (388)
T ss_pred             CCCCCceeEEeCCCCCchhHHHHHHHHhcCCc--eEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhcc
Confidence            55567899999999999999999999999954  888888888888877765        12244577888889987632


Q ss_pred             CC---CCc----cceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHH
Q psy14616         93 GL---GSK----VGKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEE  152 (174)
Q Consensus        93 ~~---~~~----~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e  152 (174)
                      ..   ++.    .+...+. ...+.....+..+-+  |+|+ |+++.++|+|+  .|+ ..|+.+-+++..
T Consensus       240 Rr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~--Imat-NrpdtLdpaLlRpGRldrk~~iPlpne~~  307 (388)
T KOG0651|consen  240 RRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT--IMAT-NRPDTLDPALLRPGRLDRKVEIPLPNEQA  307 (388)
T ss_pred             EEeccccchhHHHHHHHHHHHHhhccchhcccccE--EEec-CCccccchhhcCCccccceeccCCcchhh
Confidence            22   000    0100000 112334444445545  6676 99999999998  455 344444444433

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.38  E-value=1.4e-12  Score=112.09  Aligned_cols=152  Identities=20%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      ++|.+..++.+..++   ..  ....+++|+||||||||++|+.+|+.+..        ...++.++.+.+..  .+.++
T Consensus       181 ~igr~~ei~~~~~~L---~r--~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge  255 (821)
T CHL00095        181 VIGREKEIERVIQIL---GR--RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE  255 (821)
T ss_pred             CCCcHHHHHHHHHHH---cc--cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence            578777775544443   22  23469999999999999999999998731        13455666554431  22333


Q ss_pred             hh-------hhhhhc-cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhc
Q psy14616         71 TE-------EETEMI-EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLD  138 (174)
Q Consensus        71 ~~-------~~~~~~-~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~s  138 (174)
                      .+       +...-. +..++++|+|.++.... ..+.... ...+......+.  +.+|++|+...    ...++++.+
T Consensus       256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~-~~g~~~~-a~lLkp~l~rg~--l~~IgaTt~~ey~~~ie~D~aL~r  331 (821)
T CHL00095        256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGA-AEGAIDA-ANILKPALARGE--LQCIGATTLDEYRKHIEKDPALER  331 (821)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC-CCCcccH-HHHhHHHHhCCC--cEEEEeCCHHHHHHHHhcCHHHHh
Confidence            32       111111 22355667776643221 1111110 011111111222  22366665443    347899999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHh
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      ||+.+.+..++.++...|++...
T Consensus       332 Rf~~I~v~ep~~~e~~aILr~l~  354 (821)
T CHL00095        332 RFQPVYVGEPSVEETIEILFGLR  354 (821)
T ss_pred             cceEEecCCCCHHHHHHHHHHHH
Confidence            99999999999999998888743

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.37  E-value=1.1e-12  Score=111.07  Aligned_cols=154  Identities=20%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCCCC-------eeeecccccc--hhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPDTP-------FTSMAGSEIY--SLEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~~~-------~~~~~~~~~~--~~~~~~   70 (174)
                      ++|.+...+.+...   +...  ...+++|+||||||||++|+++|+.+ ...++       +..++.+.+.  ..+.+.
T Consensus       188 liGR~~ei~~~i~i---L~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge  262 (758)
T PRK11034        188 LIGREKELERAIQV---LCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD  262 (758)
T ss_pred             CcCCCHHHHHHHHH---Hhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh
Confidence            46666555333332   2222  23689999999999999999999875 21122       2222222221  111222


Q ss_pred             hh-------hhh-hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhc
Q psy14616         71 TE-------EET-EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLD  138 (174)
Q Consensus        71 ~~-------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~s  138 (174)
                      .+       +.. ...++.++++|+|.++.......+...+ .+.+......+...+  |++++...    ...+++|.+
T Consensus       263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~-~nlLkp~L~~g~i~v--IgATt~~E~~~~~~~D~AL~r  339 (758)
T PRK11034        263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA-ANLIKPLLSSGKIRV--IGSTTYQEFSNIFEKDRALAR  339 (758)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHH-HHHHHHHHhCCCeEE--EecCChHHHHHHhhccHHHHh
Confidence            22       111 1124566677888774332111111111 011122222333333  66664332    357999999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ||+.|.+++|+.++..+||+....
T Consensus       340 RFq~I~v~ePs~~~~~~IL~~~~~  363 (758)
T PRK11034        340 RFQKIDITEPSIEETVQIINGLKP  363 (758)
T ss_pred             hCcEEEeCCCCHHHHHHHHHHHHH
Confidence            999999999999999999997543

>KOG0741|consensus

Probab=99.37  E-value=1e-13  Score=110.64  Aligned_cols=135  Identities=27%  Similarity=0.363  Sum_probs=91.7

Q ss_pred             cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-hhc-------------c--CcEEEEE
Q psy14616         23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-EMI-------------E--GEVVEIQ   86 (174)
Q Consensus        23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~--~~i~~~~   86 (174)
                      .+.+++|||||||||||.+||.+...||..-| .-+++-.+.++++++++... .++             +  -.|+++|
T Consensus       254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP-KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDE  332 (744)
T KOG0741|consen  254 KHVKGILLYGPPGTGKTLIARQIGKMLNAREP-KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDE  332 (744)
T ss_pred             cceeeEEEECCCCCChhHHHHHHHHHhcCCCC-cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehh
Confidence            33569999999999999999999999987644 34677788899999987221 111             1  1688889


Q ss_pred             EeccCCCCCCccce-------eEEEeccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHH
Q psy14616         87 IERPATGLGSKVGK-------LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAI  156 (174)
Q Consensus        87 id~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~i  156 (174)
                      ||.+....+...+.       ..=....++....+.|.++  |+.| |+..-++++|+  .|+ ..+++.-|++.-..+|
T Consensus       333 iDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILV--IGMT-NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQI  409 (744)
T KOG0741|consen  333 IDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILV--IGMT-NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQI  409 (744)
T ss_pred             hHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEE--Eecc-CchhhHHHHhcCCCceEEEEEEeCCCccCceEE
Confidence            99773222211110       0001123455556667776  7777 89999999999  688 4567776777767777


Q ss_pred             HHHHh
Q psy14616        157 LKIRL  161 (174)
Q Consensus       157 l~~~l  161 (174)
                      ++.+.
T Consensus       410 l~IHT  414 (744)
T KOG0741|consen  410 LKIHT  414 (744)
T ss_pred             EEhhh
Confidence            66654

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=3.5e-12  Score=96.36  Aligned_cols=89  Identities=25%  Similarity=0.382  Sum_probs=58.9

Q ss_pred             CCchHHHHHHHHHHH----HHHHhc-C-----cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-----ccch
Q psy14616          1 MVGQLQARRAAGVVL----GMIKEG-K-----IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-----EIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~----~~~~~g-~-----~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-----~~~~   65 (174)
                      ||||+.+|+.|....    ..+... .     +...|+||.||+|+|||.||+-||+.|+  +||....+.     .+.+
T Consensus        63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEAGYVG  140 (408)
T COG1219          63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEAGYVG  140 (408)
T ss_pred             eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhccccc
Confidence            689999998866421    222211 1     1246999999999999999999999998  667544433     3333


Q ss_pred             hhhhhhh---------hhhhhccCcEEEEEEeccC
Q psy14616         66 LEMNKTE---------EETEMIEGEVVEIQIERPA   91 (174)
Q Consensus        66 ~~~~~~~---------~~~~~~~~~i~~~~id~~~   91 (174)
                      -++..+-         |....-.|.++++|||++.
T Consensus       141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIa  175 (408)
T COG1219         141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIA  175 (408)
T ss_pred             hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence            2222211         2223347899999999983

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.34  E-value=1.8e-11  Score=95.27  Aligned_cols=144  Identities=28%  Similarity=0.362  Sum_probs=77.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc-cchhhhhhhhhh-----
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE-IYSLEMNKTEEE-----   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-----   74 (174)
                      ++|+++++..+....       ..+.+++|.||||||||++|+.+|+.++.+  |..+.+.. +...+.-.....     
T Consensus        26 ~~g~~~~~~~~l~a~-------~~~~~vll~G~PG~gKT~la~~lA~~l~~~--~~~i~~t~~l~p~d~~G~~~~~~~~~   96 (329)
T COG0714          26 VVGDEEVIELALLAL-------LAGGHVLLEGPPGVGKTLLARALARALGLP--FVRIQCTPDLLPSDLLGTYAYAALLL   96 (329)
T ss_pred             eeccHHHHHHHHHHH-------HcCCCEEEECCCCccHHHHHHHHHHHhCCC--eEEEecCCCCCHHHhcCchhHhhhhc
Confidence            356666664332222       235799999999999999999999999955  54444331 111111111110     


Q ss_pred             ----hhhcc-----C---cEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccC-----CC
Q psy14616         75 ----TEMIE-----G---EVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYS-----SP  129 (174)
Q Consensus        75 ----~~~~~-----~---~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~  129 (174)
                          ....+     .   .++++||++....    .++.        .+....... +.++...+ .++|. |     ..
T Consensus        97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~----~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~-viaT~-Np~e~~g~  169 (329)
T COG0714          97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPE----VQNALLEALEERQVTVPGLTT-IRLPPPFI-VIATQ-NPGEYEGT  169 (329)
T ss_pred             cCCeEEEecCCcccccceEEEEeccccCCHH----HHHHHHHHHhCcEEEECCcCC-cCCCCCCE-EEEcc-CccccCCC
Confidence                11112     2   4455677666222    2221        111111111 33444333 14454 6     44


Q ss_pred             CCCCHHhhcce-eeEecCCCC-HHHHHHHHHHH
Q psy14616        130 HGIPIDLLDRM-VIIPTQPYQ-DEEIQAILKIR  160 (174)
Q Consensus       130 ~~l~~~l~sR~-~~i~~~~~~-~~e~~~il~~~  160 (174)
                      +.+++++++|| ..++++.+. .++...++.+.
T Consensus       170 ~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~  202 (329)
T COG0714         170 YPLPEALLDRFLLRIYVDYPDSEEEERIILARV  202 (329)
T ss_pred             cCCCHHHHhhEEEEEecCCCCchHHHHHHHHhC
Confidence            67899999999 778888774 44444444443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.33  E-value=2.3e-12  Score=111.21  Aligned_cols=152  Identities=17%  Similarity=0.170  Sum_probs=85.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccc--hhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIY--SLEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~--~~~~~~   70 (174)
                      +||+++.++.   +...+....  ..+++|+||||||||++++++|+.+..        ...+..++.+.+.  ..+.+.
T Consensus       175 ~igr~~ei~~---~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~  249 (852)
T TIGR03346       175 VIGRDEEIRR---TIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE  249 (852)
T ss_pred             CCCcHHHHHH---HHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhh
Confidence            5898887644   443333332  359999999999999999999998732        1223333333322  112222


Q ss_pred             hh-------hhhhh--ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhh
Q psy14616         71 TE-------EETEM--IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLL  137 (174)
Q Consensus        71 ~~-------~~~~~--~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~  137 (174)
                      .+       +....  .+..++++|+|.+.... ...+..... ..+......+..  .+|++++..+    ..+++++.
T Consensus       250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g-~~~~~~d~~-~~Lk~~l~~g~i--~~IgaTt~~e~r~~~~~d~al~  325 (852)
T TIGR03346       250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAG-KAEGAMDAG-NMLKPALARGEL--HCIGATTLDEYRKYIEKDAALE  325 (852)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCC-CCcchhHHH-HHhchhhhcCce--EEEEeCcHHHHHHHhhcCHHHH
Confidence            22       11111  12345666777764211 111110000 001111122222  2366665444    35799999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      +||+.+.+..|+.++...|++...
T Consensus       326 rRf~~i~v~~p~~~~~~~iL~~~~  349 (852)
T TIGR03346       326 RRFQPVFVDEPTVEDTISILRGLK  349 (852)
T ss_pred             hcCCEEEeCCCCHHHHHHHHHHHH
Confidence            999999999999999999998753

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.33  E-value=8.7e-12  Score=98.23  Aligned_cols=155  Identities=19%  Similarity=0.206  Sum_probs=86.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-------CCeeeecccccchh------h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-------TPFTSMAGSEIYSL------E   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-------~~~~~~~~~~~~~~------~   67 (174)
                      ++|.+.-.+.|..+......+.. +.+++++||||||||++++.+++.+...       ..++.+++....+.      -
T Consensus        17 l~gRe~e~~~l~~~l~~~~~~~~-~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i   95 (365)
T TIGR02928        17 IVHRDEQIEELAKALRPILRGSR-PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL   95 (365)
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence            57888777666665544333433 3689999999999999999999876311       33455555332210      0


Q ss_pred             hhhh--------------h----hhhh-hc-cC---cEEEEEEeccCCCCCCcccee-EEEeccchhhhccccccchhhh
Q psy14616         68 MNKT--------------E----EETE-MI-EG---EVVEIQIERPATGLGSKVGKL-TMKTTEMETSYDLGAKMIEAIG  123 (174)
Q Consensus        68 ~~~~--------------~----~~~~-~~-~~---~i~~~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~  123 (174)
                      ..+.              .    ...+ +. .+   .++++|+|.+. +.  ....+ .+............+..+  ++
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~-~~--~~~~L~~l~~~~~~~~~~~~~v~l--I~  170 (365)
T TIGR02928        96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV-GD--DDDLLYQLSRARSNGDLDNAKVGV--IG  170 (365)
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhc-cC--CcHHHHhHhccccccCCCCCeEEE--EE
Confidence            0000              0    0000 10 12   34566777664 21  11111 000000000011123333  44


Q ss_pred             cccCCC---CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616        124 TAYSSP---HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       124 ~~~~~~---~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      .+ |.+   ..+++.+.+||  ..+.|++|+.+++.++++.++.
T Consensus       171 i~-n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       171 IS-NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             EE-CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence            44 333   35889999999  5799999999999999999874

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>KOG0730|consensus

Probab=99.32  E-value=1.2e-12  Score=106.73  Aligned_cols=142  Identities=18%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-------hhhhc--cCcEEEEEEecc
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-------ETEMI--EGEVVEIQIERP   90 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--~~~i~~~~id~~   90 (174)
                      .|..+++++|+|||||||||.+++++|++.+  ..+..+++..+++...++.+.       .+...  |..++++|||.+
T Consensus       213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~--a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l  290 (693)
T KOG0730|consen  213 IGIKPPRGLLLYGPPGTGKTFLVRAVANEYG--AFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDAL  290 (693)
T ss_pred             cCCCCCCCccccCCCCCChHHHHHHHHHHhC--ceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhh
Confidence            3566689999999999999999999999998  557788888888888877762       23222  556677788887


Q ss_pred             CCCCCCccc-eeEEEec---cchhhhccccccchhhhcccCCCCCCCHHhhc-ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616         91 ATGLGSKVG-KLTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus        91 ~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ..+...... .......   .++.....++.++  ++++ |++..+++++++ || ..+.+.-|+..+..+|++....+.
T Consensus       291 ~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~viv--l~at-nrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~  367 (693)
T KOG0730|consen  291 CPKREGADDVESRVVSQLLTLLDGLKPDAKVIV--LAAT-NRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM  367 (693)
T ss_pred             CCcccccchHHHHHHHHHHHHHhhCcCcCcEEE--EEec-CCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc
Confidence            544311111 0000111   1112222234444  5565 899999999996 99 788888899999999999876554


Q ss_pred             hh
Q psy14616        165 ER  166 (174)
Q Consensus       165 ~~  166 (174)
                      ..
T Consensus       368 ~~  369 (693)
T KOG0730|consen  368 NL  369 (693)
T ss_pred             CC
Confidence            43

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.32  E-value=1.5e-11  Score=94.54  Aligned_cols=133  Identities=17%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--hhhhh----hhh---hhh---------ccC-cEE
Q psy14616         23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--EMNKT----EEE---TEM---------IEG-EVV   83 (174)
Q Consensus        23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~----~~~---~~~---------~~~-~i~   83 (174)
                      ..+++++|.||||||||++++.+|+.++..  +..++.......  .+|..    .+.   .+.         ..+ .++
T Consensus        62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~--~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ill  139 (327)
T TIGR01650        62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWP--CVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALC  139 (327)
T ss_pred             hcCCcEEEEeCCCChHHHHHHHHHHHHCCC--eEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEE
Confidence            345799999999999999999999999965  444443222111  12211    010   111         223 366


Q ss_pred             EEEEeccCCCCC-------CccceeEEEeccchhhhccccccchhhhcccCCC------------CCCCHHhhccee-eE
Q psy14616         84 EIQIERPATGLG-------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP------------HGIPIDLLDRMV-II  143 (174)
Q Consensus        84 ~~~id~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~l~~~l~sR~~-~i  143 (174)
                      ++|+|++-....       +..+.+.+.+.  ...+. ++..|..|||. |+.            ..+++++++||. ++
T Consensus       140 lDEin~a~p~~~~~L~~lLE~~~~l~i~~~--~~~i~-~hp~FrviAT~-Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~  215 (327)
T TIGR01650       140 FDEYDAGRPDVMFVIQRVLEAGGKLTLLDQ--NRVIR-AHPAFRLFATA-NTIGLGDTTGLYHGTQQINQAQMDRWSIVT  215 (327)
T ss_pred             echhhccCHHHHHHHHHHhccCCeEEECCC--ceEec-CCCCeEEEEee-CCCCcCCCCcceeeeecCCHHHHhheeeEe
Confidence            778887622210       00112222111  11111 22234446776 663            337999999995 56


Q ss_pred             ecCCCCHHHHHHHHHHHh
Q psy14616        144 PTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       144 ~~~~~~~~e~~~il~~~l  161 (174)
                      .+..++.++-.+|+....
T Consensus       216 ~~~Yp~~e~E~~Il~~~~  233 (327)
T TIGR01650       216 TLNYLEHDNEAAIVLAKA  233 (327)
T ss_pred             eCCCCCHHHHHHHHHhhc
Confidence            899999888888887653

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK08727 hypothetical protein; Validated

Probab=99.31  E-value=1.6e-11  Score=91.21  Aligned_cols=127  Identities=21%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhc--cCcEEEEEEeccCCCCCCccceeE
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMI--EGEVVEIQIERPATGLGSKVGKLT  102 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~  102 (174)
                      ..++|+||+|||||+++.+++..+... .....++......    ...+.-+.+  ...++++++|.+....  ..+...
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----~~~~~~~~l~~~dlLiIDDi~~l~~~~--~~~~~l  115 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----RLRDALEALEGRSLVALDGLESIAGQR--EDEVAL  115 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----hHHHHHHHHhcCCEEEEeCcccccCCh--HHHHHH
Confidence            579999999999999999998876321 1122333222111    001111111  1345666776652221  111111


Q ss_pred             EEeccchhhhccccccchhhhcccCCCCC---CCHHhhcc---eeeEecCCCCHHHHHHHHHHHhch
Q psy14616        103 MKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDR---MVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR---~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      |.  ......+.... +  +.|+...+..   +++.++||   +.++.+++|+.+++.++++++...
T Consensus       116 f~--l~n~~~~~~~~-v--I~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~  177 (233)
T PRK08727        116 FD--FHNRARAAGIT-L--LYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR  177 (233)
T ss_pred             HH--HHHHHHHcCCe-E--EEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence            11  11111111211 2  4566456654   47999999   578999999999999999986544

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.31  E-value=2.7e-11  Score=93.99  Aligned_cols=45  Identities=33%  Similarity=0.460  Sum_probs=35.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      |+||+++++++....  +..|   .+|+||.||||||||++|+++|..+.
T Consensus        10 i~Gq~~~~~~l~~~~--~~~~---~~~vLl~G~pG~gKT~lar~la~llP   54 (334)
T PRK13407         10 IVGQEEMKQAMVLTA--IDPG---IGGVLVFGDRGTGKSTAVRALAALLP   54 (334)
T ss_pred             hCCHHHHHHHHHHHH--hccC---CCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence            689999997665422  2222   26999999999999999999999984

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.30  E-value=2e-11  Score=103.24  Aligned_cols=157  Identities=17%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-------CC-CCeeeecccccchhh-----
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-------PD-TPFTSMAGSEIYSLE-----   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-------~~-~~~~~~~~~~~~~~~-----   67 (174)
                      +.|.|+=++.|..++.-.-.|..++..++++|+||||||++++.+.+.|-       .. +.++.++|..+...+     
T Consensus       757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv  836 (1164)
T PTZ00112        757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV  836 (1164)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence            35666666666655544333444434456999999999999999987761       11 345667763322111     


Q ss_pred             -hhhhh-----------hh-hhhc---------cCcEEEEEEeccCCCCCCccceeEEE-eccchhhhccccccchhhhc
Q psy14616         68 -MNKTE-----------EE-TEMI---------EGEVVEIQIERPATGLGSKVGKLTMK-TTEMETSYDLGAKMIEAIGT  124 (174)
Q Consensus        68 -~~~~~-----------~~-~~~~---------~~~i~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~  124 (174)
                       ..++.           .. ..++         ...|+++|+|.+....    +.+.+. ..+  ....-....+..++.
T Consensus       837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~--~~~s~SKLiLIGISN  910 (1164)
T PTZ00112        837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDW--PTKINSKLVLIAISN  910 (1164)
T ss_pred             HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHH--hhccCCeEEEEEecC
Confidence             00000           00 0111         1135666777663321    111110 000  000112233322232


Q ss_pred             ccCCCCCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhch
Q psy14616        125 AYSSPHGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       125 ~~~~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +.+.+..+++.+.|||  ..+.|+||+.+++.+||+.++..
T Consensus       911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~  951 (1164)
T PTZ00112        911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN  951 (1164)
T ss_pred             chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence            2334567889999999  45899999999999999998753

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.26  E-value=3.3e-11  Score=95.92  Aligned_cols=155  Identities=18%  Similarity=0.132  Sum_probs=83.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhh------hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLE------MNKT   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~------~~~~   71 (174)
                      ++|.++-.+.+..+..-.-.+.. +.+++++||||||||++++.+++.+..   ...++.+++....+..      ..++
T Consensus        32 l~~Re~e~~~l~~~l~~~~~~~~-~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l  110 (394)
T PRK00411         32 LPHREEQIEELAFALRPALRGSR-PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL  110 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence            46777777666555533322332 358999999999999999999987732   2445666654321100      0000


Q ss_pred             ------------h---hh-hhh--ccC---cEEEEEEeccCCCCCCcccee-EEEeccchhhhccccccchhhhcc--cC
Q psy14616         72 ------------E---EE-TEM--IEG---EVVEIQIERPATGLGSKVGKL-TMKTTEMETSYDLGAKMIEAIGTA--YS  127 (174)
Q Consensus        72 ------------~---~~-~~~--~~~---~i~~~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~--~~  127 (174)
                                  .   +. .+.  ..+   .++++|+|.+....  ....+ .+.. .... ....+..+  |+.+  .+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--~~~~l~~l~~-~~~~-~~~~~v~v--I~i~~~~~  184 (394)
T PRK00411        111 FGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--GNDVLYSLLR-AHEE-YPGARIGV--IGISSDLT  184 (394)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--CchHHHHHHH-hhhc-cCCCeEEE--EEEECCcc
Confidence                        0   00 000  122   24455666653111  11111 0000 0000 01112333  3333  22


Q ss_pred             CCCCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616        128 SPHGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       128 ~~~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ....+++.+.+|+  ..+.|++|+.+++.++++.++.
T Consensus       185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~  221 (394)
T PRK00411        185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE  221 (394)
T ss_pred             hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence            2245788899998  6789999999999999998874

>PRK06620 hypothetical protein; Validated

Probab=99.25  E-value=3e-11  Score=88.56  Aligned_cols=115  Identities=15%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccCcEEEEEEeccCCCCCCccceeEEEe
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKT  105 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~  105 (174)
                      +.++||||||+|||++++++++..+.  .+  .+.... .       +........++++++|.. .      +...|  
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~--~~~~~~-~-------~~~~~~~d~lliDdi~~~-~------~~~lf--  103 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA--YI--IKDIFF-N-------EEILEKYNAFIIEDIENW-Q------EPALL--  103 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC--EE--cchhhh-c-------hhHHhcCCEEEEeccccc-h------HHHHH--
Confidence            57999999999999999999987652  11  111110 0       000001123444555532 1      00000  


Q ss_pred             ccchhhhccccccchhhhcccCCC-CCCCHHhhccee---eEecCCCCHHHHHHHHHHHhchh
Q psy14616        106 TEMETSYDLGAKMIEAIGTAYSSP-HGIPIDLLDRMV---IIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~l~sR~~---~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .-.....+.+..++  +++++.++ ..+ ++|+||+.   ++.+.+++.+++..++++....+
T Consensus       104 ~l~N~~~e~g~~il--its~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~  163 (214)
T PRK06620        104 HIFNIINEKQKYLL--LTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS  163 (214)
T ss_pred             HHHHHHHhcCCEEE--EEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence            00111112233333  44442222 235 99999996   89999999999999998876543

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.25  E-value=2e-11  Score=98.03  Aligned_cols=144  Identities=17%  Similarity=0.249  Sum_probs=77.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec-----ccccchhh-hhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA-----GSEIYSLE-MNKTEEE   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~-----~~~~~~~~-~~~~~~~   74 (174)
                      |+|++++++.+....       ..+.++||.||||||||++|+++++..+...+|....     ..++++.. +....+.
T Consensus        22 i~gre~vI~lll~aa-------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~   94 (498)
T PRK13531         22 LYERSHAIRLCLLAA-------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE   94 (498)
T ss_pred             ccCcHHHHHHHHHHH-------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhc
Confidence            578888886655544       3457999999999999999999999875432333222     22222211 1111100


Q ss_pred             h---hhccC------cEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCCC---CCCH
Q psy14616         75 T---EMIEG------EVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPI  134 (174)
Q Consensus        75 ~---~~~~~------~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~  134 (174)
                      .   ...+|      .++.+||.++ +.   ..++.        .+..  -.....++...+  ++++ |+..   ...+
T Consensus        95 g~f~r~~~G~L~~A~lLfLDEI~ra-sp---~~QsaLLeam~Er~~t~--g~~~~~lp~rfi--v~AT-N~LPE~g~~le  165 (498)
T PRK13531         95 GRYQRLTSGYLPEAEIVFLDEIWKA-GP---AILNTLLTAINERRFRN--GAHEEKIPMRLL--VTAS-NELPEADSSLE  165 (498)
T ss_pred             CchhhhcCCccccccEEeecccccC-CH---HHHHHHHHHHHhCeEec--CCeEEeCCCcEE--EEEC-CCCcccCCchH
Confidence            1   12223      2444555544 22   12221        1111  122223333333  3344 5322   2446


Q ss_pred             Hhhcce-eeEecCCCC-HHHHHHHHHHH
Q psy14616        135 DLLDRM-VIIPTQPYQ-DEEIQAILKIR  160 (174)
Q Consensus       135 ~l~sR~-~~i~~~~~~-~~e~~~il~~~  160 (174)
                      ++.+|| ..+.+++++ .++..++|...
T Consensus       166 AL~DRFliri~vp~l~~~~~e~~lL~~~  193 (498)
T PRK13531        166 ALYDRMLIRLWLDKVQDKANFRSMLTSQ  193 (498)
T ss_pred             HhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence            999999 568888887 45667888764

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=2.9e-11  Score=101.51  Aligned_cols=150  Identities=26%  Similarity=0.348  Sum_probs=87.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhhhhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMNKTE-------   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~-------   72 (174)
                      +||.++-++.....+   ..  ...+|-+|.|+||||||.++..+|.++ +.++| ..+....+++.+++...       
T Consensus       172 vIGRd~EI~r~iqIL---~R--R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP-~~L~~~~i~sLD~g~LvAGakyRG  245 (786)
T COG0542         172 VIGRDEEIRRTIQIL---SR--RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVP-ESLKDKRIYSLDLGSLVAGAKYRG  245 (786)
T ss_pred             CcChHHHHHHHHHHH---hc--cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCC-HHHcCCEEEEecHHHHhccccccC
Confidence            578766664433322   22  223688999999999999999999988 33343 22455556666666555       


Q ss_pred             ----------hhhhhccC-cEEEEEEeccCCCCCCccceeEEEecc-chhhhccccccchhhhcccCCCC----CCCHHh
Q psy14616         73 ----------EETEMIEG-EVVEIQIERPATGLGSKVGKLTMKTTE-METSYDLGAKMIEAIGTAYSSPH----GIPIDL  136 (174)
Q Consensus        73 ----------~~~~~~~~-~i~~~~id~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~----~l~~~l  136 (174)
                                ++.+..+. .++++|+|-+. +.+...+. .+.... +...  +...-+.+|++|+-..+    .-+++|
T Consensus       246 eFEeRlk~vl~ev~~~~~vILFIDEiHtiV-GAG~~~G~-a~DAaNiLKPa--LARGeL~~IGATT~~EYRk~iEKD~AL  321 (786)
T COG0542         246 EFEERLKAVLKEVEKSKNVILFIDEIHTIV-GAGATEGG-AMDAANLLKPA--LARGELRCIGATTLDEYRKYIEKDAAL  321 (786)
T ss_pred             cHHHHHHHHHHHHhcCCCeEEEEechhhhc-CCCccccc-ccchhhhhHHH--HhcCCeEEEEeccHHHHHHHhhhchHH
Confidence                      11111122 23334555542 22212222 222111 1111  22222333665544432    358999


Q ss_pred             hcceeeEecCCCCHHHHHHHHHHH
Q psy14616        137 LDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       137 ~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      -+|||.|.+..|+.++...||+..
T Consensus       322 ~RRFQ~V~V~EPs~e~ti~ILrGl  345 (786)
T COG0542         322 ERRFQKVLVDEPSVEDTIAILRGL  345 (786)
T ss_pred             HhcCceeeCCCCCHHHHHHHHHHH
Confidence            999999999999999999999983

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.24  E-value=2e-11  Score=92.85  Aligned_cols=137  Identities=12%  Similarity=0.101  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh---hhhhhhhhhc--
Q psy14616          4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM---NKTEEETEMI--   78 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--   78 (174)
                      |..++   ..+..++++++.+ |.+||+||  +||+++|+++|+.+.|..+.....|+.|.++..   +.-.|...+.  
T Consensus         7 q~~~~---~~L~~~~~~~rl~-hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~   80 (290)
T PRK07276          7 QPKVF---QRFQTILEQDRLN-HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ   80 (290)
T ss_pred             HHHHH---HHHHHHHHcCCcc-eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC
Confidence            45555   7777788899887 99999996  689999999999997653211112222221110   0000000000  


Q ss_pred             -----------------------cCc-EEEEEEeccCCCCCCccceeEEEeccchhhhcccc--ccchhhhcccCCCCCC
Q psy14616         79 -----------------------EGE-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGA--KMIEAIGTAYSSPHGI  132 (174)
Q Consensus        79 -----------------------~~~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~l  132 (174)
                                             ..+ +++.+.|++ +.   +..|..++      +.+.++  +.|  |..+ +.+..+
T Consensus        81 ~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-~~---~AaNaLLK------tLEEPp~~t~~--iL~t-~~~~~l  147 (290)
T PRK07276         81 GQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-HV---NAANSLLK------VIEEPQSEIYI--FLLT-NDENKV  147 (290)
T ss_pred             CCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-CH---HHHHHHHH------HhcCCCCCeEE--EEEE-CChhhC
Confidence                                   112 233344444 21   12222222      222222  334  3344 568899


Q ss_pred             CHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        133 PIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      .|+++|||+.++|++ +.+++.++++..
T Consensus       148 LpTI~SRcq~i~f~~-~~~~~~~~L~~~  174 (290)
T PRK07276        148 LPTIKSRTQIFHFPK-NEAYLIQLLEQK  174 (290)
T ss_pred             chHHHHcceeeeCCC-cHHHHHHHHHHc
Confidence            999999999999977 778888888754

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.24  E-value=2e-11  Score=94.58  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=32.2

Q ss_pred             hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      |.++ ..+..++++++|||+.+.|++++.++..++|+..
T Consensus       147 Ilvt-h~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~  184 (325)
T PRK08699        147 LLVS-HAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER  184 (325)
T ss_pred             EEEe-CChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence            4455 4667899999999999999999999999998764

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.24  E-value=4.1e-11  Score=95.80  Aligned_cols=146  Identities=15%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhhhhhhh-----hhhhc--cCc
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEMNKTEE-----ETEMI--EGE   81 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~   81 (174)
                      ....+..++.......++|+||||+|||+|++++++++..   ...+..+++..+.........+     -.+.+  .+.
T Consensus       123 ~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl  202 (405)
T TIGR00362       123 AAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDL  202 (405)
T ss_pred             HHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCE
Confidence            4444444442222357899999999999999999998732   2334555654443222211111     01111  234


Q ss_pred             EEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHH
Q psy14616         82 VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQA  155 (174)
Q Consensus        82 i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~  155 (174)
                      ++++++|.+....  ..+...+.  -+....+....+   +.++...+.   .+++.++|||   .++.+.+|+.+++..
T Consensus       203 LiiDDi~~l~~~~--~~~~~l~~--~~n~~~~~~~~i---iits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~  275 (405)
T TIGR00362       203 LLIDDIQFLAGKE--RTQEEFFH--TFNALHENGKQI---VLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA  275 (405)
T ss_pred             EEEehhhhhcCCH--HHHHHHHH--HHHHHHHCCCCE---EEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence            6667777652221  01111110  011111112222   334434443   3678999999   479999999999999


Q ss_pred             HHHHHhchh
Q psy14616        156 ILKIRLVKN  164 (174)
Q Consensus       156 il~~~l~~~  164 (174)
                      |++.....+
T Consensus       276 il~~~~~~~  284 (405)
T TIGR00362       276 ILQKKAEEE  284 (405)
T ss_pred             HHHHHHHHc
Confidence            999987553

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK05642 DNA replication initiation factor; Validated

Probab=99.24  E-value=8.1e-11  Score=87.45  Aligned_cols=126  Identities=17%  Similarity=0.207  Sum_probs=68.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhhhhhhh-hcc-CcEEEEEEeccCCCCCCcc-cee
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTEEETE-MIE-GEVVEIQIERPATGLGSKV-GKL  101 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~id~~~~~~~~~~-~~~  101 (174)
                      .+++|+||+|+|||+|++++++++. ......+++..++... .   .+..+ +.. ..+++++++.. .+.  +. +..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-~---~~~~~~~~~~d~LiiDDi~~~-~~~--~~~~~~  118 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-G---PELLDNLEQYELVCLDDLDVI-AGK--ADWEEA  118 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-h---HHHHHhhhhCCEEEEechhhh-cCC--hHHHHH
Confidence            6889999999999999999998652 1122344444443321 0   11111 111 23444555543 221  11 111


Q ss_pred             EEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHhch
Q psy14616        102 TMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .|. . .....+....+   +.+++..+   ....|.++|||   .++.+.+++.+++..+++.+...
T Consensus       119 Lf~-l-~n~~~~~g~~i---lits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~  181 (234)
T PRK05642        119 LFH-L-FNRLRDSGRRL---LLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR  181 (234)
T ss_pred             HHH-H-HHHHHhcCCEE---EEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence            100 0 01111112222   33443334   22479999999   88999999999999999965433

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.23  E-value=7e-11  Score=87.35  Aligned_cols=123  Identities=15%  Similarity=0.125  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhhhhhhhhhh-ccCcEEEEEEeccCCCCCCcccee
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMNKTEEETEM-IEGEVVEIQIERPATGLGSKVGKL  101 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~id~~~~~~~~~~~~~  101 (174)
                      ...+++|+||+|||||++|+++++.+ ........+++......       .... ..+.++++++|.+ +.   ..+..
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~liiDdi~~l-~~---~~~~~  109 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA-------FDFDPEAELYAVDDVERL-DD---AQQIA  109 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH-------HhhcccCCEEEEeChhhc-Cc---hHHHH
Confidence            34799999999999999999999876 22234455555443211       0111 1234666677665 32   11111


Q ss_pred             EEEeccchhhhccccccchhhhcccCCC--CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHh
Q psy14616        102 TMKTTEMETSYDLGAKMIEAIGTAYSSP--HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l  161 (174)
                      .+.  .+..........+  +.+++..+  ..+.+.+.|||   ..++++++++++...+++...
T Consensus       110 L~~--~~~~~~~~~~~~v--l~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~  170 (227)
T PRK08903        110 LFN--LFNRVRAHGQGAL--LVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA  170 (227)
T ss_pred             HHH--HHHHHHHcCCcEE--EEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence            100  1111111122212  23332222  23568899997   689999999988888887644

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.23  E-value=6.2e-11  Score=94.47  Aligned_cols=27  Identities=44%  Similarity=0.619  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +++++|+||||||||++|+.+|..++.
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            469999999999999999999998854

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.23  E-value=2.6e-11  Score=98.18  Aligned_cols=145  Identities=15%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhhhhhhh-----hhhh--ccCc
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEMNKTEE-----ETEM--IEGE   81 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~   81 (174)
                      ..+....++.......++|+||||+|||++++++++++...   .....+++..+..........     ..+.  ....
T Consensus       135 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl  214 (450)
T PRK00149        135 AAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDV  214 (450)
T ss_pred             HHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCE
Confidence            34444444322223579999999999999999999988322   334455555443322222110     0111  1334


Q ss_pred             EEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEecCCCCHHHHHH
Q psy14616         82 VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQA  155 (174)
Q Consensus        82 i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~~~e~~~  155 (174)
                      ++++++|.+....  ..+...+.  -+...++....+   +.+++..+..   +.+.++|||   .++.+.+|+.+++.+
T Consensus       215 LiiDDi~~l~~~~--~~~~~l~~--~~n~l~~~~~~i---iits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~  287 (450)
T PRK00149        215 LLIDDIQFLAGKE--RTQEEFFH--TFNALHEAGKQI---VLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA  287 (450)
T ss_pred             EEEehhhhhcCCH--HHHHHHHH--HHHHHHHCCCcE---EEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence            5666776552221  11111110  011112222222   3344344433   679999999   589999999999999


Q ss_pred             HHHHHhch
Q psy14616        156 ILKIRLVK  163 (174)
Q Consensus       156 il~~~l~~  163 (174)
                      |++.....
T Consensus       288 il~~~~~~  295 (450)
T PRK00149        288 ILKKKAEE  295 (450)
T ss_pred             HHHHHHHH
Confidence            99998754

>PHA02244 ATPase-like protein

Probab=99.22  E-value=3.2e-11  Score=93.87  Aligned_cols=129  Identities=19%  Similarity=0.177  Sum_probs=69.3

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhh-------hhhhhh---hhc-cC
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMN-------KTEEET---EMI-EG   80 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~-~~   80 (174)
                      ..+..+++.    +.+++|+||||||||++|+++|+.++.  +++.++.... ...+.       ...+..   ... .+
T Consensus       110 ~ri~r~l~~----~~PVLL~GppGtGKTtLA~aLA~~lg~--pfv~In~l~d-~~~L~G~i~~~g~~~dgpLl~A~~~Gg  182 (383)
T PHA02244        110 ADIAKIVNA----NIPVFLKGGAGSGKNHIAEQIAEALDL--DFYFMNAIMD-EFELKGFIDANGKFHETPFYEAFKKGG  182 (383)
T ss_pred             HHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhCC--CEEEEecChH-HHhhcccccccccccchHHHHHhhcCC
Confidence            344444444    358999999999999999999999984  4666553210 00110       000000   012 34


Q ss_pred             cEEEEEEeccCCCCC------CccceeEEEeccchhhhccccccchhhhcccCCC-----------CCCCHHhhcceeeE
Q psy14616         81 EVVEIQIERPATGLG------SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP-----------HGIPIDLLDRMVII  143 (174)
Q Consensus        81 ~i~~~~id~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~l~~~l~sR~~~i  143 (174)
                      .++++|+|.+.....      .+...+.+.    ..... .+.-|..|+|+ |..           ..+++++++||..+
T Consensus       183 vLiLDEId~a~p~vq~~L~~lLd~r~l~l~----g~~i~-~h~~FRlIATs-N~~~~G~~~~y~G~k~L~~AllDRFv~I  256 (383)
T PHA02244        183 LFFIDEIDASIPEALIIINSAIANKFFDFA----DERVT-AHEDFRVISAG-NTLGKGADHIYVARNKIDGATLDRFAPI  256 (383)
T ss_pred             EEEEeCcCcCCHHHHHHHHHHhccCeEEec----CcEEe-cCCCEEEEEee-CCCccCcccccCCCcccCHHHHhhcEEe
Confidence            566678876521110      001111111    11111 11223336666 542           45899999999999


Q ss_pred             ecCCCCHHHH
Q psy14616        144 PTQPYQDEEI  153 (174)
Q Consensus       144 ~~~~~~~~e~  153 (174)
                      +++.+++.|.
T Consensus       257 ~~dyp~~~E~  266 (383)
T PHA02244        257 EFDYDEKIEH  266 (383)
T ss_pred             eCCCCcHHHH
Confidence            9988874443

>KOG2035|consensus

Probab=99.21  E-value=3.8e-11  Score=89.28  Aligned_cols=41  Identities=27%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             cccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhchh
Q psy14616        124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       124 ~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ..+|..+++.++++|||..++.+.|+++|+..+++..+.++
T Consensus       162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE  202 (351)
T KOG2035|consen  162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE  202 (351)
T ss_pred             EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            33488899999999999999999999999999999977554

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.21  E-value=7.2e-11  Score=86.85  Aligned_cols=133  Identities=19%  Similarity=0.278  Sum_probs=70.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhhhh-----hh-hhc-cCcEEEEEEeccCCCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKTEE-----ET-EMI-EGEVVEIQIERPATGLG   95 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~-~~~i~~~~id~~~~~~~   95 (174)
                      ..+++|||+|+|||+|.+++++++   .......+++...+.........+     -. ... ...+++++++.+ .+..
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l-~~~~  113 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL-AGKQ  113 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG-TTHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh-cCch
Confidence            478999999999999999999875   233445566655544322222211     11 111 234555666665 2210


Q ss_pred             CccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616         96 SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                       ..+...|.  -..........+   +.++...|.   .+.+.|.||+   .++++.+|+.+++.+++++....+.
T Consensus       114 -~~q~~lf~--l~n~~~~~~k~l---i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~  183 (219)
T PF00308_consen  114 -RTQEELFH--LFNRLIESGKQL---ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG  183 (219)
T ss_dssp             -HHHHHHHH--HHHHHHHTTSEE---EEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHH--HHHHHHhhCCeE---EEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence             00111111  011111222333   334434443   3679999999   6899999999999999999776544

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.20  E-value=7e-12  Score=85.76  Aligned_cols=33  Identities=42%  Similarity=0.595  Sum_probs=26.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA   59 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~   59 (174)
                      +++|+||||||||++|+.+|+.++.....+.++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~   33 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCS   33 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-T
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEec
Confidence            589999999999999999999997553333333

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.18  E-value=8.6e-11  Score=86.61  Aligned_cols=145  Identities=17%  Similarity=0.165  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhhhhhccCcE
Q psy14616          4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEETEMIEGEV   82 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (174)
                      .+.+..++..+   +...  .+.+++|+||+|||||++|+++++.+.. ...+..+++..+.... ....+.. ...+.+
T Consensus        22 ~~~~~~~l~~~---~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~lL   94 (226)
T TIGR03420        22 NAELLAALRQL---AAGK--GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD-PEVLEGL-EQADLV   94 (226)
T ss_pred             cHHHHHHHHHH---HhcC--CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-HHHHhhc-ccCCEE
Confidence            44455444443   3332  2469999999999999999999988732 2345555554443211 0000000 012346


Q ss_pred             EEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC--C-CHHhhcce---eeEecCCCCHHHHHHH
Q psy14616         83 VEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG--I-PIDLLDRM---VIIPTQPYQDEEIQAI  156 (174)
Q Consensus        83 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--l-~~~l~sR~---~~i~~~~~~~~e~~~i  156 (174)
                      +++++|.+....  ..+...+.  .+....+... .+  +.+++..+..  . .+.+.+|+   ..+++++++.++...+
T Consensus        95 vIDdi~~l~~~~--~~~~~L~~--~l~~~~~~~~-~i--Iits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~  167 (226)
T TIGR03420        95 CLDDVEAIAGQP--EWQEALFH--LYNRVREAGG-RL--LIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAA  167 (226)
T ss_pred             EEeChhhhcCCh--HHHHHHHH--HHHHHHHcCC-eE--EEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHH
Confidence            667777652210  00111000  0011111112 22  3444333333  2 38899998   4799999999999999


Q ss_pred             HHHHhc
Q psy14616        157 LKIRLV  162 (174)
Q Consensus       157 l~~~l~  162 (174)
                      ++....
T Consensus       168 l~~~~~  173 (226)
T TIGR03420       168 LQSRAA  173 (226)
T ss_pred             HHHHHH
Confidence            987653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.17  E-value=3.3e-10  Score=83.44  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=87.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhcc
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMIE   79 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (174)
                      ++|.|.-++.+..-....-+|.. .+|+||+|+.|||||++++++..+.... ...+.+....+...  ..+.+.-.-.+
T Consensus        29 L~Gie~Qk~~l~~Nt~~Fl~G~p-annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l--~~l~~~l~~~~  105 (249)
T PF05673_consen   29 LIGIERQKEALIENTEQFLQGLP-ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL--PELLDLLRDRP  105 (249)
T ss_pred             hcCHHHHHHHHHHHHHHHHcCCC-CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH--HHHHHHHhcCC
Confidence            57888888887766666666764 4899999999999999999999887432 33444544433221  11111111122


Q ss_pred             CcEEEEEEecc-CCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC---------------C------C--H
Q psy14616         80 GEVVEIQIERP-ATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG---------------I------P--I  134 (174)
Q Consensus        80 ~~i~~~~id~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~---------------l------~--~  134 (174)
                       .-+++++|.+ |...  +..--.++..-....... .|+++  .||+ |+-.-               +      .  -
T Consensus       106 -~kFIlf~DDLsFe~~--d~~yk~LKs~LeGgle~~P~Nvli--yATS-NRRHLv~E~~~d~~~~~~~eih~~d~~eEkl  179 (249)
T PF05673_consen  106 -YKFILFCDDLSFEEG--DTEYKALKSVLEGGLEARPDNVLI--YATS-NRRHLVPESFSDREDIQDDEIHPSDTIEEKL  179 (249)
T ss_pred             -CCEEEEecCCCCCCC--cHHHHHHHHHhcCccccCCCcEEE--EEec-chhhccchhhhhccCCCccccCcchHHHHHH
Confidence             3455667766 3322  111111111000111111 12222  3444 33211               1      1  3


Q ss_pred             Hhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        135 DLLDRM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       135 ~l~sR~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      +|.+|| ..+.|.+++.++-.+|++.++.
T Consensus       180 SLsDRFGL~l~F~~~~q~~YL~IV~~~~~  208 (249)
T PF05673_consen  180 SLSDRFGLWLSFYPPDQEEYLAIVRHYAE  208 (249)
T ss_pred             hHHHhCCcEEEecCCCHHHHHHHHHHHHH
Confidence            466999 7899999999999999999874

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.16  E-value=9.9e-11  Score=88.83  Aligned_cols=41  Identities=24%  Similarity=0.300  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      -..+...+++|+.+ |.+||+||+|+||+++|.++|+.+.|.
T Consensus         6 ~~~L~~~i~~~rl~-HAyLf~G~~G~Gk~~lA~~~A~~llC~   46 (290)
T PRK05917          6 WEALIQRVRDQKVP-SAIILHGQDLSNLSARAYELASLILKE   46 (290)
T ss_pred             HHHHHHHHHcCCcC-eeEeeECCCCCcHHHHHHHHHHHHhCC
Confidence            35677788899987 999999999999999999999999764

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.16  E-value=5.7e-11  Score=95.71  Aligned_cols=131  Identities=14%  Similarity=0.148  Sum_probs=74.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhhhhhh-----hhhhh---ccCcEEEEEEeccCCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEMNKTE-----EETEM---IEGEVVEIQIERPATGL   94 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~i~~~~id~~~~~~   94 (174)
                      .+++||||||+|||+|++++|+.+..   ......+++..+.........     +-.+.   .+..+++++++......
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~  210 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT  210 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence            57999999999999999999998722   223445555443332221111     11111   13455666666552221


Q ss_pred             CCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhccee---eEecCCCCHHHHHHHHHHHhch
Q psy14616         95 GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRMV---IIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~~---~i~~~~~~~~e~~~il~~~l~~  163 (174)
                        ..+...|.  .+....+....+   +.++...+..   +.+.+.|||.   ++.+.+|+.+++..|+++....
T Consensus       211 --~~q~elf~--~~n~l~~~~k~i---Iitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~  278 (440)
T PRK14088        211 --GVQTELFH--TFNELHDSGKQI---VICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI  278 (440)
T ss_pred             --HHHHHHHH--HHHHHHHcCCeE---EEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence              11111111  011222222222   3344344433   5688999994   8999999999999999987654

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.16  E-value=4.3e-12  Score=84.52  Aligned_cols=107  Identities=25%  Similarity=0.394  Sum_probs=48.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-ccchhhhhhhh--h----hh-----hhccCcEEEEEEeccCCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-EIYSLEMNKTE--E----ET-----EMIEGEVVEIQIERPATGL   94 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~--~----~~-----~~~~~~i~~~~id~~~~~~   94 (174)
                      |+||.|+||+|||++|+++|+.++..  |..+... ++...++.+..  +    ..     -++.+.++.+||+++..+.
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~--f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappkt   78 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLS--FKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKT   78 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT----EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHH
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCc--eeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHH
Confidence            68999999999999999999999965  4444332 23333332222  1    11     1233456666776662221


Q ss_pred             CC------ccceeEEEeccchhhhccccccchhhhcccCCC-----CCCCHHhhccee
Q psy14616         95 GS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP-----HGIPIDLLDRMV  141 (174)
Q Consensus        95 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~l~sR~~  141 (174)
                      +.      .+..+..    ....+.++...++ |||. |+.     +.+++++++||.
T Consensus        79 QsAlLeam~Er~Vt~----~g~~~~lp~pf~V-iATq-Np~e~~Gty~Lpea~~DRF~  130 (131)
T PF07726_consen   79 QSALLEAMEERQVTI----DGQTYPLPDPFFV-IATQ-NPVEQEGTYPLPEAQLDRFM  130 (131)
T ss_dssp             HHHHHHHHHHSEEEE----TTEEEE--SS-EE-EEEE--TT--S------HHHHTTSS
T ss_pred             HHHHHHHHHcCeEEe----CCEEEECCCcEEE-EEec-CccccCceecCCHHHhcccc
Confidence            10      1111111    1223445554441 4444 765     359999999985

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.15  E-value=3.2e-10  Score=86.79  Aligned_cols=137  Identities=11%  Similarity=0.109  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---------C--eeeec--ccccchhhhhhhhhhhhh
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---------P--FTSMA--GSEIYSLEMNKTEEETEM   77 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---------~--~~~~~--~~~~~~~~~~~~~~~~~~   77 (174)
                      +..+.+.+++|+.+ |.+||+|+.|+||+++++.+++.+.|..         +  +..++  ...+...++....+....
T Consensus         5 ~~~l~~~i~~~~l~-haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~   83 (299)
T PRK07132          5 IKFLDNSATQNKIS-HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYF   83 (299)
T ss_pred             HHHHHHHHHhCCCC-eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhcc
Confidence            36777888888887 8999999999999999999999985521         1  11122  111111111111111122


Q ss_pred             cc---C--c-EEEEEEeccCCCCCCccceeEEEeccchhhhcccc-ccchhhhcccCCCCCCCHHhhcceeeEecCCCCH
Q psy14616         78 IE---G--E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGA-KMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQD  150 (174)
Q Consensus        78 ~~---~--~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~  150 (174)
                      .+   |  + +++.+.|++ +.   ..++..++.     ..+.+. +.+  |..+ +.+..+.++++|||++++|.++++
T Consensus        84 ~~~~~~~~KvvII~~~e~m-~~---~a~NaLLK~-----LEEPp~~t~~--il~~-~~~~kll~TI~SRc~~~~f~~l~~  151 (299)
T PRK07132         84 SSFVQSQKKILIIKNIEKT-SN---SLLNALLKT-----IEEPPKDTYF--LLTT-KNINKVLPTIVSRCQVFNVKEPDQ  151 (299)
T ss_pred             CCcccCCceEEEEeccccc-CH---HHHHHHHHH-----hhCCCCCeEE--EEEe-CChHhChHHHHhCeEEEECCCCCH
Confidence            22   2  2 333344554 21   122211111     112222 333  3334 356889999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy14616        151 EEIQAILKIR  160 (174)
Q Consensus       151 ~e~~~il~~~  160 (174)
                      +++.++|...
T Consensus       152 ~~l~~~l~~~  161 (299)
T PRK07132        152 QKILAKLLSK  161 (299)
T ss_pred             HHHHHHHHHc
Confidence            9999888774

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.13  E-value=3.9e-10  Score=91.08  Aligned_cols=146  Identities=16%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhhhhhhhh-------hhh-hc-c
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLEMNKTEE-------ETE-MI-E   79 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~-~   79 (174)
                      .......++......+++|+|++|+|||+|++++++++.   ......+++..++..........       ..+ .. .
T Consensus       128 ~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  207 (450)
T PRK14087        128 IAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQN  207 (450)
T ss_pred             HHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccC
Confidence            444444443222235799999999999999999999763   22334556655544332222111       001 11 2


Q ss_pred             CcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHH
Q psy14616         80 GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEI  153 (174)
Q Consensus        80 ~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~  153 (174)
                      ..+++++++.+....  ..+...|.  .+....+....+   +.++...|   ..+.+.|.|||   .++.+.+|+.+++
T Consensus       208 dvLiIDDiq~l~~k~--~~~e~lf~--l~N~~~~~~k~i---Iltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r  280 (450)
T PRK14087        208 DVLIIDDVQFLSYKE--KTNEIFFT--IFNNFIENDKQL---FFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA  280 (450)
T ss_pred             CEEEEeccccccCCH--HHHHHHHH--HHHHHHHcCCcE---EEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence            234555655442111  11111111  011111222222   33443344   33679999999   5899999999999


Q ss_pred             HHHHHHHhchh
Q psy14616        154 QAILKIRLVKN  164 (174)
Q Consensus       154 ~~il~~~l~~~  164 (174)
                      .++|++.+...
T Consensus       281 ~~iL~~~~~~~  291 (450)
T PRK14087        281 TAIIKKEIKNQ  291 (450)
T ss_pred             HHHHHHHHHhc
Confidence            99999988654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.13  E-value=2e-10  Score=94.71  Aligned_cols=132  Identities=16%  Similarity=0.177  Sum_probs=76.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhhhhhhhh-----hhhc--cCcEEEEEEeccCCCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEMNKTEEE-----TEMI--EGEVVEIQIERPATGLG   95 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~i~~~~id~~~~~~~   95 (174)
                      +.++|||++|+|||+|+.++++.+..   .....+++...+.........+.     .+.+  ...+++++|+.+.... 
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke-  393 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE-  393 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH-
Confidence            45899999999999999999998732   23345555554443222222111     0111  2345566666552221 


Q ss_pred             CccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616         96 SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       ..+...|.  -+...++....+   +.++...+   ..+++.|+|||   .++.+.+++.+.+..||+++...+
T Consensus       394 -~tqeeLF~--l~N~l~e~gk~I---IITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r  462 (617)
T PRK14086        394 -STQEEFFH--TFNTLHNANKQI---VLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE  462 (617)
T ss_pred             -HHHHHHHH--HHHHHHhcCCCE---EEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence             11111111  112222222222   33443333   34789999999   678999999999999999977554

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.13  E-value=1.7e-10  Score=96.06  Aligned_cols=52  Identities=19%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++||++.++.+..+...+..+..+++.++|+||||+|||++++.+|+.++..
T Consensus        86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~  137 (637)
T TIGR00602        86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ  137 (637)
T ss_pred             hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence            5788888866555544333333344569999999999999999999988743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.11  E-value=1.8e-10  Score=89.74  Aligned_cols=45  Identities=29%  Similarity=0.432  Sum_probs=35.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ||||++++.+|..   ...+...  .++||.||+|||||++|+.+++.+.
T Consensus        19 ivGq~~~k~al~~---~~~~p~~--~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         19 IVGQEEMKLALIL---NVIDPKI--GGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             HhChHHHHHHHHH---hccCCCC--CeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            6899999955543   3344443  4899999999999999999988773

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.09  E-value=3e-10  Score=91.55  Aligned_cols=132  Identities=17%  Similarity=0.227  Sum_probs=73.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh-----hhhhh--ccCcEEEEEEeccCCCCCCc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE-----EETEM--IEGEVVEIQIERPATGLGSK   97 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~i~~~~id~~~~~~~~~   97 (174)
                      ++++||||+|+|||+|++++++++.. .....+++...+.........     .-...  ..+.+++++++.+ .+.. .
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l-~~k~-~  219 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVF-SGKG-A  219 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhh-cCCh-h
Confidence            57999999999999999999998732 123344444333221111111     00111  1234555566554 2210 1


Q ss_pred             cceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616         98 VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      .+...|.  .+....+....+   +.++...+   ..+.+.++|||   .++.+.+|+.+++..+|++.....
T Consensus       220 ~qeelf~--l~N~l~~~~k~I---Ilts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~  287 (445)
T PRK12422        220 TQEEFFH--TFNSLHTEGKLI---VISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL  287 (445)
T ss_pred             hHHHHHH--HHHHHHHCCCcE---EEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence            1111111  011111112222   34443444   34679999999   689999999999999999876543

>PRK09087 hypothetical protein; Validated

Probab=99.09  E-value=2.7e-10  Score=84.18  Aligned_cols=119  Identities=19%  Similarity=0.204  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccCcEEEEEEeccCCCCCCccceeEEEe
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKT  105 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~  105 (174)
                      ..++|+||+|+||||+++++++..+.  .  .++...+.....      ..+..+.++++++|.. ...  +..  .|. 
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~--~--~i~~~~~~~~~~------~~~~~~~l~iDDi~~~-~~~--~~~--lf~-  108 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDA--L--LIHPNEIGSDAA------NAAAEGPVLIEDIDAG-GFD--ETG--LFH-  108 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCC--E--EecHHHcchHHH------HhhhcCeEEEECCCCC-CCC--HHH--HHH-
Confidence            46999999999999999999987642  2  223222111000      1122245666666644 221  111  110 


Q ss_pred             ccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        106 TEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       106 ~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       -.....+....++  + +++..+.   ...+.++|||   .++++.+++.+++.+++++....+
T Consensus       109 -l~n~~~~~g~~il--i-ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~  169 (226)
T PRK09087        109 -LINSVRQAGTSLL--M-TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR  169 (226)
T ss_pred             -HHHHHHhCCCeEE--E-ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence             1111122222232  3 3323332   2479999999   899999999999999999987654

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=7.9e-10  Score=86.97  Aligned_cols=150  Identities=18%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh------hhh--
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM------NKT--   71 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~------~~~--   71 (174)
                      +.|.-+..+..+..-+-.|..| .+++++||||||||.+++.+++++-..   ..++++||-..-+.+-      .++  
T Consensus        21 ~Re~ei~~l~~~l~~~~~~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~   99 (366)
T COG1474          21 HREEEINQLASFLAPALRGERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK   99 (366)
T ss_pred             ccHHHHHHHHHHHHHHhcCCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC
Confidence            3344444444433333334444 579999999999999999999988322   2256666543322110      000  


Q ss_pred             -h------hh--h---hhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc---ccccchhhhcccCC--C
Q psy14616         72 -E------EE--T---EMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL---GAKMIEAIGTAYSS--P  129 (174)
Q Consensus        72 -~------~~--~---~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~--~  129 (174)
                       .      .+  .   +..  .+   .++++|+|.+....+    .      -+......   ...-+..++.+++.  .
T Consensus       100 ~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----~------~LY~L~r~~~~~~~~v~vi~i~n~~~~~  169 (366)
T COG1474         100 VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----E------VLYSLLRAPGENKVKVSIIAVSNDDKFL  169 (366)
T ss_pred             CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----h------HHHHHHhhccccceeEEEEEEeccHHHH
Confidence             0      00  0   000  12   345557777644421    0      00111111   11111114444222  2


Q ss_pred             CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhch
Q psy14616        130 HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 ~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ..+++-+.||+  ..|.|+||+.+|+.+||..+...
T Consensus       170 ~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~  205 (366)
T COG1474         170 DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE  205 (366)
T ss_pred             HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence            55889999999  56889999999999999997753

>PRK04132 replication factor C small subunit; Provisional

Probab=99.07  E-value=1.4e-10  Score=98.97  Aligned_cols=126  Identities=16%  Similarity=0.166  Sum_probs=83.3

Q ss_pred             CceEEEEc--CCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhh-hhhhhhh-hhhc--c----CcEEEEEEeccC
Q psy14616         25 GRAILLAG--QPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLE-MNKTEEE-TEMI--E----GEVVEIQIERPA   91 (174)
Q Consensus        25 ~~~~ll~G--ppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~--~----~~i~~~~id~~~   91 (174)
                      +-+.+..|  |++.||||+|+++|+.+.   ....+..+++++..+.+ +...... +...  .    ..++++|+|.+ 
T Consensus       564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L-  642 (846)
T PRK04132        564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL-  642 (846)
T ss_pred             chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC-
Confidence            44666778  999999999999999982   23468899988754332 2222211 1111  1    24666788887 


Q ss_pred             CCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616         92 TGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +.   +.|+..++      +...  .++.|  |.++ |++..+.++++|||+++.|.+++.+++.+.|+....+
T Consensus       643 t~---~AQnALLk------~lEep~~~~~F--ILi~-N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~  704 (846)
T PRK04132        643 TQ---DAQQALRR------TMEMFSSNVRF--ILSC-NYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN  704 (846)
T ss_pred             CH---HHHHHHHH------HhhCCCCCeEE--EEEe-CChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHh
Confidence            33   22332222      1122  23334  4444 7889999999999999999999999999988876543

>KOG0990|consensus

Probab=99.05  E-value=4.4e-11  Score=90.43  Aligned_cols=146  Identities=13%  Similarity=0.083  Sum_probs=87.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe----eeecccccchhhhhhhh--hh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF----TSMAGSEIYSLEMNKTE--EE   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~   74 (174)
                      +++|+++.   ..+.+....++.|  |.|||||||||||+...+.|+.+.+...+    ..++.++.-+.+.....  +.
T Consensus        43 v~~~~ei~---st~~~~~~~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~f  117 (360)
T KOG0990|consen   43 VIKQEPIW---STENRYSGMPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLF  117 (360)
T ss_pred             HhcCCchh---hHHHHhccCCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHH
Confidence            46777777   4444455666666  99999999999999999999998653222    12333333222221111  11


Q ss_pred             h-----hhcc-----CcEEEEEEeccCCCCCCccce-eEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceee
Q psy14616         75 T-----EMIE-----GEVVEIQIERPATGLGSKVGK-LTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVI  142 (174)
Q Consensus        75 ~-----~~~~-----~~i~~~~id~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~  142 (174)
                      +     .++.     ..++.+|.|.+...    .|+ +. +     ..... .+..   ||+-.|.+..+.|++++||..
T Consensus       118 ast~~~~~fst~~~fKlvILDEADaMT~~----AQnALR-R-----viek~t~n~r---F~ii~n~~~ki~pa~qsRctr  184 (360)
T KOG0990|consen  118 ASTQQPTTYSTHAAFKLVILDEADAMTRD----AQNALR-R-----VIEKYTANTR---FATISNPPQKIHPAQQSRCTR  184 (360)
T ss_pred             HhhccceeccccCceeEEEecchhHhhHH----HHHHHH-H-----HHHHhccceE---EEEeccChhhcCchhhccccc
Confidence            1     1121     23555566655222    121 11 0     00111 1222   445558889999999999999


Q ss_pred             EecCCCCHHHHHHHHHHHhchh
Q psy14616        143 IPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       143 i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++|.+++..+....+......+
T Consensus       185 frf~pl~~~~~~~r~shi~e~e  206 (360)
T KOG0990|consen  185 FRFAPLTMAQQTERQSHIRESE  206 (360)
T ss_pred             CCCCCCChhhhhhHHHHHHhcc
Confidence            9999999888877777765443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.04  E-value=5.3e-10  Score=76.04  Aligned_cols=56  Identities=39%  Similarity=0.555  Sum_probs=37.1

Q ss_pred             CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccc
Q psy14616          2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSE   62 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~   62 (174)
                      +|++.....+....   ...  .+++++++||||+|||++++.+++.+. ....+..++...
T Consensus         1 ~~~~~~~~~i~~~~---~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~   57 (151)
T cd00009           1 VGQEEAIEALREAL---ELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD   57 (151)
T ss_pred             CchHHHHHHHHHHH---hCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence            36666665544443   322  346899999999999999999999882 113344444443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.04  E-value=3.1e-10  Score=81.81  Aligned_cols=42  Identities=48%  Similarity=0.748  Sum_probs=34.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+||+.+|+++.....    |   ++|+||+||||||||++|+.+...|
T Consensus         5 I~GQe~aKrAL~iAAa----G---~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen    5 IVGQEEAKRALEIAAA----G---GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             SSSTHHHHHHHHHHHH----C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             hcCcHHHHHHHHHHHc----C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            7999999988887663    2   4799999999999999999999776

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>smart00350 MCM minichromosome maintenance proteins

Probab=99.03  E-value=2.4e-09  Score=87.97  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcC----------CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIA----------GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~----------~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |+|++.++.++....   -+|..+          .-|+||+|+||||||++|+.+++...+
T Consensus       205 i~G~~~~k~~l~l~l---~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r  262 (509)
T smart00350      205 IYGHEDIKKAILLLL---FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR  262 (509)
T ss_pred             ccCcHHHHHHHHHHH---hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc
Confidence            579999885554333   333211          138999999999999999999998754

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.03  E-value=2.8e-09  Score=89.62  Aligned_cols=44  Identities=34%  Similarity=0.462  Sum_probs=35.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ||||++++.++....   .++..  .++||.||||||||++|++++..+
T Consensus         6 ivGq~~~~~al~~~a---v~~~~--g~vli~G~~GtgKs~lar~l~~~l   49 (633)
T TIGR02442         6 IVGQEDLKLALLLNA---VDPRI--GGVLIRGEKGTAKSTAARGLAALL   49 (633)
T ss_pred             hcChHHHHHHHHHHh---hCCCC--CeEEEEcCCCCcHHHHHHHHHHhC
Confidence            799999996664433   34433  479999999999999999999988

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.98  E-value=9.2e-10  Score=85.64  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=34.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ||||++++.++....   -+..  ..++++.|+||+|||+++++++..+
T Consensus         6 ivgq~~~~~al~~~~---~~~~--~g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030         6 IVGQDEMKLALLLNV---IDPK--IGGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             cccHHHHHHHHHHHh---cCCC--CCeEEEEcCCCCCHHHHHHHHHHhh
Confidence            699999996654322   2222  3589999999999999999999876

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.96  E-value=3.7e-09  Score=83.56  Aligned_cols=128  Identities=18%  Similarity=0.268  Sum_probs=74.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecccccchhhhhhhhhh-----hhhcc-CcEEEEEEeccCCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAGSEIYSLEMNKTEEE-----TEMIE-GEVVEIQIERPATGL   94 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~i~~~~id~~~~~~   94 (174)
                      +...++||||+|.|||+|+++++...   +.+..+..++...+....+....+.     .+.+. ..+++++++.+ .+ 
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l-~g-  189 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFL-AG-  189 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHh-cC-
Confidence            44689999999999999999999876   4334466666665554444333321     12221 12333344333 22 


Q ss_pred             CCccceeEEEeccchhhhccccccc----hhhhcccCCCCC---CCHHhhcce---eeEecCCCCHHHHHHHHHHHhc
Q psy14616         95 GSKVGKLTMKTTEMETSYDLGAKMI----EAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~  162 (174)
                               +....+.+++.-|.+.    .++.|+...|..   +.|.|+|||   .++.+.+|+.+.+..||++...
T Consensus       190 ---------k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~  258 (408)
T COG0593         190 ---------KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE  258 (408)
T ss_pred             ---------ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence                     1111122222211111    113344344544   569999999   6799999999999999999543

>KOG0736|consensus

Probab=98.90  E-value=2.6e-09  Score=88.99  Aligned_cols=137  Identities=20%  Similarity=0.284  Sum_probs=86.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhhhhccCcEEEE-EEeccC-CCCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EETEMIEGEVVEI-QIERPA-TGLGS   96 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~-~id~~~-~~~~~   96 (174)
                      ..+||+|+||||||++++++|.++|  .++..+++.++.+..-+..+       ..+...+..++++ .+|-+. +.++.
T Consensus       432 ~~vLLhG~~g~GK~t~V~~vas~lg--~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg  509 (953)
T KOG0736|consen  432 PSVLLHGPPGSGKTTVVRAVASELG--LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG  509 (953)
T ss_pred             eEEEEeCCCCCChHHHHHHHHHHhC--CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc
Confidence            4789999999999999999999999  55777777665542222222       2223334444433 444331 11110


Q ss_pred             ccce----eEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhchhhhh
Q psy14616         97 KVGK----LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVKNERN  167 (174)
Q Consensus        97 ~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~~~~~  167 (174)
                      +...    +..........++.++.++  ++++ +..+.+++.+++-| ..|.++.+++++..+||+-++......
T Consensus       510 ed~rl~~~i~~~ls~e~~~~~~~~~iv--v~t~-~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n  582 (953)
T KOG0736|consen  510 EDARLLKVIRHLLSNEDFKFSCPPVIV--VATT-SSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN  582 (953)
T ss_pred             hhHHHHHHHHHHHhcccccCCCCceEE--EEec-cccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            0000    0000011122334455666  6666 67889999999999 889999999999999999988665544

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=98.89  E-value=8.8e-09  Score=68.55  Aligned_cols=49  Identities=20%  Similarity=0.197  Sum_probs=35.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCce--EEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRA--ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~--~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++||.-|++.+.......-....|.++  +-|+||||||||.+++.+|+.+
T Consensus        27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            589999986655433333233334344  4489999999999999999987

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.86  E-value=3.5e-09  Score=78.97  Aligned_cols=29  Identities=10%  Similarity=0.069  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++|.+||+||+|+||..+|.++|+.+.|.
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~   34 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCT   34 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999765

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.83  E-value=8.6e-09  Score=80.28  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=39.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++|+++++..+-........|.. ..+.++|+||||+||||+|++||+.++.
T Consensus        53 ~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       53 FFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            58999998776655544444433 3467889999999999999999999854

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG1051|consensus

Probab=98.83  E-value=2.3e-08  Score=85.42  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=49.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcC---CceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccc
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIA---GRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSE   62 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~---~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~   62 (174)
                      |+||+++..++......-+.|...   .--++|.||.|||||.+|+++|..+ |.+..++.++.+.
T Consensus       564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse  629 (898)
T KOG1051|consen  564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE  629 (898)
T ss_pred             ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence            689999999988888777765543   3467899999999999999999987 5445566666554

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.9e-09  Score=84.73  Aligned_cols=42  Identities=45%  Similarity=0.654  Sum_probs=36.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+||+.+|++++...       ..+||+||+||||||||++|+.+...|
T Consensus       181 V~GQ~~AKrAleiAA-------AGgHnLl~~GpPGtGKTmla~Rl~~lL  222 (490)
T COG0606         181 VKGQEQAKRALEIAA-------AGGHNLLLVGPPGTGKTMLASRLPGLL  222 (490)
T ss_pred             hcCcHHHHHHHHHHH-------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence            689999998888776       246899999999999999999887655

>PHA00729 NTP-binding motif containing protein

Probab=98.80  E-value=4.5e-08  Score=71.81  Aligned_cols=31  Identities=13%  Similarity=0.059  Sum_probs=27.5

Q ss_pred             CCCCHHhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      ..+.++++||+..+.+.+++++++.+.++.+
T Consensus       109 f~L~~aLrSR~~l~il~~ls~edL~~~Lr~R  139 (226)
T PHA00729        109 YKIYALIRTRVSAVIFTTPSPEDLAFYLREK  139 (226)
T ss_pred             HHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence            3478899999999999999999999999884

>KOG1969|consensus

Probab=98.78  E-value=4.3e-08  Score=81.51  Aligned_cols=134  Identities=19%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh----------hhhhhccCcEEEEEEecc
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE----------EETEMIEGEVVEIQIERP   90 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~~id~~   90 (174)
                      ++.+.+-+||+||||.||||||+.+|+..|  +..+.+|+++--+..+-...          ..++..|--++++|||..
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG--YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa  399 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG--YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA  399 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcC--ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence            333446788999999999999999999999  44678888765543332211          112344667888899865


Q ss_pred             CCCC--------------CCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHH
Q psy14616         91 ATGL--------------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAI  156 (174)
Q Consensus        91 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~i  156 (174)
                      ....              ....+.-.-. ........+-..-+  ||-.+|.+..-...|+--++++.|.++++.-+.+-
T Consensus       400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~-~rkkkr~~~L~RPI--ICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~R  476 (877)
T KOG1969|consen  400 PRAAVDVILSLVKATNKQATGKQAKKDK-KRKKKRSKLLTRPI--ICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVER  476 (877)
T ss_pred             cHHHHHHHHHHHHhhcchhhcCcccchh-hhhhhccccccCCE--EEEecCccchhhhhcccceEEEEecCCChhHHHHH
Confidence            2110              0000000000 00000011111112  44443333334555667779999999998887766


Q ss_pred             HHH
Q psy14616        157 LKI  159 (174)
Q Consensus       157 l~~  159 (174)
                      |+-
T Consensus       477 L~~  479 (877)
T KOG1969|consen  477 LNE  479 (877)
T ss_pred             HHH
Confidence            654

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.78  E-value=1.1e-08  Score=72.53  Aligned_cols=98  Identities=24%  Similarity=0.281  Sum_probs=59.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC--CCCCeeeecccccch----hh-----hhhhhhhhhh-ccCcEEEEEEeccCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG--PDTPFTSMAGSEIYS----LE-----MNKTEEETEM-IEGEVVEIQIERPAT   92 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~--~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~-~~~~i~~~~id~~~~   92 (174)
                      ..+++|.||+|||||.+|+++|+.+.  ...+++.++++.+..    ..     .+........ -.+.|+++|||++..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~   82 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP   82 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence            35899999999999999999999997  234677777766544    11     0000001111 135788899999844


Q ss_pred             CC--C-C----cccee--------EEEeccchhhhccccccchhhhcc
Q psy14616         93 GL--G-S----KVGKL--------TMKTTEMETSYDLGAKMIEAIGTA  125 (174)
Q Consensus        93 ~~--~-~----~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~  125 (174)
                      ..  . +    ..++.        .+.+.. ....+..+.+|  |+|+
T Consensus        83 ~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~~vd~~n~if--I~Ts  127 (171)
T PF07724_consen   83 SNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GRTVDTSNIIF--IMTS  127 (171)
T ss_dssp             TTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CCEEEGTTEEE--EEEE
T ss_pred             cccccchhhHHHHHHHHHHHhcccceeccc-ceEEEeCCceE--EEec
Confidence            11  0 0    11111        233222 35677788888  7777

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>KOG0735|consensus

Probab=98.75  E-value=3.1e-08  Score=82.16  Aligned_cols=140  Identities=19%  Similarity=0.188  Sum_probs=86.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC--CCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccCCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD--TPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPATGL   94 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~~~~   94 (174)
                      ..+++|+||+|+|||.|++++++++-.+  ..+..++|+.+...-...++       .++ ...|..|+.+++|.+++..
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s  510 (952)
T KOG0735|consen  431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS  510 (952)
T ss_pred             cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence            4699999999999999999999988543  22344555555433333332       112 3347788889999885533


Q ss_pred             CCccceeEEEec-------cchhhhccccccchhhhcccCCCCCCCHHhhc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616         95 GSKVGKLTMKTT-------EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus        95 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +.+.+...+...       .+...+.-.+..+..|++. +....++|.|.|  +| .++.+++|...+..+||+....++
T Consensus       511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~-qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~  589 (952)
T KOG0735|consen  511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATG-QELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN  589 (952)
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEec-hhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence            222222211111       1111111122222225555 666778888774  45 578899999999999999877666


Q ss_pred             h
Q psy14616        165 E  165 (174)
Q Consensus       165 ~  165 (174)
                      .
T Consensus       590 ~  590 (952)
T KOG0735|consen  590 L  590 (952)
T ss_pred             h
Confidence            5

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.74  E-value=1.4e-07  Score=69.23  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=87.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhc-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMI-   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (174)
                      ++|.+..++++-.-.....+|... .|+||+|.-||||+++++++-.+.+.. ..++.++-.++...     .+..+.. 
T Consensus        62 l~Gvd~qk~~L~~NT~~F~~G~pA-NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L-----p~l~~~Lr  135 (287)
T COG2607          62 LVGVDRQKEALVRNTEQFAEGLPA-NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL-----PDLVELLR  135 (287)
T ss_pred             HhCchHHHHHHHHHHHHHHcCCcc-cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-----HHHHHHHh
Confidence            578888888877666666667755 899999999999999999998887433 23555555544321     1112221 


Q ss_pred             -cCcEEEEEEecc-CCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCC--------------CC--------
Q psy14616         79 -EGEVVEIQIERP-ATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHG--------------IP--------  133 (174)
Q Consensus        79 -~~~i~~~~id~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~--------------l~--------  133 (174)
                       .+.-++++.|.+ |...  +..--.++..-....... .|++|  .||+ |+..-              +.        
T Consensus       136 ~~~~kFIlFcDDLSFe~g--d~~yK~LKs~LeG~ve~rP~NVl~--YATS-NRRHLl~e~~~dn~~~~~eih~~eaveEK  210 (287)
T COG2607         136 ARPEKFILFCDDLSFEEG--DDAYKALKSALEGGVEGRPANVLF--YATS-NRRHLLPEDMKDNEGSTGEIHPSEAVEEK  210 (287)
T ss_pred             cCCceEEEEecCCCCCCC--chHHHHHHHHhcCCcccCCCeEEE--EEec-CCcccccHhhhhCCCcccccChhHHHHHh
Confidence             234455666665 2221  111001110000001111 22333  4444 33321              21        


Q ss_pred             HHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      -.+-+|| .-+.|.+.++++-.+++..+..+
T Consensus       211 lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~  241 (287)
T COG2607         211 LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH  241 (287)
T ss_pred             hchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence            2355899 67889999999999999997744

>TIGR00368 Mg chelatase-related protein

Probab=98.73  E-value=4.2e-08  Score=80.17  Aligned_cols=42  Identities=40%  Similarity=0.631  Sum_probs=34.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+||+.+++.+....       ..+++++|.||||+|||++++.++..+
T Consensus       194 v~Gq~~~~~al~~aa-------~~g~~vlliG~pGsGKTtlar~l~~ll  235 (499)
T TIGR00368       194 IKGQQHAKRALEIAA-------AGGHNLLLFGPPGSGKTMLASRLQGIL  235 (499)
T ss_pred             hcCcHHHHhhhhhhc-------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence            578999987666544       245799999999999999999999755

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=98.71  E-value=2e-08  Score=78.22  Aligned_cols=156  Identities=19%  Similarity=0.208  Sum_probs=85.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhhh--hh---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTE--EE---   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~---   74 (174)
                      +||+..+.+.+......+..   ...++|++|++||||+++|+++-.... ...+|+.++|+.+........-  ..   
T Consensus         1 liG~S~~m~~~~~~~~~~a~---~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~   77 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAP---LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA   77 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcccccc
Confidence            57777666554443333322   246899999999999999999987664 3468999998765332111100  00   


Q ss_pred             -----------hhhc-cCcEEEEEEeccCCCCCCccce--eEEE-eccchhhh--ccccccchhhhcccCCC------CC
Q psy14616         75 -----------TEMI-EGEVVEIQIERPATGLGSKVGK--LTMK-TTEMETSY--DLGAKMIEAIGTAYSSP------HG  131 (174)
Q Consensus        75 -----------~~~~-~~~i~~~~id~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~------~~  131 (174)
                                 -+.. .|-++++++|.+ +.   +.|.  +.+. +.......  ...+.-+..|++++.+.      ..
T Consensus        78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~  153 (329)
T TIGR02974        78 FTGAQKRHQGRFERADGGTLFLDELATA-SL---LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGR  153 (329)
T ss_pred             ccCcccccCCchhhCCCCEEEeCChHhC-CH---HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCc
Confidence                       0111 234566677766 22   1111  1100 00000000  00011122255553332      34


Q ss_pred             CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      +.+.|..|+  ..|.++++.  .+|+..+++..+..
T Consensus       154 fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~  189 (329)
T TIGR02974       154 FRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIR  189 (329)
T ss_pred             hHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHH
Confidence            678999999  568899998  67888888776644

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>TIGR01817 nifA Nif-specific regulatory protein

Probab=98.70  E-value=3.2e-08  Score=81.93  Aligned_cols=156  Identities=19%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT--------   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~--------   71 (174)
                      +||+..+.+.+......+.   ....+++|+|++|||||++|+++.+... ...+|+.++|..+........        
T Consensus       198 liG~s~~~~~~~~~~~~~a---~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~  274 (534)
T TIGR01817       198 IIGKSPAMRQVVDQARVVA---RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGA  274 (534)
T ss_pred             eEECCHHHHHHHHHHHHHh---CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCc
Confidence            4676666644443333222   2346899999999999999999998764 346899999876533211110        


Q ss_pred             -h----hhh---hh-ccCcEEEEEEeccCCCCCCcccee--EEE-eccchhhhc--cccccchhhhcccCCC------CC
Q psy14616         72 -E----EET---EM-IEGEVVEIQIERPATGLGSKVGKL--TMK-TTEMETSYD--LGAKMIEAIGTAYSSP------HG  131 (174)
Q Consensus        72 -~----~~~---~~-~~~~i~~~~id~~~~~~~~~~~~~--~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~------~~  131 (174)
                       .    ...   +. ..|-++++++|.+ +.   +.|..  .+. +......-.  ..+.-+..|++++.+.      ..
T Consensus       275 ~~~~~~~~~g~~~~a~~GtL~ldei~~L-~~---~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~  350 (534)
T TIGR01817       275 FTGAIAQRKGRFELADGGTLFLDEIGEI-SP---AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGE  350 (534)
T ss_pred             cCCCCcCCCCcccccCCCeEEEechhhC-CH---HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCC
Confidence             0    000   11 1345666777776 32   11211  000 000000000  0001112255553322      34


Q ss_pred             CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      +.+.|..|+  ..|.++++.  .+++..+++..+..
T Consensus       351 f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~  386 (534)
T TIGR01817       351 FRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEK  386 (534)
T ss_pred             CCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHH
Confidence            778899998  467888887  67888888777654

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.69  E-value=5.9e-08  Score=76.34  Aligned_cols=45  Identities=36%  Similarity=0.482  Sum_probs=34.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++|||.++.+|..-  + .+...  .++|+.|+.||||||++|+||..|.
T Consensus        19 ivGqd~lk~aL~l~--a-v~P~i--ggvLI~G~kGtaKSt~~Rala~LLp   63 (423)
T COG1239          19 IVGQDPLKLALGLN--A-VDPQI--GGALIAGEKGTAKSTLARALADLLP   63 (423)
T ss_pred             hcCchHHHHHHhhh--h-ccccc--ceeEEecCCCccHHHHHHHHHHhCC
Confidence            58999999665543  2 22222  4899999999999999999999883

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.67  E-value=1.8e-07  Score=80.22  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      |+||.|+||||||.+|+.+++...
T Consensus       494 hVLLvGDPGTGKSqLAr~Ih~lsp  517 (915)
T PTZ00111        494 NVLLCGDPGTAKSQLLHYTHLLSP  517 (915)
T ss_pred             eEEEeCCCCccHHHHHHHHHHhCC
Confidence            999999999999999999998654

>KOG2227|consensus

Probab=98.66  E-value=1.7e-07  Score=74.49  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC---eeeeccccc------chhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP---FTSMAGSEI------YSLEMNKT   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~---~~~~~~~~~------~~~~~~~~   71 (174)
                      ++|.|.-.+.+..|...--.++.+ ..+.++|.||||||.+.+.+-..+.+...   -+++++.++      +..-.+.+
T Consensus       152 l~gRe~e~~~v~~F~~~hle~~t~-gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~  230 (529)
T KOG2227|consen  152 LKGRELEMDIVREFFSLHLELNTS-GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL  230 (529)
T ss_pred             ccchHHHHHHHHHHHHhhhhcccC-cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence            356666665555555444444433 68889999999999998877766644322   255665431      11111111


Q ss_pred             h--------h--hhhh---------ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616         72 E--------E--ETEM---------IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI  132 (174)
Q Consensus        72 ~--------~--~~~~---------~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  132 (174)
                      .        +  -.+.         ..=.++.+|+|.+...   .++.+.-  .++....-....+...+|-+-+....+
T Consensus       231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr---~~~vLy~--lFewp~lp~sr~iLiGiANslDlTdR~  305 (529)
T KOG2227|consen  231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITR---SQTVLYT--LFEWPKLPNSRIILIGIANSLDLTDRF  305 (529)
T ss_pred             HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhc---ccceeee--ehhcccCCcceeeeeeehhhhhHHHHH
Confidence            0        0  0000         1113455577766433   2333222  222222223334443344444444667


Q ss_pred             CHHhhcce----eeEecCCCCHHHHHHHHHHHhchhhh
Q psy14616        133 PIDLLDRM----VIIPTQPYQDEEIQAILKIRLVKNER  166 (174)
Q Consensus       133 ~~~l~sR~----~~i~~~~~~~~e~~~il~~~l~~~~~  166 (174)
                      .|.|..|+    +++.|+||+.+++.+|++.++.....
T Consensus       306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t  343 (529)
T KOG2227|consen  306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST  343 (529)
T ss_pred             hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence            88888876    78999999999999999999866543

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=98.64  E-value=6.3e-08  Score=75.41  Aligned_cols=155  Identities=19%  Similarity=0.244  Sum_probs=82.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh--hh---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE--EE---   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~---   74 (174)
                      +||.....+.+......+.   ....+++++|++||||+++|+++-....+ ..+|+.++|..+....+...-  ..   
T Consensus         8 liG~S~~~~~~~~~i~~~a---~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~   84 (326)
T PRK11608          8 LLGEANSFLEVLEQVSRLA---PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA   84 (326)
T ss_pred             cEECCHHHHHHHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccc
Confidence            4666655544333332222   22468999999999999999999876542 367899998865321111100  00   


Q ss_pred             --------h---hhc-cCcEEEEEEeccCCCCCCccce-e-EEE-eccch---hhhccccccchhhhcccCCC------C
Q psy14616         75 --------T---EMI-EGEVVEIQIERPATGLGSKVGK-L-TMK-TTEME---TSYDLGAKMIEAIGTAYSSP------H  130 (174)
Q Consensus        75 --------~---~~~-~~~i~~~~id~~~~~~~~~~~~-~-~~~-~~~~~---~~~~~~~~~~~~i~~~~~~~------~  130 (174)
                              .   +.. .|-++++++|.+ +.   ..|. + .+. +....   ..... +.-+..|++++.+.      .
T Consensus        85 ~~g~~~~~~g~l~~a~gGtL~l~~i~~L-~~---~~Q~~L~~~l~~~~~~~~g~~~~~-~~~~RiI~~s~~~l~~l~~~g  159 (326)
T PRK11608         85 FTGAQKRHPGRFERADGGTLFLDELATA-PM---LVQEKLLRVIEYGELERVGGSQPL-QVNVRLVCATNADLPAMVAEG  159 (326)
T ss_pred             cCCcccccCCchhccCCCeEEeCChhhC-CH---HHHHHHHHHHhcCcEEeCCCCcee-eccEEEEEeCchhHHHHHHcC
Confidence                    0   011 233455566655 22   1111 0 100 00000   00000 01112255553332      4


Q ss_pred             CCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      .+.+.|..|+  ..|.++++.  .+|+..++..++..
T Consensus       160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~  196 (326)
T PRK11608        160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQ  196 (326)
T ss_pred             CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHH
Confidence            5778999999  578899997  57888888776644

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=98.58  E-value=1.1e-07  Score=78.07  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=38.6

Q ss_pred             CCchHHHHHHHHH-HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGV-VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~-~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++|+++++..+-. +..++.......+.++|.||||+|||++|+.||+.+.
T Consensus        78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            4799999977554 4344455444557888999999999999999999873

>PRK12377 putative replication protein; Provisional

Probab=98.58  E-value=1.6e-07  Score=70.21  Aligned_cols=45  Identities=29%  Similarity=0.439  Sum_probs=32.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      |+..+...+..+......+   ..+++|+||||||||++|.++|+.+.
T Consensus        82 ~~~~a~~~a~~~a~~~~~~---~~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377         82 GQRYALSQAKSIADELMTG---CTNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             hHHHHHHHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3444554444444433332   35899999999999999999999883

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.56  E-value=5.9e-07  Score=75.06  Aligned_cols=132  Identities=20%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhhhhcc--------CcEEEEEEecc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EETEMIE--------GEVVEIQIERP   90 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------~~i~~~~id~~   90 (174)
                      .++||.|+||||||++|+++++.++...+|+.+.....-..-.+...       ......+        |.++++|++++
T Consensus        17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl   96 (589)
T TIGR02031        17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL   96 (589)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence            49999999999999999999999876656776653211111111110       0001112        34555566665


Q ss_pred             CCCCCC------ccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce-eeEecCC-CCHHHHHHHHHH
Q psy14616         91 ATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM-VIIPTQP-YQDEEIQAILKI  159 (174)
Q Consensus        91 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~-~~i~~~~-~~~~e~~~il~~  159 (174)
                      ......      +.+.+.+...  ...... +.-|..|+|+ |...   .+++++++|| ..+.+.. ++.++..+|+++
T Consensus        97 ~~~~q~~Ll~al~~g~v~i~r~--G~~~~~-p~~f~lIAt~-np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~  172 (589)
T TIGR02031        97 DDGLSNRLLQALDEGVVIVERE--GISVVH-PAKFALIATY-DPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRR  172 (589)
T ss_pred             CHHHHHHHHHHHHcCCeEEEEC--CCceee-cCceEEEEec-CCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHH
Confidence            221100      1111111100  011111 1223336655 5543   6999999999 4455544 356667788777


Q ss_pred             Hh
Q psy14616        160 RL  161 (174)
Q Consensus       160 ~l  161 (174)
                      .+
T Consensus       173 ~~  174 (589)
T TIGR02031       173 ER  174 (589)
T ss_pred             HH
Confidence            54

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=98.56  E-value=2.2e-07  Score=76.51  Aligned_cols=156  Identities=15%  Similarity=0.209  Sum_probs=84.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT--------   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~--------   71 (174)
                      +||+....+.+......+..   ...+++++|++||||+++|+++.+... ...+|+.++|..+....+...        
T Consensus       189 iig~s~~~~~~~~~i~~~a~---~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~  265 (509)
T PRK05022        189 MIGQSPAMQQLKKEIEVVAA---SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGA  265 (509)
T ss_pred             eeecCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccc
Confidence            46776666444443333322   346999999999999999999998765 335788999876643111100        


Q ss_pred             -----hhh---hhhc-cCcEEEEEEeccCCCCCCccce-e-EE-Eeccchhhhc--cccccchhhhcccCCC------CC
Q psy14616         72 -----EEE---TEMI-EGEVVEIQIERPATGLGSKVGK-L-TM-KTTEMETSYD--LGAKMIEAIGTAYSSP------HG  131 (174)
Q Consensus        72 -----~~~---~~~~-~~~i~~~~id~~~~~~~~~~~~-~-~~-~~~~~~~~~~--~~~~~~~~i~~~~~~~------~~  131 (174)
                           .+.   -+.. .|-+++++||.+ +.   +.|. + .+ .+......-+  ..+.-+..|++++.+.      ..
T Consensus       266 ~~ga~~~~~g~~~~a~gGtL~ldeI~~L-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~  341 (509)
T PRK05022        266 FTGAISNRSGKFELADGGTLFLDEIGEL-PL---ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR  341 (509)
T ss_pred             cCCCcccCCcchhhcCCCEEEecChhhC-CH---HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence                 000   0111 234566677776 22   1221 1 10 0100000000  0001122255553322      34


Q ss_pred             CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      +.+.|..|+  ..|++|++.  .+|+..+++..+.+
T Consensus       342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~  377 (509)
T PRK05022        342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQ  377 (509)
T ss_pred             ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHH
Confidence            788898998  458888887  56777777766644

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=98.55  E-value=2.7e-07  Score=78.61  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=82.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT--------   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~--------   71 (174)
                      ++|+..+.+.+..-...+..   ...+++++|++|||||++|+++..... ...+++.++|..+........        
T Consensus       378 liG~S~~~~~~~~~~~~~a~---~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~  454 (686)
T PRK15429        378 IIGRSEAMYSVLKQVEMVAQ---SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA  454 (686)
T ss_pred             eeecCHHHHHHHHHHHHHhC---CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccccc
Confidence            46666665444333332222   235899999999999999999988764 335788888876532111000        


Q ss_pred             -----hhhh---hh-ccCcEEEEEEeccCCCCCCccce-e-EEE-eccchhhh--ccccccchhhhcccCCC------CC
Q psy14616         72 -----EEET---EM-IEGEVVEIQIERPATGLGSKVGK-L-TMK-TTEMETSY--DLGAKMIEAIGTAYSSP------HG  131 (174)
Q Consensus        72 -----~~~~---~~-~~~~i~~~~id~~~~~~~~~~~~-~-~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~------~~  131 (174)
                           ....   +. ..|-++++++|.+ +.   +.|. + .+. +......-  ...+.-++.|++++.+.      ..
T Consensus       455 ~~g~~~~~~g~le~a~~GtL~Ldei~~L-~~---~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~  530 (686)
T PRK15429        455 FTGASAQRIGRFELADKSSLFLDEVGDM-PL---ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE  530 (686)
T ss_pred             ccccccchhhHHHhcCCCeEEEechhhC-CH---HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCc
Confidence                 0000   11 1344666777776 22   1111 1 100 00000000  00011112255553322      33


Q ss_pred             CCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        132 IPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       132 l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      +.+.+..|+  ..|.+||+.  .+|+..+++.++.+
T Consensus       531 f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~  566 (686)
T PRK15429        531 FRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFK  566 (686)
T ss_pred             ccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHH
Confidence            667788887  568888887  57787777776644

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.54  E-value=1.4e-06  Score=66.18  Aligned_cols=134  Identities=19%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCC-eeeecccccch-hhhhhhhhhh-hh--------ccCcEEEEEEeccCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTP-FTSMAGSEIYS-LEMNKTEEET-EM--------IEGEVVEIQIERPATG   93 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~--------~~~~i~~~~id~~~~~   93 (174)
                      ++++||+||+|||||.+++..-+.+..+.. ...++.+..-. ..+...-+.. +.        ..++-...++|.+..+
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p  112 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP  112 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence            469999999999999999988777754321 12233222111 1111111110 11        1345566788877222


Q ss_pred             CCCc--cce-e-----------EEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcceeeEecCCCCHHHHHHH
Q psy14616         94 LGSK--VGK-L-----------TMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQAI  156 (174)
Q Consensus        94 ~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~~~i~~~~~~~~e~~~i  156 (174)
                      ..+.  .+. +           ++. ........+.+..+  +|+ +++.   ..+++.+++.|.++.++.++++.+..|
T Consensus       113 ~~d~ygtq~~iElLRQ~i~~~g~yd-~~~~~~~~i~~i~~--vaa-~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~I  188 (272)
T PF12775_consen  113 QPDKYGTQPPIELLRQLIDYGGFYD-RKKLEWKSIEDIQF--VAA-MNPTGGRNPISPRFLRHFNILNIPYPSDESLNTI  188 (272)
T ss_dssp             ---TTS--HHHHHHHHHHHCSEEEC-TTTTEEEEECSEEE--EEE-ESSTTT--SHHHHHHTTEEEEE----TCCHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHHHhcCccc-CCCcEEEEEeeeEE--EEe-cCCCCCCCCCChHHhhheEEEEecCCChHHHHHH
Confidence            1111  110 1           111 10011122233333  444 3544   237889999999999999999999988


Q ss_pred             HHHHhc
Q psy14616        157 LKIRLV  162 (174)
Q Consensus       157 l~~~l~  162 (174)
                      ....+.
T Consensus       189 f~~il~  194 (272)
T PF12775_consen  189 FSSILQ  194 (272)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887664

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.54  E-value=1e-07  Score=75.34  Aligned_cols=136  Identities=18%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC--CCCeeeecccccchhhhhh-------------hhhhhhh---ccC-cEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP--DTPFTSMAGSEIYSLEMNK-------------TEEETEM---IEG-EVVEI   85 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~-~i~~~   85 (174)
                      +.++|+.|++||||+.+|+.+...-.+  ..||+.+||+.+...-...             ..+...+   ..| -++.+
T Consensus       101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLD  180 (403)
T COG1221         101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLD  180 (403)
T ss_pred             CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehh
Confidence            579999999999999999999854433  5789999998765421110             0011111   122 34444


Q ss_pred             EEeccCCCCCCccce--eEEEec-cchhhhc--cccccchhhhcccCC-CCCCCH--Hhhcce--eeEecCCCC--HHHH
Q psy14616         86 QIERPATGLGSKVGK--LTMKTT-EMETSYD--LGAKMIEAIGTAYSS-PHGIPI--DLLDRM--VIIPTQPYQ--DEEI  153 (174)
Q Consensus        86 ~id~~~~~~~~~~~~--~~~~~~-~~~~~~~--~~~~~~~~i~~~~~~-~~~l~~--~l~sR~--~~i~~~~~~--~~e~  153 (174)
                      ||.++ +.   +.|.  +.+.+. .....-+  -...-+..+++++.+ ...+..  ++..|+  ..|++|++.  .+|+
T Consensus       181 EI~~L-P~---~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di  256 (403)
T COG1221         181 EIHRL-PP---EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDI  256 (403)
T ss_pred             hhhhC-CH---hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhH
Confidence            66555 22   2222  111111 0010111  011112224444333 355666  788866  678899887  5666


Q ss_pred             HHHHHHHhchh
Q psy14616        154 QAILKIRLVKN  164 (174)
Q Consensus       154 ~~il~~~l~~~  164 (174)
                      ..+++..+...
T Consensus       257 ~~L~e~Fl~~~  267 (403)
T COG1221         257 LLLAEHFLKSE  267 (403)
T ss_pred             HHHHHHHHHHH
Confidence            66666665443

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.53  E-value=2.4e-07  Score=77.63  Aligned_cols=45  Identities=33%  Similarity=0.550  Sum_probs=37.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++||+++++.+....   .++    ++++|+||||||||++++++|+.+++.
T Consensus        20 viG~~~a~~~l~~a~---~~~----~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764        20 VIGQEEAVEIIKKAA---KQK----RNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             ccCHHHHHHHHHHHH---HcC----CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            689999996555444   443    499999999999999999999999765

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=98.51  E-value=2.6e-07  Score=76.16  Aligned_cols=156  Identities=16%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH--------h-CCCCCeeeecccccchhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA--------L-GPDTPFTSMAGSEIYSLEMNKT   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~--------l-~~~~~~~~~~~~~~~~~~~~~~   71 (174)
                      ++|+..+.+.+.........   ...++|++|++||||+++|+++-+.        . ....+|+.++|+.+........
T Consensus       221 iiG~S~~m~~~~~~i~~~A~---s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~llese  297 (538)
T PRK15424        221 LLGQSPQMEQVRQTILLYAR---SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAE  297 (538)
T ss_pred             eeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHH
Confidence            46766666444433322222   2469999999999999999999876        2 3446899999886543111110


Q ss_pred             ---------hh-----hh---hhc-cCcEEEEEEeccCCCCCCccce--eEEE-eccchhhhc--cccccchhhhcccCC
Q psy14616         72 ---------EE-----ET---EMI-EGEVVEIQIERPATGLGSKVGK--LTMK-TTEMETSYD--LGAKMIEAIGTAYSS  128 (174)
Q Consensus        72 ---------~~-----~~---~~~-~~~i~~~~id~~~~~~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~  128 (174)
                               ..     ..   +.. .|-+++++|+.+ +.   +.|.  +.+. +......-.  ..+.-++.|++++.+
T Consensus       298 LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-p~---~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~  373 (538)
T PRK15424        298 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM-PL---PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD  373 (538)
T ss_pred             hcCCccccccCccccccCCchhccCCCEEEEcChHhC-CH---HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC
Confidence                     00     00   111 234666677776 32   2221  1111 100000000  001112225555322


Q ss_pred             C------CCCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        129 P------HGIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       129 ~------~~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      .      ..+.+.|..|+  ..|++||+.  .+|+..+++.++.+
T Consensus       374 L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~  418 (538)
T PRK15424        374 LEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ  418 (538)
T ss_pred             HHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence            2      23556788888  568888887  57888888877754

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.51  E-value=2.8e-07  Score=75.30  Aligned_cols=42  Identities=38%  Similarity=0.640  Sum_probs=32.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++||+.+++.+....       ..+++++|.||||+|||++++.++..+
T Consensus       193 v~Gq~~~~~al~laa-------~~G~~llliG~~GsGKTtLak~L~gll  234 (506)
T PRK09862        193 VIGQEQGKRGLEITA-------AGGHNLLLIGPPGTGKTMLASRINGLL  234 (506)
T ss_pred             EECcHHHHhhhheec-------cCCcEEEEECCCCCcHHHHHHHHhccC
Confidence            357877776654333       245799999999999999999998765

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=98.51  E-value=3.5e-07  Score=64.57  Aligned_cols=62  Identities=19%  Similarity=0.320  Sum_probs=41.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccch
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~   65 (174)
                      +||.+...+.+......+..   .+.++|++|++||||+.+|+++-+...+ ..+|+.++|+.+..
T Consensus         1 liG~s~~m~~~~~~~~~~a~---~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~   63 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAAS---SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE   63 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTT---STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H
T ss_pred             CEeCCHHHHHHHHHHHHHhC---CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc
Confidence            57877777554444433322   3479999999999999999999987653 46899999987643

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK08116 hypothetical protein; Validated

Probab=98.50  E-value=3.1e-07  Score=69.64  Aligned_cols=58  Identities=28%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccc
Q psy14616          7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIY   64 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~   64 (174)
                      +...+..+.+.+......+.+++|+|+||+|||+||.++|+.+.. ..+...++...+.
T Consensus        96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll  154 (268)
T PRK08116         96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL  154 (268)
T ss_pred             HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            443344333333333333357999999999999999999998732 2334455544433

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.50  E-value=3.3e-07  Score=71.28  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccc
Q psy14616          8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIY   64 (174)
Q Consensus         8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~   64 (174)
                      ..++.....++++-.....+++|+||+|||||+|+.++|+++-. ......++...++
T Consensus       166 ~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~  223 (329)
T PRK06835        166 EKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELI  223 (329)
T ss_pred             HHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHH
Confidence            33444444455532222369999999999999999999998722 2234445554443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.49  E-value=2e-07  Score=62.57  Aligned_cols=37  Identities=43%  Similarity=0.777  Sum_probs=29.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCC-Ceeeeccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDT-PFTSMAGS   61 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~-~~~~~~~~   61 (174)
                      +++++|+||||||||++++.+|..+.... ....++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~   39 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE   39 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence            36899999999999999999999997653 34444443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0745|consensus

Probab=98.49  E-value=1.6e-07  Score=74.12  Aligned_cols=64  Identities=23%  Similarity=0.355  Sum_probs=45.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-----ccchhhhhhhh---------hhhhhccCcEEEEEEeccC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-----EIYSLEMNKTE---------EETEMIEGEVVEIQIERPA   91 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-----~~~~~~~~~~~---------~~~~~~~~~i~~~~id~~~   91 (174)
                      .|+||.||+|+|||.+|+-||+.++  +||.-..+.     .+.+.++..+.         +...--.|.|+++|+|++.
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ld--VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~  304 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLD--VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT  304 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhC--CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence            4999999999999999999999998  667655543     33333333322         1122236789999999983

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.46  E-value=4.8e-07  Score=75.83  Aligned_cols=155  Identities=20%  Similarity=0.289  Sum_probs=79.4

Q ss_pred             CCchHHHHHHHHHHH-HHHHh----cC-cC-CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVL-GMIKE----GK-IA-GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~-~~~~~----g~-~~-~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|.+++|+++.-.+ .-+..    |. .. .-|+||.|.||||||.+.+.+++.+.+.+ ++...+++-.++......|
T Consensus       288 IyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v-ytsgkgss~~GLTAav~rd  366 (682)
T COG1241         288 IYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV-YTSGKGSSAAGLTAAVVRD  366 (682)
T ss_pred             ccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE-EEccccccccCceeEEEEc
Confidence            579999997755322 11111    00 11 13999999999999999999998875432 2222222222111111111


Q ss_pred             hh--h----------hccCcEEEEEEeccCCCC------CCccceeEEEeccchhhhccccccchhhhcccCCCCC----
Q psy14616         74 ET--E----------MIEGEVVEIQIERPATGL------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG----  131 (174)
Q Consensus        74 ~~--~----------~~~~~i~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  131 (174)
                      ..  +          ...|.+-++|+|+|....      ..++|.+......+..+.+ +.+.+  +|++ |+...    
T Consensus       367 ~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLn-ARcsv--LAAa-NP~~Gryd~  442 (682)
T COG1241         367 KVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLN-ARCSV--LAAA-NPKFGRYDP  442 (682)
T ss_pred             cCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecc-hhhhh--hhhh-CCCCCcCCC
Confidence            11  1          124556667888772222      2355666555433222222 12222  4555 66532    


Q ss_pred             ---------CCHHhhccee--eEecCCCCHHHHHHHHHHH
Q psy14616        132 ---------IPIDLLDRMV--IIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       132 ---------l~~~l~sR~~--~i~~~~~~~~e~~~il~~~  160 (174)
                               ++++|+|||-  .+-.+.++++.-..+..+.
T Consensus       443 ~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hi  482 (682)
T COG1241         443 KKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHI  482 (682)
T ss_pred             CCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHH
Confidence                     7899999993  3334455544334444443

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.46  E-value=3.6e-07  Score=68.70  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=29.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIY   64 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~   64 (174)
                      +.+++|+||||||||+||-+++.++... .....++..+++
T Consensus       105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~  145 (254)
T COG1484         105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL  145 (254)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            4699999999999999999999988422 233344444443

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.45  E-value=2.3e-07  Score=61.61  Aligned_cols=23  Identities=48%  Similarity=0.953  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +++.||||+||||+|+.||+.+|
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            68999999999999999999997

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.42  E-value=5.4e-07  Score=73.98  Aligned_cols=32  Identities=41%  Similarity=0.598  Sum_probs=26.9

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..+.+.+||+|||||||||+++.||+++|.+
T Consensus        41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~   72 (519)
T PF03215_consen   41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFE   72 (519)
T ss_pred             cCCCcceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            44444678899999999999999999999855

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.42  E-value=2.9e-07  Score=65.46  Aligned_cols=47  Identities=28%  Similarity=0.419  Sum_probs=29.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +||.++..+++..+......  ..++.++++|++|+|||++.+.+.+.+
T Consensus         2 fvgR~~e~~~l~~~l~~~~~--~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen    2 FVGREEEIERLRDLLDAAQS--GSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -TT-HHHHHHHHHTTGGTSS-------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHc--CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            58888888776666652222  234799999999999999999888776

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.42  E-value=1e-07  Score=65.17  Aligned_cols=80  Identities=25%  Similarity=0.384  Sum_probs=45.7

Q ss_pred             CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhhccC
Q psy14616          2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEMIEG   80 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (174)
                      ||...+.+.+..-...+..   ...+++++|++||||+++|+.+...-+.. .+++..++.....    ...  .....|
T Consensus         1 vG~S~~~~~l~~~l~~~a~---~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~----~~l--~~a~~g   71 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAK---SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPA----ELL--EQAKGG   71 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHC---SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCH----HHH--HHCTTS
T ss_pred             CCCCHHHHHHHHHHHHHhC---CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcH----HHH--HHcCCC
Confidence            4555555444433333332   33689999999999999999999876542 3444444443221    111  122455


Q ss_pred             cEEEEEEecc
Q psy14616         81 EVVEIQIERP   90 (174)
Q Consensus        81 ~i~~~~id~~   90 (174)
                      -+++.++|.+
T Consensus        72 tL~l~~i~~L   81 (138)
T PF14532_consen   72 TLYLKNIDRL   81 (138)
T ss_dssp             EEEEECGCCS
T ss_pred             EEEECChHHC
Confidence            6777788887

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.42  E-value=6.3e-07  Score=69.14  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++++|+||+|||||+++.++|+.+
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l  180 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANEL  180 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999999988

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=98.42  E-value=6.1e-07  Score=75.86  Aligned_cols=135  Identities=17%  Similarity=0.232  Sum_probs=74.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhh-----hhhh--h---h---hhhc-cCcEEEEEEec
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEM-----NKTE--E---E---TEMI-EGEVVEIQIER   89 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~-----~~~~--~---~---~~~~-~~~i~~~~id~   89 (174)
                      ..+++|+|++||||+++|+++.+... ...+|+.++|+.+....+     +...  .   .   -+.. .|-+++++|+.
T Consensus       348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~  427 (638)
T PRK11388        348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY  427 (638)
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence            35799999999999999999998775 346899999876643111     1000  0   0   0111 23456667777


Q ss_pred             cCCCCCCccce--eEEE-eccchhhhc--cccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HHHHH
Q psy14616         90 PATGLGSKVGK--LTMK-TTEMETSYD--LGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DEEIQ  154 (174)
Q Consensus        90 ~~~~~~~~~~~--~~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~e~~  154 (174)
                      + +.   ..|.  +.+. +........  ..+.-+..|++++.+.      ..+.+.|.-|+  ..|.+||+.  .+|+.
T Consensus       428 l-~~---~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~  503 (638)
T PRK11388        428 L-SP---ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIP  503 (638)
T ss_pred             C-CH---HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHH
Confidence            6 32   2221  1111 100000000  0011122255553322      34677888888  567788887  46888


Q ss_pred             HHHHHHhch
Q psy14616        155 AILKIRLVK  163 (174)
Q Consensus       155 ~il~~~l~~  163 (174)
                      .+++..+.+
T Consensus       504 ~L~~~~l~~  512 (638)
T PRK11388        504 ALVNNKLRS  512 (638)
T ss_pred             HHHHHHHHH
Confidence            888877654

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=98.41  E-value=1.2e-06  Score=72.45  Aligned_cols=135  Identities=16%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhh-----h--------hhhhh---hc-cCcEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNK-----T--------EEETE---MI-EGEVVEIQ   86 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~-----~--------~~~~~---~~-~~~i~~~~   86 (174)
                      ..+++++|++||||+++|+++-....+ ..+|+.++|..+.......     .        .....   .. .|-+++++
T Consensus       227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde  306 (520)
T PRK10820        227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE  306 (520)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence            358999999999999999998765543 3578889987754311110     0        00001   11 34567778


Q ss_pred             EeccCCCCCCccce-e-EEE-eccchhhhc--cccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HH
Q psy14616         87 IERPATGLGSKVGK-L-TMK-TTEMETSYD--LGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DE  151 (174)
Q Consensus        87 id~~~~~~~~~~~~-~-~~~-~~~~~~~~~--~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~  151 (174)
                      +|.+ +.   ..|. + .+. +......-.  ..+.-+..|+++..+.      ..+.+.|..|+  ..+++||+.  .+
T Consensus       307 I~~L-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~  382 (520)
T PRK10820        307 IGEM-SP---RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQ  382 (520)
T ss_pred             hhhC-CH---HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChh
Confidence            8776 32   1221 1 111 100000000  0011112255553332      33668899998  568888887  45


Q ss_pred             HHHHHHHHHhch
Q psy14616        152 EIQAILKIRLVK  163 (174)
Q Consensus       152 e~~~il~~~l~~  163 (174)
                      ++..+++..+..
T Consensus       383 Di~~L~~~fl~~  394 (520)
T PRK10820        383 DIMPLTELFVAR  394 (520)
T ss_pred             HHHHHHHHHHHH
Confidence            677666665543

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.39  E-value=8.6e-07  Score=66.19  Aligned_cols=39  Identities=23%  Similarity=0.451  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIY   64 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~   64 (174)
                      .+++|+||||||||+++.++|..+... .....++..++.
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~  139 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM  139 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence            589999999999999999999988321 223344444443

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=98.38  E-value=1e-06  Score=72.66  Aligned_cols=156  Identities=18%  Similarity=0.246  Sum_probs=83.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT--------   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~--------   71 (174)
                      ++|+..+.+.+......+..   ...++|++|++||||+++|+++-+... ...+|+.++|+.+........        
T Consensus       214 iiG~S~~m~~~~~~i~~~A~---~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~ga  290 (526)
T TIGR02329       214 LLGASAPMEQVRALVRLYAR---SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGA  290 (526)
T ss_pred             eeeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccc
Confidence            46776666444333322222   236999999999999999999987653 346899999876643211110        


Q ss_pred             -h-----hhh---hhc-cCcEEEEEEeccCCCCCCccce--eEEE-eccchhhh--ccccccchhhhcccCCC------C
Q psy14616         72 -E-----EET---EMI-EGEVVEIQIERPATGLGSKVGK--LTMK-TTEMETSY--DLGAKMIEAIGTAYSSP------H  130 (174)
Q Consensus        72 -~-----~~~---~~~-~~~i~~~~id~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~~~~~~i~~~~~~~------~  130 (174)
                       .     ...   +.. .|-+++++++.+ +.   +.|.  +.+. +.......  ...+.-++.|++++.+.      .
T Consensus       291 ftga~~~~~~Gl~e~A~gGTLfLdeI~~L-p~---~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g  366 (526)
T TIGR02329       291 FTGARRGGRTGLIEAAHRGTLFLDEIGEM-PL---PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQG  366 (526)
T ss_pred             cccccccccccchhhcCCceEEecChHhC-CH---HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhc
Confidence             0     001   111 234566677766 32   1221  1110 10000000  00111122255553332      2


Q ss_pred             CCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      .+.+.|..|+  ..+++||+.  .+|+..++..++.+
T Consensus       367 ~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~  403 (526)
T TIGR02329       367 RFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ  403 (526)
T ss_pred             chhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence            3566777888  578899997  57888888777654

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK08181 transposase; Validated

Probab=98.38  E-value=8.9e-07  Score=67.04  Aligned_cols=25  Identities=44%  Similarity=0.764  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+++|+||||||||++|.++++.+
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a  130 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLAL  130 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHH
Confidence            3689999999999999999999876

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.37  E-value=6.6e-07  Score=75.07  Aligned_cols=45  Identities=31%  Similarity=0.538  Sum_probs=36.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      |+||+++++.+..   ++.++    ++++|+||||+|||++++++++.+++.
T Consensus        33 vigq~~a~~~L~~---~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~   77 (637)
T PRK13765         33 VIGQEHAVEVIKK---AAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKE   77 (637)
T ss_pred             cCChHHHHHHHHH---HHHhC----CeEEEECCCCCcHHHHHHHHHHHcChH
Confidence            6899999966554   34443    489999999999999999999988654

>PF13173 AAA_14: AAA domain

Probab=98.37  E-value=1.2e-06  Score=59.04  Aligned_cols=115  Identities=24%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhh--hhh-hhhhc-c--CcEEEEEEeccCCCCCCccc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNK--TEE-ETEMI-E--GEVVEIQIERPATGLGSKVG   99 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-~--~~i~~~~id~~~~~~~~~~~   99 (174)
                      +.++++||.||||||+++.+++.+........++..+........  ..+ ..+.. +  .-++++|++.+ +..     
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~-~~~-----   76 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL-PDW-----   76 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh-ccH-----
Confidence            578999999999999999999887522223344433222111110  000 01111 1  22445555544 211     


Q ss_pred             eeEEEeccchhhhccc-cccchhhhcccCCC---CCCCHHhhcceeeEecCCCCHHHH
Q psy14616        100 KLTMKTTEMETSYDLG-AKMIEAIGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEI  153 (174)
Q Consensus       100 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~---~~l~~~l~sR~~~i~~~~~~~~e~  153 (174)
                           ...+....+.. +.-+  +.|..+..   ......+.+|...+++.|++-.|.
T Consensus        77 -----~~~lk~l~d~~~~~~i--i~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   77 -----EDALKFLVDNGPNIKI--ILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             -----HHHHHHHHHhccCceE--EEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence                 01111122222 2222  33332222   345678889999999999997664

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.37  E-value=4.5e-07  Score=69.02  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=41.1

Q ss_pred             CchHHHHHHHHHHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          2 VGQLQARRAAGVVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ||+..++++++.+.+.+...+.. ..++|++|++|.|||++++.+++.-
T Consensus        37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence            78899999999999888765443 3699999999999999999999865

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG1514|consensus

Probab=98.34  E-value=1.2e-06  Score=72.82  Aligned_cols=154  Identities=20%  Similarity=0.220  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC--------CCCCeeeecccccchhhh--hhhh---
Q psy14616          6 QARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG--------PDTPFTSMAGSEIYSLEM--NKTE---   72 (174)
Q Consensus         6 ~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~--------~~~~~~~~~~~~~~~~~~--~~~~---   72 (174)
                      .-...|..+.+..-..+..+.-+.++|-||||||.+++.+-+.|-        ..+.|+.+|+-.+.+..-  ..+.   
T Consensus       403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~l  482 (767)
T KOG1514|consen  403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEAL  482 (767)
T ss_pred             HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhc
Confidence            333344444433322222334788999999999999998887652        235567777654433110  0000   


Q ss_pred             -------hh-------------hhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616         73 -------EE-------------TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI  132 (174)
Q Consensus        73 -------~~-------------~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  132 (174)
                             +.             ....+..++++|+|.+.+..++   .+.  ..+-.....-++.++.+|+-|++-+..+
T Consensus       483 sg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd---VlY--n~fdWpt~~~sKLvvi~IaNTmdlPEr~  557 (767)
T KOG1514|consen  483 SGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD---VLY--NIFDWPTLKNSKLVVIAIANTMDLPERL  557 (767)
T ss_pred             ccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH---HHH--HHhcCCcCCCCceEEEEecccccCHHHH
Confidence                   00             0011224666788777554211   110  0011112222344454466666665443


Q ss_pred             -CHHhhcce--eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        133 -PIDLLDRM--VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       133 -~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       ..-+-||+  ..+.|.+|+.+++.+|+..+|...
T Consensus       558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~  592 (767)
T KOG1514|consen  558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL  592 (767)
T ss_pred             hccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence             45677898  789999999999999999988655

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.29  E-value=1.2e-06  Score=61.83  Aligned_cols=27  Identities=44%  Similarity=0.597  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|+||||+|||++|+.+|+.++.
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~   30 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGY   30 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            468999999999999999999999984

>PRK06921 hypothetical protein; Provisional

Probab=98.28  E-value=1.8e-06  Score=65.42  Aligned_cols=26  Identities=42%  Similarity=0.594  Sum_probs=23.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++|+||||+|||+|+.++|+++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence            46899999999999999999999874

>KOG0480|consensus

Probab=98.28  E-value=4.5e-06  Score=68.83  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             CCchHHHHHHHHHHH-HHHH--hc-CcC---CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVL-GMIK--EG-KIA---GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~-~~~~--~g-~~~---~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|.|.+|.-+-..+ .-+.  .+ ..+   .-|+++.|.||+||+-+.++.+..+.+. .++.-+.++-.++...-+.|
T Consensus       347 IyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~-vYtsGkaSSaAGLTaaVvkD  425 (764)
T KOG0480|consen  347 IYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS-VYTSGKASSAAGLTAAVVKD  425 (764)
T ss_pred             ccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc-eEecCcccccccceEEEEec
Confidence            578888885433211 0000  00 111   2499999999999999999999877543 23333332222222221111


Q ss_pred             h--------hhh----ccCcEEEEEEeccCCCC------CCccceeEEEeccchhhhccccccchhhhcccCCCCC----
Q psy14616         74 E--------TEM----IEGEVVEIQIERPATGL------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG----  131 (174)
Q Consensus        74 ~--------~~~----~~~~i~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  131 (174)
                      .        +..    ..|..-++|+|+|..+.      ..++|.++........+.+....+   +|++ |+...    
T Consensus       426 ~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSI---lAAA-NPv~GhYdR  501 (764)
T KOG0480|consen  426 EESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSI---LAAA-NPVGGHYDR  501 (764)
T ss_pred             CCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhh---hhhc-CCcCCcccc
Confidence            1        111    13455666888884322      235566655544433333332222   4555 55522    


Q ss_pred             ---------CCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616        132 ---------IPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       132 ---------l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~  162 (174)
                               +.++++|||  ..|-++.+++..-+.+.++.+.
T Consensus       502 ~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld  543 (764)
T KOG0480|consen  502 KKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILD  543 (764)
T ss_pred             ccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHH
Confidence                     679999999  5566788887777777776553

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=98.27  E-value=4.3e-06  Score=61.81  Aligned_cols=139  Identities=12%  Similarity=0.026  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCC-CcHHHHHHHHHHHhCCCC------C-eeeeccc-------ccch-hhhhhhhhh
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPG-TGKTAIAMGLAQALGPDT------P-FTSMAGS-------EIYS-LEMNKTEEE   74 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG-~GKT~la~~la~~l~~~~------~-~~~~~~~-------~~~~-~~~~~~~~~   74 (174)
                      +..+...+++++.. +.+||.|..+ ++|..++..+++.+.+..      | +..+...       ..++ ..+.+....
T Consensus         2 ~~~L~~~iq~~kLs-hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~   80 (263)
T PRK06581          2 IERLEFNLKHNKLY-NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDF   80 (263)
T ss_pred             hHHHHHHHHcCcch-heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHH
Confidence            35677888999987 9999999998 999999999998885431      1 1112111       0111 111111111


Q ss_pred             hhhc----cCcE-EEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         75 TEMI----EGEV-VEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        75 ~~~~----~~~i-~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                      ....    ..+| ++...|++ +.   +..+..++.      .+.+  ++.|  +..+ ..+..+.|+++|||+.+.+..
T Consensus        81 l~~~p~~g~~KViII~~ae~m-t~---~AANALLKt------LEEPP~~t~f--ILit-~~~~~LLpTIrSRCq~i~~~~  147 (263)
T PRK06581         81 LSKTSAISGYKVAIIYSAELM-NL---NAANSCLKI------LEDAPKNSYI--FLIT-SRAASIISTIRSRCFKINVRS  147 (263)
T ss_pred             HhhCcccCCcEEEEEechHHh-CH---HHHHHHHHh------hcCCCCCeEE--EEEe-CChhhCchhHhhceEEEeCCC
Confidence            1111    1133 33355555 22   222222221      1122  2333  3334 467889999999999999999


Q ss_pred             CCHHHHHHHHHHHhch
Q psy14616        148 YQDEEIQAILKIRLVK  163 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~  163 (174)
                      ++.....++....+.+
T Consensus       148 p~~~~~~e~~~~~~~p  163 (263)
T PRK06581        148 SILHAYNELYSQFIQP  163 (263)
T ss_pred             CCHHHHHHHHHHhccc
Confidence            9887777766665544

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.27  E-value=3e-06  Score=57.35  Aligned_cols=30  Identities=43%  Similarity=0.665  Sum_probs=26.3

Q ss_pred             cCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         23 IAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++..++|.|+.|+||||+++.+++.++..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            345688999999999999999999999854

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.27  E-value=8.2e-07  Score=63.31  Aligned_cols=25  Identities=44%  Similarity=0.809  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+++|+||||||||++|.++++++
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~   71 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEA   71 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHh
Confidence            4699999999999999999999876

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.26  E-value=3.9e-06  Score=75.87  Aligned_cols=131  Identities=22%  Similarity=0.442  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc------cchhhhhhhh-------hh---hhhccCc-EEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE------IYSLEMNKTE-------EE---TEMIEGE-VVEIQI   87 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~------~~~~~~~~~~-------~~---~~~~~~~-i~~~~i   87 (174)
                      +++++|-|.||+|||++..++|+..|..  +++++-++      +++.+...-+       +.   +....|. |+.+|+
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~tG~k--liRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEi 1620 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKTGKK--LIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEI 1620 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHhcCc--eEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehh
Confidence            3689999999999999999999999865  55555321      1111111100       00   1112232 444444


Q ss_pred             eccCCCCCCccc-e--eEEE-ecc---chhhhccccccchhhhcccCCC------CCCCHHhhcceeeEecCCCCHHHHH
Q psy14616         88 ERPATGLGSKVG-K--LTMK-TTE---METSYDLGAKMIEAIGTAYSSP------HGIPIDLLDRMVIIPTQPYQDEEIQ  154 (174)
Q Consensus        88 d~~~~~~~~~~~-~--~~~~-~~~---~~~~~~~~~~~~~~i~~~~~~~------~~l~~~l~sR~~~i~~~~~~~~e~~  154 (174)
                      .-+ +.. .-++ +  +.-+ ..+   ++.+++..+. |..+|+. |+.      ..+|..++.||-++.++.++.+++.
T Consensus      1621 NLa-SQS-VlEGLNacLDhR~eayIPEld~~f~~Hpn-frVFAaq-NPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~ 1696 (4600)
T COG5271        1621 NLA-SQS-VLEGLNACLDHRREAYIPELDKTFDVHPN-FRVFAAQ-NPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDIT 1696 (4600)
T ss_pred             hhh-HHH-HHHHHHHHHhhccccccccccceeeccCC-eeeeeec-CchhcCCCcccCCHHHhhhhheEEecccccchHH
Confidence            322 110 0000 0  0000 111   1222232222 2225555 555      3399999999999999999999999


Q ss_pred             HHHHHHh
Q psy14616        155 AILKIRL  161 (174)
Q Consensus       155 ~il~~~l  161 (174)
                      .|+....
T Consensus      1697 ~Ia~~~y 1703 (4600)
T COG5271        1697 HIANKMY 1703 (4600)
T ss_pred             HHHHhhC
Confidence            8887643

>PRK08118 topology modulation protein; Reviewed

Probab=98.25  E-value=1.4e-06  Score=61.55  Aligned_cols=27  Identities=33%  Similarity=0.580  Sum_probs=24.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.+++.||||+||||+|+.|++.++..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~   28 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIP   28 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            468999999999999999999999854

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.25  E-value=9.4e-07  Score=60.34  Aligned_cols=23  Identities=52%  Similarity=0.956  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++++||||+||||+|+.+++.++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            78999999999999999999987

...

>PRK06526 transposase; Provisional

Probab=98.23  E-value=1.1e-06  Score=66.18  Aligned_cols=25  Identities=40%  Similarity=0.725  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+++|+||||||||++|.+++.++
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHH
Confidence            3699999999999999999999876

>KOG0478|consensus

Probab=98.23  E-value=2.5e-06  Score=70.79  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             CCchHHHHHHHHH-HH-----HHHHhcCcCC-ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGV-VL-----GMIKEGKIAG-RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~-~~-----~~~~~g~~~~-~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      |+|.|++|+.+-- +.     +.-+.|+..+ -|+||+|.||||||-+.+.+++.+.+.
T Consensus       431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg  489 (804)
T KOG0478|consen  431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG  489 (804)
T ss_pred             hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc
Confidence            5788888855332 11     1111222221 499999999999999999999887543

>PRK14532 adenylate kinase; Provisional

Probab=98.22  E-value=1.5e-06  Score=62.39  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=28.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL   66 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~   66 (174)
                      ++++.||||+||||+|+.+|+.+|.    ..++.++++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~----~~is~~d~lr~   37 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGM----VQLSTGDMLRA   37 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC----eEEeCcHHHHH
Confidence            5899999999999999999999983    34555555543

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.22  E-value=1.4e-06  Score=62.07  Aligned_cols=34  Identities=24%  Similarity=0.642  Sum_probs=27.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +++.||||+||||+|+.+|+.+|    +..++.++++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~----~~~is~~d~lr   35 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG----FTHLSAGDLLR   35 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC----CeEEECChHHH
Confidence            68999999999999999999997    33455555544

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14531 adenylate kinase; Provisional

Probab=98.21  E-value=1.7e-06  Score=61.89  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +.+++.||||+||||+++.+|+.+|..    .++.++++.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~----~is~gd~lr   38 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLR----HLSTGDLLR   38 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCC----eEecccHHH
Confidence            478999999999999999999999833    445555554

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.20  E-value=5.4e-06  Score=67.63  Aligned_cols=135  Identities=18%  Similarity=0.200  Sum_probs=74.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh--hh-----------h----hhccCcEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE--EE-----------T----EMIEGEVVEIQ   86 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~-----------~----~~~~~~i~~~~   86 (174)
                      ..++++.|++|||||++|+++.+...+ ..+|+.++++.+........-  ..           .    ....|-+++++
T Consensus       161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~  240 (469)
T PRK10923        161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE  240 (469)
T ss_pred             CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence            458999999999999999999987653 357888888765321111000  00           0    00134466667


Q ss_pred             EeccCCCCCCccce--eEEE-eccchhhhcc--ccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HH
Q psy14616         87 IERPATGLGSKVGK--LTMK-TTEMETSYDL--GAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DE  151 (174)
Q Consensus        87 id~~~~~~~~~~~~--~~~~-~~~~~~~~~~--~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~  151 (174)
                      +|.+ +.   +.|.  +.+. +.......+.  ...-++.|++++.+.      ..+.+.|..|+  ..|.++|+.  .+
T Consensus       241 i~~l-~~---~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~  316 (469)
T PRK10923        241 IGDM-PL---DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERRE  316 (469)
T ss_pred             cccC-CH---HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchh
Confidence            7665 22   1111  0100 0000000000  001112255553332      34778999999  578888887  57


Q ss_pred             HHHHHHHHHhch
Q psy14616        152 EIQAILKIRLVK  163 (174)
Q Consensus       152 e~~~il~~~l~~  163 (174)
                      ++..+++.++.+
T Consensus       317 Di~~l~~~~l~~  328 (469)
T PRK10923        317 DIPRLARHFLQV  328 (469)
T ss_pred             hHHHHHHHHHHH
Confidence            888888777644

>KOG3347|consensus

Probab=98.19  E-value=1.9e-06  Score=58.86  Aligned_cols=26  Identities=46%  Similarity=0.735  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|++|-|||||||++..+|..+|.
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~   33 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGL   33 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCC
Confidence            49999999999999999999999883

>PRK00625 shikimate kinase; Provisional

Probab=98.18  E-value=2.3e-06  Score=60.75  Aligned_cols=26  Identities=38%  Similarity=0.549  Sum_probs=23.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +++|.|+||+||||+++.+|+.++..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~   27 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLP   27 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            68999999999999999999999843

>PRK03839 putative kinase; Provisional

Probab=98.17  E-value=2.3e-06  Score=60.92  Aligned_cols=25  Identities=44%  Similarity=0.703  Sum_probs=23.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.|+||+||||+++.+|+.++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~   26 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGY   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4889999999999999999999984

>PRK13947 shikimate kinase; Provisional

Probab=98.17  E-value=2.6e-06  Score=60.08  Aligned_cols=27  Identities=37%  Similarity=0.516  Sum_probs=24.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++++.|+||+|||++++.+|+.+|..
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~   28 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFG   28 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            379999999999999999999999854

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.15  E-value=1.8e-06  Score=56.43  Aligned_cols=23  Identities=43%  Similarity=0.667  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.|+||||+|||++|+.||+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999998874

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.13  E-value=2.2e-06  Score=59.33  Aligned_cols=34  Identities=38%  Similarity=0.686  Sum_probs=26.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      .+.+.||||+||||+|+-+|+.+|.+    .++++.++
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~vsaG~iF   35 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLK----LVSAGTIF   35 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCc----eeeccHHH
Confidence            36689999999999999999999944    34444444

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=98.13  E-value=7e-06  Score=66.50  Aligned_cols=134  Identities=18%  Similarity=0.221  Sum_probs=73.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhh-------------hhhh---h-hccCcEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKT-------------EEET---E-MIEGEVVEIQ   86 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~---~-~~~~~i~~~~   86 (174)
                      ..+++++|++||||+++|+++...... ..+|+.++|..+....+...             ....   + ...|-+++++
T Consensus       162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~  241 (445)
T TIGR02915       162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE  241 (445)
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence            368999999999999999999887653 35788888876533211110             0000   0 1124456667


Q ss_pred             EeccCCCCCCccce-e-EEE-eccc---hhhhccccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--H
Q psy14616         87 IERPATGLGSKVGK-L-TMK-TTEM---ETSYDLGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--D  150 (174)
Q Consensus        87 id~~~~~~~~~~~~-~-~~~-~~~~---~~~~~~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~  150 (174)
                      +|.+ +.   ..|. + .+. +...   ...... +.-+..|++++.+.      ..+.+.|..|+  ..|.+|++.  .
T Consensus       242 i~~l-~~---~~q~~l~~~l~~~~~~~~~~~~~~-~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~  316 (445)
T TIGR02915       242 IGDL-PL---NLQAKLLRFLQERVIERLGGREEI-PVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRD  316 (445)
T ss_pred             hhhC-CH---HHHHHHHHHHhhCeEEeCCCCcee-eeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhch
Confidence            7766 32   1111 1 100 0000   000000 11122255553332      34678888898  567888887  5


Q ss_pred             HHHHHHHHHHhch
Q psy14616        151 EEIQAILKIRLVK  163 (174)
Q Consensus       151 ~e~~~il~~~l~~  163 (174)
                      +++..+++.++..
T Consensus       317 ~Di~~l~~~~l~~  329 (445)
T TIGR02915       317 GDAVLLANAFLER  329 (445)
T ss_pred             hhHHHHHHHHHHH
Confidence            6777777766544

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK14530 adenylate kinase; Provisional

Probab=98.12  E-value=3.3e-06  Score=61.96  Aligned_cols=26  Identities=42%  Similarity=0.678  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.||||+||||+++.||+.+|.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~   29 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGV   29 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47999999999999999999999983

>KOG1970|consensus

Probab=98.10  E-value=5.3e-06  Score=67.43  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=27.6

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ...+..+.+||+||+||||||+++.|++++|..
T Consensus       105 ~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~  137 (634)
T KOG1970|consen  105 TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ  137 (634)
T ss_pred             ccCCCceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence            344455688899999999999999999999854

>KOG0741|consensus

Probab=98.09  E-value=2.9e-06  Score=68.79  Aligned_cols=37  Identities=35%  Similarity=0.571  Sum_probs=29.9

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA   59 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~   59 (174)
                      .+.+-..+||.||||+|||+||-.+|...+  +||+.+-
T Consensus       534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPFvKii  570 (744)
T KOG0741|consen  534 ERSPLVSVLLEGPPGSGKTALAAKIALSSD--FPFVKII  570 (744)
T ss_pred             ccCcceEEEEecCCCCChHHHHHHHHhhcC--CCeEEEe
Confidence            344456899999999999999999998776  7787643

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.09  E-value=3.7e-06  Score=59.09  Aligned_cols=27  Identities=41%  Similarity=0.528  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+++|.|++|+||||+.+++|+.|+..
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~   29 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLP   29 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence            589999999999999999999999844

>PLN02674 adenylate kinase

Probab=98.09  E-value=9.7e-06  Score=60.49  Aligned_cols=39  Identities=18%  Similarity=0.391  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE   67 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~   67 (174)
                      ...++|.||||+||||.|+.||+.+|    +..++.++++...
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~----~~his~GdllR~~   69 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC----LCHLATGDMLRAA   69 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC----CcEEchhHHHHHH
Confidence            36799999999999999999999998    3456666666544

>PRK13949 shikimate kinase; Provisional

Probab=98.08  E-value=4.6e-06  Score=58.97  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.++|.||||+||||+++.+|+.++..
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~   28 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLS   28 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            478999999999999999999999843

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.08  E-value=3.5e-06  Score=56.24  Aligned_cols=22  Identities=55%  Similarity=0.795  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      +++.|+||+||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999997

...

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.08  E-value=4.9e-06  Score=57.49  Aligned_cols=26  Identities=46%  Similarity=0.608  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +++|+|+||+|||++|+.+|+.++..
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~   26 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLP   26 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            47899999999999999999999743

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=98.08  E-value=8.6e-05  Score=60.03  Aligned_cols=62  Identities=24%  Similarity=0.416  Sum_probs=47.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccch
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~   65 (174)
                      +||+..+.+.+......+..   ..-++|++|++||||..+|+++-+.-.+ +.||+.+||+.+..
T Consensus       143 liG~S~am~~l~~~i~kvA~---s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~  205 (464)
T COG2204         143 LVGESPAMQQLRRLIAKVAP---SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE  205 (464)
T ss_pred             ceecCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence            47777777666666554443   2358999999999999999999887754 35899999887643

>PLN02200 adenylate kinase family protein

Probab=98.06  E-value=4.9e-06  Score=61.86  Aligned_cols=37  Identities=16%  Similarity=0.384  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +..+++.||||+||||+|+.+|+.+|.    ..++.++++.
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g~----~his~gdllR   79 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFGF----KHLSAGDLLR   79 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCC----eEEEccHHHH
Confidence            357889999999999999999999983    3566666654

>PRK09183 transposase/IS protein; Provisional

Probab=98.05  E-value=4.1e-06  Score=63.26  Aligned_cols=25  Identities=36%  Similarity=0.585  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+++|+||||||||+++.+++..+
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998765

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.04  E-value=5.8e-06  Score=61.25  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      ..++|.||||+||||+|+.+|+.+|.    ..++.++++.
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~----~~is~gdllr   42 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENL----KHINMGNILR   42 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC----cEEECChHHH
Confidence            46899999999999999999999983    3455555554

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.03  E-value=5.7e-06  Score=59.40  Aligned_cols=24  Identities=50%  Similarity=0.715  Sum_probs=22.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +++.||||+||||+|+.||+.+|.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~   25 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGL   25 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            789999999999999999999873

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.03  E-value=9.2e-06  Score=59.56  Aligned_cols=44  Identities=25%  Similarity=0.443  Sum_probs=31.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++|.+.-.+.|   .+.+.++.  .+.++++||.|+|||++++.+.+.+
T Consensus         1 F~gR~~el~~l---~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen    1 FFGREKELEKL---KELLESGP--SQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             S-S-HHHHHHH---HHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHH---HHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            46777666444   44455543  3699999999999999999999988

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.03  E-value=5.8e-06  Score=58.92  Aligned_cols=35  Identities=37%  Similarity=0.696  Sum_probs=27.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .+++.||||+||||+|+.||+.++    +..++.++++.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~----i~hlstgd~~r   36 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG----LPHLDTGDILR   36 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC----CcEEcHhHHhH
Confidence            588999999999999999999976    34555554443

>PRK06762 hypothetical protein; Provisional

Probab=98.02  E-value=6.8e-06  Score=57.72  Aligned_cols=26  Identities=42%  Similarity=0.704  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++++|+||+||||+|+.+++.++.
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~   28 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGR   28 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            56889999999999999999999853

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.02  E-value=6.4e-06  Score=58.46  Aligned_cols=27  Identities=41%  Similarity=0.663  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++.++|.||||+||||+|+.+++.++.
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~   28 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAE   28 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            457899999999999999999998864

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.01  E-value=4.7e-06  Score=59.49  Aligned_cols=26  Identities=27%  Similarity=0.563  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.||||+||||+++.+++.+|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~   29 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGF   29 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36889999999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14528 adenylate kinase; Provisional

Probab=98.01  E-value=6.9e-06  Score=58.96  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.+++.||||+||||+++.+|+.+|.
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~   27 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSI   27 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999999874

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.00  E-value=7.2e-06  Score=60.15  Aligned_cols=35  Identities=26%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .+++.||||+||||+|+.+|+.+|.    ..++.++++.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~----~~is~~dl~r   36 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGI----PHISTGDMLR   36 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC----cEEECCccHH
Confidence            4889999999999999999999983    3445544443

>PF13245 AAA_19: Part of AAA domain

Probab=98.00  E-value=8.5e-06  Score=49.84  Aligned_cols=24  Identities=42%  Similarity=0.668  Sum_probs=17.0

Q ss_pred             ceEEEEcCCCCcHHHH-HHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAI-AMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~l-a~~la~~l   49 (174)
                      +.+++.||||+|||++ +..+++.+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566799999999954 45555444

>PRK07261 topology modulation protein; Provisional

Probab=98.00  E-value=8.4e-06  Score=57.73  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+++.|+||+||||+|+.+++.++.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~   26 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC   26 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998874

>KOG2170|consensus

Probab=98.00  E-value=1.6e-05  Score=60.38  Aligned_cols=49  Identities=22%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             CCchHHHHHHHH-HHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAG-VVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~-~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.||--+++.+- .+...+.++... |..+=|+|++||||+++++.+|+.+
T Consensus        84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~  134 (344)
T KOG2170|consen   84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL  134 (344)
T ss_pred             hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence            468888885533 344444455422 2234479999999999999999987

>TIGR01351 adk adenylate kinases

Probab=97.99  E-value=6.2e-06  Score=60.28  Aligned_cols=34  Identities=26%  Similarity=0.548  Sum_probs=27.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +++.||||+||||+|+.||+.+|.    ..++.++++.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~----~~is~gdllr   35 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGL----PHISTGDLLR   35 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC----CeeehhHHHH
Confidence            789999999999999999999873    3445555443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.99  E-value=6.6e-06  Score=56.77  Aligned_cols=24  Identities=38%  Similarity=0.743  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++|+|+||+||||+|+.+++.++.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~   25 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGA   25 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCC
Confidence            689999999999999999999863

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK06217 hypothetical protein; Validated

Probab=97.99  E-value=9.5e-06  Score=58.02  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=23.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+++.|+||+||||+|+.|++.+|..
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~   28 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIP   28 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            68999999999999999999999843

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.98  E-value=5.5e-06  Score=57.99  Aligned_cols=23  Identities=48%  Similarity=0.791  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +++.||||+||||+|+.+++.++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            47899999999999999999987

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.97  E-value=9.1e-06  Score=48.73  Aligned_cols=22  Identities=41%  Similarity=0.714  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+.|+||+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999997

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.97  E-value=9.9e-06  Score=55.41  Aligned_cols=25  Identities=40%  Similarity=0.624  Sum_probs=22.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.+.|+||+||||+|+.||+.+|..
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~   26 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLP   26 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            6789999999999999999999843

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.97  E-value=2.6e-05  Score=60.42  Aligned_cols=28  Identities=39%  Similarity=0.526  Sum_probs=25.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..++|.|+||+|||++++.+|+.+|..
T Consensus       133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~  160 (309)
T PRK08154        133 RRRIALIGLRGAGKSTLGRMLAARLGVP  160 (309)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999854

>PRK14527 adenylate kinase; Provisional

Probab=97.96  E-value=7.6e-06  Score=58.92  Aligned_cols=27  Identities=41%  Similarity=0.683  Sum_probs=24.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+++.||||+||||+|+.+|+.++.
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~~~~~   32 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQELGL   32 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            467999999999999999999999874

>PRK13948 shikimate kinase; Provisional

Probab=97.95  E-value=1.5e-05  Score=56.96  Aligned_cols=29  Identities=38%  Similarity=0.383  Sum_probs=26.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++.+++|.|++|+||||+++.+|+.++..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~   37 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLH   37 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            34799999999999999999999999844

>PRK04040 adenylate kinase; Provisional

Probab=97.94  E-value=1.3e-05  Score=57.58  Aligned_cols=25  Identities=28%  Similarity=0.570  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++++|+||+||||+++.+++.+.
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            5788999999999999999999994

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.94  E-value=2.5e-05  Score=58.95  Aligned_cols=29  Identities=24%  Similarity=0.311  Sum_probs=24.8

Q ss_pred             HHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ..+.+|+ ..+++++++.+|+.+++...+.
T Consensus       177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~  206 (269)
T TIGR03015       177 QQLRQRIIASCHLGPLDREETREYIEHRLE  206 (269)
T ss_pred             HHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence            4678887 7899999999999999988764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.93  E-value=9.3e-06  Score=56.87  Aligned_cols=25  Identities=40%  Similarity=0.639  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++++|.|||||||+++.|+ .+|.+
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~   26 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYK   26 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCc
Confidence            57899999999999999999 88744

>PRK02496 adk adenylate kinase; Provisional

Probab=97.93  E-value=9.1e-06  Score=58.09  Aligned_cols=25  Identities=36%  Similarity=0.566  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+++.||||+||||+++.+|+.+|.
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~   27 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHI   27 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999999874

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=97.92  E-value=3.6e-05  Score=62.56  Aligned_cols=40  Identities=25%  Similarity=0.441  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIY   64 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~   64 (174)
                      ..++++.|++||||+++|+++..... ...+|+.+++..+.
T Consensus       166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~  206 (457)
T PRK11361        166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP  206 (457)
T ss_pred             CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence            46899999999999999999987654 33578888877653

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=97.92  E-value=0.00012  Score=59.11  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=47.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccc
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIY   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~   64 (174)
                      |||+..+...+-...+.+..   ....+|+.|.+||||..+|+++-+..++. -+|+.+||+.+.
T Consensus       225 iIG~S~am~~ll~~i~~VA~---Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP  286 (550)
T COG3604         225 IIGRSPAMRQLLKEIEVVAK---SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP  286 (550)
T ss_pred             ceecCHHHHHHHHHHHHHhc---CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence            68888888665555555543   33689999999999999999999887554 578999987654

>PRK13946 shikimate kinase; Provisional

Probab=97.92  E-value=1.4e-05  Score=57.16  Aligned_cols=28  Identities=36%  Similarity=0.585  Sum_probs=25.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ...++|.|++|+||||+++.+|+.+|..
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~   37 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLP   37 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999854

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.92  E-value=1.4e-05  Score=58.56  Aligned_cols=23  Identities=39%  Similarity=0.648  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++.||||||||+++..++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            38899999999998766666655

>PRK06547 hypothetical protein; Provisional

Probab=97.91  E-value=2.8e-05  Score=55.17  Aligned_cols=27  Identities=37%  Similarity=0.533  Sum_probs=24.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+++.|++|+||||+|+.+++.++.
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~   41 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTGF   41 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            367888999999999999999999873

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.91  E-value=9.2e-06  Score=56.22  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=28.3

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh
Q psy14616         30 LAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM   68 (174)
Q Consensus        30 l~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~   68 (174)
                      +.||||+||||+|+.||+.+|    +..++.+++....+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~----~~~is~~~llr~~~   35 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG----LVHISVGDLLREEI   35 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT----SEEEEHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcC----cceechHHHHHHHH
Confidence            579999999999999999997    45677666665444

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.91  E-value=8.6e-05  Score=55.11  Aligned_cols=119  Identities=22%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccC------cEEEEEEeccCCCC----C
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEG------EVVEIQIERPATGL----G   95 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~id~~~~~~----~   95 (174)
                      ..-.++||+|||||++++.+|+.+|+.  .+.++++.-....     ...+++.|      =..+++++++....    .
T Consensus        33 ~~~~~~GpagtGKtetik~La~~lG~~--~~vfnc~~~~~~~-----~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~  105 (231)
T PF12774_consen   33 LGGALSGPAGTGKTETIKDLARALGRF--VVVFNCSEQMDYQ-----SLSRILKGLAQSGAWLCFDEFNRLSEEVLSVIS  105 (231)
T ss_dssp             TEEEEESSTTSSHHHHHHHHHHCTT----EEEEETTSSS-HH-----HHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHH
T ss_pred             CCCCCcCCCCCCchhHHHHHHHHhCCe--EEEecccccccHH-----HHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHH
Confidence            466789999999999999999999954  6677776543311     11122222      13444555441000    0


Q ss_pred             -----------CccceeEEEeccchhhhcccc-ccchhhhcccCCC----CCCCHHhhcceeeEecCCCCHHHHHHHHH
Q psy14616         96 -----------SKVGKLTMKTTEMETSYDLGA-KMIEAIGTAYSSP----HGIPIDLLDRMVIIPTQPYQDEEIQAILK  158 (174)
Q Consensus        96 -----------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----~~l~~~l~sR~~~i~~~~~~~~e~~~il~  158 (174)
                                 .....+.+.    .....+.+ ..+  ++|. |+.    ..+|+.++.-|+.+.+..|+-..+.+++-
T Consensus       106 ~~i~~i~~al~~~~~~~~~~----g~~i~l~~~~~i--FiT~-np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L  177 (231)
T PF12774_consen  106 QQIQSIQDALRAKQKSFTLE----GQEIKLNPNCGI--FITM-NPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILL  177 (231)
T ss_dssp             HHHHHHHHHHHCTSSEEEET----TCEEE--TT-EE--EEEE--B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccccC----CCEEEEccceeE--EEee-ccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHH
Confidence                       001111111    11112211 112  2333 433    56899999999999998888777766654

>PRK06696 uridine kinase; Validated

Probab=97.91  E-value=4.4e-05  Score=56.35  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.|++|+||||+|+.|++.|+
T Consensus        22 ~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         22 PLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35777899999999999999999993

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.91  E-value=2.6e-05  Score=61.54  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=24.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +++++.|+||+|+|||+|.-.+...+..
T Consensus        61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence            4789999999999999999998887743

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK14526 adenylate kinase; Provisional

Probab=97.91  E-value=1.3e-05  Score=58.70  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=26.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      .++|.||||+||||+++.+|+.++.    ..++.++++
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~----~~is~G~ll   35 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNY----YHISTGDLF   35 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC----ceeecChHH
Confidence            4789999999999999999998873    234444444

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.91  E-value=2.3e-05  Score=52.37  Aligned_cols=29  Identities=55%  Similarity=0.851  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++..++|.|+=|.||||+++.+++.+|.+
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            45689999999999999999999999865

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PHA02624 large T antigen; Provisional

Probab=97.89  E-value=2.9e-05  Score=64.42  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .|....+.++|+||||||||+++.+|++.++
T Consensus       426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~  456 (647)
T PHA02624        426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCG  456 (647)
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3544456888999999999999999999995

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.89  E-value=1e-05  Score=58.40  Aligned_cols=23  Identities=52%  Similarity=0.823  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -++|+|+||+||||+|+.||+.|
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L   25 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKEL   25 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHH
Confidence            68899999999999999999988

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.89  E-value=2e-05  Score=55.60  Aligned_cols=27  Identities=48%  Similarity=0.769  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+++|.|++|+||||+++.+|+.+|..
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~   29 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYR   29 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            468899999999999999999999843

>PRK05973 replicative DNA helicase; Provisional

Probab=97.88  E-value=2.7e-05  Score=57.90  Aligned_cols=31  Identities=32%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..|..++..+++.|+||+|||+++..++...
T Consensus        58 ~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~   88 (237)
T PRK05973         58 FSQLKPGDLVLLGARPGHGKTLLGLELAVEA   88 (237)
T ss_pred             cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3466667789999999999999999888755

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.88  E-value=1.3e-05  Score=53.80  Aligned_cols=24  Identities=42%  Similarity=0.815  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++++||||+|||++++.+++.+
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHh
Confidence            588999999999999999999887

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.88  E-value=2.1e-05  Score=55.74  Aligned_cols=27  Identities=44%  Similarity=0.655  Sum_probs=24.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+++|.||+|+||||+++.+|..++..
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~~   31 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNME   31 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence            579999999999999999999998743

>KOG0477|consensus

Probab=97.87  E-value=5.4e-05  Score=62.65  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=34.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcC----------CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIA----------GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~----------~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |+|.+++|.++...+   -.|-..          .-|+||+|.|||||+-+.+.+++-..+
T Consensus       451 IyGh~~VK~AvAlaL---fGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R  508 (854)
T KOG0477|consen  451 IYGHEDVKRAVALAL---FGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR  508 (854)
T ss_pred             hhchHHHHHHHHHHH---hcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc
Confidence            689999997765433   222211          139999999999999999988876544

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=97.87  E-value=1e-06  Score=68.80  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             CCchHHHHHHHHH-HHHHHHhcC------cCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGV-VLGMIKEGK------IAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~-~~~~~~~g~------~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+|.+.+|.++-. +..-.....      ...-|+||.|.||||||.+.+.+++..
T Consensus        26 i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~   81 (331)
T PF00493_consen   26 IYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA   81 (331)
T ss_dssp             TTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-
T ss_pred             CcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC
Confidence            5788888865432 121111100      012399999999999999999876554

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.86  E-value=1.7e-05  Score=56.28  Aligned_cols=27  Identities=41%  Similarity=0.604  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.|+||+||||+++.+++.+.
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999885

>cd01394 radB RadB

Probab=97.86  E-value=2.5e-05  Score=57.28  Aligned_cols=33  Identities=39%  Similarity=0.564  Sum_probs=27.7

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..|..++..++++|+||+|||+++..+|...
T Consensus        11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          11 LLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             HhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345677777889999999999999999999766

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.86  E-value=1.7e-05  Score=56.40  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.||||+||||+++.|+..++.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            46789999999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.85  E-value=3.1e-05  Score=57.69  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=28.5

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +-+.+..|..++..++++||||+|||+++..++..
T Consensus        10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            34455677777889999999999999999987754

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PLN02459 probable adenylate kinase

Probab=97.85  E-value=2e-05  Score=59.27  Aligned_cols=38  Identities=29%  Similarity=0.446  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE   67 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~   67 (174)
                      .+++|.||||+||||+++.+|+.+|    +..++.++++...
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~----~~~is~gdllR~e   67 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLG----VPHIATGDLVREE   67 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC----CcEEeCcHHHHHH
Confidence            3588899999999999999999987    3455666665433

>PHA02774 E1; Provisional

Probab=97.84  E-value=3.7e-05  Score=63.49  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+..+..+++ +......++|+||||||||++|.+|++.++.
T Consensus       418 ~~fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~G  460 (613)
T PHA02774        418 ISFLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG  460 (613)
T ss_pred             HHHHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345566666665 3332368999999999999999999999863

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=97.84  E-value=5.7e-05  Score=61.50  Aligned_cols=133  Identities=19%  Similarity=0.229  Sum_probs=74.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhh---------h----hhh---hh-ccCcEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKT---------E----EET---EM-IEGEVVEIQ   86 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~---------~----~~~---~~-~~~~i~~~~   86 (174)
                      ..++++.|.+||||+++|+++.+... ...+|+.++++.+....+...         .    ...   +. ..|-+++++
T Consensus       157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e  236 (463)
T TIGR01818       157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE  236 (463)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence            35899999999999999999988764 345788888776532211110         0    000   01 134456667


Q ss_pred             EeccCCCCCCccce-e-E-EEeccchhh---hcc-ccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--
Q psy14616         87 IERPATGLGSKVGK-L-T-MKTTEMETS---YDL-GAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--  149 (174)
Q Consensus        87 id~~~~~~~~~~~~-~-~-~~~~~~~~~---~~~-~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--  149 (174)
                      +|.+ +.   ..|. + . +.+......   ... .+..+  |++++.+.      ..+.+.|..|+  ..|+++++.  
T Consensus       237 i~~l-~~---~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri--i~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R  310 (463)
T TIGR01818       237 IGDM-PL---DAQTRLLRVLADGEFYRVGGRTPIKVDVRI--VAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRER  310 (463)
T ss_pred             hhhC-CH---HHHHHHHHHHhcCcEEECCCCceeeeeeEE--EEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccc
Confidence            7766 22   1111 1 0 000000000   000 01112  55553332      34667889998  478899998  


Q ss_pred             HHHHHHHHHHHhch
Q psy14616        150 DEEIQAILKIRLVK  163 (174)
Q Consensus       150 ~~e~~~il~~~l~~  163 (174)
                      .+++..+++.++..
T Consensus       311 ~~Di~~l~~~~l~~  324 (463)
T TIGR01818       311 REDIPRLARHFLAL  324 (463)
T ss_pred             hhhHHHHHHHHHHH
Confidence            78888888877644

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.83  E-value=1.8e-05  Score=55.90  Aligned_cols=23  Identities=35%  Similarity=0.694  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +++++|+||+||||+++.+++.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            68999999999999999999888

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14529 adenylate kinase; Provisional

Probab=97.82  E-value=2e-05  Score=58.12  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||.++.||+.++.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~   26 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDL   26 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999999974

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.82  E-value=1.1e-05  Score=59.28  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +..+|+||+||+||||+|+.++.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC
Confidence            36799999999999999999973

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK10646 ADP-binding protein; Provisional

Probab=97.82  E-value=7e-05  Score=51.87  Aligned_cols=29  Identities=41%  Similarity=0.636  Sum_probs=25.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++..++|.|+=|+||||+++++++.+|.+
T Consensus        27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~   55 (153)
T PRK10646         27 GATVIYLYGDLGAGKTTFSRGFLQALGHQ   55 (153)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            45688999999999999999999999854

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=97.82  E-value=6.2e-05  Score=58.67  Aligned_cols=49  Identities=24%  Similarity=0.272  Sum_probs=35.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++|.++++..+-........|.. ..+.++|.||+|+|||++++.|-+.+
T Consensus        63 ~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l  112 (358)
T PF08298_consen   63 FYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL  112 (358)
T ss_pred             ccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46877777554443333333333 34678899999999999999999876

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>KOG0482|consensus

Probab=97.82  E-value=3.7e-05  Score=62.25  Aligned_cols=48  Identities=21%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC--cC--------CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK--IA--------GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~--~~--------~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |+|.+++|++|-.++   ..|-  .+        .-|++|.|.||+-|+-|.+.+.+...+
T Consensus       344 IyGheDVKKaLLLlL---VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR  401 (721)
T KOG0482|consen  344 IYGHEDVKKALLLLL---VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR  401 (721)
T ss_pred             hccchHHHHHHHHHh---hCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc
Confidence            689999997766544   3221  11        128999999999999999999876543

>PRK08233 hypothetical protein; Provisional

Probab=97.81  E-value=2.1e-05  Score=55.88  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.|+||+||||+|+.|+..++
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4677899999999999999999986

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.81  E-value=3.6e-05  Score=58.61  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ++.+.+.+.......+.+.++|++|+|||++|+.+++.
T Consensus         5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence            34555555553344568889999999999999999987

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.81  E-value=2.1e-05  Score=56.97  Aligned_cols=25  Identities=40%  Similarity=0.541  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+.++|.||+|+||||++-.+|..+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            4678999999999999888888765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK15115 response regulator GlrR; Provisional

Probab=97.79  E-value=6.2e-05  Score=60.99  Aligned_cols=38  Identities=29%  Similarity=0.533  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeeccccc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEI   63 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~   63 (174)
                      ..++++|++|||||++|+++.+.... ..+|+.+++..+
T Consensus       158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~  196 (444)
T PRK15115        158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGAL  196 (444)
T ss_pred             CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCC
Confidence            57999999999999999999887653 357888887765

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.79  E-value=2e-05  Score=56.52  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.||+|+||||+++.|+..++.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            57899999999999999999988764

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.78  E-value=3e-05  Score=56.46  Aligned_cols=32  Identities=38%  Similarity=0.504  Sum_probs=26.6

Q ss_pred             HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        18 ~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +-.|...+..++++||||+|||+++..++...
T Consensus         5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~   36 (209)
T TIGR02237         5 LGGGVERGTITQIYGPPGSGKTNICMILAVNA   36 (209)
T ss_pred             hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34566667888999999999999999998755

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=97.77  E-value=0.0007  Score=55.44  Aligned_cols=42  Identities=24%  Similarity=0.408  Sum_probs=34.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccch
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYS   65 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~   65 (174)
                      ....+|+.|.+||||..+|+++-+...+. .||+.+||+.+..
T Consensus       267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe  309 (560)
T COG3829         267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE  309 (560)
T ss_pred             CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence            34699999999999999999998776443 5899999876643

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.76  E-value=3.3e-05  Score=54.73  Aligned_cols=27  Identities=41%  Similarity=0.630  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.|+||+||||+|+.++..+.
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356889999999999999999999883

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.76  E-value=4.3e-05  Score=56.34  Aligned_cols=34  Identities=32%  Similarity=0.501  Sum_probs=27.9

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +++..|...+..++++||||+|||+++..+|...
T Consensus        14 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~   47 (225)
T PRK09361         14 ELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA   47 (225)
T ss_pred             HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445676667888999999999999999999755

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.75  E-value=3.5e-05  Score=56.85  Aligned_cols=43  Identities=28%  Similarity=0.555  Sum_probs=30.2

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh----CCCCCeeee
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL----GPDTPFTSM   58 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l----~~~~~~~~~   58 (174)
                      +.+..|..++..+|+.||||+|||+++..++...    |..+-++.+
T Consensus        10 ~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~   56 (226)
T PF06745_consen   10 ELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF   56 (226)
T ss_dssp             HHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred             HhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence            3445677778899999999999999999877433    554444443

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.75  E-value=2.6e-05  Score=53.89  Aligned_cols=24  Identities=42%  Similarity=0.675  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++++||||+|||+++..++..+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999998773

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.75  E-value=3.7e-05  Score=54.80  Aligned_cols=22  Identities=50%  Similarity=0.697  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++++||||+|||+++..++...
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~   23 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAG   23 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6899999999999999887654

A related protein is found in archaea.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.74  E-value=2.8e-05  Score=59.81  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+++.||||+||||+|+.+++.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            468899999999999999999998

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.73  E-value=4e-05  Score=55.54  Aligned_cols=26  Identities=31%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.|+||+||||+|+.+|..++.
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~~~   29 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHRAI   29 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            57889999999999999999999874

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.73  E-value=6.4e-05  Score=56.74  Aligned_cols=41  Identities=32%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeec
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMA   59 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~   59 (174)
                      -.|...+..++++|+||||||+++..++...   |..+.++.+.
T Consensus        17 ~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~   60 (260)
T COG0467          17 GGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE   60 (260)
T ss_pred             cCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            3556667899999999999999999888765   3334444444

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.73  E-value=2.9e-05  Score=58.22  Aligned_cols=23  Identities=43%  Similarity=0.787  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++|+|+||+||||+|+.+++.+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999883

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.72  E-value=8e-05  Score=59.51  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616          9 RAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus         9 ~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..|..+..+++.    ..|+++.||+|||||+++.+++..
T Consensus       197 ~~L~rl~~fve~----~~Nli~lGp~GTGKThla~~l~~~  232 (449)
T TIGR02688       197 LLLARLLPLVEP----NYNLIELGPKGTGKSYIYNNLSPY  232 (449)
T ss_pred             HHHHhhHHHHhc----CCcEEEECCCCCCHHHHHHHHhHH
Confidence            334455556664    369999999999999999998876

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PF05729 NACHT: NACHT domain

Probab=97.72  E-value=3.5e-05  Score=53.53  Aligned_cols=24  Identities=42%  Similarity=0.811  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.++++|+||+|||++++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            357899999999999999999877

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=6.7e-05  Score=59.36  Aligned_cols=25  Identities=36%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++..||..+
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999764

>PRK14700 recombination factor protein RarA; Provisional

Probab=97.71  E-value=3.3e-05  Score=58.82  Aligned_cols=41  Identities=15%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             hcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       123 ~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +||.|+...++++|+|||+++.|.+++.+++.+++++.+..
T Consensus        14 ATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~   54 (300)
T PRK14700         14 ATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQ   54 (300)
T ss_pred             ecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHh
Confidence            36667779999999999999999999999999999998865

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=97.71  E-value=0.00023  Score=59.62  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHhc-CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh-----hh--hh
Q psy14616          4 QLQARRAAGVVLGMIKEG-KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT-----EE--ET   75 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g-~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~--~~   75 (174)
                      |++++.++..+.   .+. ..  .++++.|++|++|++++++++..|....+|+.++-+..-..-+|..     -.  ..
T Consensus         8 ~~~~~~Al~l~a---v~p~~~--gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~   82 (584)
T PRK13406          8 WADAALAAALLA---VDPAGL--GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRP   82 (584)
T ss_pred             HHHHHHHHHHhC---cCcccc--ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCc
Confidence            666775544433   222 22  4899999999999999999999987655666554332211112221     00  00


Q ss_pred             hhccC--------cEEEEEEeccCCCC------CCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhc
Q psy14616         76 EMIEG--------EVVEIQIERPATGL------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLD  138 (174)
Q Consensus        76 ~~~~~--------~i~~~~id~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~s  138 (174)
                      ...||        .++++|+.++-...      ..+.+.+.+.-.  ...+. .+.-|.+|++. |..   ..+++++++
T Consensus        83 ~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~--G~s~~-~Pa~F~LIat~-~~~~~~~~L~~~lLD  158 (584)
T PRK13406         83 VAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERD--GLALR-LPARFGLVALD-EGAEEDERAPAALAD  158 (584)
T ss_pred             CCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEEC--CcEEe-cCCCcEEEecC-CChhcccCCCHHhHh
Confidence            11222        33444554441111      012222222111  11111 22334346653 322   558999999


Q ss_pred             ce-eeEecCCCCHHHH
Q psy14616        139 RM-VIIPTQPYQDEEI  153 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~  153 (174)
                      || ..+.+..++..+.
T Consensus       159 Rf~l~v~v~~~~~~~~  174 (584)
T PRK13406        159 RLAFHLDLDGLALRDA  174 (584)
T ss_pred             heEEEEEcCCCChHHh
Confidence            99 7788887775543

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.70  E-value=6.1e-05  Score=55.67  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=26.9

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.+..|..++..+++.||||+|||+++..++..
T Consensus        11 ~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~   43 (229)
T TIGR03881        11 KLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK   43 (229)
T ss_pred             HhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH
Confidence            334567777889999999999999999988754

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.70  E-value=0.00011  Score=57.46  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..+++++||+|+||||+.+++...+...
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip~~  187 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIPAI  187 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            4699999999999999999999988644

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.69  E-value=3.9e-05  Score=53.22  Aligned_cols=25  Identities=36%  Similarity=0.755  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.++||||+||||++..++..|.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHH
Confidence            5789999999999999999998883

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.69  E-value=0.00011  Score=56.33  Aligned_cols=27  Identities=41%  Similarity=0.633  Sum_probs=24.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      -.+++.|++|+|||++|..||+.+|..
T Consensus        93 ~iIlI~G~sgsGKStlA~~La~~l~~~  119 (301)
T PRK04220         93 IIILIGGASGVGTSTIAFELASRLGIR  119 (301)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            578899999999999999999999754

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.69  E-value=6.7e-05  Score=56.67  Aligned_cols=40  Identities=25%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeec
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMA   59 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~   59 (174)
                      .|..++..++++||||+|||+++..+|...   |..+.|+.+.
T Consensus        31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            566667889999999999999999987643   4344444443

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.69  E-value=0.00016  Score=51.82  Aligned_cols=27  Identities=33%  Similarity=0.605  Sum_probs=24.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+++.||+|+||||+.++++..+..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            468999999999999999999988753

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=97.69  E-value=0.00024  Score=56.05  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+..+..+..+++ |.....-++++|||.||||+++..|-+.++..
T Consensus       245 ~i~Fl~~lk~~Lk-g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~Gk  289 (432)
T PF00519_consen  245 FISFLIALKQFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGK  289 (432)
T ss_dssp             HHHHHHHHHHHHH-TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSE
T ss_pred             HHHHHHHHHHHHh-CCCcccEEEEECCCCCchhHHHHHHHHHhCCE
Confidence            4555667777776 44444567799999999999999999999644

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>PRK01184 hypothetical protein; Provisional

Probab=97.68  E-value=3.9e-05  Score=54.77  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++++||||+||||+++ +++.+|.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~g~   26 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREMGI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHcCC
Confidence            67899999999999998 7888873

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.68  E-value=4.3e-05  Score=54.87  Aligned_cols=26  Identities=19%  Similarity=0.394  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..++|+||+|+|||++++.|.+..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            45789999999999999999998875

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.68  E-value=3.5e-05  Score=53.98  Aligned_cols=22  Identities=45%  Similarity=0.771  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++|+|+|||||||+++.|++. |
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g   23 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-G   23 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T
T ss_pred             EEEECCCCCCHHHHHHHHHHc-C
Confidence            789999999999999999988 5

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.67  E-value=5.9e-05  Score=68.73  Aligned_cols=141  Identities=15%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             HHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc----------cchhhhhhhhhh----h-hhcc
Q psy14616         15 LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE----------IYSLEMNKTEEE----T-EMIE   79 (174)
Q Consensus        15 ~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~----~-~~~~   79 (174)
                      ++.+++-....-++|+.||+.+|||++...+|+..|..  |++++...          +.+.+-|+.+-.    . .+..
T Consensus       878 ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghk--fVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~  955 (4600)
T COG5271         878 LNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHK--FVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR  955 (4600)
T ss_pred             HHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCcc--EEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc
Confidence            33334333333489999999999999999999999955  77776321          111111111100    0 1112


Q ss_pred             CcEEEEEEecc-CCCCCC-ccceeEEEe---ccc--hhhhccccccchhhhcccCCCCC------CCHHhhcceeeEecC
Q psy14616         80 GEVVEIQIERP-ATGLGS-KVGKLTMKT---TEM--ETSYDLGAKMIEAIGTAYSSPHG------IPIDLLDRMVIIPTQ  146 (174)
Q Consensus        80 ~~i~~~~id~~-~~~~~~-~~~~~~~~~---~~~--~~~~~~~~~~~~~i~~~~~~~~~------l~~~l~sR~~~i~~~  146 (174)
                      |  .++-+|++ ..++.. +.-+..+.+   .++  .+...-++.-|.++||. |+|..      +..|++.||..++|.
T Consensus       956 G--yWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQ-Nppg~YgGRK~LSrAFRNRFlE~hFd 1032 (4600)
T COG5271         956 G--YWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQ-NPPGGYGGRKGLSRAFRNRFLEMHFD 1032 (4600)
T ss_pred             C--cEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeec-CCCccccchHHHHHHHHhhhHhhhcc
Confidence            2  23334433 122110 001111111   111  12222345556657777 77732      789999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy14616        147 PYQDEEIQAILKIR  160 (174)
Q Consensus       147 ~~~~~e~~~il~~~  160 (174)
                      ...++|+..||..+
T Consensus      1033 dipedEle~ILh~r 1046 (4600)
T COG5271        1033 DIPEDELEEILHGR 1046 (4600)
T ss_pred             cCcHHHHHHHHhcc
Confidence            99999999999873

>PRK13975 thymidylate kinase; Provisional

Probab=97.67  E-value=4.9e-05  Score=54.72  Aligned_cols=26  Identities=38%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|++|+||||+++.|++.++.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999999974

>PRK07667 uridine kinase; Provisional

Probab=97.67  E-value=0.00011  Score=53.10  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.|+||+||||+|+.|++.++
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4667899999999999999999884

>PRK13808 adenylate kinase; Provisional

Probab=97.66  E-value=5e-05  Score=59.08  Aligned_cols=35  Identities=29%  Similarity=0.532  Sum_probs=28.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .++|.||||+||||+++.||+.+|.    ..++.++++.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl----~~is~gdlLR   36 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGI----VQLSTGDMLR   36 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC----ceecccHHHH
Confidence            4889999999999999999999873    4555555554

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.66  E-value=7.7e-05  Score=54.20  Aligned_cols=37  Identities=43%  Similarity=0.714  Sum_probs=25.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      +.++++||+|||||.+|-.+|+.+|.  +.+..+.--++
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~--pvI~~Driq~y   38 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGA--PVISLDRIQCY   38 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH----EEEEE-SGGG-
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCC--CEEEecceecc
Confidence            36789999999999999999999984  45555544333

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.65  E-value=4.9e-05  Score=54.85  Aligned_cols=25  Identities=48%  Similarity=0.630  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +-+.||||+||||+|+.|+..|+..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~~   26 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNKR   26 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCcc
Confidence            5689999999999999999999743

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN02199 shikimate kinase

Probab=97.65  E-value=0.00015  Score=55.42  Aligned_cols=29  Identities=34%  Similarity=0.618  Sum_probs=26.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++.+++|.|.+|+|||++++.+|+.+|..
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~  129 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYT  129 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            35799999999999999999999999854

>PRK04182 cytidylate kinase; Provisional

Probab=97.65  E-value=5.3e-05  Score=53.60  Aligned_cols=26  Identities=46%  Similarity=0.727  Sum_probs=23.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+++.|++|+||||+++.+|+.+|..
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~   27 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLK   27 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            47899999999999999999999843

>PRK12338 hypothetical protein; Provisional

Probab=97.65  E-value=4.9e-05  Score=58.73  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.|+||+||||+|+.+|+.+|.
T Consensus         5 ~ii~i~G~sGsGKST~a~~la~~l~~   30 (319)
T PRK12338          5 YVILIGSASGIGKSTIASELARTLNI   30 (319)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCC
Confidence            57889999999999999999999974

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.65  E-value=0.00012  Score=56.92  Aligned_cols=25  Identities=36%  Similarity=0.402  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++..+|..+
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            5688899999999999999999877

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.65  E-value=5.3e-05  Score=54.97  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.||+|+|||++++.++..+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            456899999999999999999999874

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.64  E-value=4.3e-05  Score=54.26  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .-++|.||+|+||||+++.|++...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            4688999999999999999998763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK04328 hypothetical protein; Provisional

Probab=97.64  E-value=7.2e-05  Score=56.16  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +-+.+..|..++..++++||||+|||+++..++..
T Consensus        12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            33444567767789999999999999999987754

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.63  E-value=0.0001  Score=57.86  Aligned_cols=28  Identities=36%  Similarity=0.625  Sum_probs=24.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..+++++||+|+||||++++++..+...
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~~~  189 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIPPQ  189 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccCCC
Confidence            4699999999999999999999887543

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.63  E-value=5.5e-05  Score=52.31  Aligned_cols=22  Identities=45%  Similarity=0.724  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++++|+||+||||+|+.++..+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999988

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.62  E-value=8.4e-05  Score=56.53  Aligned_cols=25  Identities=40%  Similarity=0.535  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.++|.||+|+||||++..+|..+
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4678899999999999999999877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.62  E-value=8.2e-05  Score=55.24  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +-+.+..|...+..++++||||+|||+++..++...
T Consensus        14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~   49 (234)
T PRK06067         14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA   49 (234)
T ss_pred             HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            334445676667899999999999999999997653

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.61  E-value=7.3e-05  Score=53.21  Aligned_cols=27  Identities=30%  Similarity=0.565  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.||+|+||||+++.++..++.
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            457899999999999999999998863

>KOG0481|consensus

Probab=97.59  E-value=0.00012  Score=59.39  Aligned_cols=46  Identities=24%  Similarity=0.432  Sum_probs=33.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC---cC-------CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK---IA-------GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~---~~-------~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+|.+++|+++.=++   =.|.   +|       .=|+||.|.|||-|+-+.+.+-+..
T Consensus       333 IfG~~DiKkAiaClL---FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs  388 (729)
T KOG0481|consen  333 IFGHEDIKKAIACLL---FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS  388 (729)
T ss_pred             hcCchhHHHHHHHHh---hcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC
Confidence            579999997776544   2221   11       1399999999999999998876654

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.58  E-value=7.6e-05  Score=52.40  Aligned_cols=26  Identities=42%  Similarity=0.650  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+.++|++|+|||++|+.+|+.+|..
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~   27 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLK   27 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            47899999999999999999999843

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.58  E-value=7.4e-05  Score=54.48  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.|++.++
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35788999999999999999999984

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.58  E-value=8.2e-05  Score=61.09  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      |-+.+..|..++..+|+.||||+|||++|..++..
T Consensus        10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~   44 (484)
T TIGR02655        10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN   44 (484)
T ss_pred             HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            33444567777889999999999999999998653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.58  E-value=0.00014  Score=58.28  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|+.||||.||||+|.++|..++.
T Consensus       264 eGILIAG~PGaGKsTFaqAlAefy~~  289 (604)
T COG1855         264 EGILIAGAPGAGKSTFAQALAEFYAS  289 (604)
T ss_pred             cceEEecCCCCChhHHHHHHHHHHHh
Confidence            59999999999999999999998743

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.56  E-value=0.00019  Score=58.06  Aligned_cols=25  Identities=40%  Similarity=0.599  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|+|++|+||||++..+|..+
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            5688999999999999999999877

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.55  E-value=8.2e-05  Score=54.25  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..++|+||+|+||||+++.|.+.
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhc
Confidence            468889999999999999999754

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.55  E-value=6.2e-05  Score=55.87  Aligned_cols=33  Identities=33%  Similarity=0.496  Sum_probs=25.1

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+..|..++..+++.||||+|||+++..++..+
T Consensus        16 ~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         16 RLGGGIPAGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             hhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            334455557788999999999999987666544

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.55  E-value=0.0003  Score=48.30  Aligned_cols=30  Identities=43%  Similarity=0.732  Sum_probs=26.5

Q ss_pred             CcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         22 KIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        22 ~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++..++|.|+=|.||||+++++++.+|.
T Consensus        22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            345679999999999999999999999984

>TIGR00235 udk uridine kinase

Probab=97.55  E-value=9.2e-05  Score=53.96  Aligned_cols=27  Identities=37%  Similarity=0.594  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.||+|+||||++++++..++.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356779999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN02165 adenylate isopentenyltransferase

Probab=97.54  E-value=0.00011  Score=57.13  Aligned_cols=27  Identities=22%  Similarity=0.586  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+++.||+|+|||++|..||..++.
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~~   69 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFPS   69 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence            458899999999999999999999874

>KOG1051|consensus

Probab=97.54  E-value=0.00011  Score=63.60  Aligned_cols=149  Identities=22%  Similarity=0.289  Sum_probs=79.0

Q ss_pred             CCch--HHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhh--------
Q psy14616          1 MVGQ--LQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMN--------   69 (174)
Q Consensus         1 iiG~--~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~--------   69 (174)
                      ++|.  +++++.++.+.+     +- .+|-+|.|.||+|||.++..+|+..-.. ++- .+....++..+++        
T Consensus       188 vigr~deeirRvi~iL~R-----rt-k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~-~l~~~~l~~l~~g~l~aGa~~  260 (898)
T KOG1051|consen  188 VIGRHDEEIRRVIEILSR-----KT-KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPE-TLKDKKLIALDFGSLVAGAKR  260 (898)
T ss_pred             ccCCchHHHHHHHHHHhc-----cC-CCCceEEecCCCCchhHHHHHHHHhhcCCCCc-cccccceEEEEhhhcccCccc
Confidence            4674  777877777763     22 2689999999999999999999987221 221 1111222222222        


Q ss_pred             --hhhh----h-hhhc-cCcEEEE---EEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC----CCCH
Q psy14616         70 --KTEE----E-TEMI-EGEVVEI---QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH----GIPI  134 (174)
Q Consensus        70 --~~~~----~-~~~~-~~~i~~~---~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~  134 (174)
                        .++.    . .++. .+.-+++   +++-+...... .+.+. ..+.+........  +.+|+++++..+    .-+|
T Consensus       261 rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~-~~~~d-~~nlLkp~L~rg~--l~~IGatT~e~Y~k~iekdP  336 (898)
T KOG1051|consen  261 RGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN-YGAID-AANLLKPLLARGG--LWCIGATTLETYRKCIEKDP  336 (898)
T ss_pred             chHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc-chHHH-HHHhhHHHHhcCC--eEEEecccHHHHHHHHhhCc
Confidence              1110    0 0111 2233334   44444222111 00000 0000111111222  333777766653    3589


Q ss_pred             HhhcceeeEecCCCCHHHHHHHHHHH
Q psy14616        135 DLLDRMVIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       135 ~l~sR~~~i~~~~~~~~e~~~il~~~  160 (174)
                      ++-.|++.+.++-++.++...+|+..
T Consensus       337 alErrw~l~~v~~pS~~~~~~iL~~l  362 (898)
T KOG1051|consen  337 ALERRWQLVLVPIPSVENLSLILPGL  362 (898)
T ss_pred             chhhCcceeEeccCcccchhhhhhhh
Confidence            99999988888888887777777663

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.54  E-value=0.00023  Score=51.50  Aligned_cols=24  Identities=50%  Similarity=0.729  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++.||||||||++.+.+++.+
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~   42 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEAL   42 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHH
Confidence            478889999999999999888766

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.53  E-value=9.8e-05  Score=54.69  Aligned_cols=31  Identities=29%  Similarity=0.401  Sum_probs=26.0

Q ss_pred             HHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        18 ~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..|..++..+.++||||+|||+++..++..
T Consensus        12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             ccCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456666788899999999999999999855

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.53  E-value=8.6e-05  Score=53.66  Aligned_cols=22  Identities=41%  Similarity=0.637  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+.||+|+||||+++.++..+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.53  E-value=7.9e-05  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +++.||+|+|||++++.+++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            67899999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10536 hypothetical protein; Provisional

Probab=97.53  E-value=0.0002  Score=53.78  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.||+|||||++|.++|..
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48889999999999999999984

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.52  E-value=0.00013  Score=53.63  Aligned_cols=32  Identities=31%  Similarity=0.465  Sum_probs=26.9

Q ss_pred             HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         18 IKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        18 ~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..|..++..+.++||||+|||+++..+|...
T Consensus        12 l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~   43 (226)
T cd01393          12 LGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA   43 (226)
T ss_pred             hCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence            34677777889999999999999999998764

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.52  E-value=0.00016  Score=54.81  Aligned_cols=28  Identities=32%  Similarity=0.631  Sum_probs=24.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..++++.||+|+||||+..++...+...
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             ceEEEEECCCccccchHHHHHhhhcccc
Confidence            4699999999999999999999988544

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>KOG2543|consensus

Probab=97.52  E-value=0.00072  Score=53.15  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      |.++.++|-.|||||++.+.+-+.++.  +.+-+++-+++
T Consensus        30 PS~~~iyG~sgTGKT~~~r~~l~~~n~--~~vw~n~~ecf   67 (438)
T KOG2543|consen   30 PSIVHIYGHSGTGKTYLVRQLLRKLNL--ENVWLNCVECF   67 (438)
T ss_pred             ceeEEEeccCCCchhHHHHHHHhhcCC--cceeeehHHhc
Confidence            467899999999999999999999864  34555554444

>PTZ00202 tuzin; Provisional

Probab=97.51  E-value=0.00017  Score=58.08  Aligned_cols=48  Identities=19%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++|.+....++.........+  .+.-++|.||+|+|||++++.++..++
T Consensus       264 FVGReaEla~Lr~VL~~~d~~--~privvLtG~~G~GKTTLlR~~~~~l~  311 (550)
T PTZ00202        264 FVSREAEESWVRQVLRRLDTA--HPRIVVFTGFRGCGKSSLCRSAVRKEG  311 (550)
T ss_pred             CCCcHHHHHHHHHHHhccCCC--CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            467777775555544322222  235778999999999999999998886

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.51  E-value=0.00014  Score=53.67  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=26.7

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.+..|..++..+++.|+||+|||+++..++..
T Consensus         7 ~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~   39 (224)
T TIGR03880         7 EMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQ   39 (224)
T ss_pred             HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            334566666788999999999999999988864

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.50  E-value=0.00018  Score=60.12  Aligned_cols=28  Identities=32%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+..++|+|+||+||||+|+.||..++.
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~  418 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLME  418 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence            3568889999999999999999999974

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.50  E-value=0.00021  Score=58.69  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=30.0

Q ss_pred             HHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         13 VVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        13 ~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+-+.+-.|..++..+|+.||||+|||+++..++...
T Consensus       251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~  287 (484)
T TIGR02655       251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA  287 (484)
T ss_pred             hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444556677778899999999999999999998765

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.50  E-value=0.00023  Score=54.89  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=23.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++++||+|+||||++++++..+.
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            36999999999999999999998874

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.50  E-value=0.00019  Score=50.77  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI   63 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~   63 (174)
                      .+++.||||+|||++|..++..++.+  ...+..+..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~--~~~iat~~~   37 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQ--VLYIATAQP   37 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCC--cEeCcCCCC
Confidence            58899999999999999999988754  334444433

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.49  E-value=0.00011  Score=62.97  Aligned_cols=25  Identities=36%  Similarity=0.623  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.+.||||+||||+++.||+.+|.
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~   27 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGY   27 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999999983

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=97.49  E-value=0.00032  Score=56.77  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=72.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC-CCCCeeeecccccchhhhhhhh--hh-----------h----hhccCcEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG-PDTPFTSMAGSEIYSLEMNKTE--EE-----------T----EMIEGEVVEIQ   86 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~--~~-----------~----~~~~~~i~~~~   86 (174)
                      ...++++|.+||||+++|+++..... ...+|+.++++.+....+...-  ..           .    ....|-+++++
T Consensus       162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde  241 (441)
T PRK10365        162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE  241 (441)
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence            46899999999999999999987664 3367888888765432221100  00           0    00134467778


Q ss_pred             EeccCCCCCCcccee--EE-Eeccchhhh--ccccccchhhhcccCCC------CCCCHHhhcce--eeEecCCCC--HH
Q psy14616         87 IERPATGLGSKVGKL--TM-KTTEMETSY--DLGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPYQ--DE  151 (174)
Q Consensus        87 id~~~~~~~~~~~~~--~~-~~~~~~~~~--~~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~~--~~  151 (174)
                      +|.+ +.   ..|..  .+ ........-  .....-+..|++++.+.      ..+.+.|..|+  ..+.++++.  .+
T Consensus       242 i~~l-~~---~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~  317 (441)
T PRK10365        242 IGDI-SP---MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRE  317 (441)
T ss_pred             cccC-CH---HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcch
Confidence            8877 32   11210  00 000000000  00011112255554333      23667777887  456677776  45


Q ss_pred             HHHHHHHHHhch
Q psy14616        152 EIQAILKIRLVK  163 (174)
Q Consensus       152 e~~~il~~~l~~  163 (174)
                      ++..+++..+.+
T Consensus       318 Di~~l~~~~l~~  329 (441)
T PRK10365        318 DIPLLAGHFLQR  329 (441)
T ss_pred             hHHHHHHHHHHH
Confidence            777777776654

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.49  E-value=0.00012  Score=53.21  Aligned_cols=35  Identities=34%  Similarity=0.627  Sum_probs=28.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .+-+-||+|+||+|+|+.+|+.||    |.+++.+.++.
T Consensus         6 ~IAIDGPagsGKsTvak~lA~~Lg----~~yldTGamYR   40 (222)
T COG0283           6 IIAIDGPAGSGKSTVAKILAEKLG----FHYLDTGAMYR   40 (222)
T ss_pred             EEEEeCCCccChHHHHHHHHHHhC----CCeecccHHHH
Confidence            566889999999999999999998    44666665553

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.48  E-value=0.00011  Score=56.10  Aligned_cols=25  Identities=40%  Similarity=0.569  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++..+|..+
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999876

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.48  E-value=0.00025  Score=55.20  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+++++|++|+||||+.++++..+
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999999876

>PRK06761 hypothetical protein; Provisional

Probab=97.48  E-value=0.00012  Score=55.77  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=23.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.+++.||||+||||+++.+++.+..
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            46889999999999999999999864

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.48  E-value=0.00013  Score=50.77  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.|+|.||+||||+|+++.+.|
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L   26 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRL   26 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999988

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.47  E-value=0.00011  Score=52.30  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|+||+|+||+|++++|-...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4688999999999999999998876

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.46  E-value=0.00012  Score=53.12  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+++.||+|+||||++.++++.+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            578999999999999999998874

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.46  E-value=0.00019  Score=53.44  Aligned_cols=29  Identities=38%  Similarity=0.691  Sum_probs=25.6

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..+++.|+||+|||+++..++...
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~   37 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENI   37 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            77788899999999999999999887654

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.00012  Score=57.10  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.-++|.||+||||||+.+.+|-..
T Consensus        29 Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          29 GEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999543

>TIGR02012 tigrfam_recA protein RecA

Probab=97.45  E-value=0.0002  Score=55.62  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..++++||||+|||+||..++...
T Consensus        50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~   79 (321)
T TIGR02012        50 GGLPRGRIIEIYGPESSGKTTLALHAIAEA   79 (321)
T ss_pred             CCCcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            466666788899999999999998877554

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.44  E-value=0.00014  Score=51.45  Aligned_cols=23  Identities=52%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+++.||||+|||+++..+|..+
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~   24 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PLN03210 Resistant to P

Probab=97.44  E-value=0.00023  Score=64.21  Aligned_cols=48  Identities=27%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +||.+.-.+.+..+..   -+....+.+-++||+|+||||+|++++..+..
T Consensus       186 ~vG~~~~l~~l~~lL~---l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~  233 (1153)
T PLN03210        186 FVGIEDHIAKMSSLLH---LESEEVRMVGIWGSSGIGKTTIARALFSRLSR  233 (1153)
T ss_pred             ccchHHHHHHHHHHHc---cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence            4787777766555442   22223467889999999999999999887743

syringae 6; Provisional

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.43  E-value=0.0002  Score=55.40  Aligned_cols=26  Identities=38%  Similarity=0.663  Sum_probs=23.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.||+|+|||++|..||+.++.
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~~~   30 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRLNG   30 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            57889999999999999999999874

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.43  E-value=0.00031  Score=57.39  Aligned_cols=25  Identities=36%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++..||..+
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHH
Confidence            4578899999999999999999765

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.43  E-value=0.00019  Score=59.03  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +..+.+.||+|+||||+++.+|+.+|    +..++.+.++.
T Consensus       284 ~~ii~i~G~sgsGKst~a~~la~~l~----~~~~d~g~~YR  320 (512)
T PRK13477        284 QPIIAIDGPAGAGKSTVTRAVAKKLG----LLYLDTGAMYR  320 (512)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC----CeEecCCceeh
Confidence            45778999999999999999999997    33455444443

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.43  E-value=0.00015  Score=50.11  Aligned_cols=24  Identities=33%  Similarity=0.703  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.++||.||+|+|||++|..+.+.
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            579999999999999999888875

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>KOG3354|consensus

Probab=97.42  E-value=0.00018  Score=49.71  Aligned_cols=27  Identities=33%  Similarity=0.617  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..+++.|++|+||||++++++++|+++
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~~   39 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGLK   39 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCCc
Confidence            478899999999999999999999865

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.42  E-value=0.00015  Score=51.78  Aligned_cols=23  Identities=39%  Similarity=0.598  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.+.|+||+||||+|+.++..+.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999884

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.00022  Score=52.56  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=25.0

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++|.   .+.|+.|||||||||+.+-+|+.+
T Consensus       132 ly~~g~---lntLiigpP~~GKTTlLRdiaR~~  161 (308)
T COG3854         132 LYQNGW---LNTLIIGPPQVGKTTLLRDIARLL  161 (308)
T ss_pred             HHhcCc---eeeEEecCCCCChHHHHHHHHHHh
Confidence            344554   379999999999999999999987

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.42  E-value=0.00024  Score=55.05  Aligned_cols=31  Identities=29%  Similarity=0.297  Sum_probs=25.1

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..|...+..++++||||+|||+++..+|...
T Consensus        89 ~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~  119 (310)
T TIGR02236        89 GGGIETQAITEVFGEFGSGKTQICHQLAVNV  119 (310)
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455556778899999999999999998663

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=97.42  E-value=0.00016  Score=51.99  Aligned_cols=26  Identities=35%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|++|+||||+++.|++.++.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999853

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK04132 replication factor C small subunit; Provisional

Probab=97.42  E-value=0.00014  Score=62.92  Aligned_cols=35  Identities=34%  Similarity=0.578  Sum_probs=29.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHH
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTA   40 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~   40 (174)
                      ||||++++   ..+..++++++.+  |++|+||||+||+.
T Consensus        21 IiGqe~i~---~~Lk~~i~~~~i~--h~l~~g~~g~~~cl   55 (846)
T PRK04132         21 IVGQEHIV---KRLKHYVKTGSMP--HLLFAGPPGVGKCL   55 (846)
T ss_pred             hcCcHHHH---HHHHHHHHcCCCC--eEEEECCCCCCccc
Confidence            69999999   4666666888776  68899999999964

>TIGR00017 cmk cytidylate kinase

Probab=97.42  E-value=0.00018  Score=52.92  Aligned_cols=25  Identities=36%  Similarity=0.640  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.+.||+|+||||+++.+|+.++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~   28 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGY   28 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5778999999999999999999984

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.41  E-value=0.00023  Score=50.84  Aligned_cols=27  Identities=37%  Similarity=0.607  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++.++|.||+|+|||++++.|......
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~   28 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPD   28 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhccc
Confidence            368999999999999999999998753

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.40  E-value=0.00016  Score=47.04  Aligned_cols=22  Identities=36%  Similarity=0.675  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la   46 (174)
                      +..+.|.||+|+||||+++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4678999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=97.40  E-value=0.00053  Score=48.27  Aligned_cols=44  Identities=30%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |+++.   ..+.+.++.. ....+++|.+|+|+|||.++-.++..+..
T Consensus         8 Q~~ai---~~i~~~~~~~-~~~~~~ll~~~tGsGKT~~~~~~~~~l~~   51 (184)
T PF04851_consen    8 QQEAI---ARIINSLENK-KEERRVLLNAPTGSGKTIIALALILELAR   51 (184)
T ss_dssp             HHHHH---HHHHHHHHTT-SGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred             HHHHH---HHHHHHHHhc-CCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence            55555   4555555554 12369999999999999999987777754

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.40  E-value=0.00022  Score=56.56  Aligned_cols=35  Identities=31%  Similarity=0.638  Sum_probs=28.4

Q ss_pred             HHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         15 LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        15 ~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -+.+-.|..++..++++|+||+|||+++..+|..+
T Consensus        72 D~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~  106 (372)
T cd01121          72 DRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL  106 (372)
T ss_pred             HHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33444566677889999999999999999998766

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00015  Score=56.78  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .-+.|.||+||||||+.|.+|-.
T Consensus        32 ef~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            45779999999999999999954

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.39  E-value=0.00023  Score=57.82  Aligned_cols=36  Identities=28%  Similarity=0.629  Sum_probs=29.3

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +-+.+-.|..++..++++||||+|||+++..+|...
T Consensus        69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~  104 (446)
T PRK11823         69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL  104 (446)
T ss_pred             HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344445677777889999999999999999998765

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.39  E-value=0.00017  Score=57.48  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|+||+|+||||++..+|..+
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999999765

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.39  E-value=0.00061  Score=50.46  Aligned_cols=27  Identities=33%  Similarity=0.475  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.||+|+||||+++.++..+..
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            457779999999999999999998843

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.38  E-value=0.00018  Score=51.62  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -++|.|++|+||||+++.|++.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999988

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14974 cell division protein FtsY; Provisional

Probab=97.37  E-value=0.00023  Score=55.71  Aligned_cols=25  Identities=40%  Similarity=0.453  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||||+||||++..+|..+
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999999877

>smart00072 GuKc Guanylate kinase homologues

Probab=97.37  E-value=0.00018  Score=51.51  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.++|.||+|+||++++..|.+..
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcC
Confidence            579999999999999999999875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PTZ00301 uridine kinase; Provisional

Probab=97.37  E-value=0.00018  Score=52.66  Aligned_cols=23  Identities=26%  Similarity=0.605  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -+-+.||||+||||+|+.|++.+
T Consensus         5 iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          5 VIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEECCCcCCHHHHHHHHHHHH
Confidence            45689999999999999999876

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.36  E-value=0.00019  Score=57.50  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=25.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+.+++.|++|+|||||++.||+.+|..
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~  246 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLANIFNTT  246 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            3689999999999999999999998743

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.36  E-value=0.00027  Score=51.23  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI   63 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~   63 (174)
                      |..+++.|+||+|||+++..+...++ ...++.++...+
T Consensus        15 P~~~i~aG~~GsGKSt~~~~~~~~~~-~~~~v~i~~D~~   52 (199)
T PF06414_consen   15 PTLIIIAGQPGSGKSTLARQLLEEFG-GGGIVVIDADEF   52 (199)
T ss_dssp             -EEEEEES-TTSTTHHHHHHHHHHT--TT-SEEE-GGGG
T ss_pred             CEEEEEeCCCCCCHHHHHHHhhhhcc-CCCeEEEehHHH
Confidence            47888999999999999999998873 123455554443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.36  E-value=0.00014  Score=51.11  Aligned_cols=20  Identities=40%  Similarity=0.629  Sum_probs=18.8

Q ss_pred             EcCCCCcHHHHHHHHHHHhC
Q psy14616         31 AGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        31 ~GppG~GKT~la~~la~~l~   50 (174)
                      .||||+||||+++.++..++
T Consensus         1 ~G~sGsGKSTla~~la~~l~   20 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH   20 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC
Confidence            49999999999999999997

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.35  E-value=0.00019  Score=51.55  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.+.|+||+||||+|+.+++.++
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            56889999999999999999984

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.35  E-value=0.00034  Score=40.82  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...+|+||+|+||||+.-++.-.|
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998877

>PRK08356 hypothetical protein; Provisional

Probab=97.35  E-value=0.00018  Score=51.92  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|+||||+||||+|+.|++ .|
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~g   29 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-KG   29 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CC
Confidence            4678999999999999999964 55

>PF13479 AAA_24: AAA domain

Probab=97.35  E-value=0.00013  Score=53.53  Aligned_cols=20  Identities=50%  Similarity=0.828  Sum_probs=18.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGL   45 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~l   45 (174)
                      ..+++|||||+|||++|..+
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhC
Confidence            57899999999999999988

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.34  E-value=0.00023  Score=51.56  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.|++|+||||+++.++..+.
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~~l~   49 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46888999999999999999999873

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.34  E-value=0.00049  Score=52.30  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++++.||||+||||+.+.++..+..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~  137 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST  137 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence            59999999999999999999988753

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PLN02840 tRNA dimethylallyltransferase

Probab=97.34  E-value=0.0003  Score=56.35  Aligned_cols=27  Identities=33%  Similarity=0.703  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..+++.||+|+|||++|..||+.++..
T Consensus        22 ~vi~I~GptgsGKTtla~~La~~~~~~   48 (421)
T PLN02840         22 KVIVISGPTGAGKSRLALELAKRLNGE   48 (421)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence            468899999999999999999999743

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.0006  Score=50.79  Aligned_cols=28  Identities=43%  Similarity=0.585  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.-+|+-|+|||||||+|.-+|+.||.+
T Consensus        89 p~IILIGGasGVGkStIA~ElA~rLgI~  116 (299)
T COG2074          89 PLIILIGGASGVGKSTIAGELARRLGIR  116 (299)
T ss_pred             CeEEEecCCCCCChhHHHHHHHHHcCCc
Confidence            3678888999999999999999999865

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.33  E-value=0.00035  Score=52.51  Aligned_cols=39  Identities=28%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI   63 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~   63 (174)
                      +..+.+.||.|+|||||.++++..+....--+.+.+..+
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i   66 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI   66 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence            467889999999999999999998864433345554443

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=97.33  E-value=0.00048  Score=53.57  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+++++|++|+||||++++++..+
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4699999999999999999999864

>PRK05439 pantothenate kinase; Provisional

Probab=97.33  E-value=0.00069  Score=52.42  Aligned_cols=25  Identities=32%  Similarity=0.278  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.|+||+||||+|+.|+..++
T Consensus        87 ~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         87 FIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4666899999999999999998774

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.32  E-value=0.00032  Score=54.50  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=24.4

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|...+..+.++||||+|||++|..++...
T Consensus        50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~   79 (325)
T cd00983          50 GGYPKGRIIEIYGPESSGKTTLALHAIAEA   79 (325)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            455556788899999999999999887544

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR00376 DNA helicase, putative

Probab=97.32  E-value=0.00028  Score=59.77  Aligned_cols=24  Identities=42%  Similarity=0.664  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++++||||||||+++..+...+
T Consensus       174 ~~~lI~GpPGTGKT~t~~~ii~~~  197 (637)
T TIGR00376       174 DLFLIHGPPGTGKTRTLVELIRQL  197 (637)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            478899999999998877766543

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>TIGR00416 sms DNA repair protein RadA

Probab=97.32  E-value=0.00033  Score=57.04  Aligned_cols=36  Identities=31%  Similarity=0.609  Sum_probs=29.1

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +-+.+-.|..++..+++.|+||+|||+++..+|..+
T Consensus        83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~  118 (454)
T TIGR00416        83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL  118 (454)
T ss_pred             HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            334445677777899999999999999999998766

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK13764 ATPase; Provisional

Probab=97.32  E-value=0.00022  Score=59.70  Aligned_cols=27  Identities=41%  Similarity=0.694  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|++||||+||||++.+++..++.
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            368999999999999999999998853

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.32  E-value=0.00051  Score=53.03  Aligned_cols=25  Identities=28%  Similarity=0.581  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||||+||||++..++..+
T Consensus        34 ~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        34 AHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688899999999999999999876

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.31  E-value=0.00027  Score=46.48  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+++.|++|+|||+|.+.++..-
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            37899999999999999999754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.31  E-value=0.00029  Score=54.80  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..|...+..++++||||+|||+++..+|...
T Consensus        96 ~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~  126 (317)
T PRK04301         96 GGGIETQSITEFYGEFGSGKTQICHQLAVNV  126 (317)
T ss_pred             cCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence            3455556788899999999999999998653

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.30  E-value=0.00033  Score=57.90  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=27.9

Q ss_pred             HHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         14 VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        14 ~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +-+.+..|..++..+|++|+||+|||+++..++..
T Consensus        20 LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~   54 (509)
T PRK09302         20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVN   54 (509)
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            33444567777889999999999999999988753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.30  E-value=0.00022  Score=48.18  Aligned_cols=26  Identities=31%  Similarity=0.586  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+.+.||+|+||||+.++++...
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            35689999999999999999998655

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=97.29  E-value=0.00025  Score=57.36  Aligned_cols=28  Identities=36%  Similarity=0.545  Sum_probs=25.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..++++|+||+||||+|..+|..+|..
T Consensus       255 p~vil~~G~~G~GKSt~a~~LA~~lg~~  282 (475)
T PRK12337        255 PLHVLIGGVSGVGKSVLASALAYRLGIT  282 (475)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            4788899999999999999999999753

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.29  E-value=0.00024  Score=52.38  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +-+.||+|+||||+|+.|+..+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999884

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.28  E-value=0.00032  Score=50.09  Aligned_cols=26  Identities=42%  Similarity=0.657  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+++.|+||+||||+++.++..+
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l   42 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKL   42 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34688899999999999999999987

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.28  E-value=0.00046  Score=48.25  Aligned_cols=25  Identities=32%  Similarity=0.575  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.++|.|++|+|||||+..|....
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3699999999999999999988653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.28  E-value=0.00037  Score=53.31  Aligned_cols=24  Identities=33%  Similarity=0.627  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +++.||+|+|||++|..+|+.++.
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~   25 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNA   25 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            678999999999999999999873

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.28  E-value=0.00051  Score=54.70  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.++|.||+|+||||++..||..+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHH
Confidence            3688999999999999999999877

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.27  E-value=0.00029  Score=46.92  Aligned_cols=25  Identities=40%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++++++||+|+|||+++..++..+.
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~~   25 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELL   25 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHH
Confidence            3789999999999999888887764

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00026  Score=51.57  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..+.+.||+|+||||+.|++...
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            568999999999999999999753

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.27  E-value=0.0006  Score=52.83  Aligned_cols=28  Identities=25%  Similarity=0.528  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.++++.||+|+||||++++++..+..
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~  170 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPK  170 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence            3469999999999999999999987743

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.26  E-value=0.00038  Score=51.49  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..+.+.||+|+|||++++.+|+.+|..
T Consensus         5 ~~i~i~g~~gsGksti~~~la~~~~~~   31 (225)
T PRK00023          5 IVIAIDGPAGSGKGTVAKILAKKLGFH   31 (225)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            467899999999999999999999843

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.25  E-value=0.00063  Score=47.91  Aligned_cols=28  Identities=29%  Similarity=0.541  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..+++.||+||||+++.+.+|.....+
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Lisp~   56 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLISPT   56 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhccCCC
Confidence            5688999999999999999999876433

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.25  E-value=0.0054  Score=49.24  Aligned_cols=114  Identities=19%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh---hhhhhhccC---cEEEEEEeccCCCCCCccce
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT---EEETEMIEG---EVVEIQIERPATGLGSKVGK  100 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~i~~~~id~~~~~~~~~~~~  100 (174)
                      .++++||-+|||||+.+.+.+.+-..  .+.++..+.........   ....+....   -+++||++.. .+       
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~--~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v-~~-------  108 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEE--IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV-PD-------  108 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcc--eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc-hh-------
Confidence            88999999999999998888776433  33344333322221111   111222322   2344444433 11       


Q ss_pred             eEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhcceeeEecCCCCHHHHHH
Q psy14616        101 LTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLDRMVIIPTQPYQDEEIQA  155 (174)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~sR~~~i~~~~~~~~e~~~  155 (174)
                         -...+....|..+.-+  +.++.+..   ....+.+..|...+.+.|++-.|...
T Consensus       109 ---W~~~lk~l~d~~~~~v--~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~  161 (398)
T COG1373         109 ---WERALKYLYDRGNLDV--LITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK  161 (398)
T ss_pred             ---HHHHHHHHHccccceE--EEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence               0111223333333211  22222222   44678888999999999999888765

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=97.24  E-value=0.0038  Score=48.23  Aligned_cols=49  Identities=22%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          4 QLQARRAAGVVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++.+..+..+....-.+..+ ...++|+|+.|+|||++...+...+|..
T Consensus        54 d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~  103 (304)
T TIGR01613        54 DNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDY  103 (304)
T ss_pred             CHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChh
Confidence            334555555555544444333 3567789999999999999999888743

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.24  E-value=0.00033  Score=52.58  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++.+++.||+|+|||++++.+++.+..
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            679999999999999999999988754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.23  E-value=0.00035  Score=49.80  Aligned_cols=22  Identities=45%  Similarity=0.649  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.++|++|+||||+++.+++ +|
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g   23 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LG   23 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CC
Confidence            67999999999999999998 66

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.23  E-value=0.0004  Score=57.04  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=23.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +++|.|+||+||||+++.+|+.++..
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~   27 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQ   27 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            58899999999999999999999843

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.22  E-value=0.00099  Score=52.06  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+-+.||||+||||++..++..+
T Consensus        57 ~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         57 LRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            456699999999999999988776

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.22  E-value=0.00036  Score=50.76  Aligned_cols=24  Identities=38%  Similarity=0.609  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+++.||+|||||++|-+.|..+
T Consensus        20 ~~v~~~G~AGTGKT~LA~a~Al~~   43 (205)
T PF02562_consen   20 DLVIVNGPAGTGKTFLALAAALEL   43 (205)
T ss_dssp             SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            478899999999999999998654

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.22  E-value=0.00034  Score=56.47  Aligned_cols=25  Identities=36%  Similarity=0.530  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++..||..+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~  245 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARY  245 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999888655

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.21  E-value=0.00042  Score=57.74  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..++|.|+||+||||+++.+|+.||.+
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~~   33 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRLP   33 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            489999999999999999999999954

>PRK15453 phosphoribulokinase; Provisional

Probab=97.21  E-value=0.00054  Score=52.13  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+.+.|.||+||||+++++++.++.
T Consensus         6 piI~ItG~SGsGKTTva~~l~~if~~   31 (290)
T PRK15453          6 PIIAVTGSSGAGTTTVKRAFEKIFRR   31 (290)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47889999999999999999988853

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.20  E-value=0.00042  Score=54.06  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ...+++.|+||+||||+++.|++.++..
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~  189 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTT  189 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            3589999999999999999999988754

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.20  E-value=0.00039  Score=52.67  Aligned_cols=30  Identities=33%  Similarity=0.457  Sum_probs=25.4

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+++.||||+|||+++..+|..+
T Consensus        25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~   54 (271)
T cd01122          25 KGLRKGELIILTAGTGVGKTTFLREYALDL   54 (271)
T ss_pred             EEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            466667789999999999999999888764

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.20  E-value=0.00036  Score=54.72  Aligned_cols=29  Identities=24%  Similarity=0.146  Sum_probs=23.5

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..|...+....++||||+|||.++..+|-
T Consensus       120 gGGi~~G~ItEI~G~~GsGKTql~lqlav  148 (344)
T PLN03187        120 GGGIETRCITEAFGEFRSGKTQLAHTLCV  148 (344)
T ss_pred             CCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence            34555566778999999999999998874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.0004  Score=51.59  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.-+-+.||+||||||+.+.+|-..
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578899999999999999999654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.19  E-value=0.00035  Score=47.83  Aligned_cols=22  Identities=41%  Similarity=0.717  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      +-++|.||.|+|||||+++|-.
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            4689999999999999999864

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10867 signal recognition particle protein; Provisional

Probab=97.19  E-value=0.00032  Score=56.68  Aligned_cols=25  Identities=40%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|+||+|+||||++-.+|..+
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l  124 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYL  124 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4678899999999999988888766

>KOG1803|consensus

Probab=97.18  E-value=0.00038  Score=57.43  Aligned_cols=24  Identities=33%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             ceEEEEcCCCCcHH-HHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKT-AIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT-~la~~la~~l   49 (174)
                      ..++++|||||||| |++..+.+.+
T Consensus       202 ~l~~I~GPPGTGKT~TlvEiI~qlv  226 (649)
T KOG1803|consen  202 DLLIIHGPPGTGKTRTLVEIISQLV  226 (649)
T ss_pred             CceEeeCCCCCCceeeHHHHHHHHH
Confidence            47889999999999 5666666655

>PRK00698 tmk thymidylate kinase; Validated

Probab=97.18  E-value=0.00042  Score=50.07  Aligned_cols=25  Identities=28%  Similarity=0.306  Sum_probs=22.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .-+.|.||+|+||||+++.|++.++
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~   28 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLE   28 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999873

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.18  E-value=0.00054  Score=53.65  Aligned_cols=23  Identities=35%  Similarity=0.627  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+|.|+||+||||+++.++..+.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~   24 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLR   24 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999998874

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.17  E-value=0.00046  Score=55.32  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++|.||+|+||||++..+|...
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999654

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0021  Score=53.01  Aligned_cols=134  Identities=28%  Similarity=0.347  Sum_probs=75.9

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-hhccCcEEEEEEeccC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-EMIEGEVVEIQIERPA   91 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~i~~~~id~~~   91 (174)
                      .+..+++.++++||||+|||.+++++|.. +.  .+...+...+.+...+..+       ..+ ...++.+.++++|...
T Consensus        13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~   89 (494)
T COG0464          13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GA--EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALA   89 (494)
T ss_pred             hCCCCCCCceeeCCCCCchhHHHHHHHhc-cC--cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcc
Confidence            35566789999999999999999999998 32  2345555555555555544       122 2235677777888774


Q ss_pred             CCCCC-cccee-EEE---eccchhhhccccccchhhhcccCCCCCCCHHhh--cce-eeEecCCCCHHHHHHHHHHH
Q psy14616         92 TGLGS-KVGKL-TMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL--DRM-VIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus        92 ~~~~~-~~~~~-~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~--sR~-~~i~~~~~~~~e~~~il~~~  160 (174)
                      ..... ..... ...   ...+.... ......  ++ .++++..++++++  .|+ ..+.+..+......++++..
T Consensus        90 ~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~--~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~  162 (494)
T COG0464          90 PKRSSDQGEVERRVVAQLLALMDGLK-RGQVIV--IG-ATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIH  162 (494)
T ss_pred             cCccccccchhhHHHHHHHHhccccc-CCceEE--Ee-ecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHH
Confidence            43311 00000 000   00011111 122222  44 5578888888877  677 55666666655455665554

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.17  E-value=0.0011  Score=53.54  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|+||+|+||||++..+|..+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l  124 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYY  124 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999877

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.16  E-value=0.00043  Score=49.71  Aligned_cols=24  Identities=42%  Similarity=0.684  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.+.|++|+||||+++.|++.++.
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~   25 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGY   25 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            678999999999999999998764

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK04296 thymidine kinase; Provisional

Probab=97.16  E-value=0.00043  Score=49.84  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .-.+++||||+||||++..++..+
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
Confidence            457889999999999999888766

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.00058  Score=52.55  Aligned_cols=27  Identities=44%  Similarity=0.776  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..++++||+++|||.+|-.||+.+|.+
T Consensus         4 ~~i~I~GPTAsGKT~lai~LAk~~~~e   30 (308)
T COG0324           4 KLIVIAGPTASGKTALAIALAKRLGGE   30 (308)
T ss_pred             cEEEEECCCCcCHHHHHHHHHHHcCCc
Confidence            578999999999999999999999854

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.16  E-value=0.00044  Score=54.63  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++..++.||||||||++++.+++.+..
T Consensus       133 GQR~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        133 GQRGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            578899999999999999999998743

>PLN02796 D-glycerate 3-kinase

Probab=97.15  E-value=0.0012  Score=51.71  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .-+-+.||+|+||||+++.|+..+.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3466899999999999999998884

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.15  E-value=0.00037  Score=54.04  Aligned_cols=29  Identities=21%  Similarity=0.142  Sum_probs=23.7

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..|...+....++||||+|||+++..+|-
T Consensus        90 gGGi~~G~iteI~G~~GsGKTql~lqla~  118 (313)
T TIGR02238        90 GGGIESMSITEVFGEFRCGKTQLSHTLCV  118 (313)
T ss_pred             CCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence            44555567888999999999999998874

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.15  E-value=0.00045  Score=50.61  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.+.||+|+|||||.+.++..+.
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            356888999999999999999997653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=97.14  E-value=0.0012  Score=49.63  Aligned_cols=43  Identities=23%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616          6 QARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus         6 ~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+...+..+....+.....+..++|.|++|+|||+++.++...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~   54 (249)
T cd01853          12 AAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGE   54 (249)
T ss_pred             HHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence            3444455555555555555679999999999999999998753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK13695 putative NTPase; Provisional

Probab=97.14  E-value=0.00051  Score=48.63  Aligned_cols=23  Identities=39%  Similarity=0.731  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++|.|++|+||||+++.++..+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999988776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3uk6_A	368	Crystal Structure Of The Tip48 (Tip49b) Hexamer Len		5e-28
3uk6_A	368	Crystal Structure Of The Tip48 (Tip49b) Hexamer Len		1e-09
2xsz_D	378	The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr		3e-25
2xsz_D	378	The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr		1e-09
2c9o_A	456	3d Structure Of The Human Ruvb-Like Helicase Ruvbl1		2e-17
2c9o_A	456	3d Structure Of The Human Ruvb-Like Helicase Ruvbl1		7e-06
2xsz_A	367	The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr		3e-16
2xsz_A	367	The Dodecameric Human Ruvbl1:ruvbl2 Complex With Tr		2e-05
2cqa_A	95	Solution Structure Of Rsgi Ruh-039, A Fragment Of C		3e-11

>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer Length = 368

Iteration: 1
 Score =  120 bits (300), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/66 (86%), Positives = 64/66 (96%)
Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105
Query: 61  SEIYSL 66
           SEI+SL
Sbjct: 106 SEIFSL 111

>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer Length = 368

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161
           GT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR 
Sbjct: 234 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC 272

>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 378

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 2   VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS 61
           VGQL ARRAAGVVL  I+EGKIAGRA+L+AGQPGTGKTAIA G AQALGPDTPFT++AGS
Sbjct: 62  VGQLAARRAAGVVLEXIREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGS 121
Query: 62  EIYSL 66
           EI+SL
Sbjct: 122 EIFSL 126

>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 378

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRL 161
           GT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR 
Sbjct: 252 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRC 290

>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           +VGQ  AR A GV++ +IK  K+AGRA+LLAG PGTGKTA+A+ +AQ LG   PF  M G
Sbjct: 39  LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98
Query: 61  SEIYS 65
           SE+YS
Sbjct: 99  SEVYS 103

>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1 Length = 456

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 127 SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
           +SPHGIP+DLLDR++II T  Y  +E++ I+KIR
Sbjct: 345 TSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIR 378

>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 367

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 47/65 (72%)
Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           +VGQ  AR A GV++ +IK  K AGRA+LLAG PGTGKTA+A+ +AQ LG   PF    G
Sbjct: 53  LVGQENAREACGVIVELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVG 112
Query: 61  SEIYS 65
           SE+YS
Sbjct: 113 SEVYS 117

>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated Domains Ii Length = 367

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 127 SSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
           +SPHGIP+DLLDR+ II T  Y  +E + I+KIR
Sbjct: 256 TSPHGIPLDLLDRVXIIRTXLYTPQEXKQIIKIR 289

>pdb|2CQA|A Chain A, Solution Structure Of Rsgi Ruh-039, A Fragment Of C- Terminal Domain Of Ruvb-Like 2 From Human Cdna Length = 95

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 34/37 (91%)
Query: 86  QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI 122
           QI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++
Sbjct: 22  QIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESL 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	3e-34
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	8e-10
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	1e-21
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	3e-09
2cqa_A	95	RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP	6e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	7e-06
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	3e-05
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	4e-05
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	2e-04
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	2e-04
2r6a_A	454	DNAB helicase, replicative helicase; replication,	3e-04
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	4e-04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	4e-04
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	5e-04

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score =  123 bits (311), Expect = 3e-34
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 20/142 (14%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           +VGQ  AR A GV++ +IK  K+AGRA+LLAG PGTGKTA+A+ +AQ LG   PF  M G
Sbjct: 39  LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98

Query: 61  SEIYSLEMNKTE---------------EETEMIEGEVVEIQI---ERPATGLGSKV--GK 100
           SE+YS E+ KTE               E  E+ EGEV E+     E P  G G  +    
Sbjct: 99  SEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVI 158

Query: 101 LTMKTTEMETSYDLGAKMIEAI 122
           + +KT +      L   + E++
Sbjct: 159 IGLKTAKGTKQLKLDPSIFESL 180

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 55.8 bits (134), Expect = 8e-10
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query: 124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIR 160
              +SPHGIP+DLLDR++II T  Y  +E++ I+KIR
Sbjct: 342 EDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIR 378

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 88.8 bits (220), Expect = 1e-21
 Identities = 63/76 (82%), Positives = 72/76 (94%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
           MVGQL ARRAAGVVL MI+EGKIAGRA+L+AGQPGTGKTAIAMG+AQALGPDTPFT++AG
Sbjct: 46  MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105

Query: 61  SEIYSLEMNKTEEETE 76
           SEI+SLEM+KTE  T+
Sbjct: 106 SEIFSLEMSKTEALTQ 121

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 53.8 bits (129), Expect = 3e-09
 Identities = 23/41 (56%), Positives = 33/41 (80%)

Query: 123 GTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK 163
           GT+Y SPHGIPIDLLDR++I+ T PY +++ + IL+IR  +
Sbjct: 234 GTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274

>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14 Length = 95

 Score = 70.9 bits (174), Expect = 6e-17
 Identities = 42/50 (84%), Positives = 47/50 (94%)

Query: 73  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI 122
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++
Sbjct: 9   EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESL 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 21/76 (27%)

Query: 5   LQARRAAGVVL-GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 63
           L+ R A  V++ G+                 G+GKT +A                   +I
Sbjct: 145 LELRPAKNVLIDGV----------------LGSGKTWVA---LDVCL-SYKVQCKMDFKI 184

Query: 64  YSLEMNKTEEETEMIE 79
           + L +        ++E
Sbjct: 185 FWLNLKNCNSPETVLE 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 18/86 (20%)

Query: 103 MKTTEMETSYD-----------LGAKMIEAIGTAYSSPHGIPIDLLD----RMVIIPTQP 147
           +K  E                 L  K I    TA+++   I   L      +  I    P
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 148 YQDEEIQAILKIRLVKNERNEIYNHP 173
             +  + AIL   L K E N +    
Sbjct: 540 KYERLVNAILDF-LPKIEEN-LICSK 563

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 29  LLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEM 68
           LL G+ G GKTAIA GLA  +   D P   MA   IYSL++
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEV-MADCTIYSLDI 250

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 26  RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETE 76
            ++LL G P +GKTA+A  +A+    + PF  +   +     M    E  +
Sbjct: 65  VSVLLEGPPHSGKTALAAKIAEES--NFPFIKICSPDK----MIGFSETAK 109

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Length = 444

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 28  ILLAGQPGTGKTAIAMGLAQ--ALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEV 82
            ++A +P  GKTA A+ +AQ  AL             IYSLEM   +    M+  E  +
Sbjct: 203 NIIAARPAMGKTAFALTIAQNAALKEGVG------VGIYSLEMPAAQLTLRMMCSEARI 255

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 26  RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
           R ILL G PGTGKT IA  +A   G    F  + G EI S    ++E 
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES 284

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Length = 454

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 28  ILLAGQPGTGKTAIAMGLAQ--ALGPDTPFTSMAGSEIYSLEMNKTEEETEMI--EGEV 82
           I++A +P  GKTA A+ +AQ  A   +          I+SLEM+  +    M+  EG +
Sbjct: 206 IIVAARPSVGKTAFALNIAQNVATKTNEN------VAIFSLEMSAQQLVMRMLCAEGNI 258

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM 68
           K+  +  LL G PG GKT +A  +A       PF +MAG+E   +E+
Sbjct: 36 AKVP-KGALLLGPPGCGKTLLAKAVATEAQ--VPFLAMAGAEF--VEV 78

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 19  KEGKIAGRAILLAGQPGTGKTAIAMGLAQALG 50
           K+G    RA +L G PG GKT  A  +AQ LG
Sbjct: 71  KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 27 AILLAGQPGTGKTAIAMGLAQAL 49
          A+L+   PG G  A+   L++ L
Sbjct: 26 ALLIQALPGMGDDALIYALSRYL 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.9
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.88
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.88
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.88
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.88
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.86
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.82
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.81
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.79
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.79
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.79
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.78
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.77
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.77
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.77
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.76
3pvs_A	447	Replication-associated recombination protein A; ma	99.76
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.76
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.75
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.74
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.73
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.72
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.71
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.71
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.71
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.7
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.7
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.69
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.68
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.68
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.65
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.64
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.64
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.63
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.62
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.62
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.61
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.61
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.6
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.59
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.59
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.59
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.58
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.58
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.58
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.58
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.58
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.58
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.57
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.57
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.57
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.56
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.56
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.55
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.54
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.53
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.53
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.53
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.52
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.52
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.5
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.5
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.48
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.47
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.47
3bos_A	242	Putative DNA replication factor; P-loop containing	99.45
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.45
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.43
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.43
3co5_A	143	Putative two-component system transcriptional RES	99.39
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.39
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.38
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.38
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.36
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.35
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.28
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.26
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.26
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.25
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	99.13
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.98
3f8t_A	506	Predicted ATPase involved in replication control,	98.72
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.63
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	98.62
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.6
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.59
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.57
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.47
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.45
2qgz_A	308	Helicase loader, putative primosome component; str	98.45
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.38
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.28
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	98.27
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.25
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.25
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.17
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.17
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.16
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.12
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.11
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.1
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.1
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.09
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.09
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.08
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.07
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.06
1via_A	175	Shikimate kinase; structural genomics, transferase	98.05
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.04
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.04
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.0
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.0
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.0
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.0
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.99
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.98
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.98
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.98
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.98
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.97
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.97
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.96
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.96
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.96
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.94
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.94
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.94
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.94
2fna_A	357	Conserved hypothetical protein; structural genomic	97.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.93
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.93
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.93
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.92
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.92
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.91
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.9
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.9
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.89
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.87
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.86
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.86
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.86
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.86
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.85
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.83
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.83
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.81
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.81
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.8
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.79
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.78
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.78
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.77
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.76
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.75
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.74
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.73
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.73
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.72
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.72
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.72
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.71
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.7
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.69
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.69
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.69
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.68
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.68
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.68
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.66
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.65
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.65
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.62
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.61
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.6
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.6
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.6
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.59
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.59
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.56
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.55
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.55
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.53
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.53
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.53
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.52
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.49
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.48
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.48
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.47
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.47
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.46
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.46
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.45
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.44
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.44
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	97.43
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.43
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.43
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.42
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.42
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.41
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.41
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.41
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.41
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.41
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.39
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.39
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.38
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.38
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.37
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.36
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.36
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.36
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.36
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.35
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.35
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.34
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.34
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.32
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.32
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.31
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.29
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.28
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.27
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.27
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.26
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.26
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.25
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.25
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.24
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.24
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.24
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.23
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.2
3io5_A	333	Recombination and repair protein; storage dimer, i	97.2
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.2
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.2
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.19
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.19
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.18
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.18
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.16
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.16
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.14
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.14
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.13
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.12
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.12
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.12
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.11
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.11
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.08
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.08
2og2_A	359	Putative signal recognition particle receptor; nuc	97.07
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.07
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.05
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.02
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.02
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.02
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.01
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.0
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.99
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.98
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.98
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.98
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.97
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.97
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.97
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.97
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.96
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.94
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.94
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.94
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.93
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.93
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.91
1g6h_A	257	High-affinity branched-chain amino acid transport	96.9
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.89
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.89
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.89
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.88
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.88
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.87
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.87
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.86
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.86
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.86
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.85
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.84
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.84
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.84
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.83
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.83
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.83
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.83
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.82
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.82
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.82
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.79
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.79
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.79
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.79
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.78
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.78
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.77
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.76
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.76
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.76
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.75
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	96.75
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.74
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.73
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.73
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.72
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.71
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.7
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.7
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.67
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.67
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.67
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.65
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.65
2xxa_A	433	Signal recognition particle protein; protein trans	96.65
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.65
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.64
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.64
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.64
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.63
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.62
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.61
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.61
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.61
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.6
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.6
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.6
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.6
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.59
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.58
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.58
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.57
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.57
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.56
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.55
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	96.55
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.55
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.54
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.54
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.52
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.52
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.51
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.51
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.51
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.5
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.5
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.5
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.48
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.48
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.48
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.46
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.46
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.46
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.46
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.44
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.44
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.44
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.43
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.42
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.42
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.42
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.41
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.41
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.41
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.4
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.4
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.4
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.4
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.4
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.39
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.39
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.39
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.38
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.38
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.37
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.37
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.36
3ice_A	422	Transcription termination factor RHO; transcriptio	96.36
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.36
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.35
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.35
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.34
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.34
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.33
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.33
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.33
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.33
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.33
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.33
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.32
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.32
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.31
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.31
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.31
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.31
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.3
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.29
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	96.27
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	96.27
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.25
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.25
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.25
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.22
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.22
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.22
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.22
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.21
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.2
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.2
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.2
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.19
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.17
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.17
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.16
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.15
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.15
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.14
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.14
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.13
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.13
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.13
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.13
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.12
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.12
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.11
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.08
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.05
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.03
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.02
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.02
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.02
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.01
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.0
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.0
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.99
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.99
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.95
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.95
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.94
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.93
3b6e_A	216	Interferon-induced helicase C domain-containing P;	95.92
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	95.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.9

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.1e-23  Score=163.37  Aligned_cols=160  Identities=19%  Similarity=0.197  Sum_probs=116.8

Q ss_pred             CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+ +       +-|..+++++|||||||||||++|+++|.+++  .+|+.++++.+.+.++++.+
T Consensus       150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~sk~vGese  227 (405)
T 4b4t_J          150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD--CKFIRVSGAELVQKYIGEGS  227 (405)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT--CEEEEEEGGGGSCSSTTHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC--CCceEEEhHHhhccccchHH
Confidence            56899999888776654 2       23777789999999999999999999999999  56899999999998888776


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCC--ccce---eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGS--KVGK---LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~--~~~~---~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...|..++++|+|.++.....  ..+.   .....   ..++......++++  |+|| |++..+||++
T Consensus       228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v--IaAT-Nrpd~LDpAl  304 (405)
T 4b4t_J          228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI--IMAT-NRLDILDPAL  304 (405)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE--EEEE-SCSSSSCHHH
T ss_pred             HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE--Eecc-CChhhCCHhH
Confidence            2       22 334778888999988544311  1111   00111   11222223334444  5665 9999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++  || ..|+++.|+.++..+|++.++.+..
T Consensus       305 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~  336 (405)
T 4b4t_J          305 LRPGRIDRKIEFPPPSVAARAEILRIHSRKMN  336 (405)
T ss_dssp             HSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB
T ss_pred             cCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC
Confidence            97  99 8999999999999999998876543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9e-23  Score=160.41  Aligned_cols=160  Identities=21%  Similarity=0.208  Sum_probs=116.7

Q ss_pred             CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+ +       +-|..+++++|||||||||||++|+++|.+++  .+|+.++.+++.+.+++..+
T Consensus       184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~fi~v~~s~l~sk~vGese  261 (437)
T 4b4t_I          184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELIQKYLGDGP  261 (437)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CEEEEEESGGGCCSSSSHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CCEEEEEHHHhhhccCchHH
Confidence            56899999888776654 2       23666789999999999999999999999999  56889999999998888776


Q ss_pred             hh-------h-hhccCcEEEEEEeccCCCCCCc--cce----eEE--EeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 EE-------T-EMIEGEVVEIQIERPATGLGSK--VGK----LTM--KTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~~-------~-~~~~~~i~~~~id~~~~~~~~~--~~~----~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      ..       + ...|..++++|+|.++......  .+.    ..+  ....++......++++  |+|| |++..+||++
T Consensus       262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV--IaAT-Nrpd~LDpAL  338 (437)
T 4b4t_I          262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV--IMAT-NKIETLDPAL  338 (437)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE--EEEE-SCSTTCCTTS
T ss_pred             HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE--EEeC-CChhhcCHHH
Confidence            21       2 3357788999999885443111  110    000  0111222223334444  6666 9999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++  || ..|+++.|+.++..+|++.++.+..
T Consensus       339 lRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~  370 (437)
T 4b4t_I          339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMN  370 (437)
T ss_dssp             SCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC
T ss_pred             hcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC
Confidence            97  99 7899999999999999999886543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.4e-23  Score=162.11  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=113.7

Q ss_pred             CCchHHHHHHHHHHHHH--------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM--------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~--------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+        .+-|..+++++|||||||||||++|+++|.+++  .+|..++++.+.+.+++..+
T Consensus       183 igGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~f~~v~~s~l~~~~vGese  260 (434)
T 4b4t_M          183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--ATFLKLAAPQLVQMYIGEGA  260 (434)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCSSCSSHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CCEEEEehhhhhhcccchHH
Confidence            57899999887754332        234667789999999999999999999999999  56899999999988888766


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCCc--cce--e--EE--EeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGSK--VGK--L--TM--KTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~--~~~--~--~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...|..++++|+|.++....+.  .+.  .  .+  ....++......++++  |+|| |++..+||++
T Consensus       261 ~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV--IaaT-Nrp~~LD~Al  337 (434)
T 4b4t_M          261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV--LAAT-NRVDVLDPAL  337 (434)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE--EEEC-SSCCCCCTTT
T ss_pred             HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE--EEeC-CCchhcCHhH
Confidence            2       12 3347788888999874433111  110  0  00  0111222222233344  5566 9999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++  || ..|+++.|+.++..+|++.++.+.
T Consensus       338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~  368 (434)
T 4b4t_M          338 LRSGRLDRKIEFPLPSEDSRAQILQIHSRKM  368 (434)
T ss_dssp             CSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred             hcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence            87  99 889999999999999999887553

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.3e-22  Score=160.87  Aligned_cols=159  Identities=19%  Similarity=0.164  Sum_probs=115.1

Q ss_pred             CCchHHHHHHHHHHHHH--------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM--------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~--------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+        -+-|..+++++|||||||||||++|+++|.+++  .+|+.++++.+.+.+++..+
T Consensus       211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~fi~vs~s~L~sk~vGese  288 (467)
T 4b4t_H          211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--ATFIRVIGSELVQKYVGEGA  288 (467)
T ss_dssp             CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CEEEEEEGGGGCCCSSSHHH
T ss_pred             hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CCeEEEEhHHhhcccCCHHH
Confidence            57899999888765543        123667789999999999999999999999999  56899999999998888766


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCCc-cc-e---eEEEe---ccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGSK-VG-K---LTMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~-~~-~---~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...|..++++|+|.++....+. .+ .   .....   ..++......++++  |+|| |++..+++++
T Consensus       289 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV--IaAT-Nrpd~LDpAL  365 (467)
T 4b4t_H          289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV--MFAT-NRPNTLDPAL  365 (467)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE--EEEC-SCTTSBCHHH
T ss_pred             HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE--EeCC-CCcccCChhh
Confidence            2       22 3346788889999885443111 11 0   00001   11222222233444  5665 9999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++  || ..|+++.|+.++..+|++.++.+.
T Consensus       366 lRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~  396 (467)
T 4b4t_H          366 LRPGRIDRKVEFSLPDLEGRANIFRIHSKSM  396 (467)
T ss_dssp             HSTTTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred             hccccccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence            97  99 899999999999999999887654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.1e-22  Score=159.69  Aligned_cols=159  Identities=23%  Similarity=0.254  Sum_probs=114.8

Q ss_pred             CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+ +       +-|..+++++|||||||||||++|+++|.+++  .+|+.++++.+.+.+++..+
T Consensus       183 igGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~~~~v~~s~l~sk~~Gese  260 (437)
T 4b4t_L          183 IGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--ANFIFSPASGIVDKYIGESA  260 (437)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CEEEEEEGGGTCCSSSSHHH
T ss_pred             hCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehhhhccccchHHH
Confidence            56899999887766654 2       23667789999999999999999999999999  56889999999988888766


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCCcc----c--e--eEEEeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGSKV----G--K--LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~~----~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...|..++++|+|.++.......    .  .  +.-....++......++++  |+|| |++..+||+|
T Consensus       261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv--I~AT-Nrp~~LDpAl  337 (437)
T 4b4t_L          261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI--IMAT-NRPDTLDPAL  337 (437)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE--EEEE-SSTTSSCTTT
T ss_pred             HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE--EEec-CCchhhCHHH
Confidence            2       12 33467888899998854431111    0  0  0001112222233334444  6666 9999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++  || ..|+++.|+.++..+|++.++.+.
T Consensus       338 lRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~  368 (437)
T 4b4t_L          338 LRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV  368 (437)
T ss_dssp             TSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred             hCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence            86  58 889999999999999999887553

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.3e-22  Score=157.10  Aligned_cols=159  Identities=19%  Similarity=0.169  Sum_probs=113.2

Q ss_pred             CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+ +       +-|..+++++|||||||||||++|+++|.+++  .+|+.++.+.+.+.+++..+
T Consensus       174 igGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~~~~v~~~~l~~~~~Ge~e  251 (428)
T 4b4t_K          174 VGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AAFIRVNGSEFVHKYLGEGP  251 (428)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CEEEEEEGGGTCCSSCSHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEecchhhccccchhH
Confidence            57899999887765543 2       23777789999999999999999999999999  56889999998888887765


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCCc--cce---eEEE---eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGSK--VGK---LTMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~--~~~---~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...|..++++++|.++......  ...   ....   ...++......++++  |+|| |++..+||++
T Consensus       252 ~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v--I~aT-N~~~~LD~Al  328 (428)
T 4b4t_K          252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV--IMAT-NRADTLDPAL  328 (428)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE--EEEE-SCSSSCCHHH
T ss_pred             HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE--EEec-CChhhcChhh
Confidence            2       22 3346778888999874332110  000   0011   122233333344455  6666 9999999999


Q ss_pred             hc--ce-eeEecC-CCCHHHHHHHHHHHhchh
Q psy14616        137 LD--RM-VIIPTQ-PYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       137 ~s--R~-~~i~~~-~~~~~e~~~il~~~l~~~  164 (174)
                      ++  || ..|+|+ .|+.++...|++.++.+.
T Consensus       329 lRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~  360 (428)
T 4b4t_K          329 LRPGRLDRKIEFPSLRDRRERRLIFGTIASKM  360 (428)
T ss_dssp             HSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred             hcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            97  99 789996 678999999998877553

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.82  E-value=8.9e-20  Score=142.11  Aligned_cols=155  Identities=59%  Similarity=0.908  Sum_probs=105.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE-------   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-------   73 (174)
                      +||++.+++++..+...++.+..+++++||+||||||||++|+++|+.+++..++..+++..+.+.+++..+.       
T Consensus        46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (368)
T 3uk6_A           46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR  125 (368)
T ss_dssp             EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHH
Confidence            5899999999999999999999888999999999999999999999999987777777765544333222110       


Q ss_pred             -------------------------------------------------hh-h---------hccCcEEEEEEeccCCCC
Q psy14616         74 -------------------------------------------------ET-E---------MIEGEVVEIQIERPATGL   94 (174)
Q Consensus        74 -------------------------------------------------~~-~---------~~~~~i~~~~id~~~~~~   94 (174)
                                                                       .+ .         ..++.++++|+|.+....
T Consensus       126 ~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~  205 (368)
T 3uk6_A          126 SIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIES  205 (368)
T ss_dssp             SBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHH
T ss_pred             HHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHH
Confidence                                                             00 0         013466777877762110


Q ss_pred             --------CCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616         95 --------GSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus        95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                              +.....+.+....      ....++  .+++.|.+..+++++++||.++.|++|+.+++.++++.++..
T Consensus       206 ~~~L~~~le~~~~~~~ii~t~------~~~~~i--~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~  274 (368)
T 3uk6_A          206 FSFLNRALESDMAPVLIMATN------RGITRI--RGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE  274 (368)
T ss_dssp             HHHHHHHTTCTTCCEEEEEES------CSEEEC--BTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCCCeeeeecc------cceeee--eccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence                    0011111111110      011111  223335568899999999988999999999999999987654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.81  E-value=3.4e-20  Score=142.57  Aligned_cols=158  Identities=21%  Similarity=0.227  Sum_probs=105.6

Q ss_pred             CCchHHHHHHHHHHHHHH-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|++.+++.+..+....       +.+..+++++||+||||||||++|+++|+.++  .+++.+++..+.+.+.+....
T Consensus        20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~~~g~~~~   97 (322)
T 3eie_A           20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEK   97 (322)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CEEEEEEHHHHHTTTGGGHHH
T ss_pred             hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CCEEEEchHHHhhcccchHHH
Confidence            689999998877665332       23444568999999999999999999999998  457888887776666655441


Q ss_pred             -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEecc---chhhh-ccccccchhhhcccCCCCCCCHHhhcc
Q psy14616         74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTE---METSY-DLGAKMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~---~~~~~-~~~~~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                             .+ ...++.++++|+|.+....+.....  ..+....   +.... ...+.++  |+++ |.+..+++++++|
T Consensus        98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--i~at-n~~~~ld~al~~R  174 (322)
T 3eie_A           98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV--LGAT-NIPWQLDSAIRRR  174 (322)
T ss_dssp             HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE--EEEE-SCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE--EEec-CChhhCCHHHHcc
Confidence                   11 1234677888998884432111000  0000111   11111 1122333  5555 8889999999999


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      | ..++++.|+.++..+|++.++.+
T Consensus       175 f~~~i~~~~p~~~~r~~il~~~~~~  199 (322)
T 3eie_A          175 FERRIYIPLPDLAARTTMFEINVGD  199 (322)
T ss_dssp             CCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             cCeEEEeCCCCHHHHHHHHHHHhcc
Confidence            9 78999999999999999998754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.79  E-value=1.5e-19  Score=138.99  Aligned_cols=159  Identities=19%  Similarity=0.208  Sum_probs=104.6

Q ss_pred             CCchHHHHHHHHHHHHHHH-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIK-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|++++++.+......-.       .+..+++++||+||||||||++|+++|+.++. .++..+++..+.+.+.+..+.
T Consensus        14 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~~~~~i~~~~l~~~~~g~~~~   92 (322)
T 1xwi_A           14 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-STFFSISSSDLVSKWLGESEK   92 (322)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-CEEEEEECCSSCCSSCCSCHH
T ss_pred             hcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-CcEEEEEhHHHHhhhhhHHHH
Confidence            6899999988776554321       22345689999999999999999999999822 457778877776655554431


Q ss_pred             -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEeccchhhhc----cccccchhhhcccCCCCCCCHHhhcc
Q psy14616         74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTEMETSYD----LGAKMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                             .+ ...++.++++|+|.+..........  .......+.....    ..+.++  ++++ |.+..+++++++|
T Consensus        93 ~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v--I~at-n~~~~ld~al~rR  169 (322)
T 1xwi_A           93 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV--LGAT-NIPWVLDSAIRRR  169 (322)
T ss_dssp             HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE--EEEE-SCTTTSCHHHHHT
T ss_pred             HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE--EEec-CCcccCCHHHHhh
Confidence                   11 1234567778888874332111100  0111111111111    122333  5555 8999999999999


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      | ..+.++.|+.++..+|++.++.+
T Consensus       170 f~~~i~i~~P~~~~r~~il~~~l~~  194 (322)
T 1xwi_A          170 FEKRIYIPLPEPHARAAMFKLHLGT  194 (322)
T ss_dssp             CCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             cCeEEEeCCcCHHHHHHHHHHHHhc
Confidence            9 78999999999999999997754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.79  E-value=1.9e-18  Score=138.54  Aligned_cols=90  Identities=52%  Similarity=0.771  Sum_probs=73.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhh----
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETE----   76 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----   76 (174)
                      ++||+++++.+..+.+.++.|..+++++||+||||||||++|+++|+.++...+|+.++++.+.+.+.++.+...+    
T Consensus        39 iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  118 (456)
T 2c9o_A           39 LVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRR  118 (456)
T ss_dssp             EESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHHHHH
Confidence            5899999999999999999999888999999999999999999999999977889999988888776665542111    


Q ss_pred             ------hccCcEEEEEEecc
Q psy14616         77 ------MIEGEVVEIQIERP   90 (174)
Q Consensus        77 ------~~~~~i~~~~id~~   90 (174)
                            ..++.++++|+|.+
T Consensus       119 a~~~~~~~~~il~iDEid~l  138 (456)
T 2c9o_A          119 AIGLRIKETKEVYEGEVTEL  138 (456)
T ss_dssp             TEEEEEEEEEEEEEEEEEEE
T ss_pred             HHhhhhcCCcEEEEechhhc
Confidence                  12445666777765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.79  E-value=1e-19  Score=153.38  Aligned_cols=159  Identities=23%  Similarity=0.253  Sum_probs=113.0

Q ss_pred             CCchHHHHHHHHHHHHH-HHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-IKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|..+..+ ++.       |..+++++|||||||||||++|+++|.+++  .+++.+++.++.+.+.++.+
T Consensus       206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg--~~~~~v~~~~l~sk~~gese  283 (806)
T 3cf2_A          206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESE  283 (806)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT--CEEEEEEHHHHHSSCTTHHH
T ss_pred             hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CeEEEEEhHHhhcccchHHH
Confidence            46888888887776655 332       445679999999999999999999999998  56888998888887777665


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCCccce--eEEE---eccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGSKVGK--LTMK---TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-  138 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-  138 (174)
                             ..+ ...|..++++|+|.+....+...+.  ....   ...+.......++++  |++| |++..+++++++ 
T Consensus       284 ~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V--IaaT-N~~d~LD~ALrR~  360 (806)
T 3cf2_A          284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV--MAAT-NRPNSIDPALRRF  360 (806)
T ss_dssp             HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE--EEEC-SSTTTSCTTTTST
T ss_pred             HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE--EEec-CChhhcCHHHhCC
Confidence                   222 2346678888999885443211111  0111   112222223334444  5565 899999999998 


Q ss_pred             -ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        139 -RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       139 -R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       || ..|+++.|+.++..+|++.++.+.
T Consensus       361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~  388 (806)
T 3cf2_A          361 GRFDREVDIGIPDATGRLEILQIHTKNM  388 (806)
T ss_dssp             TSSCEEEECCCCCHHHHHHHHHHTCSSS
T ss_pred             cccceEEecCCCCHHHHHHHHHHHhcCC
Confidence             99 889999999999999999877543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.78  E-value=2.7e-18  Score=140.31  Aligned_cols=160  Identities=23%  Similarity=0.329  Sum_probs=100.2

Q ss_pred             CCchHHHHHHHHHHHHHHH-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch---------hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIK-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS---------LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------~~~~~   70 (174)
                      ++|++++++.+......-. +...++.+++|+||||||||++|+++|..++.  ++..++++....         .+++.
T Consensus        83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~~~~~~~~g~~~~~ig~  160 (543)
T 3m6a_A           83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGVRDESEIRGHRRTYVGA  160 (543)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-----------------
T ss_pred             hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEecccchhhhhhhHHHHHhcc
Confidence            5899999988765443222 23335679999999999999999999999974  355555543221         11111


Q ss_pred             hh-------hhhhhccCcEEEEEEeccCCCCCCcc-----------ceeEEEeccchhhhccccccchhhhcccCCCCCC
Q psy14616         71 TE-------EETEMIEGEVVEIQIERPATGLGSKV-----------GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGI  132 (174)
Q Consensus        71 ~~-------~~~~~~~~~i~~~~id~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  132 (174)
                      ..       ..+....+.++++|+|++........           ++..|.........++.+.++  |+|+ |+...+
T Consensus       161 ~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i--I~tt-N~~~~l  237 (543)
T 3m6a_A          161 MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF--IATA-NNLATI  237 (543)
T ss_dssp             ---CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE--EEEC-SSTTTS
T ss_pred             CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE--Eecc-CccccC
Confidence            11       11112334667788988743321001           111222222333334455555  5565 899999


Q ss_pred             CHHhhcceeeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        133 PIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       133 ~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      +++|++||.++++++|+.++..+|++.++.++.
T Consensus       238 ~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~  270 (543)
T 3m6a_A          238 PGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQ  270 (543)
T ss_dssp             CHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHH
T ss_pred             CHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=129.68  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=99.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC-------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK-------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~-------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|++++++.+..+...+....       .++.+++|+||||||||++|+++|+.++.  +++.+++..+.....+... 
T Consensus         8 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~   85 (262)
T 2qz4_A            8 VAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--PFLAMAGAEFVEVIGGLGAA   85 (262)
T ss_dssp             SCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--CEEEEETTTTSSSSTTHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHHHhhccChhHH
Confidence            6899999999988887765432       34579999999999999999999999984  5777777666543333222 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCc--------cceeEEEeccchhhhc---cccccchhhhcccCCCCCCCH
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSK--------VGKLTMKTTEMETSYD---LGAKMIEAIGTAYSSPHGIPI  134 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~  134 (174)
                            ..+ ...++.++++|+|.+.......        .+..  ....+.....   ..+.++  ++++ |.+..+++
T Consensus        86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~--l~~ll~~~~~~~~~~~~~v--i~~t-n~~~~ld~  160 (262)
T 2qz4_A           86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQT--LNQLLVEMDGMGTTDHVIV--LAST-NRADILDG  160 (262)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECC-------------------CHH--HHHHHHHHHTCCTTCCEEE--EEEE-SCGGGGGS
T ss_pred             HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHH--HHHHHHHhhCcCCCCCEEE--EecC-CChhhcCH
Confidence                  111 1124567788998874332100        0000  0000111111   122333  5555 78888999


Q ss_pred             Hhhc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        135 DLLD--RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       135 ~l~s--R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++++  || ..++++.|+.++..++++.++.+
T Consensus       161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~  192 (262)
T 2qz4_A          161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKS  192 (262)
T ss_dssp             GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence            9998  99 88999999999999999988754

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.77  E-value=5.4e-19  Score=141.29  Aligned_cols=158  Identities=19%  Similarity=0.213  Sum_probs=98.1

Q ss_pred             CCchHHHHHHHHHHHHHH-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |+|++.+++.+......-       ..+..+++++||+||||||||++|+++|..+ +  .+++.+++..+.+.+.+..+
T Consensus       136 i~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--~~~~~v~~~~l~~~~~g~~~  213 (444)
T 2zan_A          136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--STFFSISSSDLVSKWLGESE  213 (444)
T ss_dssp             SCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS--SEEEEECCC---------CC
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeHHHHHhhhcchHH
Confidence            689999997776655221       1233456899999999999999999999998 4  45777887777665554433


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCCccc--eeEEEeccchhhhc----cccccchhhhcccCCCCCCCHHhhc
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGSKVG--KLTMKTTEMETSYD----LGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                             ..+ ...++.++++|+|.+.........  ...+....+.....    ..+.++  |+++ |.+..+++++++
T Consensus       214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v--I~at-n~~~~ld~al~r  290 (444)
T 2zan_A          214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV--LGAT-NIPWVLDSAIRR  290 (444)
T ss_dssp             CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE--EEEE-SCGGGSCHHHHT
T ss_pred             HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE--EecC-CCccccCHHHHh
Confidence                   111 123456777788877433211100  00111111111111    123333  5555 888999999999


Q ss_pred             ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        139 RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      || .++.++.|+.++...|++.++.+
T Consensus       291 Rf~~~i~i~~P~~~~r~~il~~~l~~  316 (444)
T 2zan_A          291 RFEKRIYIPLPEAHARAAMFRLHLGS  316 (444)
T ss_dssp             TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             hcceEEEeCCcCHHHHHHHHHHHHhc
Confidence            99 78999999999999999998744

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.77  E-value=3.4e-19  Score=138.69  Aligned_cols=158  Identities=20%  Similarity=0.222  Sum_probs=100.9

Q ss_pred             CCchHHHHHHHHHHHHHH-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|++.+++.+.......       +.+..+++++||+||||||||++|+++|+.++  .+++.+++..+.+.+.+..+.
T Consensus        53 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~v~~~~l~~~~~g~~~~  130 (355)
T 2qp9_X           53 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--STFFSVSSSDLVSKWMGESEK  130 (355)
T ss_dssp             SCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CEEEEEEHHHHHSCC---CHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEEEeeHHHHhhhhcchHHH
Confidence            689999997777655332       12334567999999999999999999999998  457777777665554444331


Q ss_pred             -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEecc---chhhhc-cccccchhhhcccCCCCCCCHHhhcc
Q psy14616         74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTE---METSYD-LGAKMIEAIGTAYSSPHGIPIDLLDR  139 (174)
Q Consensus        74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~---~~~~~~-~~~~~~~~i~~~~~~~~~l~~~l~sR  139 (174)
                             .+ ...++.++++|+|.+....+.....  ..+....   +..... ..+.++  |+++ |.+..+++++++|
T Consensus       131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--I~at-n~~~~ld~al~rR  207 (355)
T 2qp9_X          131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV--LGAT-NIPWQLDSAIRRR  207 (355)
T ss_dssp             HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE--EEEE-SCGGGSCHHHHHT
T ss_pred             HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE--Eeec-CCcccCCHHHHcc
Confidence                   11 1135567888998874332111000  0000111   111111 122333  5555 8889999999999


Q ss_pred             e-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        140 M-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       140 ~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      | ..+.++.|+.++..+|++.++.+
T Consensus       208 f~~~i~i~~P~~~~r~~il~~~l~~  232 (355)
T 2qp9_X          208 FERRIYIPLPDLAARTTMFEINVGD  232 (355)
T ss_dssp             CCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             cCEEEEeCCcCHHHHHHHHHHHHhh
Confidence            9 88999999999999999988754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.76  E-value=5.2e-19  Score=134.80  Aligned_cols=159  Identities=23%  Similarity=0.314  Sum_probs=104.7

Q ss_pred             CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |+|++.+++.+..+....        ..|..++++++|+||||||||++|+++|..++  .+++.+++..+.+...+...
T Consensus        17 i~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l~~~~~g~~~   94 (301)
T 3cf0_A           17 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESE   94 (301)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHHHHHHHTTCT
T ss_pred             hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHHHhhhcCchH
Confidence            689999998887766542        23455678999999999999999999999997  55788887776655554433


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCC----Cccce-eEEEec---cchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLG----SKVGK-LTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~----~~~~~-~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                             +.+ ...++.++++|+|.+....+    +..+. ......   .+.......+..+  |+++ |.+..+++++
T Consensus        95 ~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v--i~at-n~~~~ld~al  171 (301)
T 3cf0_A           95 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI--IGAT-NRPDIIDPAI  171 (301)
T ss_dssp             THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE--EEEE-SCGGGSCGGG
T ss_pred             HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE--EEec-CCccccChHH
Confidence                   112 22345677778886622110    00000 000000   1111111223333  5565 8888999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++  || ..++++.|+.++..+|++.++.+.
T Consensus       172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~  202 (301)
T 3cf0_A          172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKS  202 (301)
T ss_dssp             GSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred             hcCCccceEEecCCcCHHHHHHHHHHHHccC
Confidence            98  99 789999999999999999887543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.76  E-value=1.9e-18  Score=138.05  Aligned_cols=148  Identities=18%  Similarity=0.199  Sum_probs=99.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhh---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEM---   77 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (174)
                      +|||++++.....+...++.+..  ++++|+||||||||++|+++|+.+++  ++..+++......++......+..   
T Consensus        28 ivGq~~~~~~~~~L~~~i~~~~~--~~vLL~GppGtGKTtlAr~ia~~~~~--~f~~l~a~~~~~~~ir~~~~~a~~~~~  103 (447)
T 3pvs_A           28 YIGQQHLLAAGKPLPRAIEAGHL--HSMILWGPPGTGKTTLAEVIARYANA--DVERISAVTSGVKEIREAIERARQNRN  103 (447)
T ss_dssp             CCSCHHHHSTTSHHHHHHHHTCC--CEEEEECSTTSSHHHHHHHHHHHTTC--EEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHhchHHHHHHHHcCCC--cEEEEECCCCCcHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence            68999999666677777788876  59999999999999999999999984  466776654433333333222211   


Q ss_pred             --ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHHHHH
Q psy14616         78 --IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQA  155 (174)
Q Consensus        78 --~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~  155 (174)
                        ..+.++++|+|.+ +.   ..+...      ....+.....+ ..+|+.|....++++++|||.++.|.+++.+++.+
T Consensus       104 ~~~~~iLfIDEI~~l-~~---~~q~~L------L~~le~~~v~l-I~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~  172 (447)
T 3pvs_A          104 AGRRTILFVDEVHRF-NK---SQQDAF------LPHIEDGTITF-IGATTENPSFELNSALLSRARVYLLKSLSTEDIEQ  172 (447)
T ss_dssp             TTCCEEEEEETTTCC----------CC------HHHHHTTSCEE-EEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHH
T ss_pred             cCCCcEEEEeChhhh-CH---HHHHHH------HHHHhcCceEE-EecCCCCcccccCHHHhCceeEEeeCCcCHHHHHH
Confidence              1334566677666 33   222211      11112233333 13444455578999999999999999999999999


Q ss_pred             HHHHHhch
Q psy14616        156 ILKIRLVK  163 (174)
Q Consensus       156 il~~~l~~  163 (174)
                      ++++.+.+
T Consensus       173 il~~~l~~  180 (447)
T 3pvs_A          173 VLTQAMED  180 (447)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.76  E-value=3.4e-20  Score=156.20  Aligned_cols=160  Identities=23%  Similarity=0.297  Sum_probs=105.6

Q ss_pred             CCchHHHHHHHHHHHHHH--------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI--------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~--------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.|.....+.        +.|..+++++|||||||||||++|+++|.+++  .+|+.++.+++.+.++++.+
T Consensus       479 iggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~f~~v~~~~l~s~~vGese  556 (806)
T 3cf2_A          479 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESE  556 (806)
T ss_dssp             CCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CEEEECCHHHHHTTTCSSCH
T ss_pred             hCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--CceEEeccchhhccccchHH
Confidence            467899997766554332        22555678999999999999999999999998  56889999999998888876


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCC----ccc-eeEEEecc---chhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGS----KVG-KLTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~----~~~-~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                             +.+ ...|+.++++|+|.+....+.    +.+ .-......   ++......++++  +++| |++..+++++
T Consensus       557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~v--i~aT-N~p~~lD~Al  633 (806)
T 3cf2_A          557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI--IGAT-NRPDIIDPAI  633 (806)
T ss_dssp             HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEE--ECC--CCSSSSCHHH
T ss_pred             HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEE--EEeC-CCchhCCHhH
Confidence                   223 234677888899988544311    111 11111222   222222233333  5555 9999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      ++  || ..|+++.|+.++..+|++.++.+..
T Consensus       634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~  665 (806)
T 3cf2_A          634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSP  665 (806)
T ss_dssp             HSTTTSCCEEEC-----CHHHHTTTTTSSCC-
T ss_pred             cCCCcceEEEEECCcCHHHHHHHHHHHhcCCC
Confidence            98  99 8899999999999999998876543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.75  E-value=3.2e-18  Score=134.68  Aligned_cols=158  Identities=20%  Similarity=0.234  Sum_probs=98.1

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|++.+++.+..+......       ...+++++||+||||||||++|+++|+.++  .+++.+++..+...+.+... 
T Consensus       117 iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~~~~~v~~~~l~~~~~g~~~~  194 (389)
T 3vfd_A          117 IAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--ATFFNISAASLTSKYVGEGEK  194 (389)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--CEEEEECSCCC-------CHH
T ss_pred             hCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--CcEEEeeHHHhhccccchHHH
Confidence            68999999877766544322       112457999999999999999999999998  45888888877665554433 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCccce--eEEEecc---chhhhcc--ccccchhhhcccCCCCCCCHHhhc
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTE---METSYDL--GAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~---~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                            ..+ ...++.++++|+|.++.........  ..+....   +......  .+.++  |+++ |.+..+++++++
T Consensus       195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v--I~at-n~~~~l~~~l~~  271 (389)
T 3vfd_A          195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV--MGAT-NRPQELDEAVLR  271 (389)
T ss_dssp             HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE--EEEE-SCGGGCCHHHHT
T ss_pred             HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE--EEec-CCchhcCHHHHc
Confidence                  112 1224567788888874332111000  0000001   1111111  12233  5565 888999999999


Q ss_pred             ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        139 RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      || .++.++.|+.++..++++..+.+
T Consensus       272 R~~~~i~i~~p~~~~r~~il~~~~~~  297 (389)
T 3vfd_A          272 RFIKRVYVSLPNEETRLLLLKNLLCK  297 (389)
T ss_dssp             TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CcceEEEcCCcCHHHHHHHHHHHHHh
Confidence            99 68999999999999999987644

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.74  E-value=4e-18  Score=128.52  Aligned_cols=158  Identities=25%  Similarity=0.286  Sum_probs=102.5

Q ss_pred             CCchHHHHHHHHHHHHHHHh--------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKE--------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~--------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      ++|++.+++.+..+......        |..++.++||+||||||||++|+++|+.++  .++..+++..+.....+...
T Consensus        19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~--~~~~~v~~~~~~~~~~~~~~   96 (285)
T 3h4m_A           19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN--ATFIRVVGSELVKKFIGEGA   96 (285)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT--CEEEEEEGGGGCCCSTTHHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEEEEehHHHHHhccchHH
Confidence            68999999887766544321        234568999999999999999999999998  45777777766655544433


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCC------cc-ceeEEE-eccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGS------KV-GKLTMK-TTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~------~~-~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      .       .+ ...++.++++|+|.+.....+      .. +...+. ...+.......+..+  |+++ |.+..+++++
T Consensus        97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v--I~tt-n~~~~l~~~l  173 (285)
T 3h4m_A           97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI--IGAT-NRPDILDPAI  173 (285)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE--EEEC-SCGGGBCHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE--EEeC-CCchhcCHHH
Confidence            1       11 112346777788877332211      00 010000 000010111123333  5565 8889999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++  || .++.++.|+.++..++++.++..
T Consensus       174 ~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~  203 (285)
T 3h4m_A          174 LRPGRFDRIIEVPAPDEKGRLEILKIHTRK  203 (285)
T ss_dssp             HSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             cCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence            98  99 68999999999999999987654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.74  E-value=2.5e-18  Score=130.93  Aligned_cols=159  Identities=15%  Similarity=0.143  Sum_probs=99.2

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------c---CcCCceEEEEcCCCCcHHHHHHHHHHHhCC-----CCCeeeecccccch
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------G---KIAGRAILLAGQPGTGKTAIAMGLAQALGP-----DTPFTSMAGSEIYS   65 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g---~~~~~~~ll~GppG~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~   65 (174)
                      |+|++.+++.+..+......       |   ..++.++||+||||||||++|+++|+.++.     ..+++.+++..+.+
T Consensus        33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~  112 (309)
T 3syl_A           33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG  112 (309)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred             ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence            68999999988877665431       1   233568999999999999999999998843     23577777776655


Q ss_pred             hhhhhhhhh-h----hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCC-----CCCC
Q psy14616         66 LEMNKTEEE-T----EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSP-----HGIP  133 (174)
Q Consensus        66 ~~~~~~~~~-~----~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-----~~l~  133 (174)
                      ...+..... .    ...++.++++|+|.+............... .+....+..  +..+  |+++ +..     ..++
T Consensus       113 ~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~-~Ll~~l~~~~~~~~~--i~~~-~~~~~~~~~~~~  188 (309)
T 3syl_A          113 QYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIE-ILLQVMENNRDDLVV--ILAG-YADRMENFFQSN  188 (309)
T ss_dssp             SSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHH-HHHHHHHHCTTTCEE--EEEE-CHHHHHHHHHHS
T ss_pred             hcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHH-HHHHHHhcCCCCEEE--EEeC-ChHHHHHHHhhC
Confidence            444433211 1    123566777888887433210000000000 011111111  2233  4454 222     1357


Q ss_pred             HHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      |+|++|| .+++|++|+.+++.++++.++.+
T Consensus       189 ~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~  219 (309)
T 3syl_A          189 PGFRSRIAHHIEFPDYSDEELFEIAGHMLDD  219 (309)
T ss_dssp             TTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence            9999999 99999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.73  E-value=1.1e-17  Score=126.82  Aligned_cols=158  Identities=18%  Similarity=0.214  Sum_probs=100.4

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|++.+++.+.........       ...++++++|+||||||||++|+++|+.++  .++..+++..+...+.+....
T Consensus        23 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~~~~~~~~  100 (297)
T 3b9p_A           23 IAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--ATFLNISAASLTSKYVGDGEK  100 (297)
T ss_dssp             SCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--CEEEEEESTTTSSSSCSCHHH
T ss_pred             hCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CCeEEeeHHHHhhcccchHHH
Confidence            68999999877766543221       112458999999999999999999999997  457777877666544443321


Q ss_pred             -------hh-hhccCcEEEEEEeccCCCCCCccce--eEEEeccchhhhcc------ccccchhhhcccCCCCCCCHHhh
Q psy14616         74 -------ET-EMIEGEVVEIQIERPATGLGSKVGK--LTMKTTEMETSYDL------GAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        74 -------~~-~~~~~~i~~~~id~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                             .+ ...++.++++|+|.+..........  .......+......      .+.++  ++++ |.+..++++++
T Consensus       101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v--i~~t-n~~~~l~~~l~  177 (297)
T 3b9p_A          101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV--LAAT-NRPQELDEAAL  177 (297)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE--EEEE-SCGGGBCHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE--Eeec-CChhhCCHHHH
Confidence                   11 1234567778888874432110000  00000000011111      12233  5555 78889999999


Q ss_pred             cce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        138 DRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       138 sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +|| ..+.++.|+.++...+++..+.+
T Consensus       178 ~R~~~~i~~~~p~~~~r~~il~~~~~~  204 (297)
T 3b9p_A          178 RRFTKRVYVSLPDEQTRELLLNRLLQK  204 (297)
T ss_dssp             HHCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred             hhCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence            999 78999999999999999887644

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.72  E-value=2.4e-17  Score=132.32  Aligned_cols=159  Identities=23%  Similarity=0.281  Sum_probs=105.1

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|++++++.+..+...++.       |...+++++|+||||||||++|+++|..++  .+|..+++.++.....+... 
T Consensus        18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~f~~is~~~~~~~~~g~~~~   95 (476)
T 2ce7_A           18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VPFFHISGSDFVELFVGVGAA   95 (476)
T ss_dssp             CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGTTTCCTTHHHH
T ss_pred             hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCeeeCCHHHHHHHHhcccHH
Confidence            68999999998888777653       233457899999999999999999999998  56888888777665544322 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCc------c--ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSK------V--GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            ..+ ...|+.++++|+|.+....+..      .  +.+.-....++......+.++  |+++ |++..++++++
T Consensus        96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV--IaaT-n~~~~Ld~all  172 (476)
T 2ce7_A           96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV--MAAT-NRPDILDPALL  172 (476)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE--EEEE-SCGGGSCGGGG
T ss_pred             HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE--EEec-CChhhhchhhc
Confidence                  112 1235567788888874332110      0  000000001111111122333  5555 88888999998


Q ss_pred             c--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        138 D--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      +  || ..+.++.|+.++..+|++.++.+.
T Consensus       173 R~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~  202 (476)
T 2ce7_A          173 RPGRFDKKIVVDPPDMLGRKKILEIHTRNK  202 (476)
T ss_dssp             STTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred             ccCcceeEeecCCCCHHHHHHHHHHHHHhC
Confidence            6  99 689999999999999998877543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.71  E-value=1.8e-17  Score=123.30  Aligned_cols=158  Identities=19%  Similarity=0.282  Sum_probs=100.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|++.+++.+..+...+...       ...+++++|+||||||||++|+++|..++  .+++.+++..+.....+... 
T Consensus        14 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~~i~~~~~~~~~~~~~~~   91 (257)
T 1lv7_A           14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMFVGVGAS   91 (257)
T ss_dssp             SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEECSCSSTTSCCCCCHH
T ss_pred             hcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CCEEEEeHHHHHHHhhhhhHH
Confidence            689999999988877766532       22357899999999999999999999997  45777777666544333221 


Q ss_pred             ------hhhh-hccCcEEEEEEeccCCCCCCcc--ce---eEEEecc---chhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EETE-MIEGEVVEIQIERPATGLGSKV--GK---LTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~~-~~~~~i~~~~id~~~~~~~~~~--~~---~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            +.+. ..++.++++++|.+....+...  +.   .......   ++......+.++  |+++ |.+..++++++
T Consensus        92 ~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v--I~~t-n~~~~l~~~l~  168 (257)
T 1lv7_A           92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV--IAAT-NRPDVLDPALL  168 (257)
T ss_dssp             HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE--EEEE-SCTTTSCGGGG
T ss_pred             HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE--EEee-CCchhCCHHHc
Confidence                  1121 1234566667776633221100  00   0000000   111111122333  5555 78889999999


Q ss_pred             c--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        138 D--RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       138 s--R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +  || ..+.++.|+.++..++++.++.+
T Consensus       169 r~~rf~~~i~i~~P~~~~r~~il~~~~~~  197 (257)
T 1lv7_A          169 RPGRFDRQVVVGLPDVRGREQILKVHMRR  197 (257)
T ss_dssp             STTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence            7  99 78999999999999999887643

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=129.88  Aligned_cols=158  Identities=19%  Similarity=0.172  Sum_probs=101.4

Q ss_pred             CCchHHHHHHHHHHHHHH-Hh------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI-KE------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~-~~------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|++.+++.+....... ..      ...+++++||+||||||||++|+++|+.++  .+++.+++..+...+.+....
T Consensus        86 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~~~~i~~~~l~~~~~g~~~~  163 (357)
T 3d8b_A           86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--ATFFSISASSLTSKWVGEGEK  163 (357)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--CEEEEEEGGGGCCSSTTHHHH
T ss_pred             hCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--CeEEEEehHHhhccccchHHH
Confidence            689999997777665431 11      123458999999999999999999999997  457888887776655444331


Q ss_pred             -------hhh-hccCcEEEEEEeccCCCCCCccc--eeEEEeccchhhhc-----cccccchhhhcccCCCCCCCHHhhc
Q psy14616         74 -------ETE-MIEGEVVEIQIERPATGLGSKVG--KLTMKTTEMETSYD-----LGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        74 -------~~~-~~~~~i~~~~id~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                             .+. ..++.++++|+|.+.........  ........+.....     ..+.++  |+++ |.+..+++++++
T Consensus       164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~v--I~at-n~~~~l~~~l~~  240 (357)
T 3d8b_A          164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILV--VGAT-NRPQEIDEAARR  240 (357)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEE--EEEE-SCGGGBCHHHHT
T ss_pred             HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEE--EEec-CChhhCCHHHHh
Confidence                   111 12456777888877433211000  00000011111111     112333  5565 888899999999


Q ss_pred             ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        139 RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      || ..+.++.|+.++..++++..+..
T Consensus       241 Rf~~~i~i~~p~~~~r~~il~~~~~~  266 (357)
T 3d8b_A          241 RLVKRLYIPLPEASARKQIVINLMSK  266 (357)
T ss_dssp             TCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             hCceEEEeCCcCHHHHHHHHHHHHhh
Confidence            99 68899999999999999887643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.71  E-value=2.6e-17  Score=126.94  Aligned_cols=156  Identities=19%  Similarity=0.244  Sum_probs=98.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-hh-c
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-EM-I   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~   78 (174)
                      ++|++.+++.+..+....+....+..++||+||||||||++|+++|+.++..  ++.+++.....  .+...... .. .
T Consensus        31 iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~  106 (338)
T 3pfi_A           31 YIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN--IKTTAAPMIEK--SGDLAAILTNLSE  106 (338)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC--EEEEEGGGCCS--HHHHHHHHHTCCT
T ss_pred             hCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEecchhccc--hhHHHHHHHhccC
Confidence            6899999988888777666544455799999999999999999999999844  66666654321  11111111 11 2


Q ss_pred             cCcEEEEEEeccCCCCCC------ccceeEEE--ecc--chhhhccccccchhhhcccCCCCCCCHHhhcce-eeEecCC
Q psy14616         79 EGEVVEIQIERPATGLGS------KVGKLTMK--TTE--METSYDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQP  147 (174)
Q Consensus        79 ~~~i~~~~id~~~~~~~~------~~~~~~~~--~~~--~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~  147 (174)
                      .+.++++|+|.+......      +.......  ...  .....+.++..+  |+++ |....+++++++|| .++.+++
T Consensus       107 ~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~at-n~~~~l~~~L~~R~~~~i~l~~  183 (338)
T 3pfi_A          107 GDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL--IGAT-TRAGMLSNPLRDRFGMQFRLEF  183 (338)
T ss_dssp             TCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE--EEEE-SCGGGSCHHHHTTCSEEEECCC
T ss_pred             CCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE--EEeC-CCccccCHHHHhhcCEEeeCCC
Confidence            345677788876211000      00000000  000  001112222333  5565 67778999999999 8999999


Q ss_pred             CCHHHHHHHHHHHhch
Q psy14616        148 YQDEEIQAILKIRLVK  163 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~  163 (174)
                      |+.+++.++++.....
T Consensus       184 ~~~~e~~~il~~~~~~  199 (338)
T 3pfi_A          184 YKDSELALILQKAALK  199 (338)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999987643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.70  E-value=7.5e-18  Score=126.00  Aligned_cols=158  Identities=20%  Similarity=0.274  Sum_probs=98.6

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      ++|++.+++.+..+...+..       +...+++++|+||||||||++|+++|+.++.  +++.+++..+.....+... 
T Consensus        13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~~v~~~~~~~~~~~~~~~   90 (268)
T 2r62_A           13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFFSMGGSSFIEMFVGLGAS   90 (268)
T ss_dssp             SSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCCCCCSCTTTTSCSSSCSS
T ss_pred             hCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEEEechHHHHHhhcchHHH
Confidence            68999999888877765542       3334578999999999999999999999984  4566666555443322211 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCc---cce---eEEEeccchhhhcc----ccccchhhhcccCCCCCCCHH
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSK---VGK---LTMKTTEMETSYDL----GAKMIEAIGTAYSSPHGIPID  135 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~---~~~---~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~l~~~  135 (174)
                            ..+ ...++.++++|+|.+.......   ...   .......+......    .+.++  ++++ |.+..++++
T Consensus        91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--i~tt-n~~~~ld~~  167 (268)
T 2r62_A           91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV--LAAT-NRPEILDPA  167 (268)
T ss_dssp             SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE--EECB-SCCTTSCGG
T ss_pred             HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE--EEec-CCchhcCHh
Confidence                  111 1234667778888873321000   000   00000001111111    11223  5555 888889999


Q ss_pred             hhc--ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        136 LLD--RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       136 l~s--R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +++  || ..++++.|+.++..++++.++.+
T Consensus       168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~  198 (268)
T 2r62_A          168 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKG  198 (268)
T ss_dssp             GGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred             HcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence            998  88 78999999999999999887643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.70  E-value=2.3e-17  Score=133.09  Aligned_cols=158  Identities=22%  Similarity=0.238  Sum_probs=105.1

Q ss_pred             CCchHHHHHHHHHHHHHHH--------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIK--------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~--------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |+|++.+++.+..+.....        -|..++.++||+||||||||++|+++|+.++  .+|+.+++..+.+...+...
T Consensus       206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~vn~~~l~~~~~g~~~  283 (489)
T 3hu3_A          206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESE  283 (489)
T ss_dssp             CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--SEEEEEEHHHHHTSCTTHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--CCEEEEEchHhhhhhcchhH
Confidence            5899999987776665431        1344568999999999999999999999997  56888888777665554443


Q ss_pred             h-------hh-hhccCcEEEEEEeccCCCCCCcccee--EEEe---ccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616         73 E-------ET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKT---TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-  138 (174)
Q Consensus        73 ~-------~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-  138 (174)
                      .       .+ ...++.++++|+|.+....+...+..  .+..   ..+.......+..+  |+++ |++..+++++++ 
T Consensus       284 ~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v--IaaT-n~~~~Ld~al~r~  360 (489)
T 3hu3_A          284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV--MAAT-NRPNSIDPALRRF  360 (489)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE--EEEE-SCGGGBCGGGGST
T ss_pred             HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE--EEec-CCccccCHHHhCC
Confidence            1       11 12345778888888744321111100  0000   01111111123333  5555 888889999998 


Q ss_pred             -ce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        139 -RM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       139 -R~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                       || ..++++.|+.++..++++.++..
T Consensus       361 gRf~~~i~i~~P~~~eR~~IL~~~~~~  387 (489)
T 3hu3_A          361 GRFDREVDIGIPDATGRLEILQIHTKN  387 (489)
T ss_dssp             TSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred             CcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence             88 77999999999999999987754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.69  E-value=4.4e-17  Score=123.70  Aligned_cols=134  Identities=14%  Similarity=0.053  Sum_probs=78.8

Q ss_pred             cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-------hhh-----hhccCcEEEEEEecc
Q psy14616         23 IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-------EET-----EMIEGEVVEIQIERP   90 (174)
Q Consensus        23 ~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~i~~~~id~~   90 (174)
                      .++.++||+||||||||++|+++|+.++  .+++.++++.+.+.+.+...       ..+     ...++.++++|+|++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~  111 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG  111 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT--CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence            3457999999999999999999999998  45788887777665554433       111     224677888999988


Q ss_pred             CCCCCCccc---------ee--EEEe-------ccchhhhccccccchhhhcccCCCCCCCHHhhc--cee-eEecCCCC
Q psy14616         91 ATGLGSKVG---------KL--TMKT-------TEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD--RMV-IIPTQPYQ  149 (174)
Q Consensus        91 ~~~~~~~~~---------~~--~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s--R~~-~i~~~~~~  149 (174)
                      ....+...+         ..  .+.+       ..........+..+  |+|+ |.+..+++++++  ||. .+.+  |+
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~v--I~tt-N~~~~ld~al~R~~R~d~~i~~--P~  186 (293)
T 3t15_A          112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI--IVTG-NDFSTLYAPLIRDGRMEKFYWA--PT  186 (293)
T ss_dssp             ------------CHHHHHHHHHHHHHCCC-----------CCCCCCE--EEEC-SSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred             cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEE--EEec-CCcccCCHHHhCCCCCceeEeC--cC
Confidence            543211111         00  0000       00001112334444  6666 899999999994  884 4553  49


Q ss_pred             HHHHHHHHHHHhch
Q psy14616        150 DEEIQAILKIRLVK  163 (174)
Q Consensus       150 ~~e~~~il~~~l~~  163 (174)
                      .++..+|++.++..
T Consensus       187 ~~~r~~Il~~~~~~  200 (293)
T 3t15_A          187 REDRIGVCTGIFRT  200 (293)
T ss_dssp             HHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999987754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.68  E-value=2.5e-16  Score=119.56  Aligned_cols=154  Identities=19%  Similarity=0.267  Sum_probs=94.3

Q ss_pred             CCchHHHHHHHHHHHHHH----------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch-hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMI----------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS-LEMN   69 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~----------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~   69 (174)
                      |+||+.+++.+.......          ..+. .+++++|+||||||||++|+++|+.++.  +++.+++..+.. .+.+
T Consensus        17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKT~la~~la~~l~~--~~~~i~~~~~~~~~~~~   93 (310)
T 1ofh_A           17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVG   93 (310)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHC-CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGGSSCCSGG
T ss_pred             cCChHHHHHHHHHHHHHHHhhhhhcccccccC-CCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEEcchhcccCCccC
Confidence            689999998777555331          1122 3579999999999999999999999974  467777665543 1111


Q ss_pred             h-----hhhhhh---------hccCcEEEEEEeccCCCCCCcc--------ceeEEE--ec----cchhhhccccccchh
Q psy14616         70 K-----TEEETE---------MIEGEVVEIQIERPATGLGSKV--------GKLTMK--TT----EMETSYDLGAKMIEA  121 (174)
Q Consensus        70 ~-----~~~~~~---------~~~~~i~~~~id~~~~~~~~~~--------~~~~~~--~~----~~~~~~~~~~~~~~~  121 (174)
                      .     ..+...         ..++.++++|+|++........        ++..+.  +.    .........+..+  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~--  171 (310)
T 1ofh_A           94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF--  171 (310)
T ss_dssp             GSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE--
T ss_pred             ccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE--
Confidence            1     011000         1246778889988843321000        110000  00    0000111223344  


Q ss_pred             hhcc---cCCCCCCCHHhhcce-eeEecCCCCHHHHHHHHHH
Q psy14616        122 IGTA---YSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKI  159 (174)
Q Consensus       122 i~~~---~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~  159 (174)
                      ++++   .+.+..+++++++|| ..+.|++|+.+++.++++.
T Consensus       172 i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~  213 (310)
T 1ofh_A          172 IASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE  213 (310)
T ss_dssp             EEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred             EEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence            5554   356677999999999 6799999999999999984

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.68  E-value=7.7e-17  Score=123.65  Aligned_cols=142  Identities=20%  Similarity=0.198  Sum_probs=89.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-hhhhh--
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-EETEM--   77 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   77 (174)
                      ++|+++++   ..+..+++.+..+ +.+|++||||||||++|+++|+.++.  .+..++++......+.... +.+..  
T Consensus        28 ivg~~~~~---~~l~~~l~~~~~~-~~~L~~G~~G~GKT~la~~la~~l~~--~~~~i~~~~~~~~~i~~~~~~~~~~~~  101 (324)
T 3u61_B           28 CILPAFDK---ETFKSITSKGKIP-HIILHSPSPGTGKTTVAKALCHDVNA--DMMFVNGSDCKIDFVRGPLTNFASAAS  101 (324)
T ss_dssp             SCCCHHHH---HHHHHHHHTTCCC-SEEEECSSTTSSHHHHHHHHHHHTTE--EEEEEETTTCCHHHHHTHHHHHHHBCC
T ss_pred             HhCcHHHH---HHHHHHHHcCCCC-eEEEeeCcCCCCHHHHHHHHHHHhCC--CEEEEcccccCHHHHHHHHHHHHhhcc
Confidence            68999998   4555556677655 67888999999999999999999974  4677776553322222211 11111  


Q ss_pred             ---ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCCCCHHH
Q psy14616         78 ---IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQDEE  152 (174)
Q Consensus        78 ---~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e  152 (174)
                         ..+.++++|+|.+...   +.++..      ....+.  .+..+  ++++ |.+..+++++++||.+++|++|+.++
T Consensus       102 ~~~~~~vliiDEi~~l~~~---~~~~~L------~~~le~~~~~~~i--I~~~-n~~~~l~~~l~sR~~~i~~~~~~~~e  169 (324)
T 3u61_B          102 FDGRQKVIVIDEFDRSGLA---ESQRHL------RSFMEAYSSNCSI--IITA-NNIDGIIKPLQSRCRVITFGQPTDED  169 (324)
T ss_dssp             CSSCEEEEEEESCCCGGGH---HHHHHH------HHHHHHHGGGCEE--EEEE-SSGGGSCTTHHHHSEEEECCCCCHHH
T ss_pred             cCCCCeEEEEECCcccCcH---HHHHHH------HHHHHhCCCCcEE--EEEe-CCccccCHHHHhhCcEEEeCCCCHHH
Confidence               1234555677666202   122211      111111  22333  4555 77888999999999999999999998


Q ss_pred             HHHHHHHH
Q psy14616        153 IQAILKIR  160 (174)
Q Consensus       153 ~~~il~~~  160 (174)
                      +.++++..
T Consensus       170 ~~~il~~~  177 (324)
T 3u61_B          170 KIEMMKQM  177 (324)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665553

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.65  E-value=6.7e-16  Score=116.13  Aligned_cols=158  Identities=18%  Similarity=0.227  Sum_probs=97.3

Q ss_pred             CCchHHHHHHHHHHHH-HH------H-hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLG-MI------K-EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~-~~------~-~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |.|.+++++.+..... -.      + -+...+++++|+||||||||++++++|..++.  .++.+++..+.+.+.+...
T Consensus        12 i~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~   89 (274)
T 2x8a_A           12 IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESE   89 (274)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHH
Confidence            5688999987765321 11      1 13344578999999999999999999999875  4677777666554443322


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCCCcccee--EEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhc--
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLGSKVGKL--TMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLD--  138 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~s--  138 (174)
                             +.+ ...+..++++++|.+....+......  .............  ...++ .++++ |++..+++++++  
T Consensus        90 ~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i-~ia~t-n~p~~LD~al~r~g  167 (274)
T 2x8a_A           90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF-IMAAT-NRPDIIDPAILRPG  167 (274)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE-EEEEE-SCGGGSCHHHHSTT
T ss_pred             HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE-EEeec-CChhhCCHhhcCcc
Confidence                   222 33455677788877633221110000  0000000111100  11222 14444 899999999997  


Q ss_pred             ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 RM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 R~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      || ..|+++.|+.++..+|++.++.
T Consensus       168 Rfd~~i~~~~P~~~~r~~il~~~~~  192 (274)
T 2x8a_A          168 RLDKTLFVGLPPPADRLAILKTITK  192 (274)
T ss_dssp             SSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred             cCCeEEEeCCcCHHHHHHHHHHHHh
Confidence            99 8899999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.64  E-value=7.2e-16  Score=124.43  Aligned_cols=158  Identities=20%  Similarity=0.257  Sum_probs=102.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhc-------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEG-------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g-------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|+++++..+..+...+...       ...+++++|+||||||||++|+++|..++  .+++.+++..+.....+... 
T Consensus        33 v~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~  110 (499)
T 2dhr_A           33 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA  110 (499)
T ss_dssp             SCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHH
T ss_pred             cCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHH
Confidence            689999999998888776542       22357899999999999999999999987  56888887776554433322 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCCc--ccee---EEEeccchhhhc--cccccchhhhcccCCCCCCCHHhhc
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGSK--VGKL---TMKTTEMETSYD--LGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~~--~~~~---~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                            +.+ ...++.++++++|.+....+..  ...-   ......+.....  ....++ .++++ |++..+++++++
T Consensus       111 ~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vi-viAat-n~p~~LD~aLlr  188 (499)
T 2dhr_A          111 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV-VMAAT-NRPDILDPALLR  188 (499)
T ss_dssp             HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCE-EEECC-SCGGGSCTTTSS
T ss_pred             HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEE-EEEec-CChhhcCccccc
Confidence                  122 1235667788888773322110  0000   000000011111  111222 14454 788889999998


Q ss_pred             --ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 --RM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 --R~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                        || ..+.++.|+.++..+|++.++.
T Consensus       189 ~gRfdr~i~i~~Pd~~~R~~IL~~~~~  215 (499)
T 2dhr_A          189 PGRFDRQIAIDAPDVKGREQILRIHAR  215 (499)
T ss_dssp             TTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred             ccccceEEecCCCCHHHHHHHHHHHHh
Confidence              67 7899999999999999987764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.64  E-value=8.5e-16  Score=130.03  Aligned_cols=157  Identities=18%  Similarity=0.258  Sum_probs=100.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCC----ceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhhhh---hhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAG----RAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLEMN---KTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~----~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~---~~~   72 (174)
                      ++||+.+++.+.......+.+...+    .++||+||||||||++|+++|+.+ +...+++.++++.+......   ...
T Consensus       493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~  572 (758)
T 3pxi_A          493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT  572 (758)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CH
T ss_pred             CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhh
Confidence            6899999988777776666554321    279999999999999999999998 44567888888776653322   111


Q ss_pred             hhhhhcc-CcEEEEEEeccCCCCCCccceeEEE--ec-c----chhhhccccccchhhhcccCCCCC-----------CC
Q psy14616         73 EETEMIE-GEVVEIQIERPATGLGSKVGKLTMK--TT-E----METSYDLGAKMIEAIGTAYSSPHG-----------IP  133 (174)
Q Consensus        73 ~~~~~~~-~~i~~~~id~~~~~~~~~~~~~~~~--~~-~----~~~~~~~~~~~~~~i~~~~~~~~~-----------l~  133 (174)
                      ......+ +.++++|+|++ +.   ..++..+.  +. .    .....+..+..+  |+|++.....           +.
T Consensus       573 ~~~~~~~~~vl~lDEi~~~-~~---~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i--I~ttn~~~~~~~~~~~~~~~~f~  646 (758)
T 3pxi_A          573 EKVRRKPYSVVLLDAIEKA-HP---DVFNILLQVLEDGRLTDSKGRTVDFRNTIL--IMTSNVGASEKDKVMGELKRAFR  646 (758)
T ss_dssp             HHHHHCSSSEEEEECGGGS-CH---HHHHHHHHHHHHSBCC-----CCBCTTCEE--EEEESSSTTCCHHHHHHHHHHSC
T ss_pred             HHHHhCCCeEEEEeCcccc-CH---HHHHHHHHHhccCeEEcCCCCEeccCCeEE--EEeCCCChhhHHHHHHHHHhhCC
Confidence            2222233 45677788877 22   12221111  00 0    011223344555  6677322222           88


Q ss_pred             HHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        134 IDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       134 ~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      |++++|| .++.|++|+.+++.+|++..+..
T Consensus       647 p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~  677 (758)
T 3pxi_A          647 PEFINRIDEIIVFHSLEKKHLTEIVSLMSDQ  677 (758)
T ss_dssp             HHHHTTSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCeEEecCCCCHHHHHHHHHHHHHH
Confidence            9999999 99999999999999999987744

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.63  E-value=2.5e-15  Score=119.37  Aligned_cols=61  Identities=31%  Similarity=0.548  Sum_probs=45.3

Q ss_pred             CCchHHHHHHHHHHHHH-HHhc--------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616          1 MVGQLQARRAAGVVLGM-IKEG--------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI   63 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~~~g--------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~   63 (174)
                      |+||+++++++...... ++..        ..+++++||+||||||||++|+++|+.++.  ++..++++.+
T Consensus        17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~--~~~~v~~~~~   86 (444)
T 1g41_A           17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF   86 (444)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGG
T ss_pred             hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC--Cceeecchhh
Confidence            69999999888765532 1111        124579999999999999999999999984  4666655443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.62  E-value=9.5e-16  Score=119.48  Aligned_cols=90  Identities=28%  Similarity=0.397  Sum_probs=60.5

Q ss_pred             CCchHHHHHHHHHHHHHH----HhcC------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hhh
Q psy14616          1 MVGQLQARRAAGVVLGMI----KEGK------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EMN   69 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~----~~g~------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~   69 (174)
                      |+||+.+++.+.......    +.+.      .++.++||+||||||||++|+++|+.++  .+++.++++.+... +.+
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~--~~~~~~~~~~l~~~~~~g   94 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD--VPFTMADATTLTEAGYVG   94 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHTTCHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEechHHhccccccc
Confidence            689999998776655211    1111      1457999999999999999999999997  55888887665533 222


Q ss_pred             hhh-----h---h-----hhhccCcEEEEEEeccCC
Q psy14616         70 KTE-----E---E-----TEMIEGEVVEIQIERPAT   92 (174)
Q Consensus        70 ~~~-----~---~-----~~~~~~~i~~~~id~~~~   92 (174)
                      ...     .   .     ....++.++++|+|++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~  130 (363)
T 3hws_A           95 EDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR  130 (363)
T ss_dssp             HHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC
T ss_pred             ccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc
Confidence            211     0   1     112356788889998743

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.62  E-value=1.8e-15  Score=115.13  Aligned_cols=155  Identities=22%  Similarity=0.289  Sum_probs=96.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC----cCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhh-----hh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK----IAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLE-----MN-   69 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~----~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~-----~~-   69 (174)
                      ++||+.+++.+.........+.    .+..+++|+||||||||++|+++|+.+.+ ..+++.++++.+....     ++ 
T Consensus        19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   98 (311)
T 4fcw_A           19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA   98 (311)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCC
Confidence            5899999977776665554432    12358999999999999999999999843 2456666665443211     00 


Q ss_pred             -----------hhhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCC-
Q psy14616         70 -----------KTEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSS-  128 (174)
Q Consensus        70 -----------~~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~-  128 (174)
                                 .........+ +.++++|+|++ +.   ..++.        .+.. ......+..+.++  |+++ |. 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-~~---~~~~~Ll~~le~~~~~~-~~~~~~~~~~~ii--I~tt-n~~  170 (311)
T 4fcw_A           99 PPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-HP---DVFNILLQMLDDGRLTD-SHGRTVDFRNTVI--IMTS-NLG  170 (311)
T ss_dssp             CTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-CH---HHHHHHHHHHHHSEEEC-TTSCEEECTTEEE--EEEE-STT
T ss_pred             CCccccccccchHHHHHHhCCCeEEEEeChhhc-CH---HHHHHHHHHHhcCEEEc-CCCCEEECCCcEE--EEec-ccC
Confidence                       0001111123 45666777776 22   11111        1110 0111223344444  6666 44 


Q ss_pred             -------------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 -------------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 -------------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                               ...++++|++|| .++.+.+|+.+++.++++..+.+
T Consensus       171 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~  231 (311)
T 4fcw_A          171 SPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSY  231 (311)
T ss_dssp             HHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred             HHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence                                     335889999999 89999999999999999987754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.61  E-value=3.8e-15  Score=126.00  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=99.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh----------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL----------   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----------   66 (174)
                      |+||+++++.+.......+.|..    |..++||+||||||||++|+++|+.++  .+++.++++.+...          
T Consensus       460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~--~~~~~i~~s~~~~~~~~~~l~g~~  537 (758)
T 1r6b_X          460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAP  537 (758)
T ss_dssp             SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred             ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCEEEEechhhcchhhHhhhcCCC
Confidence            68999999888777766665543    334899999999999999999999997  45777776655331          


Q ss_pred             --hhhh-----hhhhhhhcc-CcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCCC
Q psy14616         67 --EMNK-----TEEETEMIE-GEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 --~~~~-----~~~~~~~~~-~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  130 (174)
                        +++.     ........+ +.++++|+|++ +.   +.++.        .+.+. .....++.+.++  |+|+ |...
T Consensus       538 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-~~---~~~~~Ll~~le~~~~~~~-~g~~~~~~~~~i--I~ts-N~~~  609 (758)
T 1r6b_X          538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-HP---DVFNILLQVMDNGTLTDN-NGRKADFRNVVL--VMTT-NAGV  609 (758)
T ss_dssp             SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-CH---HHHHHHHHHHHHSEEEET-TTEEEECTTEEE--EEEE-CSSC
T ss_pred             CCCcCccccchHHHHHHhCCCcEEEEeCcccc-CH---HHHHHHHHHhcCcEEEcC-CCCEEecCCeEE--EEec-Ccch
Confidence              1111     011112233 45677788876 22   11111        11111 122233444555  6666 4432


Q ss_pred             -------------------------CCCHHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        131 -------------------------GIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       131 -------------------------~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                                               .+.|+|++|| .++.|++++.+++.+|++..+.
T Consensus       610 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~  667 (758)
T 1r6b_X          610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_dssp             C-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             hhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHH
Confidence                                     5789999999 8899999999999999999775

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.61  E-value=2.7e-15  Score=115.77  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeeeccc---ccch
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSMAGS---EIYS   65 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~~~~---~~~~   65 (174)
                      ...+...+++|+.+ +.+||+||||+|||++|+++|+.+.+...                      +..+...   ...+
T Consensus        11 ~~~l~~~i~~~~~~-~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~   89 (334)
T 1a5t_A           11 FEKLVASYQAGRGH-HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLG   89 (334)
T ss_dssp             HHHHHHHHHTTCCC-SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBC
T ss_pred             HHHHHHHHHcCCcc-eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCC
Confidence            36677778888876 78999999999999999999999976532                      1112111   0010


Q ss_pred             -hhhhhhhhhhhhcc--C---cEEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhh
Q psy14616         66 -LEMNKTEEETEMIE--G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        66 -~~~~~~~~~~~~~~--~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                       ..+....+.....+  +   .++++++|.+ +.   +.++..      ....+.+  +..+  |.++ +.+..++++++
T Consensus        90 i~~ir~l~~~~~~~~~~~~~kvviIdead~l-~~---~a~naL------Lk~lEep~~~~~~--Il~t-~~~~~l~~ti~  156 (334)
T 1a5t_A           90 VDAVREVTEKLNEHARLGGAKVVWVTDAALL-TD---AAANAL------LKTLEEPPAETWF--FLAT-REPERLLATLR  156 (334)
T ss_dssp             HHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-CH---HHHHHH------HHHHTSCCTTEEE--EEEE-SCGGGSCHHHH
T ss_pred             HHHHHHHHHHHhhccccCCcEEEEECchhhc-CH---HHHHHH------HHHhcCCCCCeEE--EEEe-CChHhCcHHHh
Confidence             01111111111111  1   2344455555 22   112211      1112222  2344  4444 56788999999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      |||+++.|.+++.+++.++++...
T Consensus       157 SRc~~~~~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          157 SRCRLHYLAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             TTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             hcceeeeCCCCCHHHHHHHHHHhc
Confidence            999999999999999999998864

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.60  E-value=1.6e-15  Score=116.02  Aligned_cols=151  Identities=22%  Similarity=0.259  Sum_probs=93.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhh-hh-hc
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEE-TE-MI   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~   78 (174)
                      +||++.+++.+..+.........++.+++|+||||||||++|+++++.++.  ++..+++.....  .+..... .. ..
T Consensus        14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~~--~~~l~~~l~~~~~   89 (324)
T 1hqc_A           14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV--NLRVTSGPAIEK--PGDLAAILANSLE   89 (324)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC--CEEEECTTTCCS--HHHHHHHHTTTCC
T ss_pred             hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC--CEEEEeccccCC--hHHHHHHHHHhcc
Confidence            689999998887777665543334579999999999999999999999984  455555544321  0111110 11 12


Q ss_pred             -cCcEEEEEEeccCCCCCCcccee----------EEEeccc--hhh--hccccccchhhhcccCCCCCCCHHhhcce-ee
Q psy14616         79 -EGEVVEIQIERPATGLGSKVGKL----------TMKTTEM--ETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VI  142 (174)
Q Consensus        79 -~~~i~~~~id~~~~~~~~~~~~~----------~~~~~~~--~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~  142 (174)
                       ++.++++|+|.+ +.   ..+..          .......  ...  ...++..+  ++++ |....+++++.+|| .+
T Consensus        90 ~~~~l~lDEi~~l-~~---~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~--i~~t-~~~~~~~~~l~~R~~~~  162 (324)
T 1hqc_A           90 EGDILFIDEIHRL-SR---QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL--IGAT-TRPGLITAPLLSRFGIV  162 (324)
T ss_dssp             TTCEEEETTTTSC-CH---HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE--EEEE-SCCSSCSCSTTTTCSCE
T ss_pred             CCCEEEEECCccc-cc---chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE--EEeC-CCcccCCHHHHhcccEE
Confidence             334555566665 21   11110          0000000  000  01122233  5555 77788999999999 79


Q ss_pred             EecCCCCHHHHHHHHHHHhc
Q psy14616        143 IPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       143 i~~~~~~~~e~~~il~~~l~  162 (174)
                      +.+++++.+++.++++....
T Consensus       163 i~l~~~~~~e~~~~l~~~~~  182 (324)
T 1hqc_A          163 EHLEYYTPEELAQGVMRDAR  182 (324)
T ss_dssp             EECCCCCHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHHHH
Confidence            99999999999999988764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.59  E-value=9.5e-15  Score=114.28  Aligned_cols=61  Identities=30%  Similarity=0.454  Sum_probs=45.7

Q ss_pred             CCchHHHHHHHHHHH----HHHHhc---------------------CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe
Q psy14616          1 MVGQLQARRAAGVVL----GMIKEG---------------------KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF   55 (174)
Q Consensus         1 iiG~~~~~~~l~~~~----~~~~~g---------------------~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~   55 (174)
                      |+||+++++.+....    ...+.|                     ..+..+++|+||||||||++|+++|+.++.  ++
T Consensus        23 viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--~~  100 (376)
T 1um8_A           23 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI--PI  100 (376)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC--CE
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC--CE
Confidence            689999998887655    222211                     123578999999999999999999999974  56


Q ss_pred             eeeccccc
Q psy14616         56 TSMAGSEI   63 (174)
Q Consensus        56 ~~~~~~~~   63 (174)
                      +.+++..+
T Consensus       101 ~~~~~~~~  108 (376)
T 1um8_A          101 AISDATSL  108 (376)
T ss_dssp             EEEEGGGC
T ss_pred             EEecchhh
Confidence            77666554

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.59  E-value=2.1e-15  Score=115.26  Aligned_cols=145  Identities=21%  Similarity=0.275  Sum_probs=88.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh-hh-hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM-NK-TEEET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~-~~-~~~~~   75 (174)
                      ++||+++++.+   ..+++.+..+  +++|+||||||||++|+++++.+++.   ..+..+++++..+.+. .. ..+..
T Consensus        27 ~~g~~~~~~~l---~~~l~~~~~~--~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (327)
T 1iqp_A           27 IVGQEHIVKRL---KHYVKTGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA  101 (327)
T ss_dssp             CCSCHHHHHHH---HHHHHHTCCC--EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred             hhCCHHHHHHH---HHHHHcCCCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHH
Confidence            68999998554   4556777654  69999999999999999999987432   2244555443322111 00 01111


Q ss_pred             h---hc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         76 E---MI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        76 ~---~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                      .   ..   ...++++++|.+ +.   ..++..      ....+.  .+..+  +.++ +.+..+.+++.+||..+.|++
T Consensus       102 ~~~~~~~~~~~vliiDe~~~l-~~---~~~~~L------~~~le~~~~~~~~--i~~~-~~~~~l~~~l~sr~~~~~~~~  168 (327)
T 1iqp_A          102 RTKPIGGASFKIIFLDEADAL-TQ---DAQQAL------RRTMEMFSSNVRF--ILSC-NYSSKIIEPIQSRCAIFRFRP  168 (327)
T ss_dssp             HSCCGGGCSCEEEEEETGGGS-CH---HHHHHH------HHHHHHTTTTEEE--EEEE-SCGGGSCHHHHHTEEEEECCC
T ss_pred             hhCCcCCCCCeEEEEeCCCcC-CH---HHHHHH------HHHHHhcCCCCeE--EEEe-CCccccCHHHHhhCcEEEecC
Confidence            1   11   223455566655 22   111111      111111  22233  4444 667789999999999999999


Q ss_pred             CCHHHHHHHHHHHhch
Q psy14616        148 YQDEEIQAILKIRLVK  163 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~  163 (174)
                      ++.+++.++++..+..
T Consensus       169 l~~~~~~~~l~~~~~~  184 (327)
T 1iqp_A          169 LRDEDIAKRLRYIAEN  184 (327)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999886543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.59  E-value=6.6e-16  Score=108.95  Aligned_cols=147  Identities=17%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      ++|+++..+.+   .+.+..+.  +.+++|+||||||||++++++++.+.+        ...+..++......  ...+.
T Consensus        24 ~~g~~~~~~~l---~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1jbk_A           24 VIGRDEEIRRT---IQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE   98 (195)
T ss_dssp             CCSCHHHHHHH---HHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHH
T ss_pred             cccchHHHHHH---HHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcccc
Confidence            57888777444   44444432  468999999999999999999998732        23344444433321  11111


Q ss_pred             hh----hh---h-hhccC-cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC-----CCCHHh
Q psy14616         71 TE----EE---T-EMIEG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH-----GIPIDL  136 (174)
Q Consensus        71 ~~----~~---~-~~~~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~l  136 (174)
                      ..    ..   . ....+ .++++++|.+....... ....+ ...+....+..+..+  ++++ +.+.     .+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~-~~~~~-~~~l~~~~~~~~~~~--i~~~-~~~~~~~~~~~~~~l  173 (195)
T 1jbk_A           99 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDA-GNMLKPALARGELHC--VGAT-TLDEYRQYIEKDAAL  173 (195)
T ss_dssp             HHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCC-HHHHHHHHHTTSCCE--EEEE-CHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc-chHHH-HHHHHHhhccCCeEE--EEeC-CHHHHHHHHhcCHHH
Confidence            11    00   0 11112 46667777763221000 00000 011112222233334  5555 3332     689999


Q ss_pred             hcceeeEecCCCCHHHHHHHH
Q psy14616        137 LDRMVIIPTQPYQDEEIQAIL  157 (174)
Q Consensus       137 ~sR~~~i~~~~~~~~e~~~il  157 (174)
                      ++||..+.+++|+.++..+++
T Consensus       174 ~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          174 ERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHhceeecCCCCHHHHHHHh
Confidence            999988999999999988765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.58  E-value=8.5e-15  Score=113.87  Aligned_cols=146  Identities=18%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch--------------h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------------L   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~--------------~   66 (174)
                      ++|++++++   .+...++.++.+ +.++|+||||||||++|+++|+.+++........++.+..              .
T Consensus        18 ~vg~~~~~~---~L~~~l~~~~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (373)
T 1jr3_A           18 VVGQEHVLT---ALANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI   93 (373)
T ss_dssp             SCSCHHHHH---HHHHHHHHTCCC-SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred             ccCcHHHHH---HHHHHHHhCCCC-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence            689999985   444555667654 6789999999999999999999997653221111111100              0


Q ss_pred             ---------hhhhhhhhhhhc-----cCcEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCCCC
Q psy14616         67 ---------EMNKTEEETEMI-----EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ---------~~~~~~~~~~~~-----~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~  130 (174)
                               .+....+.....     +..++++++|.+ +.   ...+.      +....+ . .+..+  +.++ +...
T Consensus        94 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-~~---~~~~~------Ll~~le~~~~~~~~--Il~~-~~~~  160 (373)
T 1jr3_A           94 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNA------LLKTLEEPPEHVKF--LLAT-TDPQ  160 (373)
T ss_dssp             ETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-CH---HHHHH------HHHHHHSCCSSEEE--EEEE-SCGG
T ss_pred             cccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-cH---HHHHH------HHHHHhcCCCceEE--EEEe-CChH
Confidence                     000111111111     113444455544 21   11111      111111 1 22333  4444 4667


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .+.+++.+||..+.+.+++.+++.++++..+.+
T Consensus       161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~  193 (373)
T 1jr3_A          161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE  193 (373)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999999999999987644

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.58  E-value=3.2e-15  Score=110.97  Aligned_cols=158  Identities=20%  Similarity=0.260  Sum_probs=94.8

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh--
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT--   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--   71 (174)
                      ++|+++++..+..+......       +...+++++|+||||||||++++++|..++  ..++.+++..+.....+..  
T Consensus        18 i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~   95 (254)
T 1ixz_A           18 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA   95 (254)
T ss_dssp             CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHH
Confidence            57999999888877765542       122346799999999999999999999987  4466666554433222221  


Q ss_pred             -----hhhhh-hccCcEEEEEEeccCCCCCCc----cce-eEEEeccchhhhc--cccccchhhhcccCCCCCCCHHhhc
Q psy14616         72 -----EEETE-MIEGEVVEIQIERPATGLGSK----VGK-LTMKTTEMETSYD--LGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        72 -----~~~~~-~~~~~i~~~~id~~~~~~~~~----~~~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                           .+.+. ..+..++++++|.+.......    ... .......+.....  ....++ .++++ |++..+++++++
T Consensus        96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i-~~a~t-~~p~~ld~~l~r  173 (254)
T 1ixz_A           96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV-VMAAT-NRPDILDPALLR  173 (254)
T ss_dssp             HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEE-EEEEE-SCGGGSCGGGGS
T ss_pred             HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEE-EEEcc-CCchhCCHHHcC
Confidence                 12221 234556667777652221000    000 0000000011110  111222 14444 788889999998


Q ss_pred             --ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 --RM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 --R~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                        || ..++++.|+.++..+|++.+..
T Consensus       174 ~~rf~~~i~i~~p~~~~r~~il~~~~~  200 (254)
T 1ixz_A          174 PGRFDRQIAIDAPDVKGREQILRIHAR  200 (254)
T ss_dssp             TTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred             CCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence              77 7899999999999999987653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.58  E-value=1.4e-14  Score=116.54  Aligned_cols=140  Identities=21%  Similarity=0.198  Sum_probs=79.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |||++..++.+.   ..+...  ...++||+||||||||++|+++|+.+.+        ...++.++++   ..+.+..+
T Consensus       182 iiGr~~~i~~l~---~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e  253 (468)
T 3pxg_A          182 VIGRSKEIQRVI---EVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFE  253 (468)
T ss_dssp             CCCCHHHHHHHH---HHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------C
T ss_pred             ccCcHHHHHHHH---HHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHH
Confidence            689998885544   444443  3469999999999999999999999732        2334555544   11222211


Q ss_pred             -------hhhhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhccee
Q psy14616         73 -------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLDRMV  141 (174)
Q Consensus        73 -------~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~sR~~  141 (174)
                             +......+.+++  +| . ..   +.++....      ....+...+  |++++...    ..+++++++||+
T Consensus       254 ~~~~~~~~~~~~~~~~iLf--iD-~-~~---~a~~~L~~------~L~~g~v~v--I~at~~~e~~~~~~~~~al~~Rf~  318 (468)
T 3pxg_A          254 DRLKKVMDEIRQAGNIILF--ID-A-AI---DASNILKP------SLARGELQC--IGATTLDEYRKYIEKDAALERRFQ  318 (468)
T ss_dssp             TTHHHHHHHHHTCCCCEEE--EC-C------------CC------CTTSSSCEE--EEECCTTTTHHHHTTCSHHHHSEE
T ss_pred             HHHHHHHHHHHhcCCeEEE--Ee-C-ch---hHHHHHHH------hhcCCCEEE--EecCCHHHHHHHhhcCHHHHHhCc
Confidence                   111112233333  44 1 11   11121111      111222333  66663333    268999999999


Q ss_pred             eEecCCCCHHHHHHHHHHHhch
Q psy14616        142 IIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       142 ~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++.+++|+.++..+|++..+.+
T Consensus       319 ~i~v~~p~~e~~~~iL~~~~~~  340 (468)
T 3pxg_A          319 PIQVDQPSVDESIQILQGLRDR  340 (468)
T ss_dssp             EEECCCCCHHHHHHHHHHTTTT
T ss_pred             cceeCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999986544

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.58  E-value=1e-14  Score=118.54  Aligned_cols=152  Identities=16%  Similarity=0.084  Sum_probs=90.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC------------cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK------------IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM   68 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~------------~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~   68 (174)
                      ++|++.+++.+..+........            .+.+++||+||||||||++|+++|+.++  ..++.++++.....+.
T Consensus        41 liG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~~i~in~s~~~~~~~  118 (516)
T 1sxj_A           41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YDILEQNASDVRSKTL  118 (516)
T ss_dssp             CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CEEEEECTTSCCCHHH
T ss_pred             hcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CCEEEEeCCCcchHHH
Confidence            6899999977776665433211            1347999999999999999999999997  4577777766544322


Q ss_pred             hhhh-h-------hhh------------hccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCC
Q psy14616         69 NKTE-E-------ETE------------MIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSS  128 (174)
Q Consensus        69 ~~~~-~-------~~~------------~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  128 (174)
                      .... .       ...            ..+..++++|+|.+....   .+.+    ..+.......+..+  ++++++.
T Consensus       119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~---~~~l----~~L~~~l~~~~~~i--Ili~~~~  189 (516)
T 1sxj_A          119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD---RGGV----GQLAQFCRKTSTPL--ILICNER  189 (516)
T ss_dssp             HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS---TTHH----HHHHHHHHHCSSCE--EEEESCT
T ss_pred             HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh---HHHH----HHHHHHHHhcCCCE--EEEEcCC
Confidence            1110 0       001            112234556776663321   1100    01111112222223  2233222


Q ss_pred             CCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 PHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .....+++.+||..+.|++++.+++.++++....+
T Consensus       190 ~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~  224 (516)
T 1sxj_A          190 NLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR  224 (516)
T ss_dssp             TSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             CCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            22344678999999999999999999999886543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.58  E-value=3.7e-15  Score=114.61  Aligned_cols=148  Identities=19%  Similarity=0.261  Sum_probs=84.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc-cchhh-hhhhh-----h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE-IYSLE-MNKTE-----E   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~-~~~~~-~~~~~-----~   73 (174)
                      ++||+++++.+....   ..    +.+++|+||||||||++|+++|+.++..  +..+++.. ....+ .+...     .
T Consensus        29 i~g~~~~~~~l~~~l---~~----~~~vll~G~pGtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~l~g~~~~~~~~~   99 (331)
T 2r44_A           29 VVGQKYMINRLLIGI---CT----GGHILLEGVPGLAKTLSVNTLAKTMDLD--FHRIQFTPDLLPSDLIGTMIYNQHKG   99 (331)
T ss_dssp             CCSCHHHHHHHHHHH---HH----TCCEEEESCCCHHHHHHHHHHHHHTTCC--EEEEECCTTCCHHHHHEEEEEETTTT
T ss_pred             eeCcHHHHHHHHHHH---Hc----CCeEEEECCCCCcHHHHHHHHHHHhCCC--eEEEecCCCCChhhcCCceeecCCCC
Confidence            689999986655433   33    3599999999999999999999999854  44444321 10000 00000     0


Q ss_pred             h-----hhhccCcEEEEEEeccCCCCCC------ccceeEEEeccchhhhccccccchhhhcccCCCC-----CCCHHhh
Q psy14616         74 E-----TEMIEGEVVEIQIERPATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH-----GIPIDLL  137 (174)
Q Consensus        74 ~-----~~~~~~~i~~~~id~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~l~  137 (174)
                      .     ..+..+.++++|+|++......      +.+....    .......+...+ .++|+ |+..     .++++++
T Consensus       100 ~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~----~g~~~~~~~~~~-viat~-np~~~~~~~~l~~~l~  173 (331)
T 2r44_A          100 NFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI----GDTTYPLDNPFL-VLATQ-NPVEQEGTYPLPEAQV  173 (331)
T ss_dssp             EEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE----TTEEEECCSSCE-EEEEE-CTTCCSCCCCCCHHHH
T ss_pred             ceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceee----CCEEEECCCCEE-EEEec-CCCcccCcccCCHHHH
Confidence            0     0111245666677765211100      0011111    011112222222 24444 5432     3899999


Q ss_pred             ccee-eEecCCCCHHHHHHHHHHHhch
Q psy14616        138 DRMV-IIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       138 sR~~-~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +||. .+.+++|+.++..+|++.....
T Consensus       174 ~Rf~~~i~i~~p~~~~~~~il~~~~~~  200 (331)
T 2r44_A          174 DRFMMKIHLTYLDKESELEVMRRVSNM  200 (331)
T ss_dssp             TTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred             hheeEEEEcCCCCHHHHHHHHHhcccc
Confidence            9995 6999999999999999987654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.57  E-value=5.9e-15  Score=106.32  Aligned_cols=144  Identities=19%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---CCCeeeecccccchhhh-hh-hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---DTPFTSMAGSEIYSLEM-NK-TEEET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~-~~-~~~~~   75 (174)
                      ++|++.+++.+   ...++.+..+  +++|+||||||||++++.+++.+..   ...+..+++........ .. .....
T Consensus        19 ~~g~~~~~~~l---~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (226)
T 2chg_A           19 VVGQDEVIQRL---KGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA   93 (226)
T ss_dssp             CCSCHHHHHHH---HHHHHTTCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHH---HHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence            57888888554   4445555433  6999999999999999999998732   23355555443322111 00 00111


Q ss_pred             h------hccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         76 E------MIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        76 ~------~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                      .      ..+..++++++|.+...    ....      +....+.  .+..+  ++++ +.+..+++++.+||..+.+++
T Consensus        94 ~~~~~~~~~~~vliiDe~~~l~~~----~~~~------l~~~l~~~~~~~~~--i~~~-~~~~~~~~~l~~r~~~i~~~~  160 (226)
T 2chg_A           94 RTAPIGGAPFKIIFLDEADALTAD----AQAA------LRRTMEMYSKSCRF--ILSC-NYVSRIIEPIQSRCAVFRFKP  160 (226)
T ss_dssp             TSCCSTTCSCEEEEEETGGGSCHH----HHHH------HHHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECCC
T ss_pred             cccCCCccCceEEEEeChhhcCHH----HHHH------HHHHHHhcCCCCeE--EEEe-CChhhcCHHHHHhCceeecCC
Confidence            1      11223455555554211    1110      1111111  22233  4455 667789999999999999999


Q ss_pred             CCHHHHHHHHHHHhc
Q psy14616        148 YQDEEIQAILKIRLV  162 (174)
Q Consensus       148 ~~~~e~~~il~~~l~  162 (174)
                      ++.+++.++++..+.
T Consensus       161 ~~~~~~~~~l~~~~~  175 (226)
T 2chg_A          161 VPKEAMKKRLLEICE  175 (226)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.57  E-value=3.6e-15  Score=113.53  Aligned_cols=145  Identities=21%  Similarity=0.258  Sum_probs=88.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhh-hhhh-hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLE-MNKT-EEET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~-~~~~-~~~~   75 (174)
                      ++|++++++.   +...++.+..+  +++|+||||||||++|+++++.+.+.   ..+..+++.+..+.+ +... ....
T Consensus        19 ~~g~~~~~~~---l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (319)
T 2chq_A           19 VVGQDEVIQR---LKGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA   93 (319)
T ss_dssp             SCSCHHHHHH---HHTTTTTTCCC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHH
T ss_pred             HhCCHHHHHH---HHHHHhCCCCC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHH
Confidence            5899998854   44455666554  59999999999999999999987332   234555554332211 1110 0111


Q ss_pred             ---hhc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         76 ---EMI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        76 ---~~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                         ...   ...++++++|.+ +.   ..++.      +....+.  .+..+  +.++ |.+..+.+++.+||.++.|.+
T Consensus        94 ~~~~~~~~~~~vliiDe~~~l-~~---~~~~~------L~~~le~~~~~~~~--i~~~-~~~~~l~~~l~sr~~~i~~~~  160 (319)
T 2chq_A           94 RTAPIGGAPFKIIFLDEADAL-TA---DAQAA------LRRTMEMYSKSCRF--ILSC-NYVSRIIEPIQSRCAVFRFKP  160 (319)
T ss_dssp             HSCCSSSCCCEEEEEETGGGS-CH---HHHHT------TGGGTSSSSSSEEE--EEEE-SCGGGSCHHHHTTCEEEECCC
T ss_pred             hcCCCCCCCceEEEEeCCCcC-CH---HHHHH------HHHHHHhcCCCCeE--EEEe-CChhhcchHHHhhCeEEEecC
Confidence               011   123455566655 21   11111      1111111  22333  4454 677789999999999999999


Q ss_pred             CCHHHHHHHHHHHhch
Q psy14616        148 YQDEEIQAILKIRLVK  163 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~  163 (174)
                      ++.+++.++++..+.+
T Consensus       161 ~~~~~~~~~l~~~~~~  176 (319)
T 2chq_A          161 VPKEAMKKRLLEICEK  176 (319)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999987643

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.57  E-value=4.1e-15  Score=113.38  Aligned_cols=144  Identities=17%  Similarity=0.225  Sum_probs=88.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchh-hhhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSL-EMNKTEEETE   76 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~-~~~~~~~~~~   76 (174)
                      ++|++++++   .+...+++++.+  +++|+||||+|||++|+++++.+.+.   ..+..+++.+..+. .+........
T Consensus        23 ~~g~~~~~~---~l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (323)
T 1sxj_B           23 IVGNKETID---RLQQIAKDGNMP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFA   97 (323)
T ss_dssp             CCSCTHHHH---HHHHHHHSCCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred             HHCCHHHHH---HHHHHHHcCCCC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHH
Confidence            589999885   455556777655  49999999999999999999987432   23445554432211 1111111100


Q ss_pred             ----hc-cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecC
Q psy14616         77 ----MI-EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQ  146 (174)
Q Consensus        77 ----~~-~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~  146 (174)
                          .+ .+   .++++++|.+ +.   ..++.      +....+.  .+..+  +.++ +.+..+++++.+||.++.|.
T Consensus        98 ~~~~~~~~~~~~viiiDe~~~l-~~---~~~~~------L~~~le~~~~~~~~--il~~-~~~~~l~~~l~sr~~~i~~~  164 (323)
T 1sxj_B           98 QKKLHLPPGKHKIVILDEADSM-TA---GAQQA------LRRTMELYSNSTRF--AFAC-NQSNKIIEPLQSQCAILRYS  164 (323)
T ss_dssp             HBCCCCCTTCCEEEEEESGGGS-CH---HHHHT------THHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECC
T ss_pred             hccccCCCCCceEEEEECcccC-CH---HHHHH------HHHHHhccCCCceE--EEEe-CChhhchhHHHhhceEEeec
Confidence                11 22   3444565555 21   11111      1111111  22333  4444 66788999999999999999


Q ss_pred             CCCHHHHHHHHHHHhc
Q psy14616        147 PYQDEEIQAILKIRLV  162 (174)
Q Consensus       147 ~~~~~e~~~il~~~l~  162 (174)
                      +++.+++.++++..+.
T Consensus       165 ~~~~~~~~~~l~~~~~  180 (323)
T 1sxj_B          165 KLSDEDVLKRLLQIIK  180 (323)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998664

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.56  E-value=9.1e-15  Score=109.98  Aligned_cols=158  Identities=20%  Similarity=0.260  Sum_probs=95.1

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhh--
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKT--   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--   71 (174)
                      |+|+++++..+..+......       +...+++++|+||||||||+++++++..++  ..++.+++..+.....+..  
T Consensus        42 i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~  119 (278)
T 1iy2_A           42 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA  119 (278)
T ss_dssp             SSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHH
T ss_pred             hCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHH
Confidence            68999999888877765542       122346799999999999999999999987  4466666554433222211  


Q ss_pred             -----hhhhh-hccCcEEEEEEeccCCCCCCc----cce-eEEEeccchhhhc--cccccchhhhcccCCCCCCCHHhhc
Q psy14616         72 -----EEETE-MIEGEVVEIQIERPATGLGSK----VGK-LTMKTTEMETSYD--LGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        72 -----~~~~~-~~~~~i~~~~id~~~~~~~~~----~~~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                           .+.+. ..+..++++++|.+.......    ... .......+.....  ....++ .++++ |++..+++++++
T Consensus       120 ~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i-~~a~t-~~p~~ld~~l~r  197 (278)
T 1iy2_A          120 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV-VMAAT-NRPDILDPALLR  197 (278)
T ss_dssp             HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEE-EEEEE-SCTTSSCHHHHS
T ss_pred             HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEE-EEEec-CCchhCCHhHcC
Confidence                 12222 334556667777652221000    000 0000000001000  011122 14444 788889999997


Q ss_pred             --ce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 --RM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 --R~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                        || ..++++.|+.++..+|++.++.
T Consensus       198 ~~rf~~~i~i~~p~~~~r~~il~~~~~  224 (278)
T 1iy2_A          198 PGRFDRQIAIDAPDVKGREQILRIHAR  224 (278)
T ss_dssp             TTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred             CCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence              77 7899999999999999987664

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.56  E-value=7.6e-15  Score=113.38  Aligned_cols=144  Identities=19%  Similarity=0.257  Sum_probs=86.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---Ceeeecccccchhh-hhhh-hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---PFTSMAGSEIYSLE-MNKT-EEET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~-~~~~-~~~~   75 (174)
                      ++||++++   ..+...++.|+.+  +++|+||||+|||++++++|+.+.+..   .+..++..+..+.+ +... ....
T Consensus        27 ~~g~~~~~---~~L~~~i~~g~~~--~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~  101 (340)
T 1sxj_C           27 VYGQNEVI---TTVRKFVDEGKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA  101 (340)
T ss_dssp             CCSCHHHH---HHHHHHHHTTCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred             hcCcHHHH---HHHHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence            57999888   4555666888766  599999999999999999999985432   23344443321110 0000 0111


Q ss_pred             ---hhccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         76 ---EMIEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        76 ---~~~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                         ..+.+   .++++++|.+ +.   ..++..      ....+.  .+..+  +.++ |.+..+.++++|||+++.|.+
T Consensus       102 ~~~~~~~~~~~viiiDe~~~l-~~---~~~~~L------~~~le~~~~~~~~--il~~-n~~~~i~~~i~sR~~~~~~~~  168 (340)
T 1sxj_C          102 STRQIFSKGFKLIILDEADAM-TN---AAQNAL------RRVIERYTKNTRF--CVLA-NYAHKLTPALLSQCTRFRFQP  168 (340)
T ss_dssp             HBCCSSSCSCEEEEETTGGGS-CH---HHHHHH------HHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECCC
T ss_pred             hhcccCCCCceEEEEeCCCCC-CH---HHHHHH------HHHHhcCCCCeEE--EEEe-cCccccchhHHhhceeEeccC
Confidence               11111   2233345444 22   111111      111111  12223  3344 677889999999999999999


Q ss_pred             CCHHHHHHHHHHHhc
Q psy14616        148 YQDEEIQAILKIRLV  162 (174)
Q Consensus       148 ~~~~e~~~il~~~l~  162 (174)
                      ++.+++.+++...+.
T Consensus       169 l~~~~~~~~l~~~~~  183 (340)
T 1sxj_C          169 LPQEAIERRIANVLV  183 (340)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988663

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.55  E-value=1.9e-15  Score=115.31  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=85.8

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC-C---CCCeeeecccc-cch-hhhhhhhhhhh
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG-P---DTPFTSMAGSE-IYS-LEMNKTEEETE   76 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~-~---~~~~~~~~~~~-~~~-~~~~~~~~~~~   76 (174)
                      ||+++.   ..+...+++++  .+++||+||||+|||++|+++|+..+ +   ...+..++..+ ..+ .++....+.+.
T Consensus         1 g~~~~~---~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~   75 (305)
T 2gno_A            1 GAKDQL---ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN   75 (305)
T ss_dssp             ---CHH---HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT
T ss_pred             ChHHHH---HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh
Confidence            788888   56666778888  36999999999999999999998642 1   12345555432 122 12333333333


Q ss_pred             hcc--C--c-EEEEEEeccCCCCCCccceeEEEeccchhhhccc--cccchhhhcccCCCCCCCHHhhcceeeEecCCCC
Q psy14616         77 MIE--G--E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLG--AKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQ  149 (174)
Q Consensus        77 ~~~--~--~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~  149 (174)
                      ..|  +  + +++++.|.+ +.   ..++..      ....+.+  ++.|  |.++ +.+..+.++++||  +++|.+++
T Consensus        76 ~~p~~~~~kvviIdead~l-t~---~a~naL------Lk~LEep~~~t~f--Il~t-~~~~kl~~tI~SR--~~~f~~l~  140 (305)
T 2gno_A           76 YSPELYTRKYVIVHDCERM-TQ---QAANAF------LKALEEPPEYAVI--VLNT-RRWHYLLPTIKSR--VFRVVVNV  140 (305)
T ss_dssp             SCCSSSSSEEEEETTGGGB-CH---HHHHHT------HHHHHSCCTTEEE--EEEE-SCGGGSCHHHHTT--SEEEECCC
T ss_pred             hccccCCceEEEeccHHHh-CH---HHHHHH------HHHHhCCCCCeEE--EEEE-CChHhChHHHHce--eEeCCCCC
Confidence            332  2  3 344466665 32   222221      1222222  3344  3344 4667899999999  99999999


Q ss_pred             HHHHHHHHHHHh
Q psy14616        150 DEEIQAILKIRL  161 (174)
Q Consensus       150 ~~e~~~il~~~l  161 (174)
                      ++++.++++...
T Consensus       141 ~~~i~~~L~~~~  152 (305)
T 2gno_A          141 PKEFRDLVKEKI  152 (305)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.8e-15  Score=114.63  Aligned_cols=152  Identities=11%  Similarity=0.053  Sum_probs=83.9

Q ss_pred             chHHHHHHHH-HHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchhh------
Q psy14616          3 GQLQARRAAG-VVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSLE------   67 (174)
Q Consensus         3 G~~~~~~~l~-~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~------   67 (174)
                      |.|+-...+. .+...+..+.  +.+++++||||||||++++.+++.+..        .+.++.+++..+.+..      
T Consensus        24 ~Re~E~~~i~~~L~~~i~~~~--~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I  101 (318)
T 3te6_A           24 SQVEDFTRIFLPIYDSLMSSQ--NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI  101 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence            3344444444 4444555554  369999999999999999999999832        2345667764432210      


Q ss_pred             ---h-h------h----hh---hh---hhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccC
Q psy14616         68 ---M-N------K----TE---EE---TEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYS  127 (174)
Q Consensus        68 ---~-~------~----~~---~~---~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  127 (174)
                         + +      .    +.   +.   ....+..++++|+|.+. .     +.+.+... .......++..+.+++.+.+
T Consensus       102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----q~~L~~l~-~~~~~~~s~~~vI~i~n~~d  174 (318)
T 3te6_A          102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----EKILQYFE-KWISSKNSKLSIICVGGHNV  174 (318)
T ss_dssp             HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----THHHHHHH-HHHHCSSCCEEEEEECCSSC
T ss_pred             HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----chHHHHHH-hcccccCCcEEEEEEecCcc
Confidence               0 0      0    00   00   00112245556777663 1     11111000 00111223444422233322


Q ss_pred             CCC-CCCHHhhcce--eeEecCCCCHHHHHHHHHHHhch
Q psy14616        128 SPH-GIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       128 ~~~-~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .+. .+++.++|||  .+|.|++|+.+|+.+|+++++..
T Consensus       175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~  213 (318)
T 3te6_A          175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS  213 (318)
T ss_dssp             CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence            222 3567788998  68999999999999999999865

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.53  E-value=3.4e-15  Score=111.89  Aligned_cols=153  Identities=20%  Similarity=0.256  Sum_probs=85.3

Q ss_pred             CCchHHHHHHHHH----HHHHHHhc-CcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc-hhhh------
Q psy14616          1 MVGQLQARRAAGV----VLGMIKEG-KIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY-SLEM------   68 (174)
Q Consensus         1 iiG~~~~~~~l~~----~~~~~~~g-~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~------   68 (174)
                      ++|++...+.+..    +...++.. ..+++++||+||||||||++|+++|+.++.  +++.+++.+.+ +...      
T Consensus        35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~i~~~~~~~g~~~~~~~~~  112 (272)
T 1d2n_A           35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICSPDKMIGFSETAKCQA  112 (272)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEECGGGCTTCCHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC--CEEEEeCHHHhcCCchHHHHHH
Confidence            4676655444333    55555532 344579999999999999999999999884  46666554321 1100      


Q ss_pred             -hhhhhhhh-hccCcEEEEEEeccCCCCC--CccceeEEEeccchhhhc----cccccchhhhcccCCCCCCCH-Hhhcc
Q psy14616         69 -NKTEEETE-MIEGEVVEIQIERPATGLG--SKVGKLTMKTTEMETSYD----LGAKMIEAIGTAYSSPHGIPI-DLLDR  139 (174)
Q Consensus        69 -~~~~~~~~-~~~~~i~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~-~l~sR  139 (174)
                       ....+.+. ..++.++++|+|.+.....  ...+...+  ..+....+    ....++ .++++ |.+..+++ .+.+|
T Consensus       113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l--~~L~~~~~~~~~~~~~~~-ii~tt-n~~~~l~~~~l~~r  188 (272)
T 1d2n_A          113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVL--QALLVLLKKAPPQGRKLL-IIGTT-SRKDVLQEMEMLNA  188 (272)
T ss_dssp             HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHH--HHHHHHTTCCCSTTCEEE-EEEEE-SCHHHHHHTTCTTT
T ss_pred             HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHH--HHHHHHhcCccCCCCCEE-EEEec-CChhhcchhhhhcc
Confidence             00001111 1234566678877633211  01111000  00111111    112222 15555 67666666 68899


Q ss_pred             e-eeEecCCCCH-HHHHHHHHH
Q psy14616        140 M-VIIPTQPYQD-EEIQAILKI  159 (174)
Q Consensus       140 ~-~~i~~~~~~~-~e~~~il~~  159 (174)
                      | ..++++++++ +++.+++..
T Consensus       189 f~~~i~~p~l~~r~~i~~i~~~  210 (272)
T 1d2n_A          189 FSTTIHVPNIATGEQLLEALEL  210 (272)
T ss_dssp             SSEEEECCCEEEHHHHHHHHHH
T ss_pred             cceEEcCCCccHHHHHHHHHHh
Confidence            7 8899999987 888888766

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.53  E-value=4.4e-14  Score=102.86  Aligned_cols=146  Identities=20%  Similarity=0.231  Sum_probs=82.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc--------------chh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI--------------YSL   66 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~--------------~~~   66 (174)
                      ++|++.+++.+   ...+..+..+ +.++|+||||+|||++++.+++.+++........+..+              ...
T Consensus        25 ~~g~~~~~~~l---~~~l~~~~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (250)
T 1njg_A           25 VVGQEHVLTAL---ANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI  100 (250)
T ss_dssp             CCSCHHHHHHH---HHHHHHTCCC-SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred             HhCcHHHHHHH---HHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence            57888888544   4445566544 68999999999999999999998854322111110000              000


Q ss_pred             h------hhhhhhhhhh--------ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         67 E------MNKTEEETEM--------IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        67 ~------~~~~~~~~~~--------~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                      .      ........+.        .+..++++++|.+ +.   .....      +....+.  .+..+  +.++ +...
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-~~---~~~~~------l~~~l~~~~~~~~~--i~~t-~~~~  167 (250)
T 1njg_A          101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNA------LLKTLEEPPEHVKF--LLAT-TDPQ  167 (250)
T ss_dssp             ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-CH---HHHHH------HHHHHHSCCTTEEE--EEEE-SCGG
T ss_pred             cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc-cH---HHHHH------HHHHHhcCCCceEE--EEEe-CChH
Confidence            0      0000000000        0123344455443 11   11110      1111111  12223  4455 5667


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .+++++.+|+..+++++++.+++.++++..+.+
T Consensus       168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~  200 (250)
T 1njg_A          168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE  200 (250)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999999999987643

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.53  E-value=5.6e-15  Score=114.13  Aligned_cols=145  Identities=14%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC----CCCeeeecccccchh-hhhhhh-hh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP----DTPFTSMAGSEIYSL-EMNKTE-EE   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~-~~~~~~-~~   74 (174)
                      ++|+++++   ..+...++.+..+  +++|+||||||||++|+++|+.+++    ...+..+++++.... .+.... ..
T Consensus        39 i~g~~~~~---~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (353)
T 1sxj_D           39 VTAQDHAV---TVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF  113 (353)
T ss_dssp             CCSCCTTH---HHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred             hhCCHHHH---HHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence            58999888   4455555666544  5999999999999999999998742    234555665442211 111100 10


Q ss_pred             hh------------hcc-C---cEEEEEEeccCCCCCCccceeEEEeccchhhhc-c-ccccchhhhcccCCCCCCCHHh
Q psy14616         75 TE------------MIE-G---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYD-L-GAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        75 ~~------------~~~-~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                      ..            ..+ +   .++++|+|.+ +.   ..++.      +....+ . .+..+  +.++ |.+..+++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-~~---~~~~~------Ll~~le~~~~~~~~--il~~-~~~~~l~~~l  180 (353)
T 1sxj_D          114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSM-TA---DAQSA------LRRTMETYSGVTRF--CLIC-NYVTRIIDPL  180 (353)
T ss_dssp             HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-CH---HHHHH------HHHHHHHTTTTEEE--EEEE-SCGGGSCHHH
T ss_pred             hhhcccccchhhcccCCCCCceEEEEECCCcc-CH---HHHHH------HHHHHHhcCCCceE--EEEe-CchhhCcchh
Confidence            11            111 1   2333455544 21   11111      111111 1 12223  3344 6777899999


Q ss_pred             hcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        137 LDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       137 ~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++||..+.+.+++.+++.++++..+.+
T Consensus       181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~  207 (353)
T 1sxj_D          181 ASQCSKFRFKALDASNAIDRLRFISEQ  207 (353)
T ss_dssp             HHHSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             hccCceEEeCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999987643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.52  E-value=2.6e-14  Score=110.56  Aligned_cols=41  Identities=22%  Similarity=0.195  Sum_probs=35.0

Q ss_pred             hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      +.++ +.+..+.++++|||.+++|.+++.+++.++++....+
T Consensus       168 Il~t-~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~  208 (354)
T 1sxj_E          168 IMVC-DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN  208 (354)
T ss_dssp             EEEE-SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             EEEe-CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence            4444 5677899999999999999999999999999987644

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.52  E-value=3.2e-14  Score=111.04  Aligned_cols=151  Identities=14%  Similarity=0.121  Sum_probs=90.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC---------CCCeeeecccccc-hhh---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP---------DTPFTSMAGSEIY-SLE---   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~---------~~~~~~~~~~~~~-~~~---   67 (174)
                      ++|+++..+.+..+......+.. +++++|+||||||||++|+.+++.+..         ...++.+++.... ...   
T Consensus        22 l~gr~~~~~~l~~~l~~~~~~~~-~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  100 (384)
T 2qby_B           22 IPFREDILRDAAIAIRYFVKNEV-KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL  100 (384)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTCC-CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCC-CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence            58999888877766655544543 369999999999999999999998711         2456666654322 000   


Q ss_pred             ---hhhh------------hh---h-hh-hc-cC-cEEEEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhc
Q psy14616         68 ---MNKT------------EE---E-TE-MI-EG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGT  124 (174)
Q Consensus        68 ---~~~~------------~~---~-~~-~~-~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~  124 (174)
                         ....            .+   . .+ .. .+ .++++|+|.+....   .+..     .+...... .+..+  |++
T Consensus       101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~---~~~~-----~l~~l~~~~~~~~i--I~~  170 (384)
T 2qby_B          101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR---GGDI-----VLYQLLRSDANISV--IMI  170 (384)
T ss_dssp             HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHST---TSHH-----HHHHHHTSSSCEEE--EEE
T ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCC---CCce-----eHHHHhcCCcceEE--EEE
Confidence               0000            00   0 00 11 12 34455555552210   0111     01111111 33344  555


Q ss_pred             ccCCC--CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        125 AYSSP--HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       125 ~~~~~--~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ++..+  ..+++++.+|+ ..+.|++|+.+++.++++.++.
T Consensus       171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~  211 (384)
T 2qby_B          171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE  211 (384)
T ss_dssp             CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred             ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence            53332  67899999997 8999999999999999999764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.50  E-value=1.6e-13  Score=116.12  Aligned_cols=140  Identities=21%  Similarity=0.195  Sum_probs=78.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      +||+++.++.+..   .+...  ...++||+||||||||++|+++|+.+.+        ...+..++.+   ..+.+..+
T Consensus       182 iiG~~~~i~~l~~---~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g---~~~~G~~e  253 (758)
T 3pxi_A          182 VIGRSKEIQRVIE---VLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFE  253 (758)
T ss_dssp             CCCCHHHHHHHHH---HHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------C
T ss_pred             ccCchHHHHHHHH---HHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc---ccccchHH
Confidence            6899998855544   34443  3469999999999999999999999722        1233333331   11122211


Q ss_pred             -------hhhhhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC----CCCHHhhccee
Q psy14616         73 -------EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH----GIPIDLLDRMV  141 (174)
Q Consensus        73 -------~~~~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~l~sR~~  141 (174)
                             +.+....+.+++  || . ..   +.++....      ........+  |++++....    .+++++++||+
T Consensus       254 ~~l~~~~~~~~~~~~~iLf--iD-~-~~---~~~~~L~~------~l~~~~v~~--I~at~~~~~~~~~~~d~al~rRf~  318 (758)
T 3pxi_A          254 DRLKKVMDEIRQAGNIILF--ID-A-AI---DASNILKP------SLARGELQC--IGATTLDEYRKYIEKDAALERRFQ  318 (758)
T ss_dssp             TTHHHHHHHHHTCCCCEEE--EC-C------------CC------CTTSSSCEE--EEECCTTTTHHHHTTCSHHHHSEE
T ss_pred             HHHHHHHHHHHhcCCEEEE--Ec-C-ch---hHHHHHHH------HHhcCCEEE--EeCCChHHHHHHhhccHHHHhhCc
Confidence                   112222233333  44 1 11   11111111      111222333  666633332    68999999999


Q ss_pred             eEecCCCCHHHHHHHHHHHhch
Q psy14616        142 IIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       142 ~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ++.++.|+.++..+|++.....
T Consensus       319 ~i~v~~p~~~~~~~il~~~~~~  340 (758)
T 3pxi_A          319 PIQVDQPSVDESIQILQGLRDR  340 (758)
T ss_dssp             EEECCCCCHHHHHHHHHHTTTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999975543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.50  E-value=5.8e-14  Score=107.67  Aligned_cols=144  Identities=14%  Similarity=0.149  Sum_probs=85.6

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhh-----hh-h-ccCcEE
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEE-----TE-M-IEGEVV   83 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~-~-~~~~i~   83 (174)
                      ..+...++.....+.+++|+||||||||++++++++.+.. ..++..+++..+...........     .. . .++.++
T Consensus        24 ~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~  103 (324)
T 1l8q_A           24 EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLL  103 (324)
T ss_dssp             HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEE
Confidence            4455555554334579999999999999999999998821 24566777665433222222110     01 1 145667


Q ss_pred             EEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHH
Q psy14616         84 EIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAIL  157 (174)
Q Consensus        84 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il  157 (174)
                      ++|+|.+....  ..+...+.  .+....+....+   +.++++++.   .+++++.+||   .++.+++ +.+++.+++
T Consensus       104 iDEi~~l~~~~--~~~~~l~~--~l~~~~~~~~~i---ii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il  175 (324)
T 1l8q_A          104 LDDVQFLSGKE--RTQIEFFH--IFNTLYLLEKQI---ILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII  175 (324)
T ss_dssp             EECGGGGTTCH--HHHHHHHH--HHHHHHHTTCEE---EEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred             EcCcccccCCh--HHHHHHHH--HHHHHHHCCCeE---EEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence            77887762210  11111100  011111112222   344445554   6899999999   7899999 999999999


Q ss_pred             HHHhch
Q psy14616        158 KIRLVK  163 (174)
Q Consensus       158 ~~~l~~  163 (174)
                      +..+..
T Consensus       176 ~~~~~~  181 (324)
T 1l8q_A          176 KEKLKE  181 (324)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            997743

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.47  E-value=6.5e-14  Score=119.91  Aligned_cols=156  Identities=22%  Similarity=0.277  Sum_probs=97.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEM-------   68 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~-------   68 (174)
                      |+||+.+++.+.......+.|..    |..+++|+||||||||++|+++++.+.+ ..+++.++++.+.....       
T Consensus       560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~  639 (854)
T 1qvr_A          560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA  639 (854)
T ss_dssp             SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---
T ss_pred             cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCC
Confidence            68999999888777766665432    2258999999999999999999999833 35677787765543211       


Q ss_pred             ----------hhhhhhhhhccC-cEEEEEEeccCCCCCCccceeEEE--e-----ccchhhhccccccchhhhcccCC--
Q psy14616         69 ----------NKTEEETEMIEG-EVVEIQIERPATGLGSKVGKLTMK--T-----TEMETSYDLGAKMIEAIGTAYSS--  128 (174)
Q Consensus        69 ----------~~~~~~~~~~~~-~i~~~~id~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~i~~~~~~--  128 (174)
                                +.........++ .++++|+|++ +.   +.++..+.  +     .......+..+.++  |+|+ |.  
T Consensus       640 ~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-~~---~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ii--I~ts-n~~~  712 (854)
T 1qvr_A          640 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-HP---DVFNILLQILDDGRLTDSHGRTVDFRNTVI--ILTS-NLGS  712 (854)
T ss_dssp             -----------CHHHHHHHCSSEEEEESSGGGS-CH---HHHHHHHHHHTTTEECCSSSCCEECTTEEE--EEEC-CTTH
T ss_pred             CCCCcCccccchHHHHHHhCCCeEEEEeccccc-CH---HHHHHHHHHhccCceECCCCCEeccCCeEE--EEec-CcCh
Confidence                      111111122233 4555677765 22   11111100  0     00112223444445  5666 43  


Q ss_pred             ------------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 ------------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 ------------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                              ...+.|+|++|| .++.|.+++.+++..|++..+.+
T Consensus       713 ~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~  772 (854)
T 1qvr_A          713 PLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY  772 (854)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence                                    235789999999 88899999999999999987753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.47  E-value=3.8e-13  Score=103.71  Aligned_cols=152  Identities=22%  Similarity=0.256  Sum_probs=85.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc-hhhhhhhhhhhhhc-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY-SLEMNKTEEETEMI-   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-   78 (174)
                      ++||+.+++.+......-+....++.+++|+||||+||||+++++|..+++.  +...++.... ..++....  .... 
T Consensus        27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~~~sg~~~~~~~~l~~~~--~~~~~  102 (334)
T 1in4_A           27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLVKQGDMAAIL--TSLER  102 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCCSHHHHHHHH--HHCCT
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEechHhcCHHHHHHHH--HHccC
Confidence            4799988877766554332222334789999999999999999999999864  3323222111 11111100  1111 


Q ss_pred             cCcEEEEEEeccCCCCCCccceeE-----------EEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEe
Q psy14616         79 EGEVVEIQIERPATGLGSKVGKLT-----------MKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIP  144 (174)
Q Consensus        79 ~~~i~~~~id~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~  144 (174)
                      ...++++++|.+.. .  ....+.           .........  ..+....+  +. +++.+..+++++++|| ..+.
T Consensus       103 ~~v~~iDE~~~l~~-~--~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l--i~-at~~~~~Ls~~l~sR~~l~~~  176 (334)
T 1in4_A          103 GDVLFIDEIHRLNK-A--VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL--VG-ATTRSGLLSSPLRSRFGIILE  176 (334)
T ss_dssp             TCEEEEETGGGCCH-H--HHHHHHHHHHTSCCCC---------------CCCEE--EE-EESCGGGSCHHHHTTCSEEEE
T ss_pred             CCEEEEcchhhcCH-H--HHHHHHHHHHhcccceeeccCcccccccccCCCeEE--EE-ecCCcccCCHHHHHhcCceee
Confidence            23345556665521 1  000010           000000000  01112222  44 3467788999999999 5789


Q ss_pred             cCCCCHHHHHHHHHHHhc
Q psy14616        145 TQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       145 ~~~~~~~e~~~il~~~l~  162 (174)
                      +++++.+++.+++++...
T Consensus       177 Ld~~~~~~l~~iL~~~~~  194 (334)
T 1in4_A          177 LDFYTVKELKEIIKRAAS  194 (334)
T ss_dssp             CCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999998653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.45  E-value=2.6e-13  Score=99.06  Aligned_cols=140  Identities=17%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhhhhhhh-ccCcEEEEEEec
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTEEETEM-IEGEVVEIQIER   89 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~id~   89 (174)
                      ..+......+  .+++++|+||||||||++|+++++.+... ..+..+++..+..... ..  .... .++.++++++|.
T Consensus        41 ~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~vliiDe~~~  115 (242)
T 3bos_A           41 GALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST-AL--LEGLEQFDLICIDDVDA  115 (242)
T ss_dssp             HHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG-GG--GTTGGGSSEEEEETGGG
T ss_pred             HHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH-HH--HHhccCCCEEEEecccc
Confidence            4444444544  34799999999999999999999987432 3345555544332110 00  0111 134566667766


Q ss_pred             cCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCC---CCCHHhhcce---eeEecCCCCHHHHHHHHHHHhc
Q psy14616         90 PATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPH---GIPIDLLDRM---VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      +....  ..+...+  ..+....+.....+  +.+++..+.   .+.+++.+||   .++++++++.+++.++++..+.
T Consensus       116 ~~~~~--~~~~~l~--~~l~~~~~~~~~~i--i~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~  188 (242)
T 3bos_A          116 VAGHP--LWEEAIF--DLYNRVAEQKRGSL--IVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA  188 (242)
T ss_dssp             GTTCH--HHHHHHH--HHHHHHHHHCSCEE--EEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred             ccCCH--HHHHHHH--HHHHHHHHcCCCeE--EEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence            52210  0011100  01111111122212  344433433   4569999999   8999999999999999998764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.45  E-value=8.2e-14  Score=119.27  Aligned_cols=153  Identities=19%  Similarity=0.174  Sum_probs=81.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      +||+++.++.+   ...+..+.  .++++|+||||||||++|+++|+.+..        ...++.++.+.+..  .+.+.
T Consensus       172 viGr~~~i~~l---~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~  246 (854)
T 1qvr_A          172 VIGRDEEIRRV---IQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE  246 (854)
T ss_dssp             CCSCHHHHHHH---HHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred             cCCcHHHHHHH---HHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchH
Confidence            58988777444   44444433  358999999999999999999998821        24456666555431  12222


Q ss_pred             hh-------hhhhhc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhc
Q psy14616         71 TE-------EETEMI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLD  138 (174)
Q Consensus        71 ~~-------~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~s  138 (174)
                      ..       ......  +..++++|+|.+.... ...+..... ..+..........+  |++++...   ..+++++.+
T Consensus       247 ~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~-~~~g~~~~~-~~L~~~l~~~~i~~--I~at~~~~~~~~~~d~aL~r  322 (854)
T 1qvr_A          247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAG-KAEGAVDAG-NMLKPALARGELRL--IGATTLDEYREIEKDPALER  322 (854)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHHTTCCCE--EEEECHHHHHHHTTCTTTCS
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccC-CccchHHHH-HHHHHHHhCCCeEE--EEecCchHHhhhccCHHHHh
Confidence            21       111111  1234556777663221 111111111 11122222233333  55553222   257899999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ||+.+.+++|+.++..+|++..+.
T Consensus       323 Rf~~i~l~~p~~~e~~~iL~~~~~  346 (854)
T 1qvr_A          323 RFQPVYVDEPTVEETISILRGLKE  346 (854)
T ss_dssp             CCCCEEECCCCHHHHHHHHHHHHH
T ss_pred             CCceEEeCCCCHHHHHHHHHhhhh
Confidence            999899999999999999987654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.44  E-value=6.5e-14  Score=98.36  Aligned_cols=140  Identities=19%  Similarity=0.155  Sum_probs=73.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccchh--hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYSL--EMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~~--~~~~   70 (174)
                      ++|++...+.   +.+.+..+.  ..+++|+||||||||++|+++++.+..        ...+..++...+...  ..+.
T Consensus        24 ~~g~~~~~~~---l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (187)
T 2p65_A           24 VIGRDTEIRR---AIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGD   98 (187)
T ss_dssp             CCSCHHHHHH---HHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHH
T ss_pred             hhcchHHHHH---HHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhH
Confidence            5788877644   444444432  468999999999999999999998832        233444443332210  1111


Q ss_pred             hh-------hhhhhc--cCcEEEEEEeccCCCCC-CccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHh
Q psy14616         71 TE-------EETEMI--EGEVVEIQIERPATGLG-SKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDL  136 (174)
Q Consensus        71 ~~-------~~~~~~--~~~i~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l  136 (174)
                      ..       ......  +..++++|+|.+..... ...+. .+. ..+....+.....+  +++++...    ..+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~-~~l~~~~~~~~~~i--i~~~~~~~~~~~~~~~~~l  174 (187)
T 2p65_A           99 FEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGAL-DAG-NILKPMLARGELRC--IGATTVSEYRQFIEKDKAL  174 (187)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSC-CTH-HHHHHHHHTTCSCE--EEEECHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccch-HHH-HHHHHHHhcCCeeE--EEecCHHHHHHHHhccHHH
Confidence            11       111111  12455557776632211 01011 000 01111222233334  55553222    3689999


Q ss_pred             hcceeeEecCCCC
Q psy14616        137 LDRMVIIPTQPYQ  149 (174)
Q Consensus       137 ~sR~~~i~~~~~~  149 (174)
                      ++||..+.+++|+
T Consensus       175 ~~R~~~i~i~~p~  187 (187)
T 2p65_A          175 ERRFQQILVEQPS  187 (187)
T ss_dssp             HHHEEEEECCSCC
T ss_pred             HHhcCcccCCCCC
Confidence            9999889988774

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.43  E-value=1.1e-13  Score=107.88  Aligned_cols=154  Identities=18%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh-------CCCCCeeeecccccchhh------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL-------GPDTPFTSMAGSEIYSLE------   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l-------~~~~~~~~~~~~~~~~~~------   67 (174)
                      ++|++...+.+..+......+. .+.+++|+||||||||++++.+++.+       +....++.+++....+..      
T Consensus        21 ~~gr~~~~~~l~~~l~~~~~~~-~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l   99 (387)
T 2v1u_A           21 LPHREAELRRLAEVLAPALRGE-KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI   99 (387)
T ss_dssp             CTTCHHHHHHHHHTTGGGTSSC-CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCC-CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence            5788888866555443221122 34799999999999999999999988       223556666654322110      


Q ss_pred             --------------hhhhhhh-hhh--ccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhc---cccccchhhhc
Q psy14616         68 --------------MNKTEEE-TEM--IEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYD---LGAKMIEAIGT  124 (174)
Q Consensus        68 --------------~~~~~~~-~~~--~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~  124 (174)
                                    .....+. ...  ..+   .++++|+|.+....  ..+.....  .......   ..+..+  |++
T Consensus       100 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--~~~~~l~~--l~~~~~~~~~~~~~~~--I~~  173 (387)
T 2v1u_A          100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--GGQDLLYR--ITRINQELGDRVWVSL--VGI  173 (387)
T ss_dssp             HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--THHHHHHH--HHHGGGCC-----CEE--EEE
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--CCChHHHh--HhhchhhcCCCceEEE--EEE
Confidence                          0000000 001  123   33444555442210  01111000  0000111   122233  555


Q ss_pred             ccCCC---CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616        125 AYSSP---HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       125 ~~~~~---~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      + |..   ..+++.+.+||  ..+.|++|+.+++.++++..+.
T Consensus       174 t-~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~  215 (387)
T 2v1u_A          174 T-NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE  215 (387)
T ss_dssp             C-SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred             E-CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence            5 333   67899999999  6899999999999999998774

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.43  E-value=2.2e-13  Score=108.73  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=88.2

Q ss_pred             CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC---CCCCeeeecccccchhhhhhhhhh----
Q psy14616          2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG---PDTPFTSMAGSEIYSLEMNKTEEE----   74 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~~----   74 (174)
                      +|+.... +...+....+.... +++++|+||||+|||++|+++++.+.   ....+..+++..+...........    
T Consensus       109 ~g~~n~~-a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~  186 (440)
T 2z4s_A          109 VGPGNSF-AYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE  186 (440)
T ss_dssp             CCTTTHH-HHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCchHH-HHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHH
Confidence            3644332 33445555555332 57999999999999999999999882   124466666655433222221110    


Q ss_pred             -hhh---ccCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEe
Q psy14616         75 -TEM---IEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIP  144 (174)
Q Consensus        75 -~~~---~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~  144 (174)
                       ...   .++.++++|+|.+....  ..+...+.  .+....+....+   +.++.+.+..   +++++++||   .++.
T Consensus       187 ~~~~~~~~~~vL~IDEi~~l~~~~--~~q~~l~~--~l~~l~~~~~~i---Iitt~~~~~~l~~l~~~L~sR~~~g~~i~  259 (440)
T 2z4s_A          187 FREKYRKKVDILLIDDVQFLIGKT--GVQTELFH--TFNELHDSGKQI---VICSDREPQKLSEFQDRLVSRFQMGLVAK  259 (440)
T ss_dssp             HHHHHTTTCSEEEEECGGGGSSCH--HHHHHHHH--HHHHHHTTTCEE---EEEESSCGGGCSSCCHHHHHHHHSSBCCB
T ss_pred             HHHHhcCCCCEEEEeCcccccCCh--HHHHHHHH--HHHHHHHCCCeE---EEEECCCHHHHHHHHHHHHhhccCCeEEE
Confidence             111   23456667777763210  11111111  011111222222   3355455543   889999999   6899


Q ss_pred             cCCCCHHHHHHHHHHHhch
Q psy14616        145 TQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       145 ~~~~~~~e~~~il~~~l~~  163 (174)
                      +.+|+.+++..+++..+..
T Consensus       260 l~~p~~e~r~~iL~~~~~~  278 (440)
T 2z4s_A          260 LEPPDEETRKSIARKMLEI  278 (440)
T ss_dssp             CCCCCHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHH
Confidence            9999999999999987643

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.39  E-value=2.5e-14  Score=97.47  Aligned_cols=131  Identities=11%  Similarity=0.056  Sum_probs=74.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhhhhccC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEG   80 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (174)
                      ++|++.+.+.+......+..   .+.+++|+||||||||++|+++++..+   +++.+++..+.........+.+  ..+
T Consensus         6 ~iG~s~~~~~l~~~~~~~~~---~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~a--~~~   77 (143)
T 3co5_A            6 KLGNSAAIQEMNREVEAAAK---RTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQKA--EGG   77 (143)
T ss_dssp             --CCCHHHHHHHHHHHHHHT---CSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHHT--TTS
T ss_pred             ceeCCHHHHHHHHHHHHHhC---CCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHhC--CCC
Confidence            57888888666655544332   236899999999999999999998775   6777777665432211111111  246


Q ss_pred             cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC----CCHHhhcce--eeEecCCC
Q psy14616         81 EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG----IPIDLLDRM--VIIPTQPY  148 (174)
Q Consensus        81 ~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----l~~~l~sR~--~~i~~~~~  148 (174)
                      .++++|+|.+ +.   +.+...+.  .++... ..+..+  |++++.++..    +.+.+..|+  ..+.++++
T Consensus        78 ~l~lDei~~l-~~---~~q~~Ll~--~l~~~~-~~~~~i--I~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL  142 (143)
T 3co5_A           78 VLYVGDIAQY-SR---NIQTGITF--IIGKAE-RCRVRV--IASCSYAAGSDGISCEEKLAGLFSESVVRIPPL  142 (143)
T ss_dssp             EEEEEECTTC-CH---HHHHHHHH--HHHHHT-TTTCEE--EEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred             eEEEeChHHC-CH---HHHHHHHH--HHHhCC-CCCEEE--EEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence            6778888877 32   22221111  011100 112223  5566433333    556788887  55777775

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.39  E-value=4.6e-13  Score=108.17  Aligned_cols=147  Identities=16%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccc-----ccchhhhhhh-hhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS-----EIYSLEMNKT-EEE   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~-----~~~~~~~~~~-~~~   74 (174)
                      |+|++++++.+....   ..    +.++||+||||||||++|+++|+.++...++....+.     ++++...... ...
T Consensus        24 ivGq~~~i~~l~~al---~~----~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~   96 (500)
T 3nbx_X           24 LYERSHAIRLCLLAA---LS----GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE   96 (500)
T ss_dssp             CSSCHHHHHHHHHHH---HH----TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-------
T ss_pred             hHHHHHHHHHHHHHH---hc----CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhc
Confidence            689999996554433   32    3699999999999999999999998654444443332     1111100000 000


Q ss_pred             h---hh------ccCcEEEEEEeccCCCCCC------ccceeEEEeccchhhhccccccchhhhcccCCC-C--CCCHHh
Q psy14616         75 T---EM------IEGEVVEIQIERPATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP-H--GIPIDL  136 (174)
Q Consensus        75 ~---~~------~~~~i~~~~id~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~--~l~~~l  136 (174)
                      .   ..      .++.++++||+++......      +.+.+..    .......+...+  ++++ |+. .  ...+++
T Consensus        97 g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i----~G~~~~~~~~~i--I~AT-N~lpe~~~~~~aL  169 (500)
T 3nbx_X           97 GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN----GAHVEKIPMRLL--VAAS-NELPEADSSLEAL  169 (500)
T ss_dssp             ---CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC----SSSEEECCCCEE--EEEE-SSCCCTTCTTHHH
T ss_pred             hhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC----CCCcCCcchhhh--hhcc-ccCCCccccHHHH
Confidence            0   01      2234666777665211100      0011111    011122233332  4555 432 2  255799


Q ss_pred             hcce-eeEecCCCCH-HHHHHHHHHHh
Q psy14616        137 LDRM-VIIPTQPYQD-EEIQAILKIRL  161 (174)
Q Consensus       137 ~sR~-~~i~~~~~~~-~e~~~il~~~l  161 (174)
                      ++|| ..+.+++++. ++...|++...
T Consensus       170 ldRF~~~i~v~~p~~~ee~~~IL~~~~  196 (500)
T 3nbx_X          170 YDRMLIRLWLDKVQDKANFRSMLTSQQ  196 (500)
T ss_dssp             HTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence            9999 6688898886 67778887643

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.38  E-value=1.3e-12  Score=97.41  Aligned_cols=153  Identities=15%  Similarity=0.200  Sum_probs=85.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhh-h-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNK-T-------   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~-~-------   71 (174)
                      +||++.+.+.+......+..   .+.+++|+||||||||++|+++++.++.. .+++.++++.+....... .       
T Consensus         8 ~ig~~~~~~~~~~~~~~~~~---~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~   84 (265)
T 2bjv_A            8 LLGEANSFLEVLEQVSHLAP---LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA   84 (265)
T ss_dssp             --CCCHHHHHHHHHHHHHTT---SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---
T ss_pred             ceeCCHHHHHHHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccc
Confidence            57888777555443333222   24699999999999999999999988643 568888877653211110 0       


Q ss_pred             -----hhhh---h-hccCcEEEEEEeccCCCCCCccceeEEE--ecc----chhhhc-cccccchhhhcccCCC------
Q psy14616         72 -----EEET---E-MIEGEVVEIQIERPATGLGSKVGKLTMK--TTE----METSYD-LGAKMIEAIGTAYSSP------  129 (174)
Q Consensus        72 -----~~~~---~-~~~~~i~~~~id~~~~~~~~~~~~~~~~--~~~----~~~~~~-~~~~~~~~i~~~~~~~------  129 (174)
                           ....   + ...+.++++|+|.+ +.   +.+...+.  +..    ...... ..+..+  |+++ |..      
T Consensus        85 ~~g~~~~~~~~l~~a~~~~l~lDEi~~l-~~---~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i--I~at-n~~~~~~~~  157 (265)
T 2bjv_A           85 FTGAQKRHPGRFERADGGTLFLDELATA-PM---MVQEKLLRVIEYGELERVGGSQPLQVNVRL--VCAT-NADLPAMVN  157 (265)
T ss_dssp             ------CCCCHHHHTTTSEEEEESGGGS-CH---HHHHHHHHHHHHCEECCCCC--CEECCCEE--EEEE-SSCHHHHHH
T ss_pred             cccccccccchhhhcCCcEEEEechHhc-CH---HHHHHHHHHHHhCCeecCCCcccccCCeEE--EEec-CcCHHHHHH
Confidence                 0000   0 11345677778776 22   11211100  000    000000 012222  5566 443      


Q ss_pred             -CCCCHHhhcce--eeEecCCCCH--HHHHHHHHHHhch
Q psy14616        130 -HGIPIDLLDRM--VIIPTQPYQD--EEIQAILKIRLVK  163 (174)
Q Consensus       130 -~~l~~~l~sR~--~~i~~~~~~~--~e~~~il~~~l~~  163 (174)
                       ..+.++|.+||  ..+.++++.+  +++..+++.++..
T Consensus       158 ~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~  196 (265)
T 2bjv_A          158 EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQ  196 (265)
T ss_dssp             HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHH
Confidence             34789999999  4688899885  7888777766543

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.38  E-value=6.9e-13  Score=102.28  Aligned_cols=46  Identities=28%  Similarity=0.316  Sum_probs=34.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++|++.+++.+...   ...+.  ..++||+||||||||++|+++++.++.
T Consensus        26 i~G~~~~~~~l~~~---~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~~   71 (350)
T 1g8p_A           26 IVGQEDMKLALLLT---AVDPG--IGGVLVFGDRGTGKSTAVRALAALLPE   71 (350)
T ss_dssp             SCSCHHHHHHHHHH---HHCGG--GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             ccChHHHHHHHHHH---hhCCC--CceEEEECCCCccHHHHHHHHHHhCcc
Confidence            68999987653322   22222  247999999999999999999999863

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.36  E-value=1.1e-12  Score=89.35  Aligned_cols=132  Identities=18%  Similarity=0.100  Sum_probs=74.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhhhhh-hhc
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTEEET-EMI   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~   78 (174)
                      +||++...+.+......+.   ..+.+++|+||||||||++|+++++.... ..+++ +++..+...  ....... ...
T Consensus         3 iiG~s~~~~~~~~~~~~~a---~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~~a~   76 (145)
T 3n70_A            3 LIGRSEWINQYRRRLQQLS---ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--PQLNDFIALAQ   76 (145)
T ss_dssp             -CCSSHHHHHHHHHHHHHT---TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--SCHHHHHHHHT
T ss_pred             ceeCCHHHHHHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--hhhhcHHHHcC
Confidence            5788887755554443332   23468999999999999999999998733 34566 776654332  0000111 123


Q ss_pred             cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC------CCCCHHhhcce--eeEecCCC
Q psy14616         79 EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP------HGIPIDLLDRM--VIIPTQPY  148 (174)
Q Consensus        79 ~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~l~sR~--~~i~~~~~  148 (174)
                      .+.++++|+|.+ +.   +.+...+.      .......-+..|++++.++      ..+.+.+..|+  ..+.++++
T Consensus        77 ~g~l~ldei~~l-~~---~~q~~Ll~------~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL  144 (145)
T 3n70_A           77 GGTLVLSHPEHL-TR---EQQYHLVQ------LQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL  144 (145)
T ss_dssp             TSCEEEECGGGS-CH---HHHHHHHH------HHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred             CcEEEEcChHHC-CH---HHHHHHHH------HHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence            467788888887 32   22211100      0011111112255663322      35788999998  56778775

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.35  E-value=1.2e-12  Score=110.74  Aligned_cols=154  Identities=19%  Similarity=0.132  Sum_probs=82.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC--------CCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD--------TPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~--------~~~~~~~~~~~~~--~~~~~   70 (174)
                      +||++..++.+.   ..+...  .+.+++|+||||||||++|+++|+.+.+.        ..+..++.+.+..  .+.+.
T Consensus       188 ~iGr~~~i~~l~---~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~  262 (758)
T 1r6b_X          188 LIGREKELERAI---QVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD  262 (758)
T ss_dssp             CCSCHHHHHHHH---HHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred             ccCCHHHHHHHH---HHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence            589888775544   333433  34699999999999999999999987321        1233333322221  11111


Q ss_pred             hh-------hhhhhc-cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCC----CCCCCHHhhc
Q psy14616         71 TE-------EETEMI-EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSS----PHGIPIDLLD  138 (174)
Q Consensus        71 ~~-------~~~~~~-~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~l~s  138 (174)
                      .+       +..... ++.++++|+|.+........+..... ..+..........+  |++++..    ...+++++.+
T Consensus       263 ~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~-~~L~~~l~~~~~~~--I~at~~~~~~~~~~~d~aL~~  339 (758)
T 1r6b_X          263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA-NLIKPLLSSGKIRV--IGSTTYQEFSNIFEKDRALAR  339 (758)
T ss_dssp             HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHH-HHHSSCSSSCCCEE--EEEECHHHHHCCCCCTTSSGG
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHH-HHHHHHHhCCCeEE--EEEeCchHHhhhhhcCHHHHh
Confidence            11       111111 23344445555532211110110000 00111112223333  5555321    3457899999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHhc
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ||..+.++.|+.++..++++....
T Consensus       340 Rf~~i~v~~p~~~e~~~il~~l~~  363 (758)
T 1r6b_X          340 RFQKIDITEPSIEETVQIINGLKP  363 (758)
T ss_dssp             GEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987553

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.28  E-value=1.1e-11  Score=94.31  Aligned_cols=153  Identities=16%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhh---------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNK---------   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~---------   70 (174)
                      +||++.+.+.+......+.   ..+.++||+||||||||++|+++++...+ ..+++.++++.+....+..         
T Consensus         4 iig~s~~~~~~~~~~~~~a---~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~   80 (304)
T 1ojl_A            4 MIGSSPAMQHLLNEIAMVA---PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGA   80 (304)
T ss_dssp             CCCCSHHHHHHHHHHHHHC---STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSC
T ss_pred             cEECCHHHHHHHHHHHHHh---CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccc
Confidence            5788887766555444332   23469999999999999999999998743 3567788876653311110         


Q ss_pred             ----hhhhh---hh-ccCcEEEEEEeccCCCCCCccceeEEE--ecc-chh---hhccccccchhhhcccCCC-------
Q psy14616         71 ----TEEET---EM-IEGEVVEIQIERPATGLGSKVGKLTMK--TTE-MET---SYDLGAKMIEAIGTAYSSP-------  129 (174)
Q Consensus        71 ----~~~~~---~~-~~~~i~~~~id~~~~~~~~~~~~~~~~--~~~-~~~---~~~~~~~~~~~i~~~~~~~-------  129 (174)
                          .....   +. ..|.++++|+|.+ +.   ..+...+.  ... ...   .... +.-+..|+++ |..       
T Consensus        81 ~tg~~~~~~g~~~~a~~g~L~LDEi~~l-~~---~~q~~Ll~~l~~~~~~~~g~~~~~-~~~~riI~at-n~~l~~~v~~  154 (304)
T 1ojl_A           81 FTGADKRREGRFVEADGGTLFLDEIGDI-SP---LMQVRLLRAIQEREVQRVGSNQTI-SVDVRLIAAT-HRDLAEEVSA  154 (304)
T ss_dssp             CC---CCCCCHHHHHTTSEEEEESCTTC-CH---HHHHHHHHHHHSSBCCBTTBCCCC-BCCCEEEEEE-SSCHHHHHHH
T ss_pred             cCchhhhhcCHHHhcCCCEEEEeccccC-CH---HHHHHHHHHHhcCEeeecCCcccc-cCCeEEEEec-CccHHHHHHh
Confidence                00000   11 1345667777776 22   11211100  000 000   0000 1112225565 443       


Q ss_pred             CCCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhc
Q psy14616        130 HGIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLV  162 (174)
Q Consensus       130 ~~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~  162 (174)
                      ..+.+.|.+|+  ..+.++++.  .+++..+++..+.
T Consensus       155 g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~  191 (304)
T 1ojl_A          155 GRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR  191 (304)
T ss_dssp             TSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred             CCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence            34788999998  457788988  6788888877654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.26  E-value=7.8e-13  Score=109.09  Aligned_cols=48  Identities=21%  Similarity=0.350  Sum_probs=35.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc---------CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI---------AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~---------~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |+||+++++++...   +..|..         ...++||+||||||||++|+++|+.++.
T Consensus       297 I~G~e~vk~al~~~---l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r  353 (595)
T 3f9v_A          297 IYGHWELKEALALA---LFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR  353 (595)
T ss_dssp             TSCCHHHHHHHTTT---TTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred             hcChHHHHHHHHHH---HhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC
Confidence            68999999665432   233310         1128999999999999999999998864

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.26  E-value=2.4e-12  Score=100.10  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=83.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC----CCCeeeecccccchh-----h----
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP----DTPFTSMAGSEIYSL-----E----   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~-----~----   67 (174)
                      ++|++...+.+..+......+. .++.++|+||||||||++++.+++.+..    ...++.+++......     .    
T Consensus        22 ~~gr~~e~~~l~~~l~~~~~~~-~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~  100 (386)
T 2qby_A           22 LPHREDQIRKIASILAPLYREE-KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLES  100 (386)
T ss_dssp             CTTCHHHHHHHHHSSGGGGGTC-CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred             CCChHHHHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            5788888755554442221232 3479999999999999999999998721    234555554321110     0    


Q ss_pred             -----------hhhhh----hhhhhc--cCcEEEEEEeccCCCCCCccceeEEEeccchhhh---ccccccchhhhcccC
Q psy14616         68 -----------MNKTE----EETEMI--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSY---DLGAKMIEAIGTAYS  127 (174)
Q Consensus        68 -----------~~~~~----~~~~~~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~  127 (174)
                                 .....    ......  +..++++|+|.+..........      .+....   ...+..+  |++++.
T Consensus       101 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~------~l~~~~~~~~~~~~~~--I~~~~~  172 (386)
T 2qby_A          101 LDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILY------KLSRINSEVNKSKISF--IGITND  172 (386)
T ss_dssp             TSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHH------HHHHHHHSCCC--EEE--EEEESC
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHH------HHhhchhhcCCCeEEE--EEEECC
Confidence                       00000    000001  2234555665552211000000      000001   1122333  445522


Q ss_pred             CC--CCCCHHhhcce--eeEecCCCCHHHHHHHHHHHhc
Q psy14616        128 SP--HGIPIDLLDRM--VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       128 ~~--~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      ..  ..+++.+.+||  ..+.+++++.+++.++++..+.
T Consensus       173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~  211 (386)
T 2qby_A          173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ  211 (386)
T ss_dssp             GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred             CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence            22  45788999999  6899999999999999998664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.25  E-value=3.4e-11  Score=93.83  Aligned_cols=154  Identities=16%  Similarity=0.092  Sum_probs=87.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcC-CceEEEEcCCCCcHHHHHHHHHHHhCCC--CCeeeecccccchh--hhhhhh---
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIA-GRAILLAGQPGTGKTAIAMGLAQALGPD--TPFTSMAGSEIYSL--EMNKTE---   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~-~~~~ll~GppG~GKT~la~~la~~l~~~--~~~~~~~~~~~~~~--~~~~~~---   72 (174)
                      ++|++...+.+..+......+..+ .++++|+||||||||++++.+++.+...  ..++.+++......  ......   
T Consensus        19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l   98 (389)
T 1fnn_A           19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSL   98 (389)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence            589998887777666554444433 1289999999999999999999998543  45566664432210  000000   


Q ss_pred             ---------hhhh-------h--ccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhc--cccccchhhhcccCCC
Q psy14616         73 ---------EETE-------M--IEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYD--LGAKMIEAIGTAYSSP  129 (174)
Q Consensus        73 ---------~~~~-------~--~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~  129 (174)
                               ...+       .  ..+   .++++|+|.+ +.   ......+.  .+.....  ..+..+  |+++ +.+
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~---~~~~~L~~--~~~~~~~~~~~~~~i--I~~~-~~~  169 (389)
T 1fnn_A           99 NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-AP---DILSTFIR--LGQEADKLGAFRIAL--VIVG-HND  169 (389)
T ss_dssp             TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CH---HHHHHHHH--HTTCHHHHSSCCEEE--EEEE-SST
T ss_pred             CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-ch---HHHHHHHH--HHHhCCCCCcCCEEE--EEEE-CCc
Confidence                     0000       0  012   3344455544 11   11110000  0000000  012233  4444 344


Q ss_pred             ---CCCCHHhhccee--eEecCCCCHHHHHHHHHHHhch
Q psy14616        130 ---HGIPIDLLDRMV--IIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 ---~~l~~~l~sR~~--~i~~~~~~~~e~~~il~~~l~~  163 (174)
                         ..+.+.+.+||.  .+.|++|+.+++.++++..+..
T Consensus       170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~  208 (389)
T 1fnn_A          170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA  208 (389)
T ss_dssp             HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred             hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence               568899999994  7999999999999999987643

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=99.13  E-value=2.9e-10  Score=84.59  Aligned_cols=40  Identities=35%  Similarity=0.370  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+..+++....+..+++|+||||||||++|+++|+.++
T Consensus        90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A           90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3444444443223346899999999999999999999753

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.98  E-value=3.3e-09  Score=98.94  Aligned_cols=133  Identities=16%  Similarity=0.165  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hhhhh-hhhhh--------h-c---cCcEEEEEEecc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EMNKT-EEETE--------M-I---EGEVVEIQIERP   90 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--------~-~---~~~i~~~~id~~   90 (174)
                      ++++||+||||||||++|+.+...+. ...+..++.+...+. .+... ....+        . .   .|+-.++++|++
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~~-~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNSS-LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSCS-SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcCC-CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccc
Confidence            47999999999999999966655442 234445554332221 11111 11100        0 1   233345566664


Q ss_pred             ----CCCCCCccceeEEE----------eccchhhhccccccchhhhcccCCC-----CCCCHHhhcceeeEecCCCCHH
Q psy14616         91 ----ATGLGSKVGKLTMK----------TTEMETSYDLGAKMIEAIGTAYSSP-----HGIPIDLLDRMVIIPTQPYQDE  151 (174)
Q Consensus        91 ----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~l~sR~~~i~~~~~~~~  151 (174)
                          .+.++... .+.+.          +..........+..+  +|++ |++     ..+++++++||.++.++.|+.+
T Consensus      1346 nmp~~d~yg~q~-~lelLRq~le~gg~yd~~~~~~~~~~~i~l--IaA~-Npp~~gGR~~l~~rllRrf~vi~i~~P~~~ 1421 (2695)
T 4akg_A         1346 NLPKLDKYGSQN-VVLFLRQLMEKQGFWKTPENKWVTIERIHI--VGAC-NPPTDPGRIPMSERFTRHAAILYLGYPSGK 1421 (2695)
T ss_dssp             TCSCCCSSSCCH-HHHHHHHHHHTSSEECTTTCCEEEEESEEE--EEEE-CCTTSTTCCCCCHHHHTTEEEEECCCCTTT
T ss_pred             ccccccccCchh-HHHHHHHHHhcCCEEEcCCCcEEEecCEEE--EEec-CCCccCCCccCChhhhheeeEEEeCCCCHH
Confidence                11111110 01000          000001111122233  4555 787     4799999999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy14616        152 EIQAILKIRLV  162 (174)
Q Consensus       152 e~~~il~~~l~  162 (174)
                      ++.+|+...+.
T Consensus      1422 ~l~~I~~~il~ 1432 (2695)
T 4akg_A         1422 SLSQIYEIYYK 1432 (2695)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.72  E-value=7.9e-09  Score=82.39  Aligned_cols=46  Identities=17%  Similarity=0.137  Sum_probs=33.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcC---cCCceEEEEcCCCCcHHHHHHHH-HHHhC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGK---IAGRAILLAGQPGTGKTAIAMGL-AQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~---~~~~~~ll~GppG~GKT~la~~l-a~~l~   50 (174)
                      |+||+++|+++....   -.|.   ...-|+||.|+||| ||.+|+++ ++.+.
T Consensus       215 I~G~e~vK~aLll~L---~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p  264 (506)
T 3f8t_A          215 LPGAEEVGKMLALQL---FSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP  264 (506)
T ss_dssp             STTCHHHHHHHHHHH---TTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS
T ss_pred             cCCCHHHHHHHHHHH---cCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC
Confidence            689999997766555   2221   00128999999999 99999999 66554

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.63  E-value=4.2e-08  Score=70.17  Aligned_cols=42  Identities=17%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+..+..+++. ....++++|+||||||||++|.++|+.+.
T Consensus        42 ~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           42 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455666666653 32245799999999999999999999985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.63  E-value=6.6e-08  Score=68.80  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhcCcC--CceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccc
Q psy14616          9 RAAGVVLGMIKEGKIA--GRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSE   62 (174)
Q Consensus         9 ~~l~~~~~~~~~g~~~--~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~   62 (174)
                      .++..+..+++.....  +.+++|+||||||||++|++++..+... ..+..+++..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~   92 (202)
T 2w58_A           36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE   92 (202)
T ss_dssp             HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence            3445555666654221  2699999999999999999999988322 3344444433

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=98.62  E-value=9e-08  Score=74.62  Aligned_cols=156  Identities=16%  Similarity=0.168  Sum_probs=87.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhh---------h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNK---------T   71 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~---------~   71 (174)
                      ++|+......+......+...   ...++++|++||||+.+|+++.+..++...|+.++++.+.......         .
T Consensus       131 ~ig~s~~~~~~~~~~~~~a~~---~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~  207 (368)
T 3dzd_A          131 FVGEHPKILEIKRLIPKIAKS---KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAF  207 (368)
T ss_dssp             CCCCSHHHHHHHHHHHHHHTS---CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSS
T ss_pred             ccccchHHHHHHhhhhhhhcc---chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccccc
Confidence            356666555554444444332   3479999999999999999999988776668888887653211100         0


Q ss_pred             hh----h---hhh-ccCcEEEEEEeccCCCCCCcccee--EEEe-ccchhhhc--cccccchhhhcccCCC------CCC
Q psy14616         72 EE----E---TEM-IEGEVVEIQIERPATGLGSKVGKL--TMKT-TEMETSYD--LGAKMIEAIGTAYSSP------HGI  132 (174)
Q Consensus        72 ~~----~---~~~-~~~~i~~~~id~~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~~~~~~i~~~~~~~------~~l  132 (174)
                      ..    .   -+. ..|-++++||+++ +.   +.|..  .+.. ........  ..+.-++.|++++.+.      ..+
T Consensus       208 tga~~~~~g~~~~a~~gtlfldei~~l-~~---~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f  283 (368)
T 3dzd_A          208 TGALTRKKGKLELADQGTLFLDEVGEL-DQ---RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF  283 (368)
T ss_dssp             SSCCCCEECHHHHTTTSEEEEETGGGS-CH---HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred             CCcccccCChHhhcCCCeEEecChhhC-CH---HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence            00    0   011 1244666777776 32   22211  1110 00000000  0011122256663332      346


Q ss_pred             CHHhhcce--eeEecCCCCH--HHHHHHHHHHhch
Q psy14616        133 PIDLLDRM--VIIPTQPYQD--EEIQAILKIRLVK  163 (174)
Q Consensus       133 ~~~l~sR~--~~i~~~~~~~--~e~~~il~~~l~~  163 (174)
                      .+.|..|+  ..+.++|+.+  +++..+++..+.+
T Consensus       284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~  318 (368)
T 3dzd_A          284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKK  318 (368)
T ss_dssp             CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred             cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHH
Confidence            78999999  4577999986  8888888877644

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.60  E-value=3.1e-08  Score=67.60  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..++|+||+|+|||+++++++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999987

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.59  E-value=1.5e-07  Score=88.05  Aligned_cols=139  Identities=15%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch-hhhhhhhhhhhhccCcEEEEEEe
Q psy14616         10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS-LEMNKTEEETEMIEGEVVEIQIE   88 (174)
Q Consensus        10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~id   88 (174)
                      ....+..++..+    .+.++.||+|||||++++.+|+.+|..  ++.+++..-.. .+++..-..+.....-+.++|++
T Consensus       634 ~~~tl~~Al~~~----~~~~l~GpaGtGKTe~vk~LA~~lg~~--~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~n  707 (2695)
T 4akg_A          634 GFATLTDSLHQK----YGGCFFGPAGTGKTETVKAFGQNLGRV--VVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFN  707 (2695)
T ss_dssp             HHHHHHHHHHTT----CEEEEECCTTSCHHHHHHHHHHTTTCC--CEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTT
T ss_pred             HHHHHHHHHHhC----CCCcccCCCCCCcHHHHHHHHHHhCCc--EEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhh
Confidence            334444444443    578899999999999999999999965  66677654322 12222111111112224455555


Q ss_pred             ccCCCC-C-C-----------ccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhcceeeEecCCCCHH
Q psy14616         89 RPATGL-G-S-----------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLDRMVIIPTQPYQDE  151 (174)
Q Consensus        89 ~~~~~~-~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~sR~~~i~~~~~~~~  151 (174)
                      ++-... . .           ......+..  ......+.+... .++|. |+.    ..+++++++||..+.+..|+.+
T Consensus       708 r~~~evLs~l~~~l~~i~~al~~~~~~i~~--~g~~i~l~~~~~-vfiT~-NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~  783 (2695)
T 4akg_A          708 RLDEKVLSAVSANIQQIQNGLQVGKSHITL--LEEETPLSPHTA-VFITL-NPGYNGRSELPENLKKSFREFSMKSPQSG  783 (2695)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHTCSEEEC--SSSEEECCTTCE-EEEEE-CCCSSSSCCCCHHHHTTEEEEECCCCCHH
T ss_pred             hcChHHHHHHHHHHHHHHHHHHcCCcEEee--CCcEEecCCCce-EEEEe-CCCccCcccccHHHHhheEEEEeeCCCHH
Confidence            541110 0 0           000001110  111222222222 14444 643    5699999999999999999988


Q ss_pred             HHHHHHH
Q psy14616        152 EIQAILK  158 (174)
Q Consensus       152 e~~~il~  158 (174)
                      .+.+++.
T Consensus       784 ~i~ei~l  790 (2695)
T 4akg_A          784 TIAEMIL  790 (2695)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888853

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.57  E-value=1.1e-07  Score=66.48  Aligned_cols=41  Identities=27%  Similarity=0.454  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          9 RAAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         9 ~~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++..+.+++++-.. .+..++|+||||+||||++++++..+
T Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            334555555554332 35799999999999999999999887

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.47  E-value=1e-06  Score=83.34  Aligned_cols=132  Identities=17%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hh-hhhhhhh--------hh--c---cCcEEEEEEec
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EM-NKTEEET--------EM--I---EGEVVEIQIER   89 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~--------~~--~---~~~i~~~~id~   89 (174)
                      ++++||+||||||||.++..+...+. ...+..++.+..... .+ +..+...        ..  .   .|+-.++++|+
T Consensus      1304 ~~pvLL~GptGtGKT~li~~~L~~l~-~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A         1304 HRPLILCGPPGSGKTMTLTSTLRAFP-DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp             TCCCEEESSTTSSHHHHHHHHGGGCT-TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCC-CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecc
Confidence            46999999999999988766555442 133445554332211 11 1111111        11  1   25566777887


Q ss_pred             cCCCC----CCcccee----------EEEeccchhhhccccccchhhhcccCCC-----CCCCHHhhcceeeEecCCCCH
Q psy14616         90 PATGL----GSKVGKL----------TMKTTEMETSYDLGAKMIEAIGTAYSSP-----HGIPIDLLDRMVIIPTQPYQD  150 (174)
Q Consensus        90 ~~~~~----~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~l~sR~~~i~~~~~~~  150 (174)
                      +.-..    ++. ..+          -+-+..........+..+  +|+ +|++     ..+++.+++||.++.++.|++
T Consensus      1383 iNmp~~D~yGtQ-~~ielLrqlld~~g~yd~~~~~~~~i~d~~~--vaa-mnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~ 1458 (3245)
T 3vkg_A         1383 INLPSTDKYGTQ-RVITFIRQMVEKGGFWRTSDHTWIKLDKIQF--VGA-CNPPTDAGRVQLTHRFLRHAPILLVDFPST 1458 (3245)
T ss_dssp             TTCCCCCTTSCC-HHHHHHHHHHHHSEEEETTTTEEEEESSEEE--EEE-ECCTTSTTCCCCCHHHHTTCCEEECCCCCH
T ss_pred             cCCCCccccccc-cHHHHHHHHHHcCCeEECCCCeEEEecCeEE--EEE-cCCCCCCCCccCCHHHHhhceEEEeCCCCH
Confidence            72111    110 001          011110011112223333  455 4666     458999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy14616        151 EEIQAILKIRL  161 (174)
Q Consensus       151 ~e~~~il~~~l  161 (174)
                      +++..|....+
T Consensus      1459 esL~~If~til 1469 (3245)
T 3vkg_A         1459 SSLTQIYGTFN 1469 (3245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999976543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.45  E-value=1.9e-07  Score=77.24  Aligned_cols=45  Identities=31%  Similarity=0.558  Sum_probs=36.5

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++||+.+++.+....   +.|    ++++|+||||||||++|+++|..+.+.
T Consensus        43 i~G~~~~l~~l~~~i---~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           43 VIGQEHAVEVIKTAA---NQK----RHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             CCSCHHHHHHHHHHH---HTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             EECchhhHhhccccc---cCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            689999985555444   443    599999999999999999999988654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.45  E-value=4.3e-07  Score=69.12  Aligned_cols=41  Identities=22%  Similarity=0.393  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhcCc-CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         10 AAGVVLGMIKEGKI-AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        10 ~l~~~~~~~~~g~~-~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.+++++... ++.+++|+||||||||++|.++|+.+.
T Consensus       136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34455556665221 247999999999999999999998775

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.38  E-value=1.8e-07  Score=72.01  Aligned_cols=133  Identities=13%  Similarity=0.058  Sum_probs=74.8

Q ss_pred             HHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-C-C--eeeecccccchhhhhhhhhhhh---hcc-CcE-EEE
Q psy14616         15 LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-T-P--FTSMAGSEIYSLEMNKTEEETE---MIE-GEV-VEI   85 (174)
Q Consensus        15 ~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~---~~~-~~i-~~~   85 (174)
                      .+.++ ++.+ +.+||+||+|+||++.+..+++.+.+. . +  .+.++.    ..+...+.+.+.   .+. .++ +++
T Consensus        10 ~~~l~-~~~~-~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~plf~~~kvvii~   83 (343)
T 1jr3_D           10 RAQLN-EGLR-AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP----NTDWNAIFSLCQAMSLFASRQTLLLL   83 (343)
T ss_dssp             HHHHH-HCCC-SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT----TCCHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred             HHHHh-cCCC-cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC----CCCHHHHHHHhcCcCCccCCeEEEEE
Confidence            34455 4443 799999999999999999999877321 1 1  122221    123333333332   222 233 333


Q ss_pred             EEec-cCCCCCCccceeEEEeccchhhh-ccc-cccchhhhcccCC----CCCCCHHhhcceeeEecCCCCHHHHHHHHH
Q psy14616         86 QIER-PATGLGSKVGKLTMKTTEMETSY-DLG-AKMIEAIGTAYSS----PHGIPIDLLDRMVIIPTQPYQDEEIQAILK  158 (174)
Q Consensus        86 ~id~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~~~~~~----~~~l~~~l~sR~~~i~~~~~~~~e~~~il~  158 (174)
                      +.|. + +.   ..++..      .... +.+ ++++ .++++...    ...+.+++.+||+++.|.+++.+++.++++
T Consensus        84 ~~~~kl-~~---~~~~aL------l~~le~p~~~~~~-il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~  152 (343)
T 1jr3_D           84 LPENGP-NA---AINEQL------LTLTGLLHDDLLL-IVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA  152 (343)
T ss_dssp             CCSSCC-CT---THHHHH------HHHHTTCBTTEEE-EEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred             CCCCCC-Ch---HHHHHH------HHHHhcCCCCeEE-EEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence            4444 3 22   111111      1111 122 2333 13333212    245789999999999999999999999999


Q ss_pred             HHhchh
Q psy14616        159 IRLVKN  164 (174)
Q Consensus       159 ~~l~~~  164 (174)
                      ..+.++
T Consensus       153 ~~~~~~  158 (343)
T 1jr3_D          153 ARAKQL  158 (343)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            876443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.28  E-value=8.8e-07  Score=69.30  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=36.9

Q ss_pred             CCchHHHHHHHHHHH-HHHHhc--CcCCceEEE--EcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGVVL-GMIKEG--KIAGRAILL--AGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~-~~~~~g--~~~~~~~ll--~GppG~GKT~la~~la~~l~   50 (174)
                      ++|.+...+.+..+. .....+  . .+.++++  +||||+|||++++.+++.+.
T Consensus        24 l~gR~~el~~l~~~l~~~~~~~~~~-~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           24 LRVRRGEAEALARIYLNRLLSGAGL-SDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHTSSCB-CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhHHHhcCCCC-CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            578887776666655 444444  2 2368899  99999999999999998773

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=98.27  E-value=4.1e-06  Score=65.61  Aligned_cols=133  Identities=16%  Similarity=0.238  Sum_probs=74.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhh---------hh----hhh---hhc-cCcEEEEE
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNK---------TE----EET---EMI-EGEVVEIQ   86 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~---------~~----~~~---~~~-~~~i~~~~   86 (174)
                      ..+++++|++|||||++|+++.....+. .+|+.++++.+....+..         ..    ...   +.. .|-++++|
T Consensus       160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlflde  239 (387)
T 1ny5_A          160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDE  239 (387)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred             CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence            3578999999999999999999877543 578888887653311100         00    000   111 34566667


Q ss_pred             EeccCCCCCCccceeEEE--ec-c---chhhhccccccchhhhcccCCC-------CCCCHHhhcce--eeEecCCCC--
Q psy14616         87 IERPATGLGSKVGKLTMK--TT-E---METSYDLGAKMIEAIGTAYSSP-------HGIPIDLLDRM--VIIPTQPYQ--  149 (174)
Q Consensus        87 id~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~l~sR~--~~i~~~~~~--  149 (174)
                      |+.+ +.   +.|...+.  .. .   ....... ..-++.|+++ |..       ..+.+.|..|+  ..+.+|++.  
T Consensus       240 i~~l-~~---~~q~~Ll~~l~~~~~~~~g~~~~~-~~~~rii~at-~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR  313 (387)
T 1ny5_A          240 IGEL-SL---EAQAKLLRVIESGKFYRLGGRKEI-EVNVRILAAT-NRNIKELVKEGKFREDLYYRLGVIEIEIPPLRER  313 (387)
T ss_dssp             GGGC-CH---HHHHHHHHHHHHSEECCBTCCSBE-ECCCEEEEEE-SSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGC
T ss_pred             hhhC-CH---HHHHHHHHHHhcCcEEeCCCCcee-eccEEEEEeC-CCCHHHHHHcCCccHHHHHhhcCCeecCCcchhc
Confidence            7776 22   12211000  00 0   0000000 1112225566 432       45788899999  567888887  


Q ss_pred             HHHHHHHHHHHhch
Q psy14616        150 DEEIQAILKIRLVK  163 (174)
Q Consensus       150 ~~e~~~il~~~l~~  163 (174)
                      .+++..+++..+.+
T Consensus       314 ~~Di~~l~~~~l~~  327 (387)
T 1ny5_A          314 KEDIIPLANHFLKK  327 (387)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHH
Confidence            48888888776643

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.25  E-value=1.1e-06  Score=61.10  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|+||+||||+++.|++.++.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~   29 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            57899999999999999999999974

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.25  E-value=9e-07  Score=61.91  Aligned_cols=28  Identities=32%  Similarity=0.315  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..++|.||||+||||+++.||+.+|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~   32 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI   32 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3589999999999999999999999843

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.17  E-value=5.2e-06  Score=62.48  Aligned_cols=46  Identities=30%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHhcCc---CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          5 LQARRAAGVVLGMIKEGKI---AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         5 ~~~~~~l~~~~~~~~~g~~---~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.+.......-.+..   .+..++|.||||+||||+++.+++.++
T Consensus        10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3444444444444333332   246788999999999999999999884

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=1.6e-06  Score=61.52  Aligned_cols=29  Identities=34%  Similarity=0.453  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++..++|.||||+||||+++.||+.+|..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~   52 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVP   52 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999843

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.16  E-value=1.6e-06  Score=62.74  Aligned_cols=39  Identities=26%  Similarity=0.537  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE   67 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~   67 (174)
                      ++.++|.||||+||+|.|+.||+.+|    +..++.++++...
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~~g----~~hIstGdllR~~   67 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQKFH----FNHLSSGDLLRAE   67 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHC----CEEECHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC----CceEcHHHHHHHH
Confidence            46788899999999999999999998    4566766666543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.12  E-value=1.8e-06  Score=61.91  Aligned_cols=37  Identities=30%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE   67 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~   67 (174)
                      .++|.||||+||+|.|+.||+.+|    +..++.++++...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g----~~~istGdllR~~   38 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG----FVHISTGDILREA   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC----CEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC----CeEEcHHHHHHHH
Confidence            478999999999999999999998    4566767766533

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.11  E-value=5.6e-06  Score=61.04  Aligned_cols=47  Identities=32%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhcCcC---CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          5 LQARRAAGVVLGMIKEGKIA---GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         5 ~~~~~~l~~~~~~~~~g~~~---~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++....+..+...+..+..+   +..++|.||||+||||+++.+++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~   58 (253)
T 2p5t_B            9 SEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQG   58 (253)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            34444444444444433222   457889999999999999999999873

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.10  E-value=5.3e-06  Score=60.88  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=24.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.||||+||||+|+.|++.+|
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            446899999999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.10  E-value=2.5e-06  Score=59.87  Aligned_cols=27  Identities=37%  Similarity=0.594  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.|++.++.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~~   31 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLRL   31 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            467889999999999999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.09  E-value=2.6e-06  Score=58.66  Aligned_cols=28  Identities=32%  Similarity=0.466  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++++|.|+||+||||+++.||+.+|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~   34 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLE   34 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999843

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.09  E-value=2.4e-06  Score=58.83  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||+++.|++.++.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~   27 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKY   27 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6889999999999999999999983

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.08  E-value=2.5e-06  Score=58.94  Aligned_cols=26  Identities=46%  Similarity=0.645  Sum_probs=23.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+.|.||||+||||+++.+|..++.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57899999999999999999999873

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.08  E-value=2.4e-06  Score=59.49  Aligned_cols=27  Identities=44%  Similarity=0.620  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~~   37 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSGL   37 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            357999999999999999999999973

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.08  E-value=2.8e-06  Score=61.18  Aligned_cols=28  Identities=25%  Similarity=0.461  Sum_probs=25.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+..++|.|+||+||||+++.||+.++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   31 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGL   31 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence            4468999999999999999999999983

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.07  E-value=8.3e-06  Score=77.44  Aligned_cols=126  Identities=17%  Similarity=0.111  Sum_probs=69.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh-hhhhhhhhhhhccCc-EEEEEEeccCCCC-CC-c----
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL-EMNKTEEETEMIEGE-VVEIQIERPATGL-GS-K----   97 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-i~~~~id~~~~~~-~~-~----   97 (174)
                      .+..+.||+|||||++++.+|+.+|+.  .+.++|++-... .++....-.- ..|. ..++|++++-... .. .    
T Consensus       605 ~gg~~~GPaGtGKTet~k~La~~lgr~--~~vfnC~~~~d~~~~g~i~~G~~-~~GaW~cfDEfNrl~~~vLSvv~~qi~  681 (3245)
T 3vkg_A          605 MGGNPFGPAGTGKTETVKALGSQLGRF--VLVFCCDEGFDLQAMSRIFVGLC-QCGAWGCFDEFNRLEERILSAVSQQIQ  681 (3245)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHHHHHH-HHTCEEEEETTTSSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhCCe--EEEEeCCCCCCHHHHHHHHhhHh-hcCcEEEehhhhcCCHHHHHHHHHHHH
Confidence            355789999999999999999999955  566676543321 1221110000 0111 2444554441000 00 0    


Q ss_pred             ---------cceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhhcceeeEecCCCCHHHHHHHHHH
Q psy14616         98 ---------VGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLLDRMVIIPTQPYQDEEIQAILKI  159 (174)
Q Consensus        98 ---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~sR~~~i~~~~~~~~e~~~il~~  159 (174)
                               ...+.+..   .....+.+... .++| +|+.    ..+++.|.+||..+.+..|+.+.+.+|+..
T Consensus       682 ~I~~a~~~~~~~~~~~~---G~~i~l~~~~~-vfiT-mNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~  751 (3245)
T 3vkg_A          682 TIQVALKENSKEVELLG---GKNISLHQDMG-IFVT-MNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLY  751 (3245)
T ss_dssp             HHHHHHHHTCSEECCC------CEECCTTCE-EEEC-BCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCeEEecC---CCEEeecCCeE-EEEE-eCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHH
Confidence                     00011110   11222322222 1334 4643    579999999999999999999888888644

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.06  E-value=6.3e-06  Score=62.84  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++|.+...+.+..   .+..+    +.++++||+|+|||++++.+++.++
T Consensus        14 ~~gR~~el~~L~~---~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           14 IFDREEESRKLEE---SLENY----PLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             SCSCHHHHHHHHH---HHHHC----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             cCChHHHHHHHHH---HHhcC----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence            4787777755544   44443    5899999999999999999998874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.05  E-value=2.9e-06  Score=58.88  Aligned_cols=25  Identities=36%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||+++.||+.++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~   30 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL   30 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            6899999999999999999999983

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.04  E-value=2.7e-06  Score=59.58  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|.||||+||||+++.|++.++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999886

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.04  E-value=3.9e-06  Score=58.63  Aligned_cols=26  Identities=46%  Similarity=0.735  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|+||+||||+|+.||+.+|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~   28 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGV   28 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999999984

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.00  E-value=3.5e-06  Score=64.30  Aligned_cols=38  Identities=24%  Similarity=0.522  Sum_probs=30.0

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeee
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSM   58 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~   58 (174)
                      |..++..++++||||+|||++|.++|...|..+.|+..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            44455678999999999999999999876555556666

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.00  E-value=3.5e-06  Score=58.87  Aligned_cols=26  Identities=46%  Similarity=0.707  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|+||+||||+++.||+.+|.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~   30 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGF   30 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47889999999999999999999973

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.00  E-value=5.3e-06  Score=64.06  Aligned_cols=48  Identities=25%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             CchHHHHHHH-HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616          2 VGQLQARRAA-GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         2 iG~~~~~~~l-~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.+.+ ..+...++.|..  .+++|.||||+||||+++++|..++.
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~--~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYR--VCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSC--EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCe--eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4555555433 333334445544  37999999999999999999998863

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.00  E-value=3.7e-06  Score=58.28  Aligned_cols=25  Identities=36%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH-HhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ-ALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~-~l~   50 (174)
                      ..++|.||||+||||+|+.+++ .++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~   28 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPG   28 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence            4688999999999999999998 454

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.99  E-value=5.8e-06  Score=58.62  Aligned_cols=27  Identities=44%  Similarity=0.660  Sum_probs=24.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+|+.|++.++.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~~   46 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLGI   46 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            357889999999999999999999984

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.98  E-value=5e-06  Score=58.29  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+|+.|++.+|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~   29 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGY   29 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            357889999999999999999999973

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.98  E-value=6.9e-06  Score=60.64  Aligned_cols=25  Identities=36%  Similarity=0.452  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+++.||||+||||+|+.||+.++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~   27 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGW   27 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCC
Confidence            5789999999999999999999984

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.98  E-value=5.6e-06  Score=59.60  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.||+.++.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~   30 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHA   30 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            458999999999999999999999983

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.98  E-value=5.3e-06  Score=58.31  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.||+.++.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~   35 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGY   35 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            358999999999999999999999973

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.97  E-value=5.5e-06  Score=58.09  Aligned_cols=26  Identities=50%  Similarity=0.756  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH-hC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA-LG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~-l~   50 (174)
                      +..++|+|+||+||||+++.||+. +|
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l~g   36 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDG   36 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            458999999999999999999999 66

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.97  E-value=6e-06  Score=57.17  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.||||+||||+++.++..+|
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence            346788999999999999999999887

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.96  E-value=1.2e-05  Score=57.33  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.++++|+||+|||++|..++..
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999887544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.96  E-value=5.3e-06  Score=58.89  Aligned_cols=26  Identities=31%  Similarity=0.595  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|+||+||||+++.|++.+|.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~lg~   44 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEACGY   44 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57999999999999999999999973

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.96  E-value=5.7e-06  Score=58.27  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|+||+||||+++.|++.++
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999999998

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.96  E-value=5.3e-06  Score=59.81  Aligned_cols=27  Identities=15%  Similarity=0.271  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.||||+||||+++.||+.++.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            357999999999999999999999983

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.94  E-value=6.4e-06  Score=56.76  Aligned_cols=26  Identities=38%  Similarity=0.621  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|+||+||||+++.|++.+|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~   28 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGY   28 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999999983

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.94  E-value=6.1e-06  Score=59.72  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.||+.++.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~   33 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFEL   33 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            368999999999999999999999873

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.94  E-value=4.1e-06  Score=58.61  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++|.|+||+||||+++.|++.++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999885

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.94  E-value=4e-06  Score=58.34  Aligned_cols=28  Identities=32%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..++|.|+||+||||+++.|++.++..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~   32 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGS   32 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            3578999999999999999999999853

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.93  E-value=9.9e-06  Score=61.86  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=32.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++|.+...+.+..    +..     ..++++||+|+|||++++.+++.++..
T Consensus        15 ~~gR~~el~~L~~----l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~   57 (357)
T 2fna_A           15 FFDREKEIEKLKG----LRA-----PITLVLGLRRTGKSSIIKIGINELNLP   57 (357)
T ss_dssp             SCCCHHHHHHHHH----TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             hcChHHHHHHHHH----hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            4677766644443    232     489999999999999999999988643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.93  E-value=7.6e-06  Score=58.08  Aligned_cols=26  Identities=42%  Similarity=0.736  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+||||+++.++..+|
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            46889999999999999999999986

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.93  E-value=6.6e-06  Score=58.48  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|+||+||||+++.|++.++.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            57889999999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.93  E-value=7.6e-06  Score=57.17  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=24.2

Q ss_pred             cCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         23 IAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        23 ~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++..+.|.||+|+||||+++.++..+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3456889999999999999999998763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.92  E-value=7.1e-06  Score=57.40  Aligned_cols=25  Identities=24%  Similarity=0.636  Sum_probs=23.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|.|+||+||||+++.|++.++
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5788999999999999999999997

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.92  E-value=7.6e-06  Score=59.50  Aligned_cols=27  Identities=37%  Similarity=0.508  Sum_probs=24.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.||+.++.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~~   42 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFCV   42 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            358999999999999999999999983

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.91  E-value=6.9e-06  Score=58.86  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||+|+.|++.+|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~   26 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGI   26 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999873

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.90  E-value=8e-06  Score=58.14  Aligned_cols=27  Identities=15%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.||||+||||+++.|++.++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            456899999999999999999999884

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.90  E-value=7.8e-06  Score=58.52  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||+|+.|++.+|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~   26 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEI   26 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999973

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.89  E-value=8.1e-06  Score=56.04  Aligned_cols=24  Identities=42%  Similarity=0.721  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||+++.| +.+|.
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~   26 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGA   26 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCC
Confidence            6889999999999999999 88873

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.87  E-value=1.7e-05  Score=55.13  Aligned_cols=26  Identities=38%  Similarity=0.685  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+.|.|++|+||||+++.++..+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688899999999999999999988

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.86  E-value=1e-05  Score=57.44  Aligned_cols=27  Identities=37%  Similarity=0.565  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.|.||+|+||||+++.++..++
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356888999999999999999999883

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.86  E-value=1.1e-05  Score=59.08  Aligned_cols=28  Identities=29%  Similarity=0.515  Sum_probs=25.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..+.|.||||+||||+++.+++.+|..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            4689999999999999999999999743

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.86  E-value=1e-05  Score=57.39  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=23.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|.|+||+||||+++.|++.+|
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4788999999999999999999987

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.86  E-value=1.1e-05  Score=57.00  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=23.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.|++|+||||+++.|++.++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            5789999999999999999999984

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.85  E-value=1.1e-05  Score=55.27  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=23.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.|+||+||||+++.|++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~   26 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNI   26 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999999984

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.84  E-value=2.3e-05  Score=62.70  Aligned_cols=41  Identities=37%  Similarity=0.521  Sum_probs=30.6

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +|.++.   ..+...++++.   .++++.|+||||||+++..+++.+
T Consensus        29 ~Q~~av---~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           29 GQKNAF---NIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             HHHHHH---HHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHH---HHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            355555   44455555543   389999999999999999999877

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.83  E-value=9.2e-06  Score=57.83  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|+||+||||+++.|++.++.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999998753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.83  E-value=1.2e-05  Score=56.37  Aligned_cols=27  Identities=48%  Similarity=0.852  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.|.||||+||||+++.++..++
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~   34 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPG   34 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccC
Confidence            346888999999999999999998754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.81  E-value=1.3e-05  Score=57.40  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||||+||||+++.|++.+|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~   26 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI   26 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999973

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.81  E-value=1.5e-05  Score=57.41  Aligned_cols=25  Identities=32%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.|.||+|+||||+++.+++.+|
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4788999999999999999999987

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.80  E-value=2e-05  Score=56.28  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.+.....++..+.+.||+|+||||+++.++..+.
T Consensus         9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A            9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            344444433223456788999999999999999998874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.79  E-value=1.2e-05  Score=57.23  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=23.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|+||+||||+++.|++.++
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.78  E-value=2e-05  Score=60.24  Aligned_cols=25  Identities=52%  Similarity=0.700  Sum_probs=23.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++++||+|+|||++++.||+.++
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4788999999999999999999997

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.78  E-value=1.7e-05  Score=57.33  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++|.||||+||||+++.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999997

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.77  E-value=1.6e-05  Score=56.82  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..++|.||+|+||||+++.|+..+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            356889999999999999999998874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.76  E-value=4.7e-05  Score=59.43  Aligned_cols=31  Identities=29%  Similarity=0.331  Sum_probs=26.5

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++..++++||||+||||+++.++..++.
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g  195 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGG  195 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4445678999999999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.75  E-value=2.1e-05  Score=57.36  Aligned_cols=25  Identities=44%  Similarity=0.793  Sum_probs=23.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.||||+||||+++.+|+.+|
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4788999999999999999999998

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.74  E-value=2.1e-05  Score=55.01  Aligned_cols=26  Identities=50%  Similarity=0.754  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|+||+||||+++.++..++
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999884

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.73  E-value=2e-05  Score=55.73  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.|++|+||||+++.|++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999998

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.73  E-value=2.1e-05  Score=58.20  Aligned_cols=24  Identities=42%  Similarity=0.720  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++|.|+||+||||+|+.+++.+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999984

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.72  E-value=2.4e-05  Score=55.86  Aligned_cols=31  Identities=26%  Similarity=0.312  Sum_probs=25.7

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .|..++..++++||||+|||++++.+|..-+
T Consensus        15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             SSBCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4556677899999999999999999998333

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.72  E-value=2e-05  Score=57.19  Aligned_cols=30  Identities=33%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..|..++..++|+||||+|||++++.++..
T Consensus        18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           18 QGGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            455666778999999999999999999985

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.72  E-value=2.6e-05  Score=57.45  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.||+|+||||+++.||+.||.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~   53 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNW   53 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            357889999999999999999999983

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.71  E-value=2.6e-05  Score=54.52  Aligned_cols=24  Identities=38%  Similarity=0.836  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+.|.||+|+||||+++.++..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.70  E-value=2.3e-05  Score=55.23  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.++|+||+|+||||+++.|.+...
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999988763

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.70  E-value=2.6e-05  Score=57.53  Aligned_cols=27  Identities=41%  Similarity=0.694  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.|.||+|+||||+++.+|..+|.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            468999999999999999999999984

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.69  E-value=4.9e-05  Score=62.36  Aligned_cols=44  Identities=20%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +||.+...+.+....   .......+.++++||+|+|||++|..+++
T Consensus       126 ~vGR~~~l~~L~~~L---~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          126 FVTRKKLVNAIQQKL---SKLKGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CCCCHHHHHHHHHHH---TTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ecccHHHHHHHHHHH---hcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            578877775554443   33222346888999999999999999874

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.69  E-value=2e-05  Score=56.66  Aligned_cols=29  Identities=38%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..+++.||||+|||++++.++..+
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45556788999999999999999999654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.68  E-value=3e-05  Score=54.20  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++|.|+||+||||+++.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999988

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.68  E-value=3.1e-05  Score=56.19  Aligned_cols=31  Identities=32%  Similarity=0.438  Sum_probs=25.7

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..|..++..++++||||+|||+++..+|..+
T Consensus        17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566667789999999999999999887654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.68  E-value=2.6e-05  Score=55.22  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+++.++..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4678899999999999999999877

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.66  E-value=2.5e-05  Score=54.69  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|.||+|+||||+++.++..++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~   27 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccC
Confidence            3678999999999999999998654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.65  E-value=3.7e-05  Score=54.35  Aligned_cols=25  Identities=28%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+++.++..+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4578899999999999999999875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.65  E-value=2.6e-05  Score=59.83  Aligned_cols=26  Identities=31%  Similarity=0.586  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.||+|+|||+++..||+.++.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~   66 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPL   66 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence            47889999999999999999999973

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.64  E-value=3e-05  Score=55.70  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=25.9

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..|..++..+.|.||+|+||||+++.++..+
T Consensus        19 ~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           19 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455566788899999999999999999754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.61  E-value=4.7e-05  Score=57.77  Aligned_cols=26  Identities=42%  Similarity=0.634  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+++.||+|+|||++|..+|+.++
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            35788999999999999999999987

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.60  E-value=4.5e-05  Score=54.22  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++.++|.||+|+||||+++.|++...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            357889999999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.60  E-value=4.3e-05  Score=54.60  Aligned_cols=26  Identities=35%  Similarity=0.564  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|+||+||||+++.+++.++
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46888999999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.60  E-value=4.6e-05  Score=56.00  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+.+.|++|+||||+|+.|++.+|.
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~lg~   48 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLLGQ   48 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            57889999999999999999999884

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.59  E-value=4.3e-05  Score=54.10  Aligned_cols=23  Identities=39%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+.+.|++|+||||+++.++. +|
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g   25 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LG   25 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CC
Confidence            578999999999999999999 76

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.59  E-value=4.5e-05  Score=54.10  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.+.|.||+|+||||+++.++..+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4688999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.56  E-value=0.00014  Score=54.74  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+..+.+.||+|+||||+++.++..++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345677999999999999999999885

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.55  E-value=5.7e-05  Score=53.45  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=23.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.+.|++|+||||+++.+|+.+|.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~   28 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGV   28 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            6789999999999999999999983

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.55  E-value=6.3e-05  Score=57.19  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++.||+|+|||+++..+|+.++
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            4678999999999999999999986

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.54  E-value=5.8e-05  Score=54.81  Aligned_cols=30  Identities=37%  Similarity=0.537  Sum_probs=24.9

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..|..++..++++|+||+|||++|..+|..
T Consensus        24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TTSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            346666788999999999999999988754

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.53  E-value=0.00017  Score=51.12  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             HHHHHHHHhcC-cCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         12 GVVLGMIKEGK-IAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        12 ~~~~~~~~~g~-~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.+.+.... .++..+.+.||+|+||||+++.++..+
T Consensus         8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34444444322 234577799999999999999999876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.53  E-value=9.2e-05  Score=56.34  Aligned_cols=30  Identities=33%  Similarity=0.472  Sum_probs=26.2

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+++.|+||+|||+++..+|...
T Consensus        63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            566677899999999999999999999765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.52  E-value=5.6e-05  Score=53.61  Aligned_cols=24  Identities=42%  Similarity=0.537  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.|.||+|+||||+++.++. +|.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~   27 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGV   27 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCC
Confidence            577999999999999999987 663

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.51  E-value=6.1e-05  Score=56.61  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++|.|+||+||||+++.+++.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            468899999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.49  E-value=0.00012  Score=55.04  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+..++..+++.||||+||||+++.+|..+
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            455567789999999999999999999766

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.49  E-value=5e-05  Score=53.99  Aligned_cols=26  Identities=35%  Similarity=0.583  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.||+|+|||++|..+++..+
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            46899999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.48  E-value=7.1e-05  Score=59.15  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++++|+||+||||+|+.+++.++
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~  283 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAG  283 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45788999999999999999999886

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.48  E-value=8.4e-05  Score=53.99  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.||||+||||+++.+++.++.
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            457889999999999999999999863

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.47  E-value=8.3e-05  Score=57.58  Aligned_cols=29  Identities=31%  Similarity=0.454  Sum_probs=24.7

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..++++||||+|||+++..++..+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44556788899999999999999999765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.47  E-value=0.0001  Score=53.57  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+..+.|.|++|+||||+++.+|..+|
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            346788999999999999999999998

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.46  E-value=0.0001  Score=51.95  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.|++|+||||+++.|++. |
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-g   32 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-G   32 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-T
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-C
Confidence            57889999999999999999997 6

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.46  E-value=8.2e-05  Score=55.45  Aligned_cols=29  Identities=31%  Similarity=0.479  Sum_probs=24.1

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..++++||||+||||+++.++..+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            33446789999999999999999998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.45  E-value=0.00011  Score=52.10  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+++.++..+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4577899999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.44  E-value=8.7e-05  Score=52.78  Aligned_cols=26  Identities=42%  Similarity=0.571  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999999876

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.44  E-value=8.6e-05  Score=56.69  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..++++||||+|||+++..+|...
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            455556789999999999999999999864

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=97.43  E-value=9.1e-05  Score=61.68  Aligned_cols=21  Identities=33%  Similarity=0.659  Sum_probs=16.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      ...|+.||||||||+++-.+.
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~I  226 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEII  226 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHH
Confidence            378899999999997544443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.43  E-value=8.1e-05  Score=57.52  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=24.5

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..++++||||+|||+++..++..+
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45556789999999999999999998654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.43  E-value=8.5e-05  Score=57.54  Aligned_cols=29  Identities=28%  Similarity=0.467  Sum_probs=24.6

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..++++||||+|||++|..+|..+
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45556789999999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.42  E-value=0.00012  Score=50.23  Aligned_cols=26  Identities=31%  Similarity=0.578  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+.|.||.|+||||+.+.++..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45678899999999999999999988

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.42  E-value=0.00012  Score=52.93  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+||||+.+.++..+.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            56888999999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.41  E-value=0.00011  Score=51.91  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.|+|++|+||||+++.+++.+|.
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~   38 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGA   38 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4558999999999999999999873

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.41  E-value=0.00011  Score=52.46  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.|++|+||||+++.+++.+|
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4788999999999999999999998

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.41  E-value=0.00011  Score=52.94  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+++.++..+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            5678899999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.41  E-value=4e-05  Score=54.56  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++|.|++|+||||+++.|++.++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999884

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.41  E-value=0.00011  Score=52.61  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.|.|++|+||||+++.|+. +|
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~-lg   28 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-LG   28 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cC
Confidence            4788999999999999999998 76

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=0.00012  Score=52.03  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+||||+++.++..+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46788999999999999999998773

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.39  E-value=0.00012  Score=57.57  Aligned_cols=26  Identities=35%  Similarity=0.681  Sum_probs=23.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+++.||+|+|||+++..||+.++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC
Confidence            46789999999999999999999873

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.39  E-value=0.00011  Score=56.41  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++.||+|+|||++|..||+.++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3688999999999999999999997

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.38  E-value=0.00012  Score=56.29  Aligned_cols=29  Identities=24%  Similarity=0.157  Sum_probs=24.6

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .|..++..++++||||+|||+++..+|..
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35555678889999999999999999986

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.38  E-value=0.00019  Score=54.33  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.+|..+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            46888999999999999999998773

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.37  E-value=0.00011  Score=50.78  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGL   45 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~l   45 (174)
                      +..+.|.||+|+||||+++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            457889999999999999963

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.36  E-value=0.00027  Score=57.66  Aligned_cols=43  Identities=21%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CchHHHHHHHHHHHHHHHhc-CcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          2 VGQLQARRAAGVVLGMIKEG-KIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~~g-~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +|.+..++.+..+.   ..+ ......+.++|++|+|||++|+.+++
T Consensus       131 ~GR~~~~~~l~~~L---~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKL---DEMCDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHH---HHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHH---hcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            58777775555544   222 22236788999999999999999997

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.36  E-value=0.00011  Score=55.91  Aligned_cols=28  Identities=29%  Similarity=0.262  Sum_probs=24.0

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      |..++..++++||||+|||+++..+|..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4445678899999999999999999975

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.36  E-value=0.00018  Score=57.20  Aligned_cols=30  Identities=33%  Similarity=0.422  Sum_probs=26.2

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+++.|+||+|||+++..+|...
T Consensus       195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          195 GTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567777889999999999999999998754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.36  E-value=0.00013  Score=52.81  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++++.|+|||||||++..+|..+
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH
Confidence            479999999999999999999876

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.35  E-value=0.00015  Score=51.18  Aligned_cols=24  Identities=38%  Similarity=0.728  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.+.||+|+||||+.+.++..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            467899999999999999999876

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.35  E-value=0.00012  Score=67.45  Aligned_cols=29  Identities=28%  Similarity=0.467  Sum_probs=25.0

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++.+++|+||||||||++|.+++.+.
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34457899999999999999999998765

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.34  E-value=0.00019  Score=51.09  Aligned_cols=27  Identities=22%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ..+.+.||+|+|||++++.||+.||..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~   33 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIP   33 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            368899999999999999999999943

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.34  E-value=0.00023  Score=54.67  Aligned_cols=30  Identities=23%  Similarity=0.506  Sum_probs=25.8

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+++.|+||+|||+++..+|..+
T Consensus        41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             CSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            366667889999999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.32  E-value=0.00024  Score=56.71  Aligned_cols=30  Identities=37%  Similarity=0.574  Sum_probs=25.6

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+++.|+||+|||+++..+|..+
T Consensus       198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            456667789999999999999999998755

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.32  E-value=0.00011  Score=53.34  Aligned_cols=35  Identities=23%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .+-|.||||+||||.|+.|++.++..    .++.++++.
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~----~is~gdllR   44 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIP----QISTGDMLR   44 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCC----EECHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCC----eeechHHHH
Confidence            34589999999999999999999833    445444443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.31  E-value=0.00045  Score=49.22  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++.|++|+||||++..++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4899999999999999999998864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.31  E-value=0.00022  Score=55.07  Aligned_cols=30  Identities=30%  Similarity=0.321  Sum_probs=25.1

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+.++||||+|||++++.++...
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344456788899999999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.29  E-value=0.00019  Score=53.25  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+++.||+|+||||+.+.++..+
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            45688899999999999999999876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.28  E-value=0.00014  Score=57.14  Aligned_cols=29  Identities=31%  Similarity=0.339  Sum_probs=24.0

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .|..++..++|+||||+|||+|++.++..
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            45555778999999999999999987743

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.27  E-value=0.00011  Score=53.21  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=16.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH-HHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLA-QAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la-~~l   49 (174)
                      +..+.|.||+|+||||+++.++ ..+
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4678899999999999999999 765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.27  E-value=0.00018  Score=53.80  Aligned_cols=24  Identities=38%  Similarity=0.616  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.|.|++|+||||+|+.|+ .+|
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~lg   99 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NLG   99 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCC
Confidence            468899999999999999999 566

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.27  E-value=0.0011  Score=47.26  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++.|++|+|||+++..++..+.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            5888999999999999999998763

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.26  E-value=0.00017  Score=56.10  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=24.4

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..++++||||+|||++|..+|..+
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            44456789999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.26  E-value=0.00021  Score=52.17  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+-+.||+|+||||+++.++..+|
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34677999999999999999999886

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00037  Score=48.45  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ...+++.|++|+|||++...+...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999999864

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.25  E-value=0.00023  Score=57.64  Aligned_cols=26  Identities=12%  Similarity=0.208  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|.+|+||||+|++||+.|+.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHH
Confidence            58889999999999999999999985

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.25  E-value=0.00023  Score=49.91  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +...+++||+|+||||++..+++.+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999997777654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.24  E-value=0.00021  Score=53.92  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++..+|..+
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5688899999999999999999766

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.24  E-value=0.0008  Score=51.33  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+-+.||+|+||||+++.++..+.
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567899999999999999999885

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.24  E-value=0.00021  Score=58.81  Aligned_cols=24  Identities=38%  Similarity=0.681  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+++.||||||||+++.+++..+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999998765

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.24  E-value=0.00032  Score=55.87  Aligned_cols=30  Identities=33%  Similarity=0.472  Sum_probs=26.1

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++..+++.|+||+|||+++..+|...
T Consensus       192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          192 YGYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            467777899999999999999999998765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.24  E-value=0.00043  Score=54.96  Aligned_cols=25  Identities=40%  Similarity=0.412  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.||+|+||||++..+|..+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999999776

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.23  E-value=0.00023  Score=53.99  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.||+|+||||++..+|..+
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHH
Confidence            4578899999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.23  E-value=0.00042  Score=52.52  Aligned_cols=29  Identities=28%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...++..+.|.||+|+||||+++.|+..+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            33456788999999999999999999887

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.20  E-value=0.0002  Score=65.20  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++.+++|||||||||++|++++.+-
T Consensus      1081 ~g~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A         1081 MGRIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCChHHHHHHHHHHh
Confidence            34569999999999999999999754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.20  E-value=0.00031  Score=53.48  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|..++ .++++||||+|||+++..++...
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            455554 67899999999999988887554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.20  E-value=0.00026  Score=53.57  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+++.+|..+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999876

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.20  E-value=0.00055  Score=55.51  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.++++.||+|+||||+.++++..+...
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            4579999999999999999999887543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.19  E-value=0.00032  Score=48.78  Aligned_cols=24  Identities=38%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.+.||+|+||||+++.++..+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            578899999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.19  E-value=0.00025  Score=51.63  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++.|++|+||||+++.|++.+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            5788999999999999999999984

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.18  E-value=0.00032  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.+.|++|+||||++..++..+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh
Confidence            478899999999999999999877

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.18  E-value=0.00026  Score=49.17  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.+++|.|++|+||||+|..+.+.
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            579999999999999999999874

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.16  E-value=0.00021  Score=58.11  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=23.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++|.|.||+||||+|+.||+.++.
T Consensus        36 ~lIvlvGlpGSGKSTia~~La~~L~~   61 (520)
T 2axn_A           36 TVIVMVGLPARGKTYISKKLTRYLNW   61 (520)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47889999999999999999999853

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.16  E-value=0.0003  Score=50.54  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|++|+||||+++.+++.+.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999884

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.16  E-value=0.00029  Score=53.94  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+.|.||+|+||||+++.+|..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999876

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.15  E-value=0.0009  Score=51.66  Aligned_cols=24  Identities=29%  Similarity=0.513  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.+.|+||+||||++..++..+
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.14  E-value=0.00047  Score=60.76  Aligned_cols=45  Identities=18%  Similarity=0.125  Sum_probs=32.4

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +||.+...+.|..++   ..+....+.+.++|+.|+|||+||+.+++.
T Consensus       126 ~vgR~~~~~~l~~~l---~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          126 FVTRKKLVHAIQQKL---WKLNGEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             CCCCHHHHHHHHHHH---HTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             eccHHHHHHHHHHHH---hhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            578887775555443   332223467889999999999999998864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.14  E-value=0.00037  Score=50.42  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+.+.|++|+|||++++.||+.+|..
T Consensus        16 iI~i~g~~gsGk~~i~~~la~~lg~~   41 (223)
T 3hdt_A           16 IITIEREYGSGGRIVGKKLAEELGIH   41 (223)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence            57789999999999999999999843

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.13  E-value=0.00037  Score=50.90  Aligned_cols=26  Identities=23%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.-++|.|++|+||||+++.+++.+.
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999873

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.12  E-value=0.00054  Score=56.76  Aligned_cols=25  Identities=40%  Similarity=0.720  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.|+||+||||+|+.|++.|
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999998

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.12  E-value=0.00027  Score=51.28  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=19.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.-++|.||+|+||||+++.+++.+
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999987

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.12  E-value=0.0004  Score=50.03  Aligned_cols=27  Identities=41%  Similarity=0.532  Sum_probs=24.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|++|+||||.++.+++.++.
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            467889999999999999999999975

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.11  E-value=0.00035  Score=53.10  Aligned_cols=27  Identities=30%  Similarity=0.241  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.+.||+|+||||+++.|+..+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            345777999999999999999998773

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.11  E-value=0.00039  Score=53.89  Aligned_cols=29  Identities=38%  Similarity=0.593  Sum_probs=24.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++..+++.||+|+||||++++++..+...
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~  202 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFD  202 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            35689999999999999999999877543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.08  E-value=0.00047  Score=47.75  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ...+++||+|+|||+++++++..++.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            46779999999999999999998863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.08  E-value=0.00037  Score=54.28  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+++.||+|+||||+.++++..+.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            456889999999999999999998763

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.07  E-value=0.00039  Score=53.87  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+++.+|..+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhc
Confidence            4578899999999999999999876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.07  E-value=0.00039  Score=55.27  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.|++|+||||++..||..+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHH
Confidence            4688899999999999999999877

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.05  E-value=0.00033  Score=50.63  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++-.+.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45788999999999999999986553

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.00044  Score=53.56  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+++.||+|+||||+.++++..+.
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccc
Confidence            34788999999999999999998763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.02  E-value=0.00036  Score=50.85  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++..+.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            56788999999999999999997653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.02  E-value=0.001  Score=50.94  Aligned_cols=28  Identities=21%  Similarity=0.551  Sum_probs=24.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..+++.||+|+||||+.++++..+...
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~  198 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE  198 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence            4589999999999999999999887543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.02  E-value=0.0004  Score=56.78  Aligned_cols=26  Identities=35%  Similarity=0.594  Sum_probs=23.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.|++|+||||++++||..++
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhc
Confidence            46788999999999999999999985

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.01  E-value=0.00045  Score=55.67  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+++.||..+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHh
Confidence            4578899999999999999999876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.00  E-value=0.00016  Score=53.33  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|++|+||||+++.|++.+.
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45788999999999999999999983

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.99  E-value=0.00053  Score=55.34  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=26.8

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .|..++..+++.|+||+|||+++..+|..+.
T Consensus       237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a  267 (503)
T 1q57_A          237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWG  267 (503)
T ss_dssp             CCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             cccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence            4666778899999999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.98  E-value=0.00043  Score=50.50  Aligned_cols=25  Identities=28%  Similarity=0.543  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            5678899999999999999998654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.98  E-value=0.00037  Score=49.89  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..+.+.||+|+|||||.+.++..
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999999865

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.98  E-value=0.00061  Score=48.94  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.-++|.|++|+||||.++.+++.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999988

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.97  E-value=0.00057  Score=49.44  Aligned_cols=27  Identities=33%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            467889999999999999999998753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.97  E-value=0.00019  Score=53.97  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.||+|+||||+++.|++.++
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3677999999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.97  E-value=0.00057  Score=52.14  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.||+|+||||++..+|..+
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.97  E-value=0.00057  Score=51.74  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+||||+++.++..++
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45677999999999999999999875

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.96  E-value=0.00054  Score=56.86  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...++.||||||||+++..++..+
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999877766554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.94  E-value=0.00039  Score=55.18  Aligned_cols=24  Identities=46%  Similarity=0.646  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+++.|+||+||||++..+|..+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            588999999999999999999876

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.94  E-value=0.00056  Score=54.80  Aligned_cols=25  Identities=36%  Similarity=0.550  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|.|.||+||||+++.+++.++
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4788999999999999999999875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.94  E-value=0.00046  Score=49.64  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++-.+.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            56788999999999999999987653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.94  E-value=0.00048  Score=51.03  Aligned_cols=26  Identities=23%  Similarity=0.366  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+|||||.+.++..+.
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            55788999999999999999997653

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.93  E-value=0.00067  Score=49.07  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.-++++||+|+||||++..++..+
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4578889999999999999888766

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.93  E-value=0.00054  Score=56.70  Aligned_cols=25  Identities=44%  Similarity=0.650  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.+++.||||||||+++..+...+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999988777655

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.92  E-value=0.00061  Score=50.08  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..+.+.||+|+||||+.+.++..
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            567889999999999999999964

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.92  E-value=0.00057  Score=52.92  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            4578899999999999999999765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.91  E-value=0.00065  Score=50.44  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..+.+.||+|+|||||.+.++-.
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            567889999999999999999965

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.90  E-value=0.00053  Score=50.60  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++..+.
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45788999999999999999987653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.89  E-value=0.00069  Score=52.46  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=24.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.||+|+|||||++.|+..+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            467889999999999999999998753

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.89  E-value=0.0008  Score=53.19  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++..+++.||+|+||||+.++++..+..
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            4457889999999999999999998854

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.89  E-value=0.00057  Score=49.57  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5678899999999999999999765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.88  E-value=0.00053  Score=50.19  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            5678899999999999999999765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.88  E-value=0.00064  Score=47.50  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+++.||+|+||||+.+.++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            67899999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.88  E-value=0.00057  Score=49.94  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++-.+.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            55788999999999999999997653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.87  E-value=0.00058  Score=51.00  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            5678899999999999999998765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.87  E-value=0.00057  Score=50.15  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++..+.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            56788999999999999999987653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.86  E-value=0.0006  Score=50.58  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+|||||.+.++..+.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            45788999999999999999997653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.86  E-value=0.00041  Score=48.12  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+.+.||+|+||||+++.++..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3678999999999999999998873

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.86  E-value=0.00073  Score=47.41  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.||+|+||||+.+.++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6889999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.86  E-value=0.00062  Score=50.09  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+|||||.+.++-.+.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            56788999999999999999986653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.86  E-value=0.00063  Score=49.75  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.+.||+|+||||+.+.++-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.85  E-value=0.00057  Score=56.17  Aligned_cols=25  Identities=40%  Similarity=0.495  Sum_probs=23.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..++|.|+||+||||+|+.|++.|+
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhc
Confidence            4788999999999999999999986

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.84  E-value=0.00063  Score=50.51  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++..+.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            56788999999999999999997653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.84  E-value=0.00074  Score=52.24  Aligned_cols=25  Identities=36%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4578899999999999999999655

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.84  E-value=0.00076  Score=52.65  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCC
Confidence            4578899999999999999999765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.83  E-value=0.00064  Score=50.29  Aligned_cols=25  Identities=36%  Similarity=0.511  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            5678899999999999999998654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.83  E-value=0.00065  Score=50.81  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+|||||.+.++-.+.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            56788999999999999999997653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.83  E-value=0.00066  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+|||||.+.++-.+
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            5678899999999999999998655

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.00078  Score=52.26  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            4578899999999999999999655

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.83  E-value=0.00065  Score=50.57  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+|||||.+.++..+.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            56788999999999999999997653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.82  E-value=0.00078  Score=52.20  Aligned_cols=25  Identities=36%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCC
Confidence            4578899999999999999999655

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.82  E-value=0.0009  Score=47.49  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++|.|++|+|||+++..++...
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            589999999999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.82  E-value=0.00085  Score=44.92  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.|++|+|||+++..+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.80  E-value=0.00085  Score=52.23  Aligned_cols=25  Identities=32%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            4578899999999999999999655

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.80  E-value=0.0022  Score=47.45  Aligned_cols=41  Identities=22%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +...+..+.............+++.|++|+|||++...+..
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           21 TQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence            44444444443433222335899999999999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.79  E-value=0.00093  Score=54.27  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             HhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         19 KEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        19 ~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+..++..+++.||||+||||+++.++..+
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3355567788999999999999999999765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.79  E-value=0.00073  Score=50.14  Aligned_cols=25  Identities=32%  Similarity=0.624  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++-.+
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            5678899999999999999998655

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.79  E-value=0.0018  Score=56.77  Aligned_cols=42  Identities=29%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          2 VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         2 iG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ||.+...+.|...+   .... ..+.+.++||.|+|||++|+.+++
T Consensus       131 VGRe~eLeeL~elL---~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQAL---LELR-PAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHH---HHCC-SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH---hccC-CCeEEEEEcCCCccHHHHHHHHHH
Confidence            67777775555443   3311 236888999999999999999985

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.79  E-value=0.00064  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|+|||+|.+.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.78  E-value=0.00086  Score=52.20  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCC
Confidence            4578899999999999999999655

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.78  E-value=0.00074  Score=49.74  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5578899999999999999999765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.77  E-value=0.00092  Score=49.72  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.+.||+|+||||+.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999766

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.77  E-value=0.00092  Score=45.42  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++.+.++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3688999999999999999975

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.76  E-value=0.00062  Score=47.60  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++++|++|+|||++|+.++.. +.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~   24 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-AP   24 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CS
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CC
Confidence            689999999999999999977 53

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.76  E-value=0.00066  Score=52.37  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcCC
Confidence            4578899999999999999999655

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.76  E-value=0.0016  Score=49.14  Aligned_cols=25  Identities=44%  Similarity=0.456  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.|++|+||||++..+|..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577889999999999999999876

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.75  E-value=0.0013  Score=46.54  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.|-|+.|+||||.++.|++.|
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L   24 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYL   24 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999988

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.75  E-value=0.001  Score=44.78  Aligned_cols=23  Identities=13%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            47899999999999999999864

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=96.75  E-value=0.00096  Score=56.91  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...++.||||||||+++..++..+
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            478899999999998877766554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.74  E-value=0.00095  Score=53.98  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.|+||+||||++..||..+
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999776

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.73  E-value=0.0011  Score=44.40  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.|++|+|||+++..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.73  E-value=0.001  Score=45.14  Aligned_cols=22  Identities=41%  Similarity=0.655  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            3789999999999999998874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.72  E-value=0.0011  Score=44.38  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999988753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.71  E-value=0.0012  Score=49.64  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.|++|+||||++..+|..+
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4577789999999999999999876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.70  E-value=0.00089  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578899999999999999999765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.70  E-value=0.0011  Score=52.03  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.++..+
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            5678899999999999999999643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.67  E-value=0.0025  Score=45.38  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .-+.|-|+.|+||||.++.|++.|..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~   28 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVK   28 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHC
Confidence            35778999999999999999999843

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.67  E-value=0.0029  Score=46.54  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          8 RRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         8 ~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      .+.+..+.+.++........+++.|++|+|||++..++..
T Consensus        19 ~~~l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~   58 (262)
T 3def_A           19 QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG   58 (262)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3344444444444322335899999999999999999875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.67  E-value=0.0013  Score=44.33  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47899999999999999999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.67  E-value=0.0013  Score=44.16  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.67  E-value=0.0013  Score=44.31  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.65  E-value=0.0014  Score=44.70  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999999753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.65  E-value=0.0012  Score=45.50  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..++|.|++|+|||++...++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999985

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.65  E-value=0.0013  Score=52.19  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.|++|+||||++-.||..+
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688899999999999999999776

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.65  E-value=0.0014  Score=44.27  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47899999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.64  E-value=0.0013  Score=44.48  Aligned_cols=21  Identities=29%  Similarity=0.618  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|+|||++...+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999863

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.64  E-value=0.0021  Score=50.70  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+.|.||+|+||||+.++++...
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCC
Confidence            477899999999999999999644

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.64  E-value=0.0014  Score=44.28  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3789999999999999999885

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.63  E-value=0.0028  Score=48.60  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||||+||||+.+.++..+
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578899999999999999999765

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.63  E-value=0.0014  Score=60.62  Aligned_cols=29  Identities=28%  Similarity=0.467  Sum_probs=24.8

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++.+++++||||||||++|.+++.+.
T Consensus      1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea 1105 (2050)
T 3cmu_A         1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 1105 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44557899999999999999999998654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.62  E-value=0.0011  Score=49.87  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+.+.++..+
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            5678899999999999999998654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.61  E-value=0.0015  Score=44.57  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            48999999999999999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.61  E-value=0.0014  Score=44.97  Aligned_cols=24  Identities=33%  Similarity=0.673  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..++|.|+||+|||+|...++..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999854

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.61  E-value=0.00072  Score=52.28  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+||||+.+.+|-.+
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4578899999999999999999655

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.0014  Score=44.20  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3789999999999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.60  E-value=0.0013  Score=44.35  Aligned_cols=21  Identities=43%  Similarity=0.691  Sum_probs=18.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      -.+++.|++|+|||++...+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            368999999999999999885

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.60  E-value=0.0053  Score=47.27  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...+.|.|+||+||||+...++..+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.60  E-value=0.0026  Score=48.33  Aligned_cols=24  Identities=33%  Similarity=0.677  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.+++|.|++|+|||++|..+.+.
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            579999999999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.60  E-value=0.0013  Score=60.04  Aligned_cols=29  Identities=28%  Similarity=0.467  Sum_probs=25.3

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++..++++||||+|||++|..+|..+
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a  756 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence            45567899999999999999999998765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.60  E-value=0.0015  Score=43.81  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.|++|+|||++...+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.59  E-value=0.0016  Score=43.86  Aligned_cols=23  Identities=17%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999999863

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.58  E-value=0.0016  Score=43.74  Aligned_cols=23  Identities=26%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999999863

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.58  E-value=0.002  Score=52.60  Aligned_cols=26  Identities=42%  Similarity=0.547  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|.|++|+||||+|+.|++.++
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            35788999999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.57  E-value=0.0016  Score=44.89  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            48899999999999999999863

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.57  E-value=0.0013  Score=53.40  Aligned_cols=25  Identities=40%  Similarity=0.702  Sum_probs=21.2

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHH
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGL   45 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~l   45 (174)
                      +..++..+++.||+|+|||||++.+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            3345678999999999999999994

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.56  E-value=0.002  Score=43.48  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...+++||.|+|||++..++...+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999877

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.55  E-value=0.0017  Score=44.85  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999864

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.0016  Score=55.57  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=17.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.||||||||+++..++.
T Consensus       376 ~~~lI~GppGTGKT~~i~~~i~  397 (802)
T 2xzl_A          376 PLSLIQGPPGTGKTVTSATIVY  397 (802)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999987665543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.55  E-value=0.0018  Score=44.07  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ...+++.|++|+|||++...+..
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.54  E-value=0.0022  Score=50.80  Aligned_cols=25  Identities=36%  Similarity=0.412  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+++.||+|+||||++..+|..+
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578889999999999999999877

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.54  E-value=0.0017  Score=44.30  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            4789999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.52  E-value=0.0018  Score=44.77  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+++..++..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.52  E-value=0.0018  Score=44.05  Aligned_cols=23  Identities=17%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999999853

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.51  E-value=0.0019  Score=44.40  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999854

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.51  E-value=0.0019  Score=44.02  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            48899999999999999999865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.51  E-value=0.0019  Score=43.92  Aligned_cols=23  Identities=17%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            48999999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.50  E-value=0.0019  Score=43.60  Aligned_cols=22  Identities=41%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.50  E-value=0.0017  Score=44.30  Aligned_cols=22  Identities=27%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4889999999999999998863

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.50  E-value=0.0018  Score=47.34  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ..+++.|++|+||||++..+|..+.
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999998774

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.48  E-value=0.0019  Score=44.35  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.48  E-value=0.0019  Score=44.75  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+|...+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999998864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.48  E-value=0.0019  Score=50.03  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||+|+|||||.+.|+..+
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCEEEEECCCCccHHHHHHHHhccc
Confidence            4578899999999999999998554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.46  E-value=0.0011  Score=50.19  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..+.
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCCC
Confidence            56788999999999999999997663

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.46  E-value=0.0017  Score=44.73  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|+|||++...+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.46  E-value=0.0021  Score=43.86  Aligned_cols=23  Identities=22%  Similarity=0.576  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47899999999999999998864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.46  E-value=0.002  Score=44.84  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999999999986

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.46  E-value=0.0021  Score=44.03  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            48999999999999999999863

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.44  E-value=0.002  Score=44.19  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            48899999999999999999864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.44  E-value=0.0021  Score=49.89  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+|||||.++++..+
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            4578899999999999999999755

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.44  E-value=0.0022  Score=44.49  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+|...+...
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999999875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.43  E-value=0.0022  Score=43.70  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            47899999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0019  Score=51.63  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+.+.||+|+|||||++.++..+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            45688999999999999999999765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.42  E-value=0.0019  Score=44.84  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.42  E-value=0.0023  Score=43.84  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.41  E-value=0.0023  Score=44.28  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+|...+...
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999888764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.41  E-value=0.0046  Score=47.44  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.|+||+||||++..++..+
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.41  E-value=0.002  Score=47.70  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+.|.|+||+||||+...+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999974

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.40  E-value=0.0024  Score=44.28  Aligned_cols=23  Identities=22%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            37999999999999999988864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.40  E-value=0.0028  Score=48.81  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .+.-+.|.||+|+||||+.+.++..+..+
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            35688999999999999999999987543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.40  E-value=0.0031  Score=50.15  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++..+.+.||+|+||||+.+.++.....+
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            45688899999999999999999987543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.40  E-value=0.00082  Score=47.37  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +..+.|.|++|+||||+.+.++.
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45788999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.40  E-value=0.0022  Score=48.40  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+|||||.++++ .+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            4578899999999999999999 653

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.39  E-value=0.0048  Score=44.77  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..++++||+|+|||.++..++..++.
T Consensus       109 ~~~ll~~~tG~GKT~~a~~~~~~~~~  134 (237)
T 2fz4_A          109 KRGCIVLPTGSGKTHVAMAAINELST  134 (237)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            36999999999999999999888753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.39  E-value=0.0024  Score=44.16  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.39  E-value=0.0025  Score=43.58  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999998853

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.38  E-value=0.0013  Score=47.58  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..+.|.||.|+||||+++.++..
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            457789999999999999999987

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0025  Score=44.40  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999998864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.38  E-value=0.0022  Score=43.84  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4899999999999999999884

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.38  E-value=0.0025  Score=44.09  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -.+++.|++|+|||+|.+.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            478999999999999998777544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.37  E-value=0.0025  Score=44.15  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            47999999999999999999864

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.37  E-value=0.0017  Score=49.27  Aligned_cols=23  Identities=39%  Similarity=0.735  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +.+++|.|++|+|||++|..+.+
T Consensus       147 g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            57999999999999999988765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.0027  Score=44.06  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -.+++.|++|+|||+|...+...-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            379999999999999999998654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.36  E-value=0.0028  Score=49.65  Aligned_cols=26  Identities=31%  Similarity=0.528  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++.+++.||+|+|||++++.+++.+
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCChhHHHHHHHHHH
Confidence            36799999999999999999999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.0026  Score=44.23  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.35  E-value=0.0018  Score=44.22  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999998863

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.35  E-value=0.0026  Score=44.45  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||+|...+...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            48999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.34  E-value=0.0027  Score=43.91  Aligned_cols=23  Identities=26%  Similarity=0.605  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            48999999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.34  E-value=0.0027  Score=43.97  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999999853

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.33  E-value=0.0027  Score=44.10  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            48999999999999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.33  E-value=0.0027  Score=44.40  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            58999999999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.33  E-value=0.0025  Score=44.58  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||+|...+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.33  E-value=0.0027  Score=44.03  Aligned_cols=22  Identities=18%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.|++|+|||++...+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999998863

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.33  E-value=0.0028  Score=43.82  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||+|...+...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            48999999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.33  E-value=0.0028  Score=50.68  Aligned_cols=25  Identities=36%  Similarity=0.514  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.++|+||+|+|||+++..++...
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhh
Confidence            5689999999999999999888654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.32  E-value=0.0027  Score=44.89  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.0027  Score=44.76  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            47899999999999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.31  E-value=0.0024  Score=44.04  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999998864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.31  E-value=0.0027  Score=44.42  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.31  E-value=0.0028  Score=44.27  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            58999999999999999998753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.31  E-value=0.0027  Score=44.50  Aligned_cols=23  Identities=26%  Similarity=0.575  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.30  E-value=0.0032  Score=44.66  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +...+++||.|+|||++..++...++.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            356789999999999999999988853

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.29  E-value=0.0024  Score=44.07  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47999999999999999998753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=96.27  E-value=0.0071  Score=45.51  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .-.+++.|++|+|||++...+...
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCChHHHHHHHHhC
Confidence            358999999999999999888753

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=96.27  E-value=0.0038  Score=48.07  Aligned_cols=29  Identities=28%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.....-+++.|..|+||||+|-++|..+
T Consensus        22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~l   50 (349)
T 3ug7_A           22 KKDGTKYIMFGGKGGVGKTTMSAATGVYL   50 (349)
T ss_dssp             SSCSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence            33333456678999999999999998776

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.25  E-value=0.0032  Score=43.72  Aligned_cols=23  Identities=17%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            58999999999999999999863

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.25  E-value=0.0028  Score=43.63  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ...+++.|++|+|||++...+..
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.25  E-value=0.0029  Score=45.74  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..++|.|++|+|||++...+...
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCC
Confidence            48999999999999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.22  E-value=0.0029  Score=44.18  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|+||+|||+|...+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998853

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.22  E-value=0.0023  Score=48.22  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.|.||+|+||||+.++++....
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHhccccc
Confidence            45788999999999999999986553

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.22  E-value=0.0033  Score=44.16  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4889999999999999999885

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.22  E-value=0.0031  Score=43.52  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999884

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.21  E-value=0.0034  Score=44.32  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.20  E-value=0.0019  Score=44.24  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=19.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la   46 (174)
                      ...+++.|++|+|||++...+.
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            3589999999999999998875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.20  E-value=0.0035  Score=43.46  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            38899999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.20  E-value=0.0032  Score=44.14  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||+|...+..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4899999999999999999873

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.19  E-value=0.0024  Score=44.75  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999998863

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.17  E-value=0.0034  Score=43.79  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999998874

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.17  E-value=0.0043  Score=48.33  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ...|+++.||+|+|||++++.++..+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999988654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.16  E-value=0.0026  Score=47.98  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+.+.||+|+|||||.+.++.
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            3779999999999999999764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.16  E-value=0.0037  Score=43.97  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999998863

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.15  E-value=0.0032  Score=43.85  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      -.+++.|++|+|||++...+.
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999885

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.15  E-value=0.0024  Score=44.67  Aligned_cols=21  Identities=29%  Similarity=0.583  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      ..+++.|++|+|||+|...++
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999885

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.14  E-value=0.005  Score=50.61  Aligned_cols=26  Identities=31%  Similarity=0.592  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..+.
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            56788999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.14  E-value=0.0036  Score=44.40  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||++...+..
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4899999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.14  E-value=0.0045  Score=43.61  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.-.+++||+|+||||.+..+++.+
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4578899999999999988888766

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.13  E-value=0.003  Score=43.42  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999999999875

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.13  E-value=0.002  Score=44.23  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=10.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.13  E-value=0.0027  Score=50.22  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~   48 (174)
                      +.|.||+|+|||||.+.|+..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            889999999999999999854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.13  E-value=0.0037  Score=44.18  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|++|+|||+|...+..
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            3789999999999999998874

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.12  E-value=0.004  Score=43.68  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+++..+...
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            37899999999999999998753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.12  E-value=0.0035  Score=43.58  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|+|||++...+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999863

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.12  E-value=0.0039  Score=43.63  Aligned_cols=23  Identities=17%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+++.|++|+|||++...+...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.11  E-value=0.004  Score=43.86  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999998853

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.08  E-value=0.0038  Score=43.31  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||+|...+..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999998864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.05  E-value=0.0044  Score=43.56  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            58999999999999999988853

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.0047  Score=44.03  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+|...+...
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999998863

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.02  E-value=0.0069  Score=43.03  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |...++++|.||+||+++|..+...+|.
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~   37 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGA   37 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence            4567889999999999999999887763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.02  E-value=0.0044  Score=50.53  Aligned_cols=26  Identities=35%  Similarity=0.459  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+.|.||+|+|||||.+.++-.+
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45688899999999999999999755

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.02  E-value=0.0081  Score=46.27  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ...+++.|+||+||||+...++..
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999998753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.01  E-value=0.005  Score=44.46  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=18.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la   46 (174)
                      ++.+++.||+|+|||++...+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            4689999999999998665554

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.00  E-value=0.0044  Score=45.57  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..++|.|+||+||||+..++..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3789999999999999999874

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.00  E-value=0.0044  Score=46.04  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+.|.|+||+|||++...+..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            3688999999999999999985

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.00  E-value=0.0058  Score=43.21  Aligned_cols=31  Identities=29%  Similarity=0.396  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh---CCCCCee
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL---GPDTPFT   56 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l---~~~~~~~   56 (174)
                      ..+++++++|.||||.|-++|.+.   |..+-++
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v   62 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV   62 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            488899999999999999998655   4444344

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.00  E-value=0.0034  Score=43.40  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999988754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.99  E-value=0.0044  Score=44.22  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      ..+++.|+||+|||+|...+.
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999887

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.99  E-value=0.0013  Score=49.87  Aligned_cols=25  Identities=28%  Similarity=0.605  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|.||||+|||||.++|+..+
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccc
Confidence            5688999999999999999997544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.97  E-value=0.0047  Score=45.46  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..++|.|+||+|||++...+..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999974

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.95  E-value=0.0049  Score=42.97  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++.+.+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4899999999999999886654

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.95  E-value=0.0016  Score=47.17  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.+.||+|+||||+.++++..+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~   53 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIP   53 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhccccc
Confidence            457899999999999999998853

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.95  E-value=0.0053  Score=43.56  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||+|...+...
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            48999999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.94  E-value=0.01  Score=44.17  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHh-cC---cCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          7 ARRAAGVVLGMIKE-GK---IAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         7 ~~~~l~~~~~~~~~-g~---~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      +...+..+.+.+.. |.   .....+++.|.||+|||++..++..
T Consensus         4 ~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B            4 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHC
Confidence            34444555555543 21   1234799999999999999999974

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.93  E-value=0.0046  Score=50.83  Aligned_cols=26  Identities=31%  Similarity=0.612  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..+.
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhccC
Confidence            45788999999999999999998764

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=95.92  E-value=0.0061  Score=42.86  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +++++.+|+|+|||.++...+..+
T Consensus        49 ~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           49 KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999887776543

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=95.90  E-value=0.016  Score=43.52  Aligned_cols=25  Identities=28%  Similarity=0.605  Sum_probs=21.2

Q ss_pred             CceEEEEcC-CCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQ-PGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~Gp-pG~GKT~la~~la~~l   49 (174)
                      ++.++++|+ +|+|||+++..+|..+
T Consensus       104 ~kvI~vts~kgG~GKTtva~nLA~~l  129 (299)
T 3cio_A          104 NNILMITGATPDSGKTFVSSTLAAVI  129 (299)
T ss_dssp             CCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCChHHHHHHHHHHH
Confidence            467888876 8999999999999876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.90  E-value=0.0049  Score=44.11  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+++.|++|+|||++...+..
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d2cqaa1	82	b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TI	5e-18
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	7e-08
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	3e-06
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	2e-05
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	8e-05
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	9e-05
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	9e-05
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	4e-04
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	5e-04
d1qvra2	387	c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus	7e-04
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	8e-04
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	9e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.001
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	0.001
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.003
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	0.003
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.003

>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: TIP49 domain
domain: RuvB-like 2 protein, RUVBL2 (TIP49b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (177), Expect = 5e-18
 Identities = 42/50 (84%), Positives = 47/50 (94%)

Query: 73  EETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAI 122
           EETE+IEGEVVEIQI+RPATG GSKVGKLT+KTTEMET YDLG KMIE++
Sbjct: 2   EETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESL 51

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 48.5 bits (115), Expect = 7e-08
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 14  VLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
           V+      + A   +++ G+  +GKT +   L +ALG    + ++   E  S        
Sbjct: 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNV 171

Query: 74  E 74
            
Sbjct: 172 F 172

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 19/166 (11%), Positives = 38/166 (22%), Gaps = 14/166 (8%)

Query: 15  LGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS--------- 65
           L  +       R  L  G   +GKT +A  L +  G      ++                
Sbjct: 144 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG--GKALNVNLPLDRLNFELGVAID 201

Query: 66  --LEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIG 123
             L + +  + T     ++   Q       L   +        E +            I 
Sbjct: 202 QFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV 261

Query: 124 TAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNERNEI 169
           T         +       I        +      +  L++    + 
Sbjct: 262 TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSE-FLLEKRIIQS 306

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 19/146 (13%)

Query: 2   VGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGS 61
           VGQ   + A  ++L  +  G      +L+ G  GTGK+     LA  L       ++ G 
Sbjct: 10  VGQEDMKLA--LLLTAVDPG---IGGVLVFGDRGTGKSTAVRALAALLP---EIEAVEGC 61

Query: 62  EIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEA 121
            + S  +    +   ++   V+          LG    ++                +  A
Sbjct: 62  PVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVG-----------ALDIERA 110

Query: 122 IGTAYSSPHGIPIDLLDRMVIIPTQP 147
           I     +     +   +R  +   + 
Sbjct: 111 ISKGEKAFEPGLLARANRGYLYIDEC 136

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 24 AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVV 83
           G  +LL+G PG+GK+ IA  LA   G   P       +++    +   +       +  
Sbjct: 3  GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60

Query: 84 EIQIERPA 91
           + ++  A
Sbjct: 61 RMIMQIAA 68

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 2  VGQLQARRAAGVVL---------GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD 52
          +GQ  A+RA  + L               ++  + IL+ G  G GKT IA  LA+    +
Sbjct: 17 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--N 74

Query: 53 TPFTSMAGSEI 63
           PF  +  ++ 
Sbjct: 75 APFIKVEATKF 85

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 9e-05
 Identities = 17/121 (14%), Positives = 36/121 (29%)

Query: 20  EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIE 79
              +AG    L    G GK+ +A+ LA  +        +       +     E+    I 
Sbjct: 24  PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIH 83

Query: 80  GEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDR 139
             +  +     A    +    L ++         +  +  + +  A      + +D L R
Sbjct: 84  HRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRR 143

Query: 140 M 140
            
Sbjct: 144 F 144

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 10/173 (5%)

Query: 1   MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
            +GQ + ++   V L   K  K     +LL G PG GKT +A  +A  LG        +G
Sbjct: 11  YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--VNLRVTSG 68

Query: 61  SEIYSLEMNKTEEETEMIEGEVVEIQIERPATGLGSKVGKLTMK--TTEMETSYDLGAKM 118
             I             + EG+++ I      +    +     M+    ++       A+ 
Sbjct: 69  PAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAART 128

Query: 119 IEA------IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVKNE 165
           I        +  A + P  I   LL R  I+    Y   E  A   +R  +  
Sbjct: 129 IRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLL 181

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 5e-04
 Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 2/149 (1%)

Query: 25  GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVE 84
           G  + L G  G GKT ++M L + L            +     +NK    +     E V 
Sbjct: 19  GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR 78

Query: 85  IQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIP 144
              E       + +  +T   +      +   ++ E     +          L       
Sbjct: 79  RIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPF--FEVFVDAPLHVCEQRD 136

Query: 145 TQPYQDEEIQAILKIRLVKNERNEIYNHP 173
            +    +     +K     +   E    P
Sbjct: 137 VKGLYKKARAGEIKGFTGIDSEYEKPEAP 165

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 28  ILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVE 84
            +L G+PG GKTAI  GLAQ +        + G  I SL+M       +   GE  E
Sbjct: 46  PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY-RGEFEE 101

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA 48
            + G+    A+L+   PG G  A+   L++ 
Sbjct: 17 SYQAGRGHH-ALLIQALPGMGDDALIYALSRY 47

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.5 bits (83), Expect = 9e-04
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEI 85
           A LL GQPG+GKT++   + +          +          N  E      +  V  +
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEET--QGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHV 90

Query: 86 QIERP 90
               
Sbjct: 91 TPYSN 95

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 24 AGRAILLAGQPGTGKTAIAMGLAQALG 50
            R I+L G    GK+ I   L   L 
Sbjct: 2  TTRMIILNGGSSAGKSGIVRCLQSVLP 28

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 1  MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 60
          +    +       +  +  + +     +LL G  GTGK    M L +++     +     
Sbjct: 13 LSHNEELTNF---LKSLSDQPRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 68

Query: 61 SEIYSLEMNKTEEETEMIEGEVVEI 85
             +    N+  E   +     +EI
Sbjct: 69 VRQFVTASNRKLELNVVSSPYHLEI 93

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 24/146 (16%), Positives = 39/146 (26%), Gaps = 5/146 (3%)

Query: 26  RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIEGEVVEI 85
           R I L G  G GK+ I   LAQ L     F             +         E    + 
Sbjct: 3   RNIFLVGPMGAGKSTIGRQLAQQLN--MEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDR 60

Query: 86  QIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPT 145
           + +        +   L      +++           +     +        L R      
Sbjct: 61  EEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETT---IEKQLARTQRDKK 117

Query: 146 QPYQDEEIQAILKIRLVKNERNEIYN 171
           +P    E      +  + NERN +Y 
Sbjct: 118 RPLLHVETPPREVLEALANERNPLYE 143

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 21 GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE 73
          G    + +LL G PG GKT +A  +A       PF + +GS+   + +     
Sbjct: 38 GARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA 88

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEETEMIE 79
          + + + G   +GK+ +   LA      T      G E    ++   E+  +  +
Sbjct: 8  KTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSD 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.88
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.88
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.85
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.84
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.82
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.82
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.78
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.78
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.75
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.74
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.72
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.71
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.69
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.68
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.68
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.66
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.61
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.6
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.59
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.53
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.51
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.39
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.38
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.35
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.33
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.3
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.16
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	98.87
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.69
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.6
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.53
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.5
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.49
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.49
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.46
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.46
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.45
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.43
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.42
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.42
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.41
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.4
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.37
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.36
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.34
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.33
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.32
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.31
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.3
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.3
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.29
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.28
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.28
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.24
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.21
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.21
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.18
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.11
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.06
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.94
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.93
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.92
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.92
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.87
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.83
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.82
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.78
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.78
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.76
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.74
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.73
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.72
d1okkd2	207	GTPase domain of the signal recognition particle r	97.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.69
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.68
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.62
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.6
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.51
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.5
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.47
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.46
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.33
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.3
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.26
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.23
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.21
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.2
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.19
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.19
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.16
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.11
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.06
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.06
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.04
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.04
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.03
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.0
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.0
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.99
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.98
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.96
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.94
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.94
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.9
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.88
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.88
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.87
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.86
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.86
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.82
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.8
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.79
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.79
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.79
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.79
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.78
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.73
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.72
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.71
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.71
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.7
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.67
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.66
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.66
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.64
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.64
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.62
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.61
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.59
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.59
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.57
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.57
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.56
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.56
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.56
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.56
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.55
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.55
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.53
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.5
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.5
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.5
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.47
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.45
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.43
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.42
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.4
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.39
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.38
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.38
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.38
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.37
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.35
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.35
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.3
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.3
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.3
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.29
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.24
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.2
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.18
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.18
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.16
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.13
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.13
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.13
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.06
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.04
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.99
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.96
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.92
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.88
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	95.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.84
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.83
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.8
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.8
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	95.77
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.76
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.71
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.69
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.68
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.66
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.65
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.65
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.62
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.54
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.44
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.4
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.17
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.96
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.82
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.82
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.69
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.63
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.61
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.42
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.4
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.28
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.15
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.09
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.08
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.86
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.77
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.62
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	93.42
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	93.34
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	93.23
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.09
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.83
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.78
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.67
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	92.66
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.54
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	92.37
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.31
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.31
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.97
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.93
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.87
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.86
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	91.8
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	91.75
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	91.66
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.53
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.46
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	91.34
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	90.88
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	90.65
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	90.6
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	90.57
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.41
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	90.04
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	89.67
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	89.54
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	89.52
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.19
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.14
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	89.0
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	88.97
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	88.62
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	88.23
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	87.94
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.53
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.82
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	86.37
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	85.63
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	85.56
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.55
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	84.95
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	84.4
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	84.36
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.14
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	83.36
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	83.03
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	81.13

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.7e-23  Score=152.46  Aligned_cols=160  Identities=21%  Similarity=0.279  Sum_probs=111.2

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEE   73 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~   73 (174)
                      |+|+++++++|..+...+..       |...++++||+||||||||++|+++|++++  .+++.++++.+.+.++++.+.
T Consensus        11 i~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~--~~~~~i~~~~l~~~~~g~~~~   88 (247)
T d1ixza_          11 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAA   88 (247)
T ss_dssp             CCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHH
T ss_pred             HccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcC--CCEEEEEhHHhhhccccHHHH
Confidence            68999999998877766543       445568999999999999999999999998  558888888888877766552


Q ss_pred             -------hh-hhccCcEEEEEEeccCCCCCCcc--ce---eEEEecc---chhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         74 -------ET-EMIEGEVVEIQIERPATGLGSKV--GK---LTMKTTE---METSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        74 -------~~-~~~~~~i~~~~id~~~~~~~~~~--~~---~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                             .+ ...|..++++++|.++...+...  .+   .......   ++......+.++  |+|| |.+..++++++
T Consensus        89 ~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~viv--i~tT-n~~~~ld~al~  165 (247)
T d1ixza_          89 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV--MAAT-NRPDILDPALL  165 (247)
T ss_dssp             HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE--EEEE-SCGGGSCGGGG
T ss_pred             HHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEE--EEeC-CCccccCHhHc
Confidence                   22 22455777788887743321110  00   0011111   111122233344  5566 88999999998


Q ss_pred             --cce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        138 --DRM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       138 --sR~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                        +|| ..|++++|+.++..+|++.++.+..
T Consensus       166 R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~  196 (247)
T d1ixza_         166 RPGRFDRQIAIDAPDVKGREQILRIHARGKP  196 (247)
T ss_dssp             STTSSCEEEECCSCCHHHHHHHHHHHHTTSC
T ss_pred             CCCCCcEEEEECCcCHHHHHHHHHHHhcccC
Confidence              599 7999999999999999999886543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.4e-23  Score=151.09  Aligned_cols=160  Identities=20%  Similarity=0.291  Sum_probs=112.1

Q ss_pred             CCchHHHHHHHHHHHHHHHh-------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKE-------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE-   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~-------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-   72 (174)
                      |+|.+++++++..+...++.       |..+++++||+||||||||++|+++|++++  .+++.++++++.+.++++.+ 
T Consensus        14 i~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~--~~~~~i~~~~l~~~~~g~~~~   91 (256)
T d1lv7a_          14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VPFFTISGSDFVEMFVGVGAS   91 (256)
T ss_dssp             SCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CCEEEECSCSSTTSCCCCCHH
T ss_pred             HhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcC--CCEEEEEhHHhhhcchhHHHH
Confidence            68999999998887776653       334468999999999999999999999998  56888999888887766655 


Q ss_pred             ------hhh-hhccCcEEEEEEeccCCCCCC--ccce---eEEEec---cchhhhccccccchhhhcccCCCCCCCHHhh
Q psy14616         73 ------EET-EMIEGEVVEIQIERPATGLGS--KVGK---LTMKTT---EMETSYDLGAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        73 ------~~~-~~~~~~i~~~~id~~~~~~~~--~~~~---~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                            +.+ ...|..++++++|.++...+.  ....   ......   .++...+..+.++  |+|| |.+..++++++
T Consensus        92 ~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~v--IatT-n~~~~ld~al~  168 (256)
T d1lv7a_          92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV--IAAT-NRPDVLDPALL  168 (256)
T ss_dssp             HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE--EEEE-SCTTTSCGGGG
T ss_pred             HHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEE--EEeC-CCcccCCHhHc
Confidence                  222 223556677788877443211  1110   001111   1122222333444  6666 89999999998


Q ss_pred             c--ce-eeEecCCCCHHHHHHHHHHHhchhh
Q psy14616        138 D--RM-VIIPTQPYQDEEIQAILKIRLVKNE  165 (174)
Q Consensus       138 s--R~-~~i~~~~~~~~e~~~il~~~l~~~~  165 (174)
                      +  || ..+++++|+.++..+|++.++.+..
T Consensus       169 R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~  199 (256)
T d1lv7a_         169 RPGRFDRQVVVGLPDVRGREQILKVHMRRVP  199 (256)
T ss_dssp             STTSSCEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred             CCCCCCEEEECCCcCHHHHHHHHHHhccCCC
Confidence            5  99 8999999999999999999875543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.8e-22  Score=147.99  Aligned_cols=159  Identities=22%  Similarity=0.225  Sum_probs=109.5

Q ss_pred             CCchHHHHHHHHHHHHH-HH-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-IK-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |+|++++++.|...... ++       -|..+++++|||||||||||++++++|++++  .++..++++.+.+...+...
T Consensus         6 v~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~--~~~~~i~~~~l~~~~~g~~~   83 (258)
T d1e32a2           6 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESE   83 (258)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTT--CEEEEECHHHHTTSCTTHHH
T ss_pred             hccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhC--CeEEEEEchhhcccccccHH
Confidence            68999999888776543 22       2666678999999999999999999999998  45778887777666555443


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCC--Cccce---eEEEeccchhhhccccccchhhhcccCCCCCCCHHhhc-
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLG--SKVGK---LTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD-  138 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s-  138 (174)
                             +.+ ...|..++++++|.++....  .....   .......+.......+.++  ++|| |.+..+++++++ 
T Consensus        84 ~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv--i~tT-n~~~~ld~al~r~  160 (258)
T d1e32a2          84 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV--MAAT-NRPNSIDPALRRF  160 (258)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEE--EEEE-SCGGGSCGGGTST
T ss_pred             HHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccE--EEeC-CCccccchhhhhc
Confidence                   222 23456677778888744321  11110   0000111122222233344  5566 899999999997 


Q ss_pred             -ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        139 -RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       139 -R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                       || ..|+++.|+.++..+|++.++.+.
T Consensus       161 gRfd~~i~~~~P~~~~R~~il~~~l~~~  188 (258)
T d1e32a2         161 GRFDREVDIGIPDATGRLEILQIHTKNM  188 (258)
T ss_dssp             TSSCEEEECCCCCHHHHHHHHHHTTTTS
T ss_pred             ccccceeECCCCCHHHHHHHhhhhccCc
Confidence             89 899999999999999999988654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=7.5e-21  Score=138.37  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=95.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhhh-hh-c
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEET-EM-I   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~   78 (174)
                      ||||+++++.+..+...........+++|||||||||||++|+++|++++++  +..++........  ...... .. .
T Consensus        11 ivGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~   86 (238)
T d1in4a2          11 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLVKQG--DMAAILTSLER   86 (238)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCCSHH--HHHHHHHHCCT
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCC--cccccCcccccHH--HHHHHHHhhcc
Confidence            6899999999887776554433344699999999999999999999999855  5556654443211  111111 11 1


Q ss_pred             cCcEEEEEEeccCCCCCC------ccce--eEEEeccchhh--hccccccchhhhcccCCCCCCCHHhhcce-eeEecCC
Q psy14616         79 EGEVVEIQIERPATGLGS------KVGK--LTMKTTEMETS--YDLGAKMIEAIGTAYSSPHGIPIDLLDRM-VIIPTQP  147 (174)
Q Consensus        79 ~~~i~~~~id~~~~~~~~------~~~~--~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~l~sR~-~~i~~~~  147 (174)
                      ...++++++|++.....+      +...  ...........  ....+.++  |+++ +.+..+++++++|| .++.+.+
T Consensus        87 ~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--I~at-~~~~~~~~~~~~r~~~~~~~~~  163 (238)
T d1in4a2          87 GDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL--VGAT-TRSGLLSSPLRSRFGIILELDF  163 (238)
T ss_dssp             TCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE--EEEE-SCGGGSCHHHHTTCSEEEECCC
T ss_pred             CCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEE--EEec-CCCccccccceeeeeEEEEecC
Confidence            234556677666211100      0000  00000000111  11233444  5565 67778999999999 6789999


Q ss_pred             CCHHHHHHHHHHHhchh
Q psy14616        148 YQDEEIQAILKIRLVKN  164 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~~  164 (174)
                      ++.+++..+++.....+
T Consensus       164 ~~~~~~~~~l~~~~~~~  180 (238)
T d1in4a2         164 YTVKELKEIIKRAASLM  180 (238)
T ss_dssp             CCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhhhc
Confidence            99999999998866443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=2.2e-20  Score=141.12  Aligned_cols=156  Identities=18%  Similarity=0.280  Sum_probs=98.9

Q ss_pred             CCchHHHHHHHHHHHHH--HH-------hcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh--hhh
Q psy14616          1 MVGQLQARRAAGVVLGM--IK-------EGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL--EMN   69 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~--~~-------~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~   69 (174)
                      ||||++|++.+......  -+       ....++.++||+||||||||++|+++|+.++  .++..++.+.+...  ..+
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~~~~~~~~~   93 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFTEVGYVGK   93 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGGSSCCSGGG
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc--cchhcccccccccceeEee
Confidence            69999999887654311  01       1112568999999999999999999999998  45777777665421  222


Q ss_pred             hhh-------hhhh------hccCcEEEEEEeccCCCCCCccc--------eeEE--E----eccchhhhccccccchhh
Q psy14616         70 KTE-------EETE------MIEGEVVEIQIERPATGLGSKVG--------KLTM--K----TTEMETSYDLGAKMIEAI  122 (174)
Q Consensus        70 ~~~-------~~~~------~~~~~i~~~~id~~~~~~~~~~~--------~~~~--~----~~~~~~~~~~~~~~~~~i  122 (174)
                      ...       ..+.      ..++.++++|||++.........        +..+  .    ........+.++..|  +
T Consensus        94 ~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilf--i  171 (309)
T d1ofha_          94 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF--I  171 (309)
T ss_dssp             STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE--E
T ss_pred             eccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeE--E
Confidence            222       1221      13678999999998433211100        0000  0    001111223344445  4


Q ss_pred             hc---ccCCCCCCCHHhhcce-eeEecCCCCHHHHHHHHHHH
Q psy14616        123 GT---AYSSPHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       123 ~~---~~~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~  160 (174)
                      ++   .++++..+.|++++|+ .++.+++|+.+++.+|+...
T Consensus       172 ~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~  213 (309)
T d1ofha_         172 ASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP  213 (309)
T ss_dssp             EEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred             eccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHH
Confidence            33   2466778999999999 88999999999999998653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.8e-20  Score=134.74  Aligned_cols=158  Identities=20%  Similarity=0.145  Sum_probs=99.2

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhh-hhh-c
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEE-TEM-I   78 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~   78 (174)
                      ||||+++++.+..+....+.+..++.++||+||||||||++|+++|+.++..  +...+.+......  ..... ... .
T Consensus        11 ivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~   86 (239)
T d1ixsb2          11 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEKPG--DLAAILANSLE   86 (239)
T ss_dssp             SCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCCSHH--HHHHHHHTTCC
T ss_pred             hCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCccccch--hhHHHHHhhcc
Confidence            6999999999998888777766666899999999999999999999999854  5666655443211  11111 111 1


Q ss_pred             cC-cEEEEEEeccCCCCCC------ccceeEEEec----cchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         79 EG-EVVEIQIERPATGLGS------KVGKLTMKTT----EMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        79 ~~-~i~~~~id~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                      .+ .++++++|.+....+.      +.........    ........++..+  ++++++.....++.+.+||..+.+..
T Consensus        87 ~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~~~~~~~  164 (239)
T d1ixsb2          87 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL--IGATTRPGLITAPLLSRFGIVEHLEY  164 (239)
T ss_dssp             TTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEE--EEEESCCSSCSCGGGGGCSEEEECCC
T ss_pred             CCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEE--EeeccCcccccchhhcccceeeEeec
Confidence            22 4455677766221100      0000000000    0011112233444  66665555666777888889999999


Q ss_pred             CCHHHHHHHHHHHhchh
Q psy14616        148 YQDEEIQAILKIRLVKN  164 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~~  164 (174)
                      ++.+++.++++.....+
T Consensus       165 ~~~~~~~~i~~~~~~~~  181 (239)
T d1ixsb2         165 YTPEELAQGVMRDARLL  181 (239)
T ss_dssp             CCHHHHHHHHHHHHGGG
T ss_pred             cChhhhhHHHHHHHHHh
Confidence            99999999999876543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=9.1e-22  Score=145.73  Aligned_cols=159  Identities=23%  Similarity=0.315  Sum_probs=106.7

Q ss_pred             CCchHHHHHHHHHHHHH-H-------HhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh
Q psy14616          1 MVGQLQARRAAGVVLGM-I-------KEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~-~-------~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   72 (174)
                      |+|.++++++|...... +       +.|..+++++||+||||||||++|+++|.+++  .+++.++++.+.+.+.+..+
T Consensus         9 i~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~--~~~~~~~~~~l~~~~~~~~~   86 (265)
T d1r7ra3           9 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESE   86 (265)
T ss_dssp             CSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTT--CEEEEECHHHHHTSCTTTHH
T ss_pred             hcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhC--CcEEEEEHHHhhhccccchH
Confidence            57888888777765432 2       22556678999999999999999999999998  55888888877776666554


Q ss_pred             -------hhh-hhccCcEEEEEEeccCCCCC--Ccc------ceeEEEeccchhhhccccccchhhhcccCCCCCCCHHh
Q psy14616         73 -------EET-EMIEGEVVEIQIERPATGLG--SKV------GKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDL  136 (174)
Q Consensus        73 -------~~~-~~~~~~i~~~~id~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l  136 (174)
                             +.+ ...|+.++++++|.++....  ...      +.+.....++.......+.++  |+|| |.+..+++++
T Consensus        87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~v--i~tt-n~~~~ld~al  163 (265)
T d1r7ra3          87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI--IGAT-NRPDIIDPAI  163 (265)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEE--EECC-BSCTTTSCGG
T ss_pred             HHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEE--EEeC-CCchhCCHHH
Confidence                   222 22356777889988754320  000      001111112222223334444  6666 8999999999


Q ss_pred             hc--ce-eeEecCCCCHHHHHHHHHHHhchh
Q psy14616        137 LD--RM-VIIPTQPYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       137 ~s--R~-~~i~~~~~~~~e~~~il~~~l~~~  164 (174)
                      ++  || .+|+++.|+.++..+|++.++.+.
T Consensus       164 ~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~  194 (265)
T d1r7ra3         164 LRPGRLDQLIYIPLPDEKSRVAILKANLRKS  194 (265)
T ss_dssp             GSSTTSEEEEECCCCCCHHHHHHHHHHTTCC
T ss_pred             hCCCCccEEEEecchHHHHHHHHHHHHhccC
Confidence            85  89 789999999999999999877553

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.2e-19  Score=131.00  Aligned_cols=146  Identities=16%  Similarity=0.225  Sum_probs=90.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---Ceeeecccccchhhhhhhh--hhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---PFTSMAGSEIYSLEMNKTE--EET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~~--~~~   75 (174)
                      +|||++++   ..+..+++++..+  ++||+||||+|||++|+.+|+++++..   ....+++++..+.......  ...
T Consensus        17 ~ig~~~~~---~~L~~~~~~~~~~--~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~   91 (224)
T d1sxjb2          17 IVGNKETI---DRLQQIAKDGNMP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFA   91 (224)
T ss_dssp             CCSCTHHH---HHHHHHHHSCCCC--CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred             hcCCHHHH---HHHHHHHHcCCCC--eEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHH
Confidence            68999998   4455566787765  899999999999999999999986431   2334444433221110000  000


Q ss_pred             ----hhc---cCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecC
Q psy14616         76 ----EMI---EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQ  146 (174)
Q Consensus        76 ----~~~---~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~  146 (174)
                          ...   ...++++++|.+...    .++..      ......  .+..+  +.++ +....+.++++|||..++|.
T Consensus        92 ~~~~~~~~~~~kviiiDe~d~~~~~----~~~~l------l~~~e~~~~~~~~--i~~~-~~~~~i~~~l~sr~~~i~~~  158 (224)
T d1sxjb2          92 QKKLHLPPGKHKIVILDEADSMTAG----AQQAL------RRTMELYSNSTRF--AFAC-NQSNKIIEPLQSQCAILRYS  158 (224)
T ss_dssp             HBCCCCCTTCCEEEEEESGGGSCHH----HHHTT------HHHHHHTTTTEEE--EEEE-SCGGGSCHHHHTTSEEEECC
T ss_pred             HhhccCCCcceEEEEEecccccchh----HHHHH------hhhccccccceee--eecc-CchhhhhhHHHHHHHHhhhc
Confidence                001   113445566665222    11111      111111  12223  3344 67788999999999999999


Q ss_pred             CCCHHHHHHHHHHHhchh
Q psy14616        147 PYQDEEIQAILKIRLVKN  164 (174)
Q Consensus       147 ~~~~~e~~~il~~~l~~~  164 (174)
                      +|+.+++..++...+.++
T Consensus       159 ~~~~~~i~~~l~~i~~~e  176 (224)
T d1sxjb2         159 KLSDEDVLKRLLQIIKLE  176 (224)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhc
Confidence            999999999999877554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=2e-19  Score=130.20  Aligned_cols=146  Identities=20%  Similarity=0.278  Sum_probs=92.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---CCeeeecccccchhhh-hhhh-hhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---TPFTSMAGSEIYSLEM-NKTE-EET   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~-~~~~-~~~   75 (174)
                      ||||+++++.   +..++++++.+  ++||+||||+|||++|+++|+++++.   ..+..+++++...... .... +..
T Consensus        26 iig~~~~~~~---l~~~i~~~~~~--~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~~~~~~~  100 (231)
T d1iqpa2          26 IVGQEHIVKR---LKHYVKTGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA  100 (231)
T ss_dssp             CCSCHHHHHH---HHHHHHHTCCC--EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred             ccCcHHHHHH---HHHHHHcCCCC--eEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHHHHHHHHH
Confidence            6899999954   55566777765  89999999999999999999988542   2345566554332111 0100 000


Q ss_pred             ------hhccCcEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhhcceeeEecCC
Q psy14616         76 ------EMIEGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQP  147 (174)
Q Consensus        76 ------~~~~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~  147 (174)
                            ......++++|+|.+...    .+..      +......  .+..+  ++++ |....++++++|||..+.+.+
T Consensus       101 ~~~~~~~~~~~iilide~d~~~~~----~~~~------ll~~l~~~~~~~~~--i~~~-n~~~~i~~~l~sR~~~i~~~~  167 (231)
T d1iqpa2         101 RTKPIGGASFKIIFLDEADALTQD----AQQA------LRRTMEMFSSNVRF--ILSC-NYSSKIIEPIQSRCAIFRFRP  167 (231)
T ss_dssp             HSCCGGGCSCEEEEEETGGGSCHH----HHHH------HHHHHHHTTTTEEE--EEEE-SCGGGSCHHHHHTEEEEECCC
T ss_pred             hhhhccCCCceEEeehhhhhcchh----HHHH------HhhhcccCCcceEE--Eecc-CChhhchHhHhCccccccccc
Confidence                  001223445566655222    1111      1111111  22333  4455 778889999999999999999


Q ss_pred             CCHHHHHHHHHHHhchh
Q psy14616        148 YQDEEIQAILKIRLVKN  164 (174)
Q Consensus       148 ~~~~e~~~il~~~l~~~  164 (174)
                      ++.+++..++++.+.++
T Consensus       168 ~~~~~~~~~l~~~~~~e  184 (231)
T d1iqpa2         168 LRDEDIAKRLRYIAENE  184 (231)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHh
Confidence            99999999999877543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.5e-18  Score=126.38  Aligned_cols=146  Identities=18%  Similarity=0.247  Sum_probs=90.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCC----------------------eeee
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTP----------------------FTSM   58 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~----------------------~~~~   58 (174)
                      +|||++++   ..+..++++++.+ +++||+||||+|||++|+++++.+++...                      +..+
T Consensus        14 lig~~~~~---~~L~~~i~~~~~~-~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   89 (239)
T d1njfa_          14 VVGQEHVL---TALANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI   89 (239)
T ss_dssp             SCSCHHHH---HHHHHHHHTTCCC-SEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEE
T ss_pred             ccChHHHH---HHHHHHHHcCCCC-eeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEe
Confidence            68999999   5566666888765 77999999999999999999999854321                      1122


Q ss_pred             cccccchh-hhhhhhhhhhh--ccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCC
Q psy14616         59 AGSEIYSL-EMNKTEEETEM--IEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPH  130 (174)
Q Consensus        59 ~~~~~~~~-~~~~~~~~~~~--~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~  130 (174)
                      +.++.... ++....+....  ..+   .++++++|.+ +.   ..++..      ....+.  .+..|  |.++ |...
T Consensus        90 ~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l-~~---~~q~~L------lk~lE~~~~~~~~--il~t-n~~~  156 (239)
T d1njfa_          90 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SR---HSFNAL------LKTLEEPPEHVKF--LLAT-TDPQ  156 (239)
T ss_dssp             ETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-CH---HHHHHH------HHHHHSCCTTEEE--EEEE-SCGG
T ss_pred             cchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccC-CH---HHHHHH------HHHHhcCCCCeEE--EEEc-CCcc
Confidence            22111110 01111111111  112   2455566665 22   222211      111122  23334  4555 6788


Q ss_pred             CCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        131 GIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       131 ~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      .+.++++|||.+++|++++.+++.+++......
T Consensus       157 ~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~  189 (239)
T d1njfa_         157 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE  189 (239)
T ss_dssp             GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ccChhHhhhhcccccccCcHHHhhhHHHHHHhh
Confidence            999999999999999999999999999887643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2.2e-18  Score=124.29  Aligned_cols=148  Identities=18%  Similarity=0.236  Sum_probs=90.0

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC---Ceeeecccccchhhhhhhhhh--h
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT---PFTSMAGSEIYSLEMNKTEEE--T   75 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--~   75 (174)
                      +|||++++   +.+..+++++..+  ++||+||||+|||++|+++|++++...   .....+.++..+.+.......  .
T Consensus        16 ivg~~~~~---~~L~~~i~~~~~~--~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~   90 (227)
T d1sxjc2          16 VYGQNEVI---TTVRKFVDEGKLP--HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA   90 (227)
T ss_dssp             CCSCHHHH---HHHHHHHHTTCCC--CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred             ccCcHHHH---HHHHHHHHcCCCC--eEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhcc
Confidence            68999998   5555566788766  799999999999999999999985432   123344433322222111111  0


Q ss_pred             ---hhccC---cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhcceeeEecCCCC
Q psy14616         76 ---EMIEG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQ  149 (174)
Q Consensus        76 ---~~~~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~  149 (174)
                         ....+   .++++++|.+ +.   ..++..+     ......+....  +..++|....+++++++||..++|.+++
T Consensus        91 ~~~~~~~~~~kiiiiDe~d~~-~~---~~~~~Ll-----~~le~~~~~~~--~~~~~~~~~~i~~~i~sr~~~i~~~~~~  159 (227)
T d1sxjc2          91 STRQIFSKGFKLIILDEADAM-TN---AAQNALR-----RVIERYTKNTR--FCVLANYAHKLTPALLSQCTRFRFQPLP  159 (227)
T ss_dssp             HBCCSSSCSCEEEEETTGGGS-CH---HHHHHHH-----HHHHHTTTTEE--EEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred             ccccccCCCeEEEEEeccccc-hh---hHHHHHH-----HHhhhccccee--eccccCcHHHhHHHHHHHHhhhcccccc
Confidence               11111   2333455544 21   1111111     11111222222  2333477889999999999999999999


Q ss_pred             HHHHHHHHHHHhchh
Q psy14616        150 DEEIQAILKIRLVKN  164 (174)
Q Consensus       150 ~~e~~~il~~~l~~~  164 (174)
                      .+++.+++.+.+.++
T Consensus       160 ~~~i~~~l~~I~~~e  174 (227)
T d1sxjc2         160 QEAIERRIANVLVHE  174 (227)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccc
Confidence            999999999876443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=4.9e-18  Score=123.99  Aligned_cols=41  Identities=22%  Similarity=0.195  Sum_probs=35.8

Q ss_pred             hhcccCCCCCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        122 IGTAYSSPHGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       122 i~~~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      |+++ |....++++++|||+.|+|++|+.+++.+++...+.+
T Consensus       165 Il~t-n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~  205 (252)
T d1sxje2         165 IMVC-DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN  205 (252)
T ss_dssp             EEEE-SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             eeee-ccccchhhhhhcchheeeecccchhhHHHHHHHHHHH
Confidence            4455 7889999999999999999999999999999887644

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=4.3e-17  Score=119.02  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=86.9

Q ss_pred             CCchHHHHHHHHHHHHHHHh------------cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKE------------GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEM   68 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~------------g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~   68 (174)
                      ++|+++++++|..+...+..            +....+++||+||||||||++|+++|+.++.+  +..++.+...+...
T Consensus        16 lig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~~~~~~   93 (253)
T d1sxja2          16 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDVRSKTL   93 (253)
T ss_dssp             CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSCCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh--hhccccccchhhHH
Confidence            68999999877776644332            22334689999999999999999999999854  55666554433221


Q ss_pred             hh--hhhh---------------hhhccCcEEEEEEecc--CCCCCCccceeEEEeccchhhhccccccchhhhcccCCC
Q psy14616         69 NK--TEEE---------------TEMIEGEVVEIQIERP--ATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP  129 (174)
Q Consensus        69 ~~--~~~~---------------~~~~~~~i~~~~id~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  129 (174)
                      ..  ..+.               .....+....+.+|+.  +...  ..+...   . +..........+  +++++...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~--~~~~~~---~-~~~~~~~~~~~i--i~i~~~~~  165 (253)
T d1sxja2          94 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--DRGGVG---Q-LAQFCRKTSTPL--ILICNERN  165 (253)
T ss_dssp             HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--STTHHH---H-HHHHHHHCSSCE--EEEESCTT
T ss_pred             HHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccc--hhhhhH---H-Hhhhhccccccc--cccccccc
Confidence            11  0000               0001122222333332  1111  111000   0 000001111122  23332344


Q ss_pred             CCCCHHhhcceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        130 HGIPIDLLDRMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ....+.+++||..++|++|+.+++..+++..+.+
T Consensus       166 ~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~  199 (253)
T d1sxja2         166 LPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR  199 (253)
T ss_dssp             SSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccceeeeeeccccchhHHHHHHHHHHHH
Confidence            4566689999999999999999999999987654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.1e-18  Score=122.82  Aligned_cols=147  Identities=13%  Similarity=0.107  Sum_probs=85.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC----CCCeeeecccccchhhhhh--hhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP----DTPFTSMAGSEIYSLEMNK--TEEE   74 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~--~~~~   74 (174)
                      +|||+++++   .+..+++++..+  +++|+||||+|||++++++|+++..    .......+.+.........  ..+.
T Consensus        14 iig~~~~~~---~l~~~i~~~~~~--~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (237)
T d1sxjd2          14 VTAQDHAVT---VLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF   88 (237)
T ss_dssp             CCSCCTTHH---HHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred             ccCcHHHHH---HHHHHHHcCCCC--eEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHH
Confidence            689998884   455556777655  7999999999999999999998721    1223334433322211111  0010


Q ss_pred             h-------------hhc--cC-cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCCCCHHhhc
Q psy14616         75 T-------------EMI--EG-EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLLD  138 (174)
Q Consensus        75 ~-------------~~~--~~-~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~s  138 (174)
                      .             ...  +. .++++|+|.+...    .++....     ..........  ++.+++....++++++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~----~~~~l~~-----~~~~~~~~~~--~i~~~~~~~~~~~~l~s  157 (237)
T d1sxjd2          89 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD----AQSALRR-----TMETYSGVTR--FCLICNYVTRIIDPLAS  157 (237)
T ss_dssp             HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH----HHHHHHH-----HHHHTTTTEE--EEEEESCGGGSCHHHHH
T ss_pred             hhhhhhhhhHHHHhhccccCceEEEEecccccCHH----HHHHHhh-----cccccccccc--ccccccccccccccccc
Confidence            0             000  11 2333455554211    1111000     0001111111  23333677889999999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHhch
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                      ||+.+.|.+++.+++.++|+..+.+
T Consensus       158 r~~~i~f~~~~~~~~~~~L~~i~~~  182 (237)
T d1sxjd2         158 QCSKFRFKALDASNAIDRLRFISEQ  182 (237)
T ss_dssp             HSEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             hhhhhccccccccccchhhhhhhhh
Confidence            9999999999999999999987654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.3e-17  Score=121.80  Aligned_cols=154  Identities=19%  Similarity=0.240  Sum_probs=98.6

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhh-----hhh-
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLE-----MNK-   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~-   70 (174)
                      ||||++|++.+.........|..    |...+||+||||||||++|+.+|+.++  .+++.++++.+....     .+. 
T Consensus        24 viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s~~~~~~~~~~l~g~~  101 (315)
T d1r6bx3          24 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEYMERHTVSRLIGAP  101 (315)
T ss_dssp             SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred             ecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc--CCeeEeccccccchhhhhhhcccC
Confidence            69999999888776655554432    234789999999999999999999998  457777766553211     010 


Q ss_pred             ------hh-----hhhhhc-cCcEEEEEEeccCCCCCCcccee--------EEEeccchhhhccccccchhhhcccCCC-
Q psy14616         71 ------TE-----EETEMI-EGEVVEIQIERPATGLGSKVGKL--------TMKTTEMETSYDLGAKMIEAIGTAYSSP-  129 (174)
Q Consensus        71 ------~~-----~~~~~~-~~~i~~~~id~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  129 (174)
                            ..     ..-... .+.++++++|++.+.    .++.        .+.+. .....+..+.++  ++|++-.. 
T Consensus       102 ~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~----V~~~lLqild~G~ltd~-~Gr~vdf~n~ii--I~Tsnig~~  174 (315)
T d1r6bx3         102 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD----VFNILLQVMDNGTLTDN-NGRKADFRNVVL--VMTTNAGVR  174 (315)
T ss_dssp             SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHH----HHHHHHHHHHHSEEEET-TTEEEECTTEEE--EEEECSSCC
T ss_pred             CCccccccCChhhHHHHhCccchhhhcccccccch----HhhhhHHhhccceecCC-CCCccCccceEE--EeccchhhH
Confidence                  00     001111 346778899887221    1110        12221 123445555555  55552111 


Q ss_pred             -----------------------CCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        130 -----------------------HGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       130 -----------------------~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                             ..+.|.+++|+ .++.|.+++.+++.+|+...+..
T Consensus       175 ~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~  232 (315)
T d1r6bx3         175 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE  232 (315)
T ss_dssp             -----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHH
Confidence                                   12789999999 78999999999999999887643

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.4e-17  Score=117.55  Aligned_cols=137  Identities=14%  Similarity=0.137  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh------------------------
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL------------------------   66 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~------------------------   66 (174)
                      .+.+...+.+++.+ +++||+||||+|||++|+.+|+.+.+......-.++.+.++                        
T Consensus        11 ~~~l~~~~~~~~l~-h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~   89 (207)
T d1a5ta2          11 FEKLVASYQAGRGH-HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLG   89 (207)
T ss_dssp             HHHHHHHHHTTCCC-SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBC
T ss_pred             HHHHHHHHHcCCcC-eEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccc
Confidence            47777788888876 77999999999999999999999854422111111111110                        


Q ss_pred             --hhhhhhhhhhhc--cC---cEEEEEEeccCCCCCCccceeEEEeccchhhhcc--ccccchhhhcccCCCCCCCHHhh
Q psy14616         67 --EMNKTEEETEMI--EG---EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDL--GAKMIEAIGTAYSSPHGIPIDLL  137 (174)
Q Consensus        67 --~~~~~~~~~~~~--~~---~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~l~~~l~  137 (174)
                        .+....+.....  .+   .++++++|.+ +.   ..++..+      ...+.  .++.|  |.++ ++...+.++++
T Consensus        90 ~~~ir~l~~~~~~~~~~~~~kviIide~d~l-~~---~a~n~Ll------k~lEep~~~~~f--Il~t-~~~~~ll~tI~  156 (207)
T d1a5ta2          90 VDAVREVTEKLNEHARLGGAKVVWVTDAALL-TD---AAANALL------KTLEEPPAETWF--FLAT-REPERLLATLR  156 (207)
T ss_dssp             HHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-CH---HHHHHHH------HHHTSCCTTEEE--EEEE-SCGGGSCHHHH
T ss_pred             cchhhHHhhhhhhccccCccceEEechhhhh-hh---hhhHHHH------HHHHhhccccee--eeee-cChhhhhhhhc
Confidence              000000100000  11   2344455555 22   1222111      11122  23344  4455 67788999999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      |||+.+.|++++.+++.++|+...
T Consensus       157 SRc~~i~~~~~~~~~~~~~L~~~~  180 (207)
T d1a5ta2         157 SRCRLHYLAPPPEQYAVTWLSREV  180 (207)
T ss_dssp             TTSEEEECCCCCHHHHHHHHHHHC
T ss_pred             ceeEEEecCCCCHHHHHHHHHHcC
Confidence            999999999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.66  E-value=1.2e-17  Score=121.97  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhcC-cCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhh--------hhhhh
Q psy14616          7 ARRAAGVVLGMIKEGK-IAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTE--------EETEM   77 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~-~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~   77 (174)
                      +.+....+.+.++++. .|++++||+||||||||++|+++|+.++  .+++.+++.+.+....+...        +.+..
T Consensus        21 i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~   98 (246)
T d1d2na_          21 VLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK   98 (246)
T ss_dssp             HHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccc--ccccccccccccccccccchhhhhhhhhhhhhh
Confidence            3444555555556544 3457899999999999999999999998  55777776654432222211        22222


Q ss_pred             -ccCcEEEEEEeccCCCCCC--ccceeEEE--eccchhhhcc-ccccchhhhcccCCCCCCCHH-hhcce-eeEecCCCC
Q psy14616         78 -IEGEVVEIQIERPATGLGS--KVGKLTMK--TTEMETSYDL-GAKMIEAIGTAYSSPHGIPID-LLDRM-VIIPTQPYQ  149 (174)
Q Consensus        78 -~~~~i~~~~id~~~~~~~~--~~~~~~~~--~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~-l~sR~-~~i~~~~~~  149 (174)
                       .|+.++++|+|.+......  ...+..+.  ...+...... .++++  |+|| |.+..++++ +.+|| ..|+++.++
T Consensus        99 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--i~tT-n~~~~ld~~~~~~rF~~~i~~P~~~  175 (246)
T d1d2na_          99 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI--IGTT-SRKDVLQEMEMLNAFSTTIHVPNIA  175 (246)
T ss_dssp             SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE--EEEE-SCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred             cccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceee--eecc-CChhhccchhhcCccceEEecCCch
Confidence             2456777899887443211  11110000  0111111111 12334  5666 777777654 77899 778887665


Q ss_pred             -HHHHHHHHHHH
Q psy14616        150 -DEEIQAILKIR  160 (174)
Q Consensus       150 -~~e~~~il~~~  160 (174)
                       .+++.++++..
T Consensus       176 ~r~~il~~l~~~  187 (246)
T d1d2na_         176 TGEQLLEALELL  187 (246)
T ss_dssp             EHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhc
Confidence             55666666653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=9.2e-16  Score=115.61  Aligned_cols=157  Identities=22%  Similarity=0.296  Sum_probs=97.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCc----CCceEEEEcCCCCcHHHHHHHHHHHh-CCCCCeeeecccccchhh--------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKI----AGRAILLAGQPGTGKTAIAMGLAQAL-GPDTPFTSMAGSEIYSLE--------   67 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~----~~~~~ll~GppG~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~--------   67 (174)
                      |+||+++++.+.........|..    |...++|+||+|||||.+|+.+|+.+ +...+++.++.+++....        
T Consensus        25 v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~  104 (315)
T d1qvra3          25 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA  104 (315)
T ss_dssp             SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---
T ss_pred             EeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCC
Confidence            68999999888776655544332    22367899999999999999999987 545667777765543211        


Q ss_pred             ----hhh-----hhhhhhhcc-CcEEEEEEeccCCCCCC------ccceeEEEeccchhhhccccccchhhhcccCC---
Q psy14616         68 ----MNK-----TEEETEMIE-GEVVEIQIERPATGLGS------KVGKLTMKTTEMETSYDLGAKMIEAIGTAYSS---  128 (174)
Q Consensus        68 ----~~~-----~~~~~~~~~-~~i~~~~id~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---  128 (174)
                          .+.     +.+.....| +.++++|+|++-+...+      +.+  .+.+ ......+..+.++  ++|+ |-   
T Consensus       105 ~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g--~~~~-~~gr~v~~~~~i~--i~ts-nlG~~  178 (315)
T d1qvra3         105 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDG--RLTD-SHGRTVDFRNTVI--ILTS-NLGSP  178 (315)
T ss_dssp             -----------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTT--EECC-SSSCCEECTTEEE--EEEC-CTTHH
T ss_pred             CCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccC--ceeC-CCCcEecCcceEE--EEec-ccChH
Confidence                110     111111223 56777899987211100      001  1111 1123344455555  5555 21   


Q ss_pred             -----------------------CCCCCHHhhcce-eeEecCCCCHHHHHHHHHHHhch
Q psy14616        129 -----------------------PHGIPIDLLDRM-VIIPTQPYQDEEIQAILKIRLVK  163 (174)
Q Consensus       129 -----------------------~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~~  163 (174)
                                             ...+.|.+++|+ .++.|.+++.+++.+|+...+..
T Consensus       179 ~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~  237 (315)
T d1qvra3         179 LILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY  237 (315)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred             HHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHH
Confidence                                   134899999999 78899999999999999876643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.60  E-value=3.1e-15  Score=114.66  Aligned_cols=62  Identities=31%  Similarity=0.467  Sum_probs=46.8

Q ss_pred             CCchHHHHHHHHHHHH----------H---------------HHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCe
Q psy14616          1 MVGQLQARRAAGVVLG----------M---------------IKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPF   55 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~----------~---------------~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~   55 (174)
                      ||||++|++++.....          .               ..+...|+.++||.||+|||||.+|+.||+.++  .++
T Consensus        19 ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~--~~~   96 (364)
T d1um8a_          19 VIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--IPI   96 (364)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCE
T ss_pred             ecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcc--cce
Confidence            7999999988775431          0               111244668999999999999999999999986  557


Q ss_pred             eeecccccc
Q psy14616         56 TSMAGSEIY   64 (174)
Q Consensus        56 ~~~~~~~~~   64 (174)
                      +.+.++.+.
T Consensus        97 ir~D~s~~~  105 (364)
T d1um8a_          97 AISDATSLT  105 (364)
T ss_dssp             EEEEGGGCC
T ss_pred             eehhhhhcc
Confidence            777665554

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.59  E-value=1.7e-17  Score=124.73  Aligned_cols=131  Identities=12%  Similarity=0.116  Sum_probs=84.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchhhhhhhhhh-hhhc-----cCcEEEEEEeccCCCCCCccc
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSLEMNKTEEE-TEMI-----EGEVVEIQIERPATGLGSKVG   99 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~i~~~~id~~~~~~~~~~~   99 (174)
                      .++||+||||||||.+|+++|.+++...+|..++.+++++.+.+..+.. .+++     +..++++|||.+....+....
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid~~~~~r~~~~~  203 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTT  203 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC--------
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhhhhccccccCCC
Confidence            3455699999999999999999998778889999999999999887732 2332     777888899988433211100


Q ss_pred             e---eEE---EeccchhhhccccccchhhhcccCCCCCCCHHhh------cce-eeEecCCCCHHHHHHHHHHH
Q psy14616        100 K---LTM---KTTEMETSYDLGAKMIEAIGTAYSSPHGIPIDLL------DRM-VIIPTQPYQDEEIQAILKIR  160 (174)
Q Consensus       100 ~---~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~l~------sR~-~~i~~~~~~~~e~~~il~~~  160 (174)
                      .   -..   ....++......+.++  +++| | +..+++++.      +|| ..+.+..|+.++.++||..+
T Consensus       204 ~~~~~r~v~~lL~e~dg~~~~~~v~v--iaat-N-~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~  273 (321)
T d1w44a_         204 SGGISRGAFDLLSDIGAMAASRGCVV--IASL-N-PTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRT  273 (321)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHTCEE--EEEC-C-CCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEEEC
T ss_pred             CCcchhhhhhhhhhccccccCCCeEE--EEeC-C-CcccccchhhhhhccCcccceeecCCCChHHHHHHHHHh
Confidence            0   000   0112233333344455  6676 5 555666554      677 77888888877766666543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.53  E-value=6.2e-15  Score=107.82  Aligned_cols=52  Identities=23%  Similarity=0.267  Sum_probs=38.1

Q ss_pred             CCchHHHHHHHHHHHH-HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616          1 MVGQLQARRAAGVVLG-MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~-~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++|+|.-++.+..+.. .+++...++.+++|+||||||||++++++++.+...
T Consensus        18 l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          18 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            5787876655554443 334333445799999999999999999999998543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4.5e-15  Score=103.76  Aligned_cols=149  Identities=20%  Similarity=0.201  Sum_probs=83.8

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      +||.++-++.+..++   ...  ...|++|.||||||||++++.+|+.+-.        ...++.++.+.+.+  .+.++
T Consensus        24 ~igRd~Ei~~l~~iL---~r~--~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~   98 (195)
T d1jbka_          24 VIGRDEEIRRTIQVL---QRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE   98 (195)
T ss_dssp             CCSCHHHHHHHHHHH---TSS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHH
T ss_pred             CcCcHHHHHHHHHHH---hcc--CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHH
Confidence            578877775554444   322  2359999999999999999999987621        12355566555442  12233


Q ss_pred             hhh-------hhhhccC--cEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhh
Q psy14616         71 TEE-------ETEMIEG--EVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLL  137 (174)
Q Consensus        71 ~~~-------~~~~~~~--~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~  137 (174)
                      .+.       +.....+  .+++++++.++... ...+.... ...+......+...+  |++++...    ..-+++|.
T Consensus        99 ~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g-~~~g~~d~-~~~Lkp~L~rg~l~~--IgatT~eey~~~~e~d~aL~  174 (195)
T d1jbka_          99 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAG-KADGAMDA-GNMLKPALARGELHC--VGATTLDEYRQYIEKDAALE  174 (195)
T ss_dssp             HHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCC-HHHHHHHHHTTSCCE--EEEECHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCC-CCCCcccH-HHHHHHHHhCCCceE--EecCCHHHHHHHHHcCHHHH
Confidence            331       1111233  23445555553221 11111111 122222333333333  66664333    44699999


Q ss_pred             cceeeEecCCCCHHHHHHHHH
Q psy14616        138 DRMVIIPTQPYQDEEIQAILK  158 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~  158 (174)
                      +||+.|.+.+|+.++...||+
T Consensus       175 rrF~~I~V~Ep~~e~t~~IL~  195 (195)
T d1jbka_         175 RRFQKVFVAEPSVEDTIAILR  195 (195)
T ss_dssp             TTEEEEECCCCCHHHHHTTCC
T ss_pred             hcCCEeecCCCCHHHHHHHhC
Confidence            999999999999999887753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=7.4e-14  Score=102.42  Aligned_cols=152  Identities=20%  Similarity=0.173  Sum_probs=84.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC--------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP--------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~--------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      +||.++-++.+...+   ...  ...|++|.||||||||++++.+|+.+..        ...+..++.+.+.+  .+.++
T Consensus        20 ~igRd~Ei~~l~~iL---~r~--~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~   94 (268)
T d1r6bx2          20 LIGREKELERAIQVL---CRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD   94 (268)
T ss_dssp             CCSCHHHHHHHHHHH---TSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred             ccChHHHHHHHHHHH---hcC--ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchh
Confidence            478777664444433   322  2369999999999999999999987611        12345555555543  23333


Q ss_pred             hhhhh-----hhc-cCcEEEEEEec---cCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC----CCCCHHhh
Q psy14616         71 TEEET-----EMI-EGEVVEIQIER---PATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP----HGIPIDLL  137 (174)
Q Consensus        71 ~~~~~-----~~~-~~~i~~~~id~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~l~  137 (174)
                      .+...     ++. .+.+ ++++|+   ++.......+..... ..+......+...+  |++++...    ..-+++|.
T Consensus        95 ~e~r~~~i~~~~~~~~~i-IlfiDeih~l~~~g~~~g~~~d~a-~~Lkp~L~rg~i~v--IgatT~eey~~~~e~d~al~  170 (268)
T d1r6bx2          95 FEKRFKALLKQLEQDTNS-ILFIDEIHTIIGAGAASGGQVDAA-NLIKPLLSSGKIRV--IGSTTYQEFSNIFEKDRALA  170 (268)
T ss_dssp             HHHHHHHHHHHHSSSSCE-EEEETTTTTTTTSCCSSSCHHHHH-HHHSSCSSSCCCEE--EEEECHHHHHCCCCCTTSSG
T ss_pred             HHHHHHHHHHHhhccCCc-eEEecchHHHhcCCCCCCccccHH-HHhhHHHhCCCCeE--EEeCCHHHHHHHHhhcHHHH
Confidence            33211     111 2222 334444   433221111111111 11122222233333  66654332    34589999


Q ss_pred             cceeeEecCCCCHHHHHHHHHHHh
Q psy14616        138 DRMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       138 sR~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      +||++|++.+|+.++..+||+...
T Consensus       171 rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         171 RRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             GGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhhcccccCCCCHHHHHHHHHHhh
Confidence            999999999999999999998854

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1.4e-13  Score=96.98  Aligned_cols=126  Identities=12%  Similarity=0.075  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC---C-Ceeeeccc-ccch-hhhhhhhhhhhhcc--C-
Q psy14616         10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD---T-PFTSMAGS-EIYS-LEMNKTEEETEMIE--G-   80 (174)
Q Consensus        10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~---~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~--~-   80 (174)
                      +++.+.++++.+..  .+++|+||||+|||++|..+++.+...   . .+..+.+. ..++ .++....+.....+  + 
T Consensus         2 ~~~~l~~~i~~~~~--~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~   79 (198)
T d2gnoa2           2 QLETLKRIIEKSEG--ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYT   79 (198)
T ss_dssp             HHHHHHHHHHTCSS--EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSS
T ss_pred             HHHHHHHHHhcCCC--ceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCC
Confidence            46677788887764  599999999999999999999977321   1 13344332 1121 12222222221211  2 


Q ss_pred             -cEE-EEEEeccCCCCCCccceeEEEeccchhhhcc-ccccchhhhcccCCCCCCCHHhhcceeeEecCCCC
Q psy14616         81 -EVV-EIQIERPATGLGSKVGKLTMKTTEMETSYDL-GAKMIEAIGTAYSSPHGIPIDLLDRMVIIPTQPYQ  149 (174)
Q Consensus        81 -~i~-~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~l~sR~~~i~~~~~~  149 (174)
                       +|+ +++.|++ +.   +.++..++.-+     +- .++.|  +.++ +.+..++|+++|||+.++++++.
T Consensus        80 ~KviIId~ad~l-~~---~aqNaLLK~LE-----EPp~~t~f--iLit-~~~~~ll~TI~SRC~~i~~~~p~  139 (198)
T d2gnoa2          80 RKYVIVHDCERM-TQ---QAANAFLKALE-----EPPEYAVI--VLNT-RRWHYLLPTIKSRVFRVVVNVPK  139 (198)
T ss_dssp             SEEEEETTGGGB-CH---HHHHHTHHHHH-----SCCTTEEE--EEEE-SCGGGSCHHHHTTSEEEECCCCH
T ss_pred             CEEEEEeCcccc-ch---hhhhHHHHHHh-----CCCCCcee--eecc-CChhhCHHHHhcceEEEeCCCch
Confidence             333 3466666 33   33333222111     11 23444  3344 56788999999999999998765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.38  E-value=5.1e-14  Score=107.71  Aligned_cols=53  Identities=19%  Similarity=0.030  Sum_probs=41.0

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccchh
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYSL   66 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~~   66 (174)
                      ..+.+.+..|....+.++|+||||||||++|+++|+.++.  .+..++.++..+.
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~--~~i~in~s~~rs~  193 (362)
T d1svma_         141 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG--KALNVNLPLDRLN  193 (362)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC--EEECCSSCTTTHH
T ss_pred             HHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCC--CEEEEECcchhhH
Confidence            3444445567766789999999999999999999999994  4777776665443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.36  E-value=6.6e-13  Score=100.42  Aligned_cols=44  Identities=30%  Similarity=0.383  Sum_probs=35.1

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |+||+++|+++....  +..   .++|+||.||||||||++|+.++..|
T Consensus         9 I~Gq~~~kral~laa--~~~---~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           9 IVGQEDMKLALLLTA--VDP---GIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             SCSCHHHHHHHHHHH--HCG---GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             ccCcHHHHHHHHHHH--hcc---CCCeEEEECCCCccHHHHHHHHHHhC
Confidence            799999997665433  211   13699999999999999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.35  E-value=3.1e-13  Score=103.98  Aligned_cols=152  Identities=20%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh--CC------CCCeeeecccccch--hhhhh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL--GP------DTPFTSMAGSEIYS--LEMNK   70 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l--~~------~~~~~~~~~~~~~~--~~~~~   70 (174)
                      +||.+.-++.+...+   ..  ....|++|.||||||||+++..+|+.+  |.      ...+..++.+.+..  .+.++
T Consensus        24 ~~gr~~ei~~~~~~L---~r--~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~   98 (387)
T d1qvra2          24 VIGRDEEIRRVIQIL---LR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE   98 (387)
T ss_dssp             CCSCHHHHHHHHHHH---HC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred             CcCcHHHHHHHHHHH---hc--CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchh
Confidence            578776664444433   22  223689999999999999999999876  21      12245556555543  12233


Q ss_pred             hhhh-------hhhccC-c-EEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCC---CCCCHHhhc
Q psy14616         71 TEEE-------TEMIEG-E-VVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSP---HGIPIDLLD  138 (174)
Q Consensus        71 ~~~~-------~~~~~~-~-i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~l~s  138 (174)
                      .+..       .....+ . +++++++.++... ...+..... ..+......+...+  |++++...   ..-+++|.+
T Consensus        99 ~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g-~~~g~~d~a-~~Lkp~L~rg~~~~--I~~tT~~ey~~~e~d~al~r  174 (387)
T d1qvra2          99 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAG-KAEGAVDAG-NMLKPALARGELRL--IGATTLDEYREIEKDPALER  174 (387)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHHTTCCCE--EEEECHHHHHHHTTCTTTCS
T ss_pred             HHHHHHHHHHHhccCCCceEEEeccHHHHhcCC-CCCCcccHH-HHHHHHHhCCCcce--eeecCHHHHHHhcccHHHHH
Confidence            3311       111233 2 2444555553221 122222211 12223333333333  66664222   224899999


Q ss_pred             ceeeEecCCCCHHHHHHHHHHHh
Q psy14616        139 RMVIIPTQPYQDEEIQAILKIRL  161 (174)
Q Consensus       139 R~~~i~~~~~~~~e~~~il~~~l  161 (174)
                      ||+.|.+.+|+.++...||+...
T Consensus       175 rF~~v~v~ep~~~~~~~il~~~~  197 (387)
T d1qvra2         175 RFQPVYVDEPTVEETISILRGLK  197 (387)
T ss_dssp             CCCCEEECCCCHHHHHHHHHHHH
T ss_pred             hcccccCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999744

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.33  E-value=1.5e-12  Score=101.87  Aligned_cols=62  Identities=31%  Similarity=0.544  Sum_probs=48.4

Q ss_pred             CCchHHHHHHHHHHHH----HHHh-----cCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616          1 MVGQLQARRAAGVVLG----MIKE-----GKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~----~~~~-----g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      ||||++||+++.....    .+..     ....+.|+||.||||||||.+|+.||+.++  +||+..+++.+.
T Consensus        16 VvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~--VPFv~~daT~fT   86 (443)
T d1g41a_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKFT   86 (443)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGGC
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhC--CCEEEeecceee
Confidence            7999999999886541    1111     112367999999999999999999999998  889888766554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.30  E-value=4e-12  Score=90.40  Aligned_cols=151  Identities=13%  Similarity=0.120  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC-CCeeeecccccchhhhhhhh-----hhhhh
Q psy14616          4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD-TPFTSMAGSEIYSLEMNKTE-----EETEM   77 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~   77 (174)
                      .+.+...+.   .+++........++++||||+|||+|+.++|+++... .....++.............     +..+.
T Consensus        18 N~~a~~~~~---~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (213)
T d1l8qa2          18 NRLAYEVVK---EALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM   94 (213)
T ss_dssp             THHHHHHHH---HHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHH---HHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHH
Confidence            444443333   3344322223468999999999999999999987322 23344444433321111111     11111


Q ss_pred             c--cCcEEEEEEeccCCCCCCccceeEEEeccchhhhccccccchhhhcccCCCCC---CCHHhhcce---eeEecCCCC
Q psy14616         78 I--EGEVVEIQIERPATGLGSKVGKLTMKTTEMETSYDLGAKMIEAIGTAYSSPHG---IPIDLLDRM---VIIPTQPYQ  149 (174)
Q Consensus        78 ~--~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---l~~~l~sR~---~~i~~~~~~  149 (174)
                      +  .+-++++++|.+....  ..+...|.  .+....+....+   +.|+...+..   +.+.|.||+   .+++++ |+
T Consensus        95 ~~~~dll~iDDi~~i~~~~--~~~~~lf~--lin~~~~~~~~i---iits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~  166 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKE--RTQIEFFH--IFNTLYLLEKQI---ILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LD  166 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCH--HHHHHHHH--HHHHHHHTTCEE---EEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CC
T ss_pred             HhhccchhhhhhhhhcCch--HHHHHHHH--HHHHHhhccceE---EEecCCcchhccccchHHHHHhhCceEEEEC-CC
Confidence            1  2346666777662221  11111111  112222233333   3344345533   569999999   677785 67


Q ss_pred             HHHHHHHHHHHhchhh
Q psy14616        150 DEEIQAILKIRLVKNE  165 (174)
Q Consensus       150 ~~e~~~il~~~l~~~~  165 (174)
                      ++++.++++++...+.
T Consensus       167 d~~~~~iL~~~a~~rg  182 (213)
T d1l8qa2         167 NKTRFKIIKEKLKEFN  182 (213)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcC
Confidence            8889999998875543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.30  E-value=4.4e-13  Score=98.27  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=27.0

Q ss_pred             CCHHhhcce-eeEecCCCCHHHHHHHHHHHhc
Q psy14616        132 IPIDLLDRM-VIIPTQPYQDEEIQAILKIRLV  162 (174)
Q Consensus       132 l~~~l~sR~-~~i~~~~~~~~e~~~il~~~l~  162 (174)
                      .++.+.+|+ ..++|++|+.+++.+|++.++.
T Consensus       192 ~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~  223 (287)
T d1w5sa2         192 KIPQVESQIGFKLHLPAYKSRELYTILEQRAE  223 (287)
T ss_dssp             HCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             hccchhcccceeeeccCCcHHHHHHHHhhhHH
Confidence            457888887 8999999999999999998764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.16  E-value=9.2e-12  Score=90.80  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeeccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI   63 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~   63 (174)
                      |.++||+||||||||++|+++|..++..  +..++.+.+
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~~~--~~~i~~d~~   68 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQGN--VIVIDNDTF   68 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTTC--CEEECTHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhcc--eEEEecHHH
Confidence            5789999999999999999999999854  667776544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.87  E-value=2.5e-09  Score=77.25  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC-CCCeeeecccccchhhhhhhh-------
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIYSLEMNKTE-------   72 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~-------   72 (174)
                      +||+..+.+.+..   .++.--....+++++||+|||||++|+++...... ..+++.+++..+........-       
T Consensus         2 ~v~~S~~~~~~~~---~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~   78 (247)
T d1ny5a2           2 YVFESPKMKEILE---KIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGA   78 (247)
T ss_dssp             CCCCSHHHHHHHH---HHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTS
T ss_pred             eEecCHHHHHHHH---HHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCC
Confidence            5888777744433   23322122358999999999999999999876533 345666666544322111100       


Q ss_pred             ------hhh---hhc-cCcEEEEEEeccCCCCCCccceeEEE---ec---cchhhhcc-ccccchhhhcccCCC------
Q psy14616         73 ------EET---EMI-EGEVVEIQIERPATGLGSKVGKLTMK---TT---EMETSYDL-GAKMIEAIGTAYSSP------  129 (174)
Q Consensus        73 ------~~~---~~~-~~~i~~~~id~~~~~~~~~~~~~~~~---~~---~~~~~~~~-~~~~~~~i~~~~~~~------  129 (174)
                            +..   +.. .|-++++++|.+ +.   ..|...+.   +.   .+...... .+.  +.|++++.+.      
T Consensus        79 ~~~~~~~~~g~l~~a~gGtL~l~~i~~L-~~---~~Q~~L~~~l~~~~~~~~~~~~~~~~~~--RlI~~s~~~l~~l~~~  152 (247)
T d1ny5a2          79 FTGAVSSKEGFFELADGGTLFLDEIGEL-SL---EAQAKLLRVIESGKFYRLGGRKEIEVNV--RILAATNRNIKELVKE  152 (247)
T ss_dssp             STTCCSCBCCHHHHTTTSEEEEESGGGC-CH---HHHHHHHHHHHHSEECCBTCCSBEECCC--EEEEEESSCHHHHHHT
T ss_pred             cCCcccccCCHHHccCCCEEEEeChHhC-CH---HHHHHHHHHHHhCCEEECCCCCceecCe--EEEEecCCCHHHHHHc
Confidence                  000   111 245667788776 32   11111000   00   00000000 111  1245553222      


Q ss_pred             CCCCHHhhcce--eeEecCCCC--HHHHHHHHHHHhch
Q psy14616        130 HGIPIDLLDRM--VIIPTQPYQ--DEEIQAILKIRLVK  163 (174)
Q Consensus       130 ~~l~~~l~sR~--~~i~~~~~~--~~e~~~il~~~l~~  163 (174)
                      ..+.+.|..|+  ..+.+|++.  .+|+..+++..+.+
T Consensus       153 ~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~  190 (247)
T d1ny5a2         153 GKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKK  190 (247)
T ss_dssp             TSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhh
Confidence            34788999998  578899986  57888777776643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=5.8e-09  Score=69.61  Aligned_cols=26  Identities=46%  Similarity=0.645  Sum_probs=24.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++++|.||||+||||+|+.||+.|+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            58999999999999999999999984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=1.1e-08  Score=69.54  Aligned_cols=27  Identities=19%  Similarity=0.422  Sum_probs=25.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+.++|.|||||||||+|++||+.+|.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            479999999999999999999999983

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.53  E-value=2.4e-08  Score=67.19  Aligned_cols=26  Identities=46%  Similarity=0.718  Sum_probs=24.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++|.||||+||||+|+.||+.+|..
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~   31 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLK   31 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            78999999999999999999999843

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=3e-08  Score=66.99  Aligned_cols=33  Identities=39%  Similarity=0.640  Sum_probs=27.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeec
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMA   59 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~   59 (174)
                      ++.++|.||||+||||+|+.+++.+|..  ++.++
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~   36 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVP--KVHFH   36 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEec
Confidence            4678999999999999999999999843  55444

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.49  E-value=4.1e-08  Score=66.06  Aligned_cols=26  Identities=35%  Similarity=0.570  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++++|.|+||+||||+++.||+.||.
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36899999999999999999999984

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.49  E-value=4.5e-08  Score=66.02  Aligned_cols=27  Identities=48%  Similarity=0.742  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+-+++|.||||+||||+|+.||+.++
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            345899999999999999999999986

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4e-08  Score=66.62  Aligned_cols=24  Identities=38%  Similarity=0.728  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++++++|||||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            689999999999999999999887

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=5.4e-08  Score=65.50  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=24.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ++-++|.||||+||||+|+.||+.++.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            367889999999999999999999984

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=6.7e-08  Score=65.15  Aligned_cols=26  Identities=46%  Similarity=0.747  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      .++|.|+||+||||+++.+|+.||..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~   28 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVG   28 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            57788999999999999999999954

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.45  E-value=6e-08  Score=65.71  Aligned_cols=27  Identities=37%  Similarity=0.631  Sum_probs=24.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++++|.|+||+||||+|+.+|+.||..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~   29 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYE   29 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            578899999999999999999999943

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.45  E-value=5.1e-08  Score=65.46  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.++|.||||+||||+|+.||+.++.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~   28 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDN   28 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            46889999999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.43  E-value=6.1e-08  Score=65.47  Aligned_cols=26  Identities=42%  Similarity=0.561  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|+|+||+||||+|+.||+.|+
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45788999999999999999999985

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.42  E-value=1.1e-07  Score=68.40  Aligned_cols=44  Identities=16%  Similarity=0.018  Sum_probs=33.9

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDT   53 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~   53 (174)
                      ++|.++..+.+..       .  .++.++++||+|+|||++++.+++.++...
T Consensus        14 f~GR~~el~~l~~-------~--~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          14 FFDREKEIEKLKG-------L--RAPITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             SCCCHHHHHHHHH-------T--CSSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCChHHHHHHHHh-------c--cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            5788876644432       1  246899999999999999999999987653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.42  E-value=8.5e-08  Score=66.17  Aligned_cols=36  Identities=17%  Similarity=0.554  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      |..+++.||||+||||+|+.||+.+|    +..++.++++
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~g----~~~i~~g~~~   41 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDFG----WVHLSAGDLL   41 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC----CEEEEHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC----CceEchhhHH
Confidence            46788999999999999999999998    3455555554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.41  E-value=5.7e-07  Score=62.17  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616          7 ARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+..+..+..++ .|....+-++|+|||+||||+++.++++.++
T Consensus        36 ~~~Fl~~l~~~l-~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          36 FITFLGALKSFL-KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHHHH-HTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH-cCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            445666777766 4555556788999999999999999999985

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.40  E-value=1e-07  Score=64.15  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=24.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.++|+||||+||||+|+.|++.++..
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~   30 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            578999999999999999999999844

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.37  E-value=9.6e-08  Score=65.69  Aligned_cols=36  Identities=11%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      |-.++|.||||+||||+|+.||+.+|.    ..++.+.+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~----~~is~~~~~   38 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQL----AHISAGDLL   38 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCC----EECCHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCC----cEEehhHHH
Confidence            457999999999999999999999983    344544443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.36  E-value=1.4e-07  Score=64.84  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=29.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +-.++|.||||+||||+|+.||+.+|    +..++.++++.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g----~~~i~~gdllr   39 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFC----VCHLATGDMLR   39 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT----CEEEEHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC----CeEEeHHHHHH
Confidence            34677899999999999999999998    44556555553

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.34  E-value=1.4e-07  Score=64.35  Aligned_cols=25  Identities=48%  Similarity=0.753  Sum_probs=23.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +++|.||||+||||+|+.||+.+|.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~   26 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGI   26 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999999984

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.33  E-value=1.5e-07  Score=64.03  Aligned_cols=34  Identities=26%  Similarity=0.545  Sum_probs=27.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      .+++.||||+||||+|+.||+.+|..    .++.++++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~----~i~~~~ll   35 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIP----HISTGDMF   35 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC----EEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc----eechhHHH
Confidence            48899999999999999999999833    44444444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.7e-07  Score=64.56  Aligned_cols=36  Identities=22%  Similarity=0.551  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      ..+++.||||+||||.|+.||+.+|    +..++.++++.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g----~~~i~~g~llR   37 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG----YTHLSAGELLR   37 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC----CEEEEHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC----CceEcHHHHHH
Confidence            4688999999999999999999998    44555555553

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=2.2e-07  Score=64.17  Aligned_cols=37  Identities=24%  Similarity=0.577  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      +..++|.||||+||||+|+.||+.+|    +..++.++++.
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g----~~~is~g~llr   44 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYG----YTHLSTGDLLR   44 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTC----CEEEEHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC----CeeEeccHHHH
Confidence            35788999999999999999999998    44566666554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=1.7e-07  Score=64.71  Aligned_cols=36  Identities=22%  Similarity=0.504  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      ..++|.||||+||||+|+.||+.+|    +..++.++++.
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g----~~~is~gdl~R   44 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYS----FVHLSAGDLLR   44 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----CEEEEHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC----CeEEehhHHHH
Confidence            3678899999999999999999998    34555555543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.30  E-value=5.1e-07  Score=61.77  Aligned_cols=45  Identities=33%  Similarity=0.404  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHhcCcCCceEE-EEcCCCCcHHHHHHHHHHHhCC
Q psy14616          7 ARRAAGVVLGMIKEGKIAGRAIL-LAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus         7 ~~~~l~~~~~~~~~g~~~~~~~l-l~GppG~GKT~la~~la~~l~~   51 (174)
                      +.+.+..++..+.+....++-++ +.||+|+||||+|+.|++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_           3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45567777877777665554444 8999999999999999998753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.30  E-value=2.2e-07  Score=64.07  Aligned_cols=36  Identities=14%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      -.++|.||||+||||+|+.||+.+|    +..++.++++.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g----~~~is~gdllr   42 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSGDLLR   42 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC----CeEEcHHHHHH
Confidence            4788899999999999999999998    44566666554

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-07  Score=64.10  Aligned_cols=28  Identities=36%  Similarity=0.572  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..++|+|+||+||||+|+.||+.++..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~   46 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCH   46 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3467799999999999999999998643

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.4e-07  Score=64.80  Aligned_cols=35  Identities=29%  Similarity=0.566  Sum_probs=30.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .+.+.||||+||+|.|+.||+.+|    +..++.|+++.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g----l~~iStGdLlR   39 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ----WHLLDSGAIYR   39 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT----CEEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CcEECHHHHHH
Confidence            677889999999999999999998    55778777765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.28  E-value=2.3e-07  Score=63.39  Aligned_cols=34  Identities=26%  Similarity=0.573  Sum_probs=27.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      .++|.||||+||||+|+.||+.+|.    ..++.++++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~----~~is~gdll   35 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGT----PHISTGDMF   35 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC----CEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC----ceeeHHHHH
Confidence            4789999999999999999999983    344544444

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.24  E-value=3e-07  Score=64.52  Aligned_cols=35  Identities=29%  Similarity=0.569  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccch
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIYS   65 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~~   65 (174)
                      .+.+.||||+||||.|+.||+.+|    +..++.|.++.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg----~~~istGdl~R   39 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG----FTYLDTGAMYR   39 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC----CEEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CcEECHHHHHH
Confidence            345779999999999999999998    45677777665

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=4.2e-07  Score=61.94  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      .++|.||||+||||+|+.||+.+|    +..++.++++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g----~~~i~~~d~~   37 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH----AAHLATGDML   37 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC----CEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CceEeccccc
Confidence            578889999999999999999998    3345544444

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.7e-07  Score=62.04  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIY   64 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~~~   64 (174)
                      .++|.||||+||||.|+.||+.+|.    ..++.++++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~~~ll   35 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGI----PQISTGDML   35 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC----CEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC----ceechhhHh
Confidence            5789999999999999999999983    344444444

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.18  E-value=5.2e-07  Score=59.37  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.++++||||+||||+|+.+++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            467899999999999999987765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.17  E-value=5.7e-07  Score=60.72  Aligned_cols=25  Identities=36%  Similarity=0.795  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+++.||||+||||+++.++..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            5899999999999999999998853

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.11  E-value=8.3e-07  Score=60.01  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=23.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +.+++.||||+||||+++.|++.|+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999998543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=9.4e-07  Score=61.16  Aligned_cols=26  Identities=35%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      |-.++++|.||+||||+|+.||+.++
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999999885

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=9.4e-07  Score=59.93  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++++|+||+||||+|+.++..++
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~~~   39 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVSAG   39 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGGGT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56889999999999999999988776

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.5e-06  Score=57.91  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.++|+||+|||||++.+++++
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999987

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.94  E-value=7.1e-06  Score=59.59  Aligned_cols=47  Identities=17%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             CCchHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616          1 MVGQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus         1 iiG~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++|.+.-++.+.......  .......+.++|+.|+|||++|+.+++..
T Consensus        22 ~~gR~~~~~~i~~~L~~~--~~~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          22 CYIREYHVDRVIKKLDEM--CDLDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SCCCHHHHHHHHHHHHHH--TTSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eeCcHHHHHHHHHHHHhc--cCCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            467666664444333222  22233577899999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.9e-06  Score=58.43  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=27.9

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..|..++..++++||||+|||+++..+|...
T Consensus        15 ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          15 LLQGGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             HTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             hhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            335677778899999999999999999998765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=2.4e-06  Score=60.20  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=26.9

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .++..|..++..++|+||||+|||+++..+|..
T Consensus        25 ~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          25 TLLGGGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             HHHTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             hhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            334556777789999999999999999998754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.92  E-value=3.3e-06  Score=59.88  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++..|..+++.++++||||+|||+++..+|...
T Consensus        27 ~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          27 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3445566677899999999999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.92  E-value=3.1e-06  Score=57.28  Aligned_cols=27  Identities=22%  Similarity=0.493  Sum_probs=23.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +-++|.|+||+||||+++.||+.|+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            357899999999999999999999543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=4.5e-06  Score=57.31  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .++|.||+|+||||+++.|++..+.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            5899999999999999999998753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=5.2e-06  Score=56.71  Aligned_cols=26  Identities=31%  Similarity=0.524  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.++|+||+|+||||+++.|++....
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCc
Confidence            46899999999999999999998753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.82  E-value=5.7e-06  Score=58.44  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..|..++..++++||||+|||+++..+|...
T Consensus        18 ~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          18 MCGGGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             HTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             hhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345567777899999999999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=7.9e-06  Score=57.78  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++-.|..++..++++||||+|||++|..+|...
T Consensus        29 ~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          29 LLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             HTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             hhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            334566667789999999999999999998743

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=1.1e-05  Score=56.42  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|+.++|.||+|+||||++-.||..+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678899999999998877777655

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=9e-06  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++.++|.||+|+||||+++.|.+...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46789999999999999999998763

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.74  E-value=9.4e-06  Score=56.54  Aligned_cols=25  Identities=36%  Similarity=0.630  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.|+|.||+||||+|+.|++.+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4588899999999999999999876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.73  E-value=1e-05  Score=56.40  Aligned_cols=25  Identities=40%  Similarity=0.430  Sum_probs=16.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++|.||+|+||||++-.||..+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678899999999999877777665

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1.2e-05  Score=56.02  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..++|.||+|+||||++-.||..+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3678899999999999877788766

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.70  E-value=1.3e-05  Score=55.78  Aligned_cols=25  Identities=36%  Similarity=0.597  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.++|.||+|+||||++-.||+.+
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999998877778765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.69  E-value=1.1e-05  Score=56.75  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +++..|..++..++++||||+|||+++..+|..+
T Consensus        25 ~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          25 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3344556677899999999999999999999765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=7.1e-05  Score=49.58  Aligned_cols=29  Identities=31%  Similarity=0.591  Sum_probs=25.6

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      ++..++|.|+=|+|||++++.+++.+|..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            44578899999999999999999999864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.66  E-value=1.5e-05  Score=55.46  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.++|.||+|+||||++-.||..+
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999888888766

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=4.3e-05  Score=56.61  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCCCCeeee
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPDTPFTSM   58 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~~~~~~~   58 (174)
                      ..+..+++.    +.+++++||+|+||||+.++++..+......+.+
T Consensus       157 ~~l~~~v~~----~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         157 SAIKDGIAI----GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHHHHHHH----TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHHHHHHHh----CCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            334444444    3589999999999999999999988655444444

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.60  E-value=1.2e-05  Score=56.09  Aligned_cols=31  Identities=32%  Similarity=0.541  Sum_probs=25.4

Q ss_pred             HHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616         17 MIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        17 ~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      .+..|..++..++++|+||+|||+++..+|.
T Consensus        18 ~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          18 ISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             HTTSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3455777788999999999999999987664

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.51  E-value=3.7e-05  Score=51.10  Aligned_cols=24  Identities=21%  Similarity=0.219  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+-+.|++|+|||||+..++.+|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356699999999999999999887

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=3.7e-05  Score=53.30  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..++|+||+|+||||+.+.|.+...
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35788999999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=4e-05  Score=53.05  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .+-+.||+|+||||+|+.|++.++.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhch
Confidence            4558999999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4.5e-05  Score=51.63  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.++|.||+|+||||+++.|.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999998765

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=4.8e-05  Score=54.50  Aligned_cols=29  Identities=31%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |..++...+++|+||+|||+++..+|..+
T Consensus        25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          25 NMVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55566788899999999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.33  E-value=0.0002  Score=51.48  Aligned_cols=41  Identities=34%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+...+..+.....-++|+|||++|||+++.++++.+|.
T Consensus        90 ~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_          90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            34444444333333346678999999999999999999963

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.30  E-value=0.00013  Score=52.29  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=25.5

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .|..++..+++.|+||+|||+++..+|..
T Consensus        30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            57777889999999999999999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00015  Score=54.31  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=17.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      +..+++||||||||+++..+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHH
Confidence            5788999999999988755443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.23  E-value=0.0001  Score=48.05  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.|+||||||+|...+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00013  Score=50.33  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++-++|.|++|+||||+++.|++.|
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999987

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.20  E-value=0.00019  Score=50.14  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+++.||+|+|||||...+.+.+.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            467999999999999999998774

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00038  Score=50.43  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -+-+.|++|+||||++..+...|
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            44489999999999999887765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00052  Score=50.69  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+=++||||+|||||...+++.+
T Consensus        56 ~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          56 RLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            56689999999999999998766

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.18  E-value=0.00012  Score=49.33  Aligned_cols=24  Identities=38%  Similarity=0.711  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.++||.|++|+|||++|..+.+.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            579999999999999999988875

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00014  Score=50.32  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .-+.|.|+.|+||||.++.|++.|
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            467788999999999999999988

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.16  E-value=0.00067  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+=+.||||+||||+...+++.+
T Consensus        53 ~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          53 RVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEeeeCCCCCCHHHHHHHHHHHH
Confidence            45589999999999999999765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00017  Score=51.80  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=24.4

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|...++...|+||||+|||+++..++...
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            344556788899999999999999887654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=8.3e-05  Score=50.58  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=23.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      --+.+.|+.|+||||+++.|++.++.
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46779999999999999999999863

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.06  E-value=0.00013  Score=49.15  Aligned_cols=24  Identities=38%  Similarity=0.699  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.++||.||+|.|||++|..+.+.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            579999999999999999888754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00026  Score=49.07  Aligned_cols=29  Identities=38%  Similarity=0.515  Sum_probs=25.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGPDT   53 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~~~   53 (174)
                      +.-+.|.|+.|+||||+++.|++.|....
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            45788999999999999999999996543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.00016  Score=49.82  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||.|+||||+.+.++..+.
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccc
Confidence            56788999999999999999987663

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.04  E-value=0.00019  Score=48.03  Aligned_cols=24  Identities=33%  Similarity=0.677  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.++||.|++|.|||++|-.+.+.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            579999999999999999888765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0014  Score=47.86  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      -.+-+.|++|+||||+|+.|+..|.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4555899999999999999999885

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00024  Score=49.77  Aligned_cols=27  Identities=19%  Similarity=0.285  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      |+-+++-|+-|+||||+++.|++.++.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            467889999999999999999999864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00023  Score=48.76  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      +++++.|+||+|||+|...+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.99  E-value=0.00024  Score=46.43  Aligned_cols=21  Identities=43%  Similarity=0.593  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|+||||||+|.+.+..
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00023  Score=46.22  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -++|.|+||+|||+|...+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00029  Score=49.57  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.-+.|.||+|+||||+.+.++..+.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            45788999999999999999987654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.00027  Score=48.27  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+.|+.|+||||+++.|++.|
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999987

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.94  E-value=0.00025  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=16.7

Q ss_pred             ceEEEEcCCCCcHHHH-HHHHHH
Q psy14616         26 RAILLAGQPGTGKTAI-AMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~l-a~~la~   47 (174)
                      .++++.|+||||||++ +..++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHH
Confidence            5788999999999975 444444

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00027  Score=47.01  Aligned_cols=21  Identities=19%  Similarity=0.581  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|+||||||+++..+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999998875

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.92  E-value=0.00023  Score=50.01  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+-+.||+|+||||+.+.++....
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCC
Confidence            56788999999999999999987653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.90  E-value=0.00032  Score=49.57  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+-+.||+|+||||+++.++..+.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            45788999999999999999997654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.88  E-value=0.00028  Score=46.39  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|+||+|||+|...+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            689999999999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0003  Score=49.78  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+.+.||+|+||||+++.++..+..
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            568899999999999999999987643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.88  E-value=0.00021  Score=47.53  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..++|.|+||+|||||...+..
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999988753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.88  E-value=0.00035  Score=49.80  Aligned_cols=26  Identities=31%  Similarity=0.612  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..+.
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccC
Confidence            56889999999999999999987664

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.87  E-value=0.00036  Score=49.26  Aligned_cols=27  Identities=33%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..+-+.||+|+||||+.+.++..+..
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            457889999999999999999977643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.86  E-value=0.0003  Score=49.65  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      -+.|.||+|+||||+.+.++..+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            455889999999999999997764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00035  Score=49.72  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         24 AGRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++..+.+.||+|+||||+++.++..+.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            356889999999999999999987664

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00033  Score=46.10  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|+||||||+|+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00036  Score=46.00  Aligned_cols=22  Identities=18%  Similarity=0.461  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      -+++.|++|||||++++.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.82  E-value=0.00038  Score=49.26  Aligned_cols=26  Identities=31%  Similarity=0.372  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..+.
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            56788999999999999999987663

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.0007  Score=47.25  Aligned_cols=24  Identities=25%  Similarity=0.525  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ++..+|.|++|||||||..+|.-.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCCHHHHHHhhcch
Confidence            468899999999999999998643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.81  E-value=0.00029  Score=49.44  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +.-+.+.||+|+||||+.+.++-.+..
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            457889999999999999999976643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0004  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      -++|.|++|||||+|...+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=0.0004  Score=46.00  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      -++|.|++|+|||+|...+...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4889999999999999998763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.79  E-value=0.00099  Score=47.37  Aligned_cols=39  Identities=23%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616          9 RAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus         9 ~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+..+...+++.....-+++|.|.||+|||++...+..
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhC
Confidence            334445555555444456999999999999999999863

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00038  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||+|++.+..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999988763

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00033  Score=49.51  Aligned_cols=26  Identities=19%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +.-+-+.||+|+||||+++.++-.+.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            45778999999999999999987553

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.78  E-value=0.00045  Score=45.44  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|++|+|||+|...+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.77  E-value=0.00041  Score=45.95  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..++|.|.||+|||+|...+..
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00041  Score=45.95  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      -++|.|++|||||+|.+.+...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998863

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00048  Score=49.81  Aligned_cols=25  Identities=32%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+.+.||+|+||||+++.++..+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            5688899999999999999999766

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0005  Score=45.47  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||+|...+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998886

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.00047  Score=45.63  Aligned_cols=21  Identities=29%  Similarity=0.657  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+.+.|+||+|||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999873

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.71  E-value=0.00055  Score=49.76  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=18.4

Q ss_pred             CceEEEEcCCCCcHHHH-HHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAI-AMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~l-a~~la~~l   49 (174)
                      ..++++.|+||||||++ +..+++.+
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHHHHHH
Confidence            34788999999999975 44455544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00051  Score=45.46  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|.+|||||+|+..+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999999885

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00054  Score=45.57  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|||||+|+..+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00057  Score=45.07  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -++|.|.+|||||+|+..+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0002  Score=49.98  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +-+.+.|+.|+||||+++.|++.|.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999884

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00056  Score=45.30  Aligned_cols=21  Identities=29%  Similarity=0.619  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -++|.|.+|||||+|.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00061  Score=46.31  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .++|.|+||+|||||..+|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.66  E-value=0.0003  Score=49.75  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+.+.++....
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            56888999999999999999997653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00059  Score=44.91  Aligned_cols=21  Identities=33%  Similarity=0.684  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|+||+|||+++..+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00061  Score=45.15  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|||||+|...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            478999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00058  Score=45.14  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|.+|||||+|...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00062  Score=44.81  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||++...+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00062  Score=45.14  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -++|.|.+|||||+++..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00067  Score=45.02  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|.+|||||+|+..+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.0007  Score=44.39  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|+|||+|+..+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00067  Score=44.67  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      .-+++.|++|||||+|...+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4688999999999999998875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00069  Score=44.77  Aligned_cols=21  Identities=29%  Similarity=0.661  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||++++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.57  E-value=0.00058  Score=45.24  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      -.+++.|+||+|||++...+.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            479999999999999998774

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.57  E-value=0.0017  Score=49.22  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ...+|++||+|+||||+..++.+.++.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            347788999999999999999988854

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0014  Score=46.97  Aligned_cols=25  Identities=32%  Similarity=0.487  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++-++++|.-||||||++-++|..+
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHH
Confidence            5788899999999999999998877

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0007  Score=45.05  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .-+++.|++|||||+|...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35789999999999999888763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00069  Score=44.76  Aligned_cols=21  Identities=43%  Similarity=0.703  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|+|||+|++.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            378999999999999988764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00074  Score=43.98  Aligned_cols=21  Identities=33%  Similarity=0.700  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|+||+|||||..++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999998873

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.55  E-value=0.0006  Score=45.43  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|+||+|||||..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.55  E-value=0.00076  Score=45.17  Aligned_cols=21  Identities=24%  Similarity=0.552  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|.+|||||+|+..+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.53  E-value=0.00042  Score=49.38  Aligned_cols=26  Identities=19%  Similarity=0.422  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+.+.||+|+||||+++.++..+.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            56889999999999999999887654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00067  Score=45.02  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .++|.|+||||||+++..+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00079  Score=44.34  Aligned_cols=22  Identities=27%  Similarity=0.600  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+++.|.+|||||+|.+.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999988753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00078  Score=44.14  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|.+|||||++++.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.0011  Score=47.46  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             hcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         20 EGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        20 ~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .|...++-..|+||||+|||++|..++...
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            355557788899999999999987776543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.50  E-value=0.00086  Score=44.15  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|.+|||||+|.+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.00073  Score=48.20  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +..+-+.||+|+||||++++++-.+
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4578899999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.48  E-value=0.0009  Score=45.17  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+.|.|+||+|||||..+|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            689999999999999999973

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.47  E-value=0.0012  Score=46.01  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=25.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCCCeeeecccc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE   62 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~~~~~~~~~~   62 (174)
                      -+-|+|+.|+||||+|..|+..+|    +..++.++
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g----~~~i~~aD   34 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYS----AVKYQLAG   34 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSC----EEECCTTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC----CeEEcccH
Confidence            467999999999999999999887    44455333

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0009  Score=44.52  Aligned_cols=21  Identities=29%  Similarity=0.702  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|+|||++...+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.45  E-value=0.00094  Score=44.09  Aligned_cols=22  Identities=23%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      .-+++.|.+|||||+++..+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00092  Score=44.33  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -++|.|.+|||||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.43  E-value=0.00057  Score=45.34  Aligned_cols=21  Identities=38%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      -.+++.|+||+|||++.+.+.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            479999999999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00098  Score=44.59  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      -+++.|.+|||||++...+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999988763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.0011  Score=44.65  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      -+-++|++|+||||+|+.+. ..|
T Consensus         5 IIgitG~~gSGKstva~~l~-~~g   27 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR-SWG   27 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH-HTT
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCC
Confidence            34488999999999999985 466

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.40  E-value=0.00091  Score=47.17  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+-|.||+|+||||+.++++-.+.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            55788999999999999999997664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.001  Score=44.42  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -++|.|.+|||||+++..+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.001  Score=44.95  Aligned_cols=21  Identities=29%  Similarity=0.684  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||+|+..+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            478999999999999998875

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.38  E-value=0.0013  Score=47.20  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             cCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         21 GKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        21 g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      |...++-..++||||+|||++|..++...
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHH
Confidence            33446677899999999999999887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0011  Score=43.67  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||+|...+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=44.74  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|++|||||+|...+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.35  E-value=0.00061  Score=45.51  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=19.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la   46 (174)
                      .-.+++.|+||+|||++.+.+.
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            3589999999999999998764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0026  Score=45.24  Aligned_cols=24  Identities=42%  Similarity=0.635  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.++++|.-||||||++-.||..+
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            477789999999999988888766

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0012  Score=44.30  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|.+|||||+|.+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999998875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0014  Score=44.74  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             ceEEEEcC-CCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQ-PGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~Gp-pG~GKT~la~~la~~l   49 (174)
                      +.++++|- +|||||+++-.||+.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            47889999 5999999999999887

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0013  Score=43.37  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+++.|.+|||||++...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3578999999999999998876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.0012  Score=46.55  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+-|.||+|+||||+.++++..+.
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45677999999999999999997664

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.24  E-value=0.0013  Score=43.65  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+.|.|.||+|||++...+..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.20  E-value=0.0013  Score=46.68  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +..+-|.||+|+||||++++++-.+.
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            45778999999999999999986653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.18  E-value=0.0018  Score=47.74  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCCCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGPDT   53 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~~~   53 (174)
                      -|.|-|+-|+||||+++.|++.++...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC
Confidence            577899999999999999999986443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00087  Score=44.36  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+++.|++|||||+|...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999887754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0008  Score=44.60  Aligned_cols=21  Identities=33%  Similarity=0.702  Sum_probs=8.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|.+|||||+|...+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0055  Score=42.79  Aligned_cols=35  Identities=31%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ..+.+.+.++..  .+.||+|.+|+|||.++...+..
T Consensus        65 ~~i~~~~~~~~~--~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          65 NAVLSDMCQPLA--MDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HHHHHHHHSSSC--CEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHhccCc--cCeEEEcCCCCCcHHHHHHHHHH
Confidence            444544555543  48999999999999987766543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.13  E-value=0.0021  Score=43.69  Aligned_cols=25  Identities=32%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             CceEEEEcCCCCcHHHHHH-HHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAM-GLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~-~la~~l   49 (174)
                      ++++++.+|+|+|||+++. .+...+
T Consensus        40 ~~~~il~apTGsGKT~~a~l~i~~~~   65 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEMAMVREA   65 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHHh
Confidence            4689999999999998864 344444

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.13  E-value=0.00085  Score=42.31  Aligned_cols=19  Identities=37%  Similarity=0.544  Sum_probs=16.3

Q ss_pred             CceEEEEcCCCCcHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~   43 (174)
                      +++.+|++|+|+|||..+-
T Consensus         7 ~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHH
T ss_pred             CCcEEEEcCCCCChhHHHH
Confidence            4689999999999997664

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0016  Score=42.97  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+.|.|.||+|||||..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999974

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.06  E-value=0.0007  Score=47.44  Aligned_cols=25  Identities=28%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++..+|.|++|+|||||..+|.-..
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            5678899999999999999986443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.0016  Score=45.63  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +..+-+.||+|+||||+.+.++..
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            567889999999999999999863

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.00058  Score=45.76  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..+|+||.|+|||++..++...|+.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4568899999999999999988853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0023  Score=43.76  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      -+-++|++|+||||+++.+. .+|
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G   27 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLG   27 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTT
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCC
Confidence            34589999999999999886 566

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0021  Score=43.15  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCcHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGL   45 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~l   45 (174)
                      -+++.|.+|+|||++...+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0012  Score=43.65  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la   46 (174)
                      ..+.|.|+|++|||+|..++.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            479999999999999998874

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.85  E-value=0.0062  Score=41.46  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +..++..|+|+|||.++-.++..++..
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhcCc
Confidence            356788999999999999998888654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.84  E-value=0.0015  Score=47.15  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .+-++|++|+||||+++.+++.++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            566899999999999999998774

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.0029  Score=42.08  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+.+.|.+|+|||||..++..
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3688999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0029  Score=47.86  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+|+++.|++|+|||++++.+...+
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHH
Confidence            3689999999999999887666443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.80  E-value=0.0019  Score=43.08  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+-|.|+|++|||||..+|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=95.77  E-value=0.0022  Score=40.59  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +..++.+|+|+|||+++-.++...+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            57899999999999988666665554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.76  E-value=0.0018  Score=43.02  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      .+.|.|.||+||||+...|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999863

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.0009  Score=43.51  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+.|.|.||+|||||..++...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999754

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.69  E-value=0.004  Score=41.86  Aligned_cols=22  Identities=41%  Similarity=0.475  Sum_probs=18.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ++.++++|+|+|||.++..++.
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHH
Confidence            4789999999999987666654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.004  Score=41.32  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      -.+++.|++|+|||++...+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999988653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0044  Score=44.68  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++-.++.|++|||||+++..+++..
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999998755

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0021  Score=46.29  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +--+|+||.|+|||++..|++..+|.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            35689999999999999999887753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.65  E-value=0.0031  Score=43.52  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..++|.|++|+|||++.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999998854

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0037  Score=41.71  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+++.|.+|+|||++.+.+...-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999987643

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.58  E-value=0.01  Score=42.19  Aligned_cols=34  Identities=26%  Similarity=0.217  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHH
Q psy14616         12 GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        12 ~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+..-+.++..  .+-||+|..|+|||.+|-..+.
T Consensus        93 ~ei~~d~~~~~~--m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          93 QEIRNDMISEKP--MNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             HHHHHHHHSSSC--CCCEEECCSSSSHHHHHHHHHH
T ss_pred             HHHHHHhhccCc--ceeeeeccccccccHHHHHHHH
Confidence            444444455443  4889999999999998776654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.0037  Score=42.55  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      +-++|++|+||||+|+.+. .+|.
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~   27 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGV   27 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTC
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCC
Confidence            4479999999999999886 4663

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0052  Score=46.37  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCcHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLA   46 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la   46 (174)
                      +-++.+.|.||+||||+..+|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999986

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.44  E-value=0.0054  Score=42.59  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=19.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ++.+++.+|+|+|||+++...+..
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHH
Confidence            568999999999999876655543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0061  Score=45.46  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      ..-+++||.|+|||++..|++..||.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34578999999999999999988864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.17  E-value=0.0041  Score=45.76  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      -|.|-|+-|+||||+++.+++.++.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999998864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.0072  Score=40.06  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .++|.|..|||||++.+.+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999987643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.82  E-value=0.01  Score=41.84  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +.+.++|.=||||||+|-.+|..|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            356789999999999999999877

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0071  Score=41.81  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..+++|.-|+||||+.+.+.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            68899999999999999988753

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.69  E-value=0.0078  Score=43.83  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=16.3

Q ss_pred             CceEEEEcCCCCcHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~   43 (174)
                      +...||+|.+|||||||..
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            3578999999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.63  E-value=0.0052  Score=45.13  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhCC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALGP   51 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~~   51 (174)
                      .|.|-|+-|+||||+++.|++.++.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4678899999999999999988753

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.61  E-value=0.013  Score=41.85  Aligned_cols=25  Identities=40%  Similarity=0.565  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++-+++.|++|+|||+++..+++..
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.42  E-value=0.015  Score=41.41  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      +-+.++|.=||||||++-.+|..|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~L   26 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAAL   26 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            456679999999999888888766

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.011  Score=42.97  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=16.2

Q ss_pred             CceEEEEcCCCCcHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~   43 (174)
                      +...+|.|-+|||||||..
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3578999999999999773

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.28  E-value=0.017  Score=41.08  Aligned_cols=25  Identities=36%  Similarity=0.644  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +|+.+.|+.|.|||||+.++....|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            5899999999999999999977664

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.018  Score=40.07  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.++++||...|||++.|.+|-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            57889999999999999998854

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.09  E-value=0.02  Score=40.90  Aligned_cols=25  Identities=28%  Similarity=0.294  Sum_probs=22.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +|+-+.|..|.|||||+.++....|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            5999999999999999999987765

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.08  E-value=0.019  Score=39.22  Aligned_cols=23  Identities=48%  Similarity=0.702  Sum_probs=19.0

Q ss_pred             eEEE-EcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILL-AGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll-~GppG~GKT~la~~la~~l   49 (174)
                      .+.+ .|..|+||||+|..+|..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            3444 5999999999999999877

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.86  E-value=0.016  Score=42.12  Aligned_cols=19  Identities=37%  Similarity=0.665  Sum_probs=16.4

Q ss_pred             CceEEEEcCCCCcHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~   43 (174)
                      +...||.|-+|||||||..
T Consensus        14 gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CCEEEEECCTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3578999999999999983

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.77  E-value=0.025  Score=38.54  Aligned_cols=24  Identities=46%  Similarity=0.703  Sum_probs=19.5

Q ss_pred             ceEEEE-cCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLA-GQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~-GppG~GKT~la~~la~~l   49 (174)
                      +.+.++ +..||||||++-.+|..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            345555 789999999999999877

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.62  E-value=0.024  Score=37.33  Aligned_cols=21  Identities=24%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      ++-+.|.|++|||||..+|..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            678999999999999999974

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.031  Score=37.55  Aligned_cols=23  Identities=30%  Similarity=0.255  Sum_probs=18.1

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~   47 (174)
                      ++++++.-|+|+|||.++.....
T Consensus        40 g~~vlv~apTGsGKT~~~~~~~~   62 (206)
T d1oywa2          40 GRDCLVVMPTGGGKSLCYQIPAL   62 (206)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhh
Confidence            46899999999999987654443

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=93.23  E-value=0.035  Score=41.11  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=25.9

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHH
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIA   42 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la   42 (174)
                      .|+++-+.+..+...+-+|...  .++-||++|+|||++.
T Consensus        55 ~q~~vy~~v~~lv~~~l~G~n~--~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          55 TQDDVFEDTKYLVQSAVDGYNV--CIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             CHHHHHHTTTHHHHHHHTTCEE--EEEEECSTTSSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCce--eeeccccCCCCccccc
Confidence            3556655555555555566543  7777999999999874

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.09  E-value=0.06  Score=43.23  Aligned_cols=25  Identities=28%  Similarity=0.597  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.+++.|.+|.|||+.++.+-+.|
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999988776

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.83  E-value=0.074  Score=42.87  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .++..++  .+.+++.|.+|.|||+.++.+-+.|
T Consensus       118 ~m~~~~~--nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         118 SMLDDRQ--NQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HHHHHTC--CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhCC--CceEEEeCCCCCCHHHHHHHHHHHH
Confidence            3334443  3799999999999999999887766

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.78  E-value=0.036  Score=39.68  Aligned_cols=24  Identities=38%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~   48 (174)
                      ++-+++.|++|+|||+++..++..
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHHh
Confidence            678899999999999998877754

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.67  E-value=0.073  Score=42.88  Aligned_cols=25  Identities=36%  Similarity=0.518  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.+++.|.+|.|||+.++.+-+.|
T Consensus        91 ~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          91 DQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999888776

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=92.66  E-value=0.053  Score=39.69  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=25.0

Q ss_pred             chHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHH
Q psy14616          3 GQLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus         3 G~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~   43 (174)
                      .|+++-+.+..+...+-+|..  -.++-||.+|+|||++..
T Consensus        63 ~q~~vy~~v~~~v~~~l~G~n--~~i~aYGqtgSGKT~T~~  101 (342)
T d1f9va_          63 TNVDVFKEVGQLVQSSLDGYN--VCIFAYGQTGSGKTFTML  101 (342)
T ss_dssp             CHHHHHHHHHHHHGGGGGTCC--EEEEEECCTTSSHHHHHH
T ss_pred             CHHHHHHHhhhhhcchhcccc--cceeeeeccCCccccccc
Confidence            366666555444444444543  266679999999998764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.54  E-value=0.077  Score=43.31  Aligned_cols=25  Identities=32%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.+++.|.+|.|||+.++.+-+.|
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4799999999999999988887766

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.37  E-value=0.054  Score=40.11  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHH
Q psy14616          4 QLQARRAAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIA   42 (174)
Q Consensus         4 ~~~~~~~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la   42 (174)
                      |+++=+.+.-+...+-+|...  .++-||+.|+|||++.
T Consensus       106 Q~~Vy~~v~plv~~vl~G~n~--ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         106 QSDIFEMVSPLIQSALDGYNI--CIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             HHHHHTTTHHHHHHHHTTCEE--EEEEECSTTSSHHHHH
T ss_pred             ccchHHHHHHHHHHHhcccce--eEEeeccCCCccceEe
Confidence            555554444455555556543  7778999999999764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.31  E-value=0.051  Score=37.41  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      +.++++||...|||++.|.++-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            35889999999999999988754

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.31  E-value=0.087  Score=42.94  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=25.2

Q ss_pred             HHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         16 GMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        16 ~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+...++  .+.+++.|.+|.|||..++.+-+.|
T Consensus       114 ~m~~~~~--nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         114 NMVTDRE--NQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             HHHHHTS--EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhCC--CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3444443  3799999999999999988887766

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.97  E-value=0.063  Score=38.16  Aligned_cols=26  Identities=35%  Similarity=0.411  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++.+++.|++|+|||+++..++....
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~~~   92 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILNQQ   92 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred             CceEeeccCCCCChHHHHHHHHhhhc
Confidence            57889999999999999987665543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.93  E-value=0.033  Score=39.50  Aligned_cols=17  Identities=35%  Similarity=0.593  Sum_probs=14.9

Q ss_pred             CCceEEEEcCCCCcHHH
Q psy14616         24 AGRAILLAGQPGTGKTA   40 (174)
Q Consensus        24 ~~~~~ll~GppG~GKT~   40 (174)
                      .++..++.+|+|+|||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            35789999999999995

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.87  E-value=0.11  Score=41.88  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         25 GRAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ++.+++.|.+|.|||+.++.+-+.|
T Consensus        94 ~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          94 NQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999887766

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.86  E-value=0.053  Score=36.63  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++.+.|.++.|||||+.+|...+|
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhh
Confidence            788999999999999999976654

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.80  E-value=0.11  Score=37.71  Aligned_cols=38  Identities=18%  Similarity=0.388  Sum_probs=24.3

Q ss_pred             hHHHHHHH-HH-HHHHHHhcCcCCceEEEEcCCCCcHHHHHH
Q psy14616          4 QLQARRAA-GV-VLGMIKEGKIAGRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus         4 ~~~~~~~l-~~-~~~~~~~g~~~~~~~ll~GppG~GKT~la~   43 (174)
                      |+++-+.. .- +.+.+.+|...  .++-||.+|+|||++..
T Consensus        64 q~~vy~~~~~plv~~~~~~G~n~--~i~aYGqTGSGKTyTm~  103 (330)
T d1ry6a_          64 NFTVYENTIKPLIIDLYENGCVC--SCFAYGQTGSGKTYTML  103 (330)
T ss_dssp             HHHHHHHHTHHHHHHHHHHCCEE--EEEEECCTTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCe--EEEeeeccccccceeee
Confidence            55555432 22 33445556543  67789999999998864

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.75  E-value=0.058  Score=36.32  Aligned_cols=16  Identities=63%  Similarity=0.877  Sum_probs=14.3

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      +++++..+|+|+|||.
T Consensus        38 g~dvi~~a~tGsGKTl   53 (206)
T d1s2ma1          38 GRDILARAKNGTGKTA   53 (206)
T ss_dssp             TCCEEEECCTTSCHHH
T ss_pred             CCCEEEecCCcchhhh
Confidence            4689999999999994

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=91.66  E-value=0.13  Score=37.68  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             hHHHHHH-HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHH
Q psy14616          4 QLQARRA-AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIA   42 (174)
Q Consensus         4 ~~~~~~~-l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la   42 (174)
                      |+++-+. +.-+.+.+-+|...  .++-||++|+|||++.
T Consensus        60 q~~vy~~~~~plv~~~l~G~n~--ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          60 QSDIFDFSIKPTVDDILNGYNG--TVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             HHHHHHHHTHHHHHHHTTTCCE--EEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCce--eEEecccCCCCcceee
Confidence            5555433 34455444456543  6778999999999775

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.53  E-value=0.072  Score=36.45  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.+.|.|.+|||||+.+|....
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            38899999999999999997654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.46  E-value=0.089  Score=32.53  Aligned_cols=25  Identities=12%  Similarity=0.219  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      -.++|.|-+|.||+++|++|-..|+
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999987774

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=91.34  E-value=0.19  Score=37.68  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         11 AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        11 l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      |..+.+.++.|.   +..+|.|-+|+|||.++-++++.+++.
T Consensus        20 I~~l~~~l~~g~---~~q~l~GltGS~ka~~iA~l~~~~~rp   58 (413)
T d1t5la1          20 IAKLVDGLRRGV---KHQTLLGATGTGKTFTISNVIAQVNKP   58 (413)
T ss_dssp             HHHHHHHHHHTC---SEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhcCC---CcEEEeCCCCcHHHHHHHHHHHHhCCC
Confidence            366666666654   478899999999999998998888754

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=90.88  E-value=0.17  Score=36.87  Aligned_cols=37  Identities=32%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             hHHHHHH-HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHH
Q psy14616          4 QLQARRA-AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIA   42 (174)
Q Consensus         4 ~~~~~~~-l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la   42 (174)
                      |+++-+. +..+.+.+-+|...  .++-||+.|+|||++.
T Consensus        61 q~~vy~~~~~~lv~~~l~G~n~--~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          61 QIDVYRSVVCPILDEVIMGYNC--TIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEE--EEEEEECTTSSHHHHH
T ss_pred             HHHHHHHHHHHhHHHHhccCCc--eEEeeeeccccceEEe
Confidence            5555433 24455555556544  7778999999999775

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.14  Score=34.49  Aligned_cols=16  Identities=44%  Similarity=0.690  Sum_probs=14.5

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      ++++++..|+|+|||.
T Consensus        38 g~dvl~~A~TGsGKTl   53 (207)
T d1t6na_          38 GMDVLCQAKSGMGKTA   53 (207)
T ss_dssp             TCCEEEECCTTSCHHH
T ss_pred             CCCeEEEecccccccc
Confidence            5799999999999994

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.17  Score=36.58  Aligned_cols=38  Identities=26%  Similarity=0.255  Sum_probs=24.4

Q ss_pred             hHHHHHHH-HHHHHHHHhcCcCCceEEEEcCCCCcHHHHHH
Q psy14616          4 QLQARRAA-GVVLGMIKEGKIAGRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus         4 ~~~~~~~l-~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~   43 (174)
                      |+++-+.+ .-+.+.+-+|...  .++-||++|+|||++..
T Consensus        56 q~~vf~~~~~~lv~~~l~G~n~--~i~aYGqtgSGKTyT~~   94 (323)
T d1bg2a_          56 QEQVYNDCAKKIVKDVLEGYNG--TIFAYGQTSSGKTHTME   94 (323)
T ss_dssp             HHHHHHHHTHHHHHHHHTTCCE--EEEEECSTTSSHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCc--ceeeecccCCCCceecc
Confidence            55554332 3444444456543  77789999999998864

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.57  E-value=0.047  Score=36.74  Aligned_cols=16  Identities=44%  Similarity=0.659  Sum_probs=14.6

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      ++++++..|+|+|||.
T Consensus        38 G~dvii~a~TGSGKTl   53 (209)
T d1q0ua_          38 GESMVGQSQTGTGKTH   53 (209)
T ss_dssp             TCCEEEECCSSHHHHH
T ss_pred             CCCeEeecccccccce
Confidence            5699999999999996

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.41  E-value=0.33  Score=34.02  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      -.+.+.|-|.|||||++.++..
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEecCccchhhhhhhhhc
Confidence            4588999999999999999985

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=90.04  E-value=0.24  Score=36.11  Aligned_cols=37  Identities=32%  Similarity=0.325  Sum_probs=24.6

Q ss_pred             hHHHHHH-HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHH
Q psy14616          4 QLQARRA-AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIA   42 (174)
Q Consensus         4 ~~~~~~~-l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la   42 (174)
                      |+++-+. ..-+...+-+|...  .++-||++|+|||++.
T Consensus        67 Q~~vy~~~~~plv~~~l~G~n~--ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          67 QKQVYRDIGEEMLQHAFEGYNV--CIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             HHHHHHHTHHHHHHHHHTTCCE--EEEEECSTTSSHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCc--eeeeeccCCCCCceee
Confidence            5555443 33445555556543  7778999999999886

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=89.67  E-value=0.21  Score=36.67  Aligned_cols=38  Identities=32%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             hHHHHHH-HHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHH
Q psy14616          4 QLQARRA-AGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAM   43 (174)
Q Consensus         4 ~~~~~~~-l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~   43 (174)
                      |+++-+. ..-+.+.+-+|...  .++-||.+|+|||++..
T Consensus        94 Q~~Vy~~~~~plv~~~l~G~n~--tifaYGqTGSGKTyTm~  132 (362)
T d1v8ka_          94 NEVVYRFTARPLVQTIFEGGKA--TCFAYGQTGSGKTHTMG  132 (362)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCEE--EEEEEESTTSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCc--eEEeeccCCCCCceeee
Confidence            5555443 23344444456543  67779999999998764

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=89.54  E-value=0.38  Score=35.89  Aligned_cols=40  Identities=33%  Similarity=0.525  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhcCcCCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy14616         10 AAGVVLGMIKEGKIAGRAILLAGQPGTGKTAIAMGLAQALGPD   52 (174)
Q Consensus        10 ~l~~~~~~~~~g~~~~~~~ll~GppG~GKT~la~~la~~l~~~   52 (174)
                      +|..+.+.+++|.   +...|.|.+|++|+.++-++++.+++.
T Consensus        16 aI~~l~~~L~~g~---~~~~L~GlsgS~ka~~~A~l~~~~~rp   55 (408)
T d1c4oa1          16 AIAGLVEALRDGE---RFVTLLGATGTGKTVTMAKVIEALGRP   55 (408)
T ss_dssp             HHHHHHHHHHTTC---SEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcCC---CcEEEecCCCCHHHHHHHHHHHHhCCC
Confidence            3466676667654   357899999999999999999988865

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.15  Score=34.23  Aligned_cols=16  Identities=50%  Similarity=0.816  Sum_probs=14.5

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      ++++++..|+|+|||.
T Consensus        40 g~dvl~~a~TGsGKTl   55 (206)
T d1veca_          40 GRDILARAKNGTGKSG   55 (206)
T ss_dssp             TCCEEEECCSSSTTHH
T ss_pred             CCCEEeeccCcccccc
Confidence            5799999999999994

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.19  E-value=0.11  Score=36.94  Aligned_cols=34  Identities=15%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh---CCCCCeeeecc
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL---GPDTPFTSMAG   60 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l---~~~~~~~~~~~   60 (174)
                      .+=+.|.|.+||||+-.++...-   -.++||+++.+
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~p   48 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP   48 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccC
Confidence            45589999999999999998541   23356665543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.14  E-value=0.18  Score=36.87  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      +|+.+.|..|.|||||+.++....|
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            6999999999999999999987664

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.11  Score=35.33  Aligned_cols=17  Identities=47%  Similarity=0.702  Sum_probs=14.9

Q ss_pred             CceEEEEcCCCCcHHHH
Q psy14616         25 GRAILLAGQPGTGKTAI   41 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~l   41 (174)
                      +++++...|+|+|||..
T Consensus        49 g~dvl~~a~TGsGKTla   65 (218)
T d2g9na1          49 GYDVIAQAQSGTGKTAT   65 (218)
T ss_dssp             TCCEEEECCTTSSHHHH
T ss_pred             CCCEEEEcccchhhhhh
Confidence            57999999999999953

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.97  E-value=0.11  Score=35.12  Aligned_cols=16  Identities=50%  Similarity=0.794  Sum_probs=14.6

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      ++.++...|+|+|||.
T Consensus        47 g~dvl~~a~TGsGKT~   62 (212)
T d1qdea_          47 GHDVLAQAQSGTGKTG   62 (212)
T ss_dssp             TCCEEEECCTTSSHHH
T ss_pred             CCCEEeecccccchhh
Confidence            5799999999999995

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.62  E-value=0.33  Score=34.24  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l   49 (174)
                      ..++.-|+|.|||.++-.+++.+
T Consensus       130 ~~il~~pTGsGKT~i~~~i~~~~  152 (282)
T d1rifa_         130 RRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CceeEEEcccCccHHHHHHHHHh
Confidence            56777899999999888887654

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=88.23  E-value=0.11  Score=35.76  Aligned_cols=16  Identities=50%  Similarity=0.733  Sum_probs=14.5

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      ++++++..|+|+|||.
T Consensus        58 g~dvvi~a~TGsGKTl   73 (238)
T d1wrba1          58 HRDIMACAQTGSGKTA   73 (238)
T ss_dssp             TCCEEEECCTTSSHHH
T ss_pred             CCCEEEECCCCCCcce
Confidence            4699999999999995

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.94  E-value=0.26  Score=33.50  Aligned_cols=16  Identities=56%  Similarity=0.891  Sum_probs=14.5

Q ss_pred             CceEEEEcCCCCcHHH
Q psy14616         25 GRAILLAGQPGTGKTA   40 (174)
Q Consensus        25 ~~~~ll~GppG~GKT~   40 (174)
                      +++++...|+|+|||.
T Consensus        54 g~dvi~~a~TGSGKTl   69 (222)
T d2j0sa1          54 GRDVIAQSQSGTGKTA   69 (222)
T ss_dssp             TCCEEEECCTTSSHHH
T ss_pred             CCCeEEEcCcchhhhh
Confidence            5799999999999994

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.25  Score=34.92  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=18.5

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      ..+-+.||.++|||+|...++.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            3555889999999999998875

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.82  E-value=0.28  Score=33.79  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      |+.+.|..+.|||||+..|...+|
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~g   31 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKCG   31 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHcC
Confidence            899999999999999999988776

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.37  E-value=0.27  Score=34.87  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~   47 (174)
                      .-+++.|..+.||||+..+|..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCHHHHHHHHhC
Confidence            3688999999999999999973

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.63  E-value=0.3  Score=36.37  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=18.0

Q ss_pred             ceEEEEcCCCCcHHHH-HHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAI-AMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~l-a~~la~~l   49 (174)
                      ...|+.+.+|||||++ +.-+++.+
T Consensus        17 g~~lv~A~AGsGKT~~l~~r~~~ll   41 (485)
T d1w36b1          17 GERLIEASAGTGKTFTIAALYLRLL   41 (485)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCchHHHHHHHHHHHHHH
Confidence            4678899999999965 45555554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=85.56  E-value=0.38  Score=32.68  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      .++++.|....|||||+.+|...+|
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3678999999999999999987765

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.55  E-value=0.29  Score=32.25  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~~   48 (174)
                      +|+.|+..+|||..|..++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            688999999999999998743

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=84.95  E-value=0.89  Score=30.55  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      .+.+|.=++|+|||..+-+++..+
T Consensus        32 ~g~iLaDe~GlGKT~~~i~~~~~~   55 (230)
T d1z63a1          32 FGICLADDMGLGKTLQTIAVFSDA   55 (230)
T ss_dssp             CCEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCChHHHHHHhhhhh
Confidence            478888899999998887777654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=84.40  E-value=0.44  Score=31.66  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHHh
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQAL   49 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~l   49 (174)
                      -++.+.|.+..|||||+.+|...+
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHH
Confidence            378899999999999999997654

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.36  E-value=0.48  Score=31.62  Aligned_cols=23  Identities=26%  Similarity=0.183  Sum_probs=17.8

Q ss_pred             ceEEEEcCCCCcHHHHHHHHHHH
Q psy14616         26 RAILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        26 ~~~ll~GppG~GKT~la~~la~~   48 (174)
                      .++++..|+|+|||..+...+..
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccccc
Confidence            48999999999999866544433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.14  E-value=0.71  Score=32.35  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~   47 (174)
                      -+++.|.-.+||||+..+|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHhC
Confidence            588999999999999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.36  E-value=0.47  Score=32.08  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHHhC
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQALG   50 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~l~   50 (174)
                      ++.+.|.-+.|||||+..|...+|
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHB
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcC
Confidence            788999999999999999977665

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.03  E-value=0.3  Score=34.85  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy14616         28 ILLAGQPGTGKTAIAMGLAQ   47 (174)
Q Consensus        28 ~ll~GppG~GKT~la~~la~   47 (174)
                      +=|.|.|.||||||-.++..
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            45899999999999999953

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=81.13  E-value=0.47  Score=33.21  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHHH
Q psy14616         27 AILLAGQPGTGKTAIAMGLAQA   48 (174)
Q Consensus        27 ~~ll~GppG~GKT~la~~la~~   48 (174)
                      .+=|.|-|.+||||+-.++...
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            3458999999999999999853