Psyllid ID: psy14623

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTANNWKQERMTVLLSKELDH
ccccccccccHHcccccEEEEEcccHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccEEEEEEEEcccccccccccccccccEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEccccHHHHHHHHHccEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHcEEccccccccHHHHccccccccccccccccccEEEEEcccccc
cccHHHHHHHHHHccccEEEEEcccccEEEccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccEEcccccEEEHEEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEEEccccccEEEEEEEEEEcccccEccEEEcccEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEcEEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHccHHHHccHHHHHcccccccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccc
msggmipglmmdefgrpfIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLktslgpkgldkmmvssdgdvtvtndGATILKLMDVDHEIAKLMVQLSqsqddeigdgtTGVVVLAGALLEQAEHLldkgihpiriaDGFELAAQCAVKHLETiadsfpvnpdnlePLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEgkvggkleDTMLVKGVVidkdfshpqmpkeLRDVKLAIltcpfepprpktkhnldvqsVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQkqlpavrwvggpdiELIAIVtggrivprfeeltseklgkaglgnqfwynqrshaghtdIELIAIVtggrivprfeeltseklgkaglvreisfgttkDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLalaensglspietlTEVKSRqvkevnpalgidcmlngtndmKQQNVIEALRSKKQQILLSTQLVKMILKiddirspndgicdEEMAAAWTSSMEVTANNWKQERMTVLLSKELDH
MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANtlktslgpkglDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETiadsfpvnpDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIkvegkvggkledtMLVKGVVIDkdfshpqmpKELRDVKLAILTCPfepprpktkhnldvqsvEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEEltseklgkaglvREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTANNWKQERMTVllskeldh
MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGaaevscaiavaaeaDKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTANNWKQERMTVLLSKELDH
********LMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLG***L***MV**DGDVTVTNDGATILKLMDVDHEIAKLMVQLSQ**DDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPF*********************LRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTANNW***************
**************GRPFII*****************SHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKID***********************************VLLSKE***
MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTANNWKQERMTVLLSKELDH
*****IPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND*************************************
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MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPNDGICDEEMAAAWTSSMEVTANNWKQERMTVLLSKELDH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query622 2.2.26 [Sep-21-2011]
Q4R6V2541 T-complex protein 1 subun N/A N/A 0.855 0.983 0.693 0.0
P48643541 T-complex protein 1 subun yes N/A 0.855 0.983 0.693 0.0
Q5RF02541 T-complex protein 1 subun yes N/A 0.855 0.983 0.691 0.0
Q68FQ0541 T-complex protein 1 subun yes N/A 0.855 0.983 0.689 0.0
P80316541 T-complex protein 1 subun yes N/A 0.855 0.983 0.688 0.0
P47209542 T-complex protein 1 subun yes N/A 0.852 0.977 0.632 0.0
P54411535 T-complex protein 1 subun N/A N/A 0.856 0.996 0.628 0.0
O04450535 T-complex protein 1 subun yes N/A 0.852 0.990 0.631 0.0
P40412535 T-complex protein 1 subun N/A N/A 0.856 0.996 0.631 0.0
Q9UTM4546 T-complex protein 1 subun yes N/A 0.847 0.965 0.608 0.0
>sp|Q4R6V2|TCPE_MACFA T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1 Back     alignment and function desciption
 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/577 (69%), Positives = 478/577 (82%), Gaps = 45/577 (7%)

Query: 9   LMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDG 68
           L  DE+GRPF+I+++Q  + R++G +A+KSHI+AAK +ANT++TSLGP GLDKMMV  DG
Sbjct: 7   LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDG 66

Query: 69  DVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDK 128
           DVTVTNDGATIL +MDVDH+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+AE LLD+
Sbjct: 67  DVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDR 126

Query: 129 GIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMA 188
           GIHPIRIADG+E AA+ A++HL+ I+DS  V+  + EPLI+TA TTLGSK++N CHRQMA
Sbjct: 127 GIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMA 186

Query: 189 EIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDV 248
           EIAVNAV+ VAD+E+RDV+FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQMPK++ D 
Sbjct: 187 EIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDA 246

Query: 249 KLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGF 308
           K+AILTCPFEPP+PKTKH LDV SVEDYK L+KYE+EKF  M+ ++K TGA LAICQWGF
Sbjct: 247 KIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGF 306

Query: 309 DDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQ 368
           DDEANHLLLQ  LPAVRWVGGP+IELIAI TGGRIVPRF ELT+EKLG AG         
Sbjct: 307 DDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAG--------- 357

Query: 369 RSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSK 428
                                               LV+EISFGTTKD MLVIE+C+NS+
Sbjct: 358 ------------------------------------LVQEISFGTTKDKMLVIEQCKNSR 381

Query: 429 AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKIS 488
           AVTIFIRGGNKMIIEEAKRS+HDALCV+RNL+ +NRVVYGGGAAE+SCA+AV+ EADK  
Sbjct: 382 AVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCP 441

Query: 489 SIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDM 548
           ++EQYA RAFADALE IP+AL+ENSG++PI+T+TEV++RQVKE+NPALGIDC+  GTNDM
Sbjct: 442 TLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDM 501

Query: 549 KQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND 585
           KQQ+VIE L  KKQQI L+TQ+V+MILKIDDIR P +
Sbjct: 502 KQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.
Macaca fascicularis (taxid: 9541)
>sp|P48643|TCPE_HUMAN T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1 Back     alignment and function description
>sp|Q5RF02|TCPE_PONAB T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1 Back     alignment and function description
>sp|Q68FQ0|TCPE_RAT T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1 Back     alignment and function description
>sp|P80316|TCPE_MOUSE T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1 Back     alignment and function description
>sp|P47209|TCPE_CAEEL T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1 Back     alignment and function description
>sp|P54411|TCPE2_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1 Back     alignment and function description
>sp|O04450|TCPE_ARATH T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1 Back     alignment and function description
>sp|P40412|TCPE1_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1 Back     alignment and function description
>sp|Q9UTM4|TCPE_SCHPO T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
359843234545 heat shock protein 60 [Schistocerca greg 0.860 0.981 0.776 0.0
242017287551 Hsp60 protein, putative [Pediculus human 0.856 0.967 0.769 0.0
237874211542 chaperonin containing TCP1, subunit 5 (e 0.861 0.988 0.756 0.0
156546520542 PREDICTED: T-complex protein 1 subunit e 0.861 0.988 0.752 0.0
321463189540 Cct5-prov protein [Daphnia pulex] 0.858 0.988 0.728 0.0
307207037544 T-complex protein 1 subunit epsilon [Har 0.860 0.983 0.733 0.0
125806631542 GA21078 [Drosophila pseudoobscura pseudo 0.861 0.988 0.723 0.0
443701329543 hypothetical protein CAPTEDRAFT_161906 [ 0.856 0.981 0.721 0.0
17647245542 T-complex chaperonin 5, isoform A [Droso 0.861 0.988 0.723 0.0
307176897544 T-complex protein 1 subunit epsilon [Cam 0.860 0.983 0.724 0.0
>gi|359843234|gb|AEV89752.1| heat shock protein 60 [Schistocerca gregaria] Back     alignment and taxonomy information
 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/581 (77%), Positives = 494/581 (85%), Gaps = 46/581 (7%)

Query: 6   IPG-LMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMV 64
            PG L  DEFGRPFII+R+QQ Q+R+ G +A+KSH+ A K IAN L+TSLGPKGLDKMMV
Sbjct: 4   FPGTLAFDEFGRPFIIIRDQQNQQRLTGVEALKSHMAAGKTIANVLRTSLGPKGLDKMMV 63

Query: 65  SSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEH 124
           S+DGDVTVTNDGATILK MDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAE 
Sbjct: 64  SADGDVTVTNDGATILKQMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEQ 123

Query: 125 LLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCH 184
           LLDKGIHPIRIADGFELAA  AVKHL++IADSFP + +NLEPLI+TAMTTLGSKI+NKCH
Sbjct: 124 LLDKGIHPIRIADGFELAAHHAVKHLDSIADSFPFDVNNLEPLIQTAMTTLGSKIVNKCH 183

Query: 185 RQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKE 244
           RQMAEIAVNAV+AVAD+EK+DVNFELIKV GKVGG+LEDTMLVKGVV+DKDFSHPQMPK 
Sbjct: 184 RQMAEIAVNAVLAVADMEKKDVNFELIKVIGKVGGRLEDTMLVKGVVVDKDFSHPQMPKV 243

Query: 245 LRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAIC 304
           L+DVKLAILTCPFEPP+PKTKH LDV SVEDYK LR YE EKF  MV +VK TGATLAIC
Sbjct: 244 LKDVKLAILTCPFEPPKPKTKHKLDVTSVEDYKALRAYEAEKFTEMVQQVKGTGATLAIC 303

Query: 305 QWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQF 364
           QWGFDDEANHLLLQK+LPAVRWVGGP+IELIAI TGGRIVPRFEELT +KLG AG     
Sbjct: 304 QWGFDDEANHLLLQKELPAVRWVGGPEIELIAIATGGRIVPRFEELTPDKLGHAG----- 358

Query: 365 WYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEEC 424
                                                   LVREISFGTTKD MLVIEEC
Sbjct: 359 ----------------------------------------LVREISFGTTKDRMLVIEEC 378

Query: 425 ENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEA 484
           +NS+AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLV +NR+VYGGGAAE+SCA++V+AEA
Sbjct: 379 KNSRAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVVDNRIVYGGGAAEISCALSVSAEA 438

Query: 485 DKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNG 544
           DK SS+EQYAFRAFA+ALES+PLALAENSGLSPI T+TEVK+RQ  E N ALGIDCMLNG
Sbjct: 439 DKFSSLEQYAFRAFAEALESVPLALAENSGLSPIHTVTEVKARQAVEGNSALGIDCMLNG 498

Query: 545 TNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRSPND 585
           T DM+QQ+VIE LRSKKQQI+L+TQLVKMILKIDDIR PND
Sbjct: 499 TADMRQQHVIETLRSKKQQIVLATQLVKMILKIDDIRCPND 539

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242017287|ref|XP_002429123.1| Hsp60 protein, putative [Pediculus humanus corporis] gi|212513987|gb|EEB16385.1| Hsp60 protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|237874211|ref|NP_001153860.1| chaperonin containing TCP1, subunit 5 (epsilon) [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|156546520|ref|XP_001605758.1| PREDICTED: T-complex protein 1 subunit epsilon-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|321463189|gb|EFX74207.1| Cct5-prov protein [Daphnia pulex] Back     alignment and taxonomy information
>gi|307207037|gb|EFN84860.1| T-complex protein 1 subunit epsilon [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|125806631|ref|XP_001360097.1| GA21078 [Drosophila pseudoobscura pseudoobscura] gi|195148982|ref|XP_002015438.1| GL11023 [Drosophila persimilis] gi|54635268|gb|EAL24671.1| GA21078 [Drosophila pseudoobscura pseudoobscura] gi|194109285|gb|EDW31328.1| GL11023 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|443701329|gb|ELT99844.1| hypothetical protein CAPTEDRAFT_161906 [Capitella teleta] Back     alignment and taxonomy information
>gi|17647245|ref|NP_523707.1| T-complex chaperonin 5, isoform A [Drosophila melanogaster] gi|5679346|gb|AAD46928.1|AF172635_1 GM12270p [Drosophila melanogaster] gi|7303510|gb|AAF58565.1| T-complex chaperonin 5, isoform A [Drosophila melanogaster] gi|220943602|gb|ACL84344.1| Cct5-PA [synthetic construct] gi|220953574|gb|ACL89330.1| Cct5-PA [synthetic construct] Back     alignment and taxonomy information
>gi|307176897|gb|EFN66237.1| T-complex protein 1 subunit epsilon [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query622
FB|FBgn0010621542 Cct5 "T-complex Chaperonin 5" 0.569 0.653 0.802 3.2e-232
UNIPROTKB|F1NKN0545 CCT5 "Uncharacterized protein" 0.565 0.645 0.761 6.1e-229
UNIPROTKB|Q5F411541 CCT5 "Uncharacterized protein" 0.565 0.650 0.761 6.1e-229
UNIPROTKB|F1MWD3541 CCT5 "Uncharacterized protein" 0.565 0.650 0.747 2.1e-226
UNIPROTKB|P48643541 CCT5 "T-complex protein 1 subu 0.565 0.650 0.747 4.4e-226
ZFIN|ZDB-GENE-030131-977541 cct5 "chaperonin containing TC 0.565 0.650 0.75 3.1e-225
RGD|735161541 Cct5 "chaperonin containing Tc 0.565 0.650 0.747 3.5e-224
MGI|MGI:107185541 Cct5 "chaperonin containing Tc 0.565 0.650 0.747 9.2e-224
UNIPROTKB|E2RB81540 CCT5 "Uncharacterized protein" 0.564 0.65 0.738 1.2e-223
UNIPROTKB|J9PAI4532 CCT5 "Uncharacterized protein" 0.556 0.650 0.739 5.8e-222
FB|FBgn0010621 Cct5 "T-complex Chaperonin 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1488 (528.9 bits), Expect = 3.2e-232, Sum P(2) = 3.2e-232
 Identities = 285/355 (80%), Positives = 321/355 (90%)

Query:     7 PGLM-MDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVS 65
             PG    DE+GRPFIILR+Q+ QKRI G DAIK+HI+AA+ IA+TLKTSLGPKGLDK+MVS
Sbjct:     5 PGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLKTSLGPKGLDKIMVS 64

Query:    66 SDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHL 125
              DGDVTVTNDGATI+KLM+VDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAE L
Sbjct:    65 PDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEGL 124

Query:   126 LDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHR 185
             +D+GIHPIRIADGFELAAQCA+K L+ IA  FPV+P N EPLI+ AMTTLGSKI+NKCHR
Sbjct:   125 IDRGIHPIRIADGFELAAQCAIKQLDAIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHR 184

Query:   186 QMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKEL 245
             QMAE+AV+AV+ VAD+EK+DVNFELIK+E KVGG++ED+MLVKGV++DK  SH QMPKEL
Sbjct:   185 QMAEMAVDAVLNVADIEKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKEL 244

Query:   246 RDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQ 305
             R+VKLAILTCPFEPP+PKTKH LDV S EDY+ LR+YEQEKF  MV +VK  GATLAICQ
Sbjct:   245 RNVKLAILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATLAICQ 304

Query:   306 WGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGL 360
             WGFDDEANHLLLQ++LPAVRWVGGP+IELIAI TGGRIVPRFEELT EKLG AGL
Sbjct:   305 WGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELTPEKLGVAGL 359
GO:0006457 "protein folding" evidence=ISS
GO:0051082 "unfolded protein binding" evidence=ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS
GO:0005832 "chaperonin-containing T-complex" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|F1NKN0 CCT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F411 CCT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWD3 CCT5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P48643 CCT5 "T-complex protein 1 subunit epsilon" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-977 cct5 "chaperonin containing TCP1, subunit 5 (epsilon)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|735161 Cct5 "chaperonin containing Tcp1, subunit 5 (epsilon)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107185 Cct5 "chaperonin containing Tcp1, subunit 5 (epsilon)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB81 CCT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAI4 CCT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O28045THSA_ARCFUNo assigned EC number0.38420.82310.9394yesN/A
Q9V2T4THSB_SULACNo assigned EC number0.36310.83110.9349yesN/A
P54411TCPE2_AVESANo assigned EC number0.62800.85690.9962N/AN/A
P47209TCPE_CAEELNo assigned EC number0.63250.85200.9778yesN/A
Q54TD3TCPE_DICDINo assigned EC number0.62060.84720.9795yesN/A
Q68FQ0TCPE_RATNo assigned EC number0.68970.85530.9833yesN/A
P40413TCPE_YEASTNo assigned EC number0.55970.84240.9323yesN/A
P40412TCPE1_AVESANo assigned EC number0.63140.85690.9962N/AN/A
P48643TCPE_HUMANNo assigned EC number0.69320.85530.9833yesN/A
P48424THSA_THEACNo assigned EC number0.36260.81670.9321yesN/A
O24735THSB_SULTONo assigned EC number0.36440.82790.9329yesN/A
Q9V2S9THSA_SULSONo assigned EC number0.37630.82630.9194yesN/A
Q9V2Q7THS_PYRABNo assigned EC number0.39470.82310.9309yesN/A
P80316TCPE_MOUSENo assigned EC number0.68800.85530.9833yesN/A
Q9UTM4TCPE_SCHPONo assigned EC number0.60830.84720.9652yesN/A
Q4R6V2TCPE_MACFANo assigned EC number0.69320.85530.9833N/AN/A
O26885THSB_METTHNo assigned EC number0.37870.81670.9442yesN/A
O57762THS_PYRHONo assigned EC number0.39260.82630.9362yesN/A
O04450TCPE_ARATHNo assigned EC number0.63130.85200.9906yesN/A
O30561THS1_HALVDNo assigned EC number0.35200.83110.9232yesN/A
Q52500THSB_PYRKONo assigned EC number0.39430.82630.9413yesN/A
Q8SRP9TCPE_ENCCUNo assigned EC number0.47470.84240.9849yesN/A
Q5RF02TCPE_PONABNo assigned EC number0.69150.85530.9833yesN/A
Q9YA66THSB_AERPENo assigned EC number0.38210.83600.9489yesN/A
P50016THS_METKANo assigned EC number0.39430.82630.9431yesN/A
Q58405THS_METJANo assigned EC number0.40450.82790.9501yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 0.0
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-169
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-159
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-155
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-155
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-135
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-125
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-107
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-107
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-105
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 5e-99
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-97
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 3e-95
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 2e-92
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 7e-91
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 7e-88
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 4e-82
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 5e-79
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 1e-78
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-74
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-64
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 1e-12
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-11
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 3e-11
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 9e-11
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 2e-10
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 3e-10
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 6e-10
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 2e-09
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 8e-09
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-08
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 3e-08
CHL00093529 CHL00093, groEL, chaperonin GroEL 7e-06
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 2e-04
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.001
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information 
 Score = 1013 bits (2621), Expect = 0.0
 Identities = 405/571 (70%), Positives = 472/571 (82%), Gaps = 45/571 (7%)

Query: 12  DEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVT 71
           DE+GRPFII+R Q+++KR+ G +A KSHI+AAK++AN L+TSLGP+G+DK++VS DG+VT
Sbjct: 1   DEYGRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVT 60

Query: 72  VTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIH 131
           VTNDGATIL+ MDVDH+IAKL+V+LS+SQDDEIGDGTTGVVVLAGALLEQAE LLD+GIH
Sbjct: 61  VTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIH 120

Query: 132 PIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIA 191
           PIRIADG+E A + AV+HLE IAD    +PDN EPLI+TAMT+LGSKI+++CHRQ AEIA
Sbjct: 121 PIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIA 180

Query: 192 VNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLA 251
           V+AV++VADLE++DVNFELIKVEGKVGG+LEDT LVKG+VIDKDFSHPQMPKE++D K+A
Sbjct: 181 VDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIA 240

Query: 252 ILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDE 311
           ILTCPFEPP+PKTKH LD+ SVEDYK+L++YEQ+ F  MV++VK  GA L ICQWGFDDE
Sbjct: 241 ILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDE 300

Query: 312 ANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSH 371
           ANHLLLQ  LPAVRWVGG                                          
Sbjct: 301 ANHLLLQNGLPAVRWVGGV----------------------------------------- 319

Query: 372 AGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVT 431
               +IELIAI TGGRIVPRFE+L+ EKLGKAGLVREISFGTTKD MLVIE C NSKAVT
Sbjct: 320 ----EIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVT 375

Query: 432 IFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIE 491
           IFIRGGNKMIIEEAKRS+HDALCVVRNL+ +NR+VYGGGAAE+SC++AV   ADK S IE
Sbjct: 376 IFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIE 435

Query: 492 QYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQ 551
           QYA RAFADALESIPLALAENSGL+PIETL+EVK+RQVKE NP LGIDC+  GTNDMK+Q
Sbjct: 436 QYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQ 495

Query: 552 NVIEALRSKKQQILLSTQLVKMILKIDDIRS 582
            V E L SKKQQILL+TQ+VKMILKIDD+  
Sbjct: 496 KVFETLISKKQQILLATQVVKMILKIDDVIV 526

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 622
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
KOG0361|consensus543 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358|consensus534 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0363|consensus527 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
KOG0364|consensus527 100.0
KOG0362|consensus537 100.0
KOG0360|consensus545 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359|consensus520 100.0
KOG0357|consensus400 100.0
KOG0356|consensus550 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230|consensus 1598 99.85
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information 
Probab=100.00  E-value=4.9e-105  Score=889.90  Aligned_cols=525  Identities=77%  Similarity=1.181  Sum_probs=495.2

Q ss_pred             CCCCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHH
Q psy14623         13 EFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKL   92 (622)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akl   92 (622)
                      ..+.|..+++++.+.+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akl   81 (526)
T cd03339           2 EYGRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKL   81 (526)
T ss_pred             CCCCCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHH
Confidence            34556555666533457899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHH
Q psy14623         93 MVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAM  172 (622)
Q Consensus        93 l~~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~  172 (622)
                      +++++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++++..+..+.+.|.++|+
T Consensus        82 l~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~  161 (526)
T cd03339          82 LVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAM  161 (526)
T ss_pred             HHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998877655556889999999


Q ss_pred             HhhcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEE
Q psy14623        173 TTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAI  252 (622)
Q Consensus       173 tsl~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~l  252 (622)
                      |++++|+.+.+.++|++++++|+..+.+.....+|++.|+|++++|++++||++++|++|+++|.+++|+++.+|+||++
T Consensus       162 tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~l  241 (526)
T cd03339         162 TSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAI  241 (526)
T ss_pred             HhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEE
Confidence            99999999899999999999999998653334567788999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccH
Q psy14623        253 LTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDI  332 (622)
Q Consensus       253 l~~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L  332 (622)
                      ++++|++++++++.++.++++++++.+.++|+++++++++++++.|++||+++++|++.+++||.++||.+++++++++|
T Consensus       242 l~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~L  321 (526)
T cd03339         242 LTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI  321 (526)
T ss_pred             EEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHH
Confidence            99999999998888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEec
Q psy14623        333 ELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFG  412 (622)
Q Consensus       333 ~~ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g  412 (622)
                      +|||++|||++++++++                                             +++..+|+|+.|+++.+|
T Consensus       322 erIa~~tGa~ii~~l~~---------------------------------------------l~~~~LG~~~~v~~~~ig  356 (526)
T cd03339         322 ELIAIATGGRIVPRFED---------------------------------------------LSPEKLGKAGLVREISFG  356 (526)
T ss_pred             HHHHHHhCCEEecchhh---------------------------------------------CChhhcccCceEEEEEec
Confidence            99999999999998877                                             667789999999999999


Q ss_pred             cccceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhH
Q psy14623        413 TTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQ  492 (622)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~  492 (622)
                      .+.++++||++|++++.+||+|||+|+.+++|++|+++|||+++++++++|++|||||++|++|+.+|++++...++.++
T Consensus       357 ~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~  436 (526)
T cd03339         357 TTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQ  436 (526)
T ss_pred             CCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHH
Confidence            65679999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHH
Q psy14623        493 YAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVK  572 (622)
Q Consensus       493 ~~~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~  572 (622)
                      +++++|++||+.||++|++|||+|+.+++++|+..|.++++.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|+
T Consensus       437 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~  516 (526)
T cd03339         437 YAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVK  516 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999975556789999999999999999999999999999999999999


Q ss_pred             HHHhhhheec
Q psy14623        573 MILKIDDIRS  582 (622)
Q Consensus       573 ~lL~iD~iI~  582 (622)
                      +|||||++|.
T Consensus       517 ~iL~iD~ii~  526 (526)
T cd03339         517 MILKIDDVIV  526 (526)
T ss_pred             HHhhhceecC
Confidence            9999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
>KOG0361|consensus Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>KOG0356|consensus Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-179
3izh_A513 Mm-Cpn D386a With Atp Length = 513 7e-98
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 7e-98
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 2e-97
3izi_A513 Mm-Cpn Rls With Atp Length = 513 2e-97
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 2e-94
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 2e-94
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 5e-94
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 2e-93
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-92
1a6d_B543 Thermosome From T. Acidophilum Length = 543 5e-92
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-91
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-91
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-89
1a6d_A545 Thermosome From T. Acidophilum Length = 545 4e-89
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-78
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 1e-77
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-74
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-70
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-69
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-61
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-57
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-56
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-53
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-52
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-51
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-48
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-41
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-37
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-35
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 6e-19
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 9e-17
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 4e-14
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 3e-10
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 2e-09
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 2e-09
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 2e-09
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 2e-09
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 3e-09
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 3e-09
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 3e-09
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 3e-09
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 3e-09
1ss8_A524 Groel Length = 524 3e-09
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 4e-09
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 4e-09
1oel_A547 Conformational Variability In The Refined Structure 4e-09
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 4e-09
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 4e-09
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 4e-08
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 2e-04
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/557 (68%), Positives = 449/557 (80%), Gaps = 45/557 (8%)
Query: 27  QKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVD 86
           + R++G +A+KSHI+AAK +ANT+KTSLGP GLDKMMV  DGDVTVTNDGATIL +MDVD
Sbjct: 3   KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVD 62
Query: 87  HEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCA 146
           H+IAKLMV+LS+SQDDEIGDGTTGVVVLAGALLE+AE LLD+GIHPIRIADG+E AA+ A
Sbjct: 63  HQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIA 122
Query: 147 VKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVNAVMAVADLEKRDV 206
           ++HL+ I+DS  V+  N EPLI+TA TTLGSK++N CHRQMAEIAVNAV+ VAD+++RDV
Sbjct: 123 IEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDV 182
Query: 207 NFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKH 266
           +FELIKVEGKVGG+LEDT L+KGV++DKDFSHPQMPK++ D K+AILTCPFEPP+PKTKH
Sbjct: 183 DFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKH 242
Query: 267 NLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRW 326
            LDV SVED+K L+KYE+EKF  M+ ++K TGA LA+CQWGFDDEANHLLLQ  LPAVRW
Sbjct: 243 KLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRW 302
Query: 327 VGGPDIELIAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGG 386
           VGGP+IELIAI TGGRIVPRF ELT+EKLG AG                           
Sbjct: 303 VGGPEIELIAIATGGRIVPRFSELTAEKLGFAG--------------------------- 335
Query: 387 RIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAK 446
                             LV+EISFGTTKD MLVIE+C+NS+AVTIFIRGGNKMIIEEAK
Sbjct: 336 ------------------LVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAK 377
Query: 447 RSIHDALCVVRNLVTENRVVYGGGXXXXXXXXXXXXXXDKISSIEQYAFRAFADALESIP 506
           RS+HDALCV+RNL+ +NRVVYGGG              DK  ++EQYA RAFADALE IP
Sbjct: 378 RSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIP 437
Query: 507 LALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILL 566
           +ALAENSG++PI+T+TEV++RQVKEVNPALGIDC+  GTNDMK Q+VIE L  KKQQI L
Sbjct: 438 MALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISL 497
Query: 567 STQLVKMILKIDDIRSP 583
           +TQ+V+MILKIDDIR P
Sbjct: 498 ATQMVRMILKIDDIRKP 514
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query622
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-69
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 3e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-09
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 4e-09
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 6e-09
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 7e-09
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
 Score =  752 bits (1944), Expect = 0.0
 Identities = 319/588 (54%), Positives = 426/588 (72%), Gaps = 53/588 (9%)

Query: 1   MSGGMIPGLMMDEFGRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLD 60
           M       +  DE GRPFII+++Q  +KR  G +A KSHI+AA+++A+ +KTSLGP+GLD
Sbjct: 12  MPDLSNAIVAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLD 71

Query: 61  KMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLE 120
           K+++S DG++T+TNDGATIL  M++D+EIAKL+VQLS+SQDDEIGDGTTGVVVLA ALL+
Sbjct: 72  KILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLD 131

Query: 121 QAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNL--EPLIKTAMTTLGSK 178
           QA  L+ KGIHPI+IA+GF+ AA+ A+  LE   D    + D L  + L++ A T+LGSK
Sbjct: 132 QALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSK 191

Query: 179 IINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSH 238
           I++K H + AE+AV AV+ V D +++DV+F+LIK++G+VGG + D+ L+ GV++DKDFSH
Sbjct: 192 IVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSH 251

Query: 239 PQMPKELR------DVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVD 292
           PQMPK +        VKLAILTCPFEPP+PKTKH LD+ SVE+Y++L+ YEQ+KF  M+D
Sbjct: 252 PQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMID 311

Query: 293 KVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTS 352
            VK  GA + ICQWGFDDEANHLLLQ  LPAVRWVGG                       
Sbjct: 312 DVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGG----------------------- 348

Query: 353 EKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFG 412
                                  ++E IAI T GRIVPRF++L+ +KLG    + E  FG
Sbjct: 349 ----------------------QELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFG 386

Query: 413 TTKDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAA 472
           TTKD ML+IE+ + +K VT F+RG NKMI++EA+R++HD+LCVVRNLV ++RVVYGGGAA
Sbjct: 387 TTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAA 446

Query: 473 EVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEV 532
           EV+ ++AV+ EADK   I+QYAFR FA AL++IP+ LAENSGL PI TL+ +KS+Q+KE 
Sbjct: 447 EVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEK 506

Query: 533 NPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDI 580
              +G+DC+  G+NDMK+  V++    KKQQILL+TQL +MILKID++
Sbjct: 507 ISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNV 554
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.96
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.39
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.37
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.36
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
Probab=100.00  E-value=8.7e-112  Score=942.67  Aligned_cols=519  Identities=40%  Similarity=0.633  Sum_probs=494.6

Q ss_pred             CCceeeeccchhhhhcccHHHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHH
Q psy14623         15 GRPFIILRNQQEQKRIIGNDAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMV   94 (622)
Q Consensus        15 ~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~   94 (622)
                      ++| ++++++  .++.+|.+++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++
T Consensus         3 ~~p-~~l~~~--~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~   79 (543)
T 3ruv_A            3 QQP-GVLPEN--MKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLI   79 (543)
T ss_dssp             -CC-CSSCSS--EEEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHH
T ss_pred             CCC-eeecCC--cchhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHH
Confidence            468 778887  46689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCchhhHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHh
Q psy14623         95 QLSQSQDDEIGDGTTGVVVLAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTT  174 (622)
Q Consensus        95 ~~a~~~~~~~GDGTtt~vlLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~ts  174 (622)
                      ++|++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.++++|++++++++  ..+++.|.++|+|+
T Consensus        80 e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~d~~~L~~va~ts  157 (543)
T 3ruv_A           80 EVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVG--AQDKEILTKIAMTS  157 (543)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999977654  34689999999999


Q ss_pred             hcCccchhhHHHHHHHHHHHHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEec
Q psy14623        175 LGSKIINKCHRQMAEIAVNAVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILT  254 (622)
Q Consensus       175 l~sk~~~~~~~~la~lv~~Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~  254 (622)
                      ++||+.+.++++|+++++||+.++++. ...+|+++|+|+++.|+++.||++++|++|+++|.||+|++.++|+||++++
T Consensus       158 l~sK~~~~~~~~i~~livdAv~~V~~~-~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~  236 (543)
T 3ruv_A          158 ITGKGAEKAKEKLAEIIVEAVSAVVDD-EGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLN  236 (543)
T ss_dssp             HHHTCGGGCCHHHHHHHHHHHHHHCCT-TSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEES
T ss_pred             hcccccchhHHHHHHHHHHHHHHhhcc-CCCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEc
Confidence            999999999999999999999999854 2348889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceeEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHH
Q psy14623        255 CPFEPPRPKTKHNLDVQSVEDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIEL  334 (622)
Q Consensus       255 ~~l~~~~~~~~~~~~i~~~~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~  334 (622)
                      ++|++.+++.++++.+++++++..+.+.|+++++++++++.+.|++|||++++|++.+++||.++||++++++++++|+|
T Consensus       237 ~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~  316 (543)
T 3ruv_A          237 CAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEK  316 (543)
T ss_dssp             SCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred             ccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeeccCccchhhhhhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccc
Q psy14623        335 IAIVTGGRIVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTT  414 (622)
Q Consensus       335 ia~~tGa~ii~~~~~l~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~  414 (622)
                      ||++|||++++++++                                             ++++++|+|+.|++..+|  
T Consensus       317 ia~~tGa~iis~l~~---------------------------------------------l~~~~LG~a~~v~~~~ig--  349 (543)
T 3ruv_A          317 LAKATGANVIAAIAA---------------------------------------------LSAQDLGDAGLVEERKIS--  349 (543)
T ss_dssp             HHHHHCCCEESCGGG---------------------------------------------CCGGGCEEEEEEEEEEET--
T ss_pred             HHHHhCCceeccccc---------------------------------------------CCHHHCCcccEEEEEEeC--
Confidence            999999999998877                                             778899999999999998  


Q ss_pred             cceEEEEeccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHH
Q psy14623        415 KDHMLVIEECENSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYA  494 (622)
Q Consensus       415 ~~~~~~~~~~~~~~~~TIll~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~  494 (622)
                      +++++||++|++++.|||+|||+|+.+++|.||+++|||+++|+++++|++|||||++|++|+.+|++++.++++++|++
T Consensus       350 ~~~~~~i~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~  429 (543)
T 3ruv_A          350 GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYAEGISGREQLA  429 (543)
T ss_dssp             TEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             CceEEEEECCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHH
Q psy14623        495 FRAFADALESIPLALAENSGLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMI  574 (622)
Q Consensus       495 ~~~~a~AL~~ip~~L~~NaG~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~l  574 (622)
                      +++|++||+.||++|++|||+|+.+++.+|++.|...++.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|
T Consensus       430 i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~i  509 (543)
T 3ruv_A          430 VRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEML  509 (543)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999986334578999999999999999999999999999999999999999


Q ss_pred             HhhhheecCCCC
Q psy14623        575 LKIDDIRSPNDG  586 (622)
Q Consensus       575 L~iD~iI~~~~~  586 (622)
                      ||+|++|...+.
T Consensus       510 L~id~ii~~~~~  521 (543)
T 3ruv_A          510 LRIDDVIAAEKL  521 (543)
T ss_dssp             HTCCEEEEEC--
T ss_pred             HhHHhheecCcc
Confidence            999999987654
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 622
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-39
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-35
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 5e-21
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 2e-35
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 3e-35
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 5e-35
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-31
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 8e-22
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-29
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-12
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 4e-24
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-21
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 2e-20
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-20
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 3e-18
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 4e-11
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  140 bits (354), Expect = 1e-39
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 46/214 (21%)

Query: 223 DTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSVEDYKELRKY 282
           D+ +++GV+I+KD +HP+M + +++ ++ +L    E  + +++ ++++   ED+  + + 
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60

Query: 283 EQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGR 342
           E+E    + + +      + I + G  D A H L++  + A+R V   D   IA   G R
Sbjct: 61  EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120

Query: 343 IVPRFEELTSEKLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGK 402
           IV R EEL  + +G                                              
Sbjct: 121 IVSRPEELREDDVGTG-------------------------------------------- 136

Query: 403 AGLVREISFGTTKDHMLVIEECENSKAVTIFIRG 436
           AGL+     G   ++   I +C++ KA TI +RG
Sbjct: 137 AGLLEIKKIG--DEYFTFITDCKDPKACTILLRG 168
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query622
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.97
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.96
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.96
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.95
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.93
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.88
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.5
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.49
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.44
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.33
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.28
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.23
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.22
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.09
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 97.31
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.2
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 96.18
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 95.49
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.71
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 86.05
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=1.3e-49  Score=396.56  Aligned_cols=242  Identities=44%  Similarity=0.692  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHHHHhccccCccccceeeecCCCCeEEeccHHHHhhhcccCChhHHHHHHHHhhccccccCchhhHHH
Q psy14623         34 DAIKSHIVAAKNIANTLKTSLGPKGLDKMMVSSDGDVTVTNDGATILKLMDVDHEIAKLMVQLSQSQDDEIGDGTTGVVV  113 (622)
Q Consensus        34 ~~~~~~~~a~~~la~~v~tslGP~G~~kmi~~~~g~~~ITnDG~tIl~~l~~~hP~akll~~~a~~~~~~~GDGTtt~vl  113 (622)
                      +++..|++||+.++++|++||||+||+|||+++.|+++|||||+||++++.++||.++++++++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhccccccCCCCCChHHHHHHHHHhhcCccchhhHHHHHHHHHH
Q psy14623        114 LAGALLEQAEHLLDKGIHPIRIADGFELAAQCAVKHLETIADSFPVNPDNLEPLIKTAMTTLGSKIINKCHRQMAEIAVN  193 (622)
Q Consensus       114 La~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~l~~L~~~s~~i~~~~~~~~~L~~va~tsl~sk~~~~~~~~la~lv~~  193 (622)
                      |+++||+++.+++..|+||..|++||+.|++.+++.|++++.                                      
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~--------------------------------------  123 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEIST--------------------------------------  123 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCE--------------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--------------------------------------
Confidence            999999999999999999999999999999877764432200                                      


Q ss_pred             HHHHhcccccCCCCcccEEEEEccCCCccceeEEeeEEEeecCCCCCCCcccccceEEEecCCCCCCCCCCCceeEecCH
Q psy14623        194 AVMAVADLEKRDVNFELIKVEGKVGGKLEDTMLVKGVVIDKDFSHPQMPKELRDVKLAILTCPFEPPRPKTKHNLDVQSV  273 (622)
Q Consensus       194 Av~~v~~~~~~~~~~~~I~I~~~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~n~ki~ll~~~l~~~~~~~~~~~~i~~~  273 (622)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (243)
T d1a6db1         124 --------------------------------------------------------------------------------  123 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHCCCcEEeecCcccHHHHHHHhCCeeccCccchhhh
Q psy14623        274 EDYKELRKYEQEKFASMVDKVKATGATLAICQWGFDDEANHLLLQKQLPAVRWVGGPDIELIAIVTGGRIVPRFEELTSE  353 (622)
Q Consensus       274 ~~l~~~~~~e~~~i~~~v~~l~~~g~~lVi~~~~I~~~al~~L~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~  353 (622)
                                                                                                 +    
T Consensus       124 ---------------------------------------------------------------------------~----  124 (243)
T d1a6db1         124 ---------------------------------------------------------------------------K----  124 (243)
T ss_dssp             ---------------------------------------------------------------------------E----
T ss_pred             ---------------------------------------------------------------------------c----
Confidence                                                                                       0    


Q ss_pred             hhcccccCcccccccccccCccccchhhhhcCCcccccccccCcccccccccEEEEEeccccceEEEEeccCCCceEEEE
Q psy14623        354 KLGKAGLGNQFWYNQRSHAGHTDIELIAIVTGGRIVPRFEELTSEKLGKAGLVREISFGTTKDHMLVIEECENSKAVTIF  433 (622)
Q Consensus       354 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TIl  433 (622)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (243)
T d1a6db1         125 --------------------------------------------------------------------------------  124 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHHHHHHHhcCccccCCChhhhhHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhc
Q psy14623        434 IRGGNKMIIEEAKRSIHDALCVVRNLVTENRVVYGGGAAEVSCAIAVAAEADKISSIEQYAFRAFADALESIPLALAENS  513 (622)
Q Consensus       434 l~G~t~~~l~E~~~~l~dal~~~~~~l~~g~vvpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~AL~~ip~~L~~Na  513 (622)
                                                   ..++||||++|+.+|..++++++++++++|+++++|++||+.||++|++||
T Consensus       125 -----------------------------v~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNa  175 (243)
T d1a6db1         125 -----------------------------IAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENA  175 (243)
T ss_dssp             -----------------------------CEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             -----------------------------cccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccC
Confidence                                         001148999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhhhcCCCceEEEccCCcccccccCCcccchHHHHHHHHHHHHHHHHHHhhhheec
Q psy14623        514 GLSPIETLTEVKSRQVKEVNPALGIDCMLNGTNDMKQQNVIEALRSKKQQILLSTQLVKMILKIDDIRS  582 (622)
Q Consensus       514 G~d~~~il~~L~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~L~~A~e~a~~lL~iD~iI~  582 (622)
                      |+|+.+++.+|+..|.. ++.++|+|+.+|++.||.+.|||||+.||+++|+.|+|+|++|||+|+||.
T Consensus       176 G~d~~~~i~~l~~~h~~-~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         176 GLDPIDILLKLRAEHAK-GNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             TCCHHHHHHHHHHHHHT-TCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             CCChhHHHHHHHHHHhC-CCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999875 567899999999999999999999999999999999999999999999984
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure