Psyllid ID: psy14666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEEcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHccccccccEEEEEcHHHHccccHHcccccccccccccccccccccEEcccccccEEEEEEEEEEEccHccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccc
Coil and Loop (DISEMBL)
mrngdflpTRLQAQQDAVNLVChsktrsnpennvgLLAMADSVEVLATLTSDVGRILSKLhqvqpngninfMTGIRIAHLALKHrqgknhkmRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSfgeereggkgqdeeeeevqntdrpnchynltlstslekssacetntsiltplgsipppdltslvrcphvSHVVAMITTslnvdnsdfmrngdflptRLQAQQDAVNLVChsktrsnpennvGLLAMAEK
Flexible Loop (DISEMBL)
mrngdflptRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLhqvqpngniNFMTGIRIAHLALKHRQGKNHKMRIIAfvgspvdleeRELTKLAkrlkkekvnvdivsfgeereggkgqdeeeeevqntdrpncHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHsktrsnpennvgllamaek
Low Complexity Region (SEG)
MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFgeereggkgqdeeeeeVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK
Disordered region (IsUnstruct)
*****************VNLVC**********NVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAK******VNVDIV****************************Y******************SILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVC********************
Disordered Region (DISOPRED)
MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDE***************************************************************TTSLNV*****MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE*
Disordered Region (DISEMBL)
MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG*******************DRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK
Disordered Region (DISPRO)
****DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPxxxxxxxxxxxxxxxxxxxxxVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
P55036	377	26S proteasome non-ATPase	yes	N/A	0.515	0.350	0.810	2e-59
Q58DA0	382	26S proteasome non-ATPase	yes	N/A	0.515	0.345	0.810	2e-59
O35226	376	26S proteasome non-ATPase	yes	N/A	0.515	0.351	0.810	3e-59
A2A3N6	862	Putative PIP5K1A and PSMD	no	N/A	0.492	0.146	0.755	2e-52
P55035	396	26S proteasome non-ATPase	yes	N/A	0.503	0.325	0.728	7e-52
O17453	420	26S proteasome non-ATPase	N/A	N/A	0.503	0.307	0.646	3e-45
P55034	386	26S proteasome non-ATPase	yes	N/A	0.539	0.357	0.553	1e-37
Q553E0	349	26S proteasome non-ATPase	yes	N/A	0.585	0.429	0.509	4e-35
O94444	243	26S proteasome regulatory	yes	N/A	0.507	0.534	0.496	1e-31
P38886	268	26S proteasome regulatory	yes	N/A	0.597	0.570	0.448	2e-28

>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 117/132 (88%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct: 76  HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query: 121 VNVDIVSFGEER 132
           VNVDI++FGEE 
Sbjct: 136 VNVDIINFGEEE 147

Binds and presumably selects ubiquitin-conjugates for destruction. Displays selectivity for longer polyubiquitin chains. Modulates intestinal fluid secretion.
Homo sapiens (taxid: 9606)

>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 117/132 (88%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct: 76  HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query: 121 VNVDIVSFGEER 132
           VNVDI++FGEE 
Sbjct: 136 VNVDIINFGEEE 147

Binds and presumably selects ubiquitin-conjugates for destruction. Displays selectivity for longer polyubiquitin chains. Modulates intestinal fluid secretion.

Bos taurus (taxid: 9913)

>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1

 Score =  228 bits (582), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/132 (81%), Positives = 117/132 (88%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct: 76  HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query: 121 VNVDIVSFGEER 132
           VNVDI++FGEE 
Sbjct: 136 VNVDIINFGEEE 147

Binds and presumably selects ubiquitin-conjugates for destruction.

Mus musculus (taxid: 10090)

>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 109/131 (83%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           M NGDFLPTRLQAQQDAVN VCHSKTRSNPENNVGL+ + +  EVL TLT D GRILSKL
Sbjct: 501 MGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDNDCEVLTTLTPDTGRILSKL 560

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H VQP G I F  GI +AHLALKHRQG NHK+RIIAFVG+PV+  E+ L KLAK LKKEK
Sbjct: 561 HTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEK 620

Query: 121 VNVDIVSFGEE 131
           VNVDI++FGEE
Sbjct: 621 VNVDIINFGEE 631

Has negligeable PIP5 kinase activity. Binds to ubiquitinated proteins.

Homo sapiens (taxid: 9606)

>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 94/129 (72%), Positives = 110/129 (85%)

Query: 2   RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLH 61
           RNGD+ PTRL  Q+D +NLVC +K RSNPENNVGL+ ++++VEVLATLTSD GRI SK+H
Sbjct: 17  RNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEVLATLTSDAGRIFSKMH 76

Query: 62  QVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKV 121
            VQP G IN +TGIRIAHL LKHRQGKNHKMRI+ FVGSP++ EE +L K AKRLKKEKV
Sbjct: 77  LVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKV 136

Query: 122 NVDIVSFGE 130
           NVDIVSFG+
Sbjct: 137 NVDIVSFGD 145

Binds and presumably selects ubiquitin-conjugates for destruction.

Drosophila melanogaster (taxid: 7227)

>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDF PTRLQAQ DAV L+C SK + NPEN +GLL++A++ EVL TLT+DV +I ++L
Sbjct: 16  MRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANT-EVLCTLTNDVSKIYNRL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H V+P G I F + IRIAHLAL+HRQ ++ KMRI+ F+GSP+  +E+ELT+LAKRLKKEK
Sbjct: 75  HLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEK 134

Query: 121 VNVDIVSFGE 130
           VNVDI++FGE
Sbjct: 135 VNVDIINFGE 144

Binds and presumably selects ubiquitin-conjugates for destruction.

Schistosoma mansoni (taxid: 6183)

>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVEVLATLTSDVGRILSK 59
           MRNGD+ P+RLQAQ +AVNL+C +KT+SNPEN VG+L MA   V VL T TSD+G+IL+ 
Sbjct: 16  MRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILAC 75

Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
           +H +   G IN    I+IA LALKHRQ KN + RII F GSP+  E++ L  + KRLKK 
Sbjct: 76  MHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKN 135

Query: 120 KVNVDIVSFGEEREGGKGQ 138
            V++DIV+FGE+ +  K Q
Sbjct: 136 SVSLDIVNFGEDDDEEKPQ 154

Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins. Plays a role in the growth and development via the proteasome-dependent degradation of the ABA-signaling protein ABI5/DPBF1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 104/151 (68%), Gaps = 1/151 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVEVLATLTSDVGRILSK 59
           MRNGDF P+R +AQ+DAVNL+C SKT+SNPE+ V +++MA    EVL TLT ++ +ILS 
Sbjct: 16  MRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSG 75

Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
             +++ NG I+F T ++IA LAL+HRQ  +   RIIAFVGSP+   + EL +LAKRLKK 
Sbjct: 76  AQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKN 135

Query: 120 KVNVDIVSFGEEREGGKGQDEEEEEVQNTDR 150
            V VDI++FGE  E     +    +V N D 
Sbjct: 136 GVAVDIINFGEVTENSDKLEAFINDVNNNDE 166

Binds and presumably selects ubiquitin-conjugates for destruction.

Dictyostelium discoideum (taxid: 44689)

>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSK 59
           M NGD++PTR +AQ+D V+++ + K   NPEN  GL+ + D S +VL+TLT D G+ LS 
Sbjct: 16  MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSA 75

Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
           +H +   GN  F  GI+IA LALKHR+ K  + RI+AFVGSP+  +E+ L +LAKR+KK 
Sbjct: 76  MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 135

Query: 120 KVNVDIVSFGE 130
            V +DI+  GE
Sbjct: 136 NVAIDIIHIGE 146

Protects ubiquitin chains against dissambly by deubiquitinating enzymes thereby promoting protein degradation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 1/154 (0%)

Query: 2   RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKL 60
           RNGDF  TR +AQ D+V  +  +K  SNPEN VGL++ A +   VL+T T++ G+IL+ L
Sbjct: 17  RNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGL 76

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H  Q  G ++  T ++IA L LKHRQ K    RI+AFV SP+     EL +LAK LKK  
Sbjct: 77  HDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNN 136

Query: 121 VNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCH 154
           V VDI++FGE  +  +  DE    V N      H
Sbjct: 137 VAVDIINFGEIEQNTELLDEFIAAVNNPQEETSH 170

Multiubiquitin binding protein.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
66524917	399	PREDICTED: 26S proteasome non-ATPase reg	0.507	0.325	0.854	8e-62
380016206	401	PREDICTED: 26S proteasome non-ATPase reg	0.507	0.324	0.854	8e-62
383866255	410	PREDICTED: 26S proteasome non-ATPase reg	0.507	0.317	0.854	9e-62
340725510	388	PREDICTED: 26S proteasome non-ATPase reg	0.507	0.335	0.854	2e-61
332027690	389	26S proteasome non-ATPase regulatory sub	0.507	0.334	0.847	4e-61
322788151	366	hypothetical protein SINV_03546 [Solenop	0.507	0.355	0.847	6e-61
156554405	383	PREDICTED: 26S proteasome non-ATPase reg	0.507	0.339	0.854	8e-61
307182568	414	26S proteasome non-ATPase regulatory sub	0.507	0.314	0.847	1e-60
242010811	379	26S proteasome non-ATPase regulatory sub	0.511	0.345	0.854	2e-60
261335991	365	putative proteasome 26S non ATPase subun	0.515	0.361	0.849	2e-60

>gi|66524917|ref|XP_393112.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 [Apis mellifera]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 127/131 (96%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNGN++ +TGIRIAHLALKHRQGKNHKMRI+AF+GSP++++E+EL KLAKRLKKEK
Sbjct: 75  HQVQPNGNLSLITGIRIAHLALKHRQGKNHKMRIVAFIGSPIEIDEKELVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 135 VNVDVISFGEE 145

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016206|ref|XP_003692079.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Apis florea]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 127/131 (96%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNGN++ +TGIRIAHLALKHRQGKNHKMRI+AF+GSP++++E+EL KLAKRLKKEK
Sbjct: 75  HQVQPNGNLSLITGIRIAHLALKHRQGKNHKMRIVAFIGSPIEIDEKELVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 135 VNVDVISFGEE 145

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866255|ref|XP_003708586.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Megachile rotundata]

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 127/131 (96%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNGN++ +TGIRIAHLALKHRQGKNHKMRI+AF+GSP++++E+EL KLAKRLKKEK
Sbjct: 75  HQVQPNGNLSLITGIRIAHLALKHRQGKNHKMRIVAFIGSPIEIDEKELVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 135 VNVDMISFGEE 145

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725510|ref|XP_003401112.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Bombus terrestris] gi|350403747|ref|XP_003486889.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Bombus impatiens]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 126/131 (96%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNGN+  +TGIRIAHLALKHRQGKNHKMRI+AF+GSP++++E+EL KLAKRLKKEK
Sbjct: 75  HQVQPNGNLCLITGIRIAHLALKHRQGKNHKMRIVAFIGSPIEIDEKELVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 135 VNVDVISFGEE 145

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027690|gb|EGI67758.1| 26S proteasome non-ATPase regulatory subunit 4 [Acromyrmex echinatior]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDF+PTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFVPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNG +  +TGIRIAHLALKHRQGKNHKMRI+AF+GSP+D++E+EL KLAKRLKKEK
Sbjct: 75  HQVQPNGKLALITGIRIAHLALKHRQGKNHKMRIVAFIGSPIDIDEKELVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 135 VNVDVISFGEE 145

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788151|gb|EFZ13933.1| hypothetical protein SINV_03546 [Solenopsis invicta]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDF+PTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 1   MRNGDFVPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 59

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNG +  +TGIRIAHLALKHRQGKNHKMRI+AF+GSP+D++E+EL KLAKRLKKEK
Sbjct: 60  HQVQPNGKLALITGIRIAHLALKHRQGKNHKMRIVAFIGSPIDIDEKELVKLAKRLKKEK 119

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 120 VNVDVISFGEE 130

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554405|ref|XP_001604762.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Nasonia vitripennis]

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLMTLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H+VQPNGN++ +TGIRIAHLALKHRQGKNHKMRI+AFVGSP+ ++E+E  KLAKRLKKEK
Sbjct: 75  HKVQPNGNLSLITGIRIAHLALKHRQGKNHKMRIVAFVGSPIQIDEKEAVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEE 131
           VNVDI+SFGEE
Sbjct: 135 VNVDIISFGEE 145

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182568|gb|EFN69761.1| 26S proteasome non-ATPase regulatory subunit 4 [Camponotus floridanus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 125/131 (95%), Gaps = 1/131 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDF+PTRLQAQQDAVNLVCHSKTRSNPENNVGL+ +A+ VEVLATLTSDVGRILSKL
Sbjct: 51  MRNGDFVPTRLQAQQDAVNLVCHSKTRSNPENNVGLITLAN-VEVLATLTSDVGRILSKL 109

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           HQVQPNG +  +TGIRIAHLALKHRQGKNHKMRI+AF+GSP+D++E+EL KLAKRLKKEK
Sbjct: 110 HQVQPNGKLCLITGIRIAHLALKHRQGKNHKMRIVAFIGSPIDIDEKELVKLAKRLKKEK 169

Query: 121 VNVDIVSFGEE 131
           VNVD++SFGEE
Sbjct: 170 VNVDVISFGEE 180

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010811|ref|XP_002426152.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212510199|gb|EEB13414.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/131 (85%), Positives = 124/131 (94%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDF+PTRLQAQQ+AVNLVCHSKTRSNPENNVGLL +++SVEVLATLTSDVGRI+SKL
Sbjct: 16  MRNGDFIPTRLQAQQEAVNLVCHSKTRSNPENNVGLLTLSNSVEVLATLTSDVGRIISKL 75

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H VQPNGNIN +TGIRIAHLALKHRQGKNHKMRI+ FVGSP+ +EE+E+ KLAKRLKKEK
Sbjct: 76  HGVQPNGNINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPIYVEEKEMIKLAKRLKKEK 135

Query: 121 VNVDIVSFGEE 131
           V VDIVSFGEE
Sbjct: 136 VCVDIVSFGEE 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|261335991|emb|CBH09271.1| putative proteasome 26S non ATPase subunit 4 [Heliconius melpomene]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/133 (84%), Positives = 125/133 (93%), Gaps = 1/133 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLL +A+ VEVLATLTSDVGRILSKL
Sbjct: 16  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLAN-VEVLATLTSDVGRILSKL 74

Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H+VQPNG+IN +TGIRIAHLALKHRQGKNHKMRI+ FVGSP++ +E+EL KLAKRLKKEK
Sbjct: 75  HRVQPNGDINILTGIRIAHLALKHRQGKNHKMRIVVFVGSPINTDEKELVKLAKRLKKEK 134

Query: 121 VNVDIVSFGEERE 133
           VN D+VSFGE+ E
Sbjct: 135 VNCDVVSFGEDSE 147

Source: Heliconius melpomene

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
UNIPROTKB|D4A9C9	367	Psmd4 "Protein Psmd4" [Rattus	0.5	0.348	0.812	1.8e-54
UNIPROTKB|Q58D01	316	PSMD4 "26S proteasome non-ATPa	0.5	0.405	0.812	2.1e-52
UNIPROTKB|Q58DA0	382	PSMD4 "26S proteasome non-ATPa	0.5	0.335	0.812	2.1e-52
UNIPROTKB|F1PRW0	377	PSMD4 "Uncharacterized protein	0.5	0.339	0.812	2.1e-52
UNIPROTKB|P55036	377	PSMD4 "26S proteasome non-ATPa	0.5	0.339	0.812	2.1e-52
UNIPROTKB|Q5VWC4	380	PSMD4 "26S proteasome non-ATPa	0.5	0.336	0.812	2.1e-52
UNIPROTKB|Q32YV9	377	PSMD4 "Uncharacterized protein	0.5	0.339	0.812	2.1e-52
MGI|MGI:1201670	376	Psmd4 "proteasome (prosome, ma	0.5	0.340	0.812	2.1e-52
RGD|621109	377	Psmd4 "proteasome (prosome, ma	0.5	0.339	0.812	2.1e-52
UNIPROTKB|O88321	380	Psmd4 "Proteasome (Prosome, ma	0.5	0.336	0.812	2.1e-52

UNIPROTKB|D4A9C9 Psmd4 "Protein Psmd4" [Rattus norvegicus (taxid:10116)]

 Score = 543 (196.2 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

UNIPROTKB|Q58D01 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Bos taurus (taxid:9913)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q58DA0 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Bos taurus (taxid:9913)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1PRW0 PSMD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|P55036 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Homo sapiens (taxid:9606)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|Q5VWC4 PSMD4 "26S proteasome non-ATPase regulatory subunit 4" [Homo sapiens (taxid:9606)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

UNIPROTKB|Q32YV9 PSMD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1201670 Psmd4 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4" [Mus musculus (taxid:10090)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0000502 "proteasome complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0022624 "proteasome accessory complex" evidence=IDA

RGD|621109 Psmd4 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4" [Rattus norvegicus (taxid:10116)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0005737 "cytoplasm" evidence=IDA

GO:0022624 "proteasome accessory complex" evidence=ISO

GO:0042044 "fluid transport" evidence=NAS

UNIPROTKB|O88321 Psmd4 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 4, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/128 (81%), Positives = 114/128 (89%)

Query:     1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
             MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+  EVL TLT D GRILSKL
Sbjct:    16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75

Query:    61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
             H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+  E++L KLAKRLKKEK
Sbjct:    76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135

Query:   121 VNVDIVSF 128
             VNVDI++F
Sbjct:   136 VNVDIINF 143

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q553E0	PSMD4_DICDI	No assigned EC number	0.5099	0.5859	0.4297	yes	N/A
P55035	PSMD4_DROME	No assigned EC number	0.7286	0.5039	0.3257	yes	N/A
P55034	PSMD4_ARATH	No assigned EC number	0.5539	0.5390	0.3575	yes	N/A
P55036	PSMD4_HUMAN	No assigned EC number	0.8106	0.5156	0.3501	yes	N/A
Q58DA0	PSMD4_BOVIN	No assigned EC number	0.8106	0.5156	0.3455	yes	N/A
O35226	PSMD4_MOUSE	No assigned EC number	0.8106	0.5156	0.3510	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	256
cd01452	187	cd01452, VWA_26S_proteasome_subunit, 26S proteasom	3e-77
COG5148	243	COG5148, RPN10, 26S proteasome regulatory complex,	2e-37
cd01452	187	cd01452, VWA_26S_proteasome_subunit, 26S proteasom	1e-23
COG5148	243	COG5148, RPN10, 26S proteasome regulatory complex,	5e-10
smart00327	175	smart00327, VWA, von Willebrand factor (vWF) type	7e-10
pfam13519	172	pfam13519, VWA_2, von Willebrand factor type A dom	6e-09
cd00198	161	cd00198, vWFA, Von Willebrand factor type A (vWA)	2e-08
cd01453	183	cd01453, vWA_transcription_factor_IIH_type, Transc	0.001

>gnl|CDD|238729 cd01452, VWA_26S_proteasome_subunit, 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins

 Score =  231 bits (591), Expect = 3e-77
 Identities = 95/155 (61%), Positives = 116/155 (74%), Gaps = 3/155 (1%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVEVLATLTSDVGRILSK 59
           MRNGD+ PTR QAQ DAVNL+C +KTRSNPENNVGL+ MA +S EVL TLT+D G+ILSK
Sbjct: 16  MRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSK 75

Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
           LH VQP G  NF+TGI+IA LALKHRQ KN K RI+AFVGSP++ +E++L KLAKRLKK 
Sbjct: 76  LHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKN 135

Query: 120 KVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCH 154
            V+VDI++FGE  +  +      + V   D    H
Sbjct: 136 NVSVDIINFGEIDDNTEKLTAFIDAVNGKD--GSH 168

It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association. Length = 187

>gnl|CDD|227477 COG5148, RPN10, 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]

 Score =  131 bits (330), Expect = 2e-37
 Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 1/134 (0%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSK 59
            +NGD+LPTR +AQ+DAV  +   K   NPEN +GL+ +      VL+T T   G+IL+ 
Sbjct: 16  SQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTF 75

Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
           LH ++ +G  + M  ++IA L LKHR  K  + RI+AFVGSP+   E EL +LAK+LKK 
Sbjct: 76  LHDIRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN 135

Query: 120 KVNVDIVSFGEERE 133
            V +DI+ FGE   
Sbjct: 136 NVAIDIIFFGEAAN 149

Length = 243

>gnl|CDD|238729 cd01452, VWA_26S_proteasome_subunit, 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 35/50 (70%), Positives = 43/50 (86%)

Query: 205 TSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
           T + +DNS++MRNGD+ PTR QAQ DAVNL+C +KTRSNPENNVGL+ MA
Sbjct: 6   TMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMA 55

It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association. Length = 187

>gnl|CDD|227477 COG5148, RPN10, 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255
            T + +DNS+  +NGD+LPTR +AQ+DAV  +   K   NPEN +GL+ + +
Sbjct: 5   ATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQ 56

Length = 243

>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 7/129 (5%)

Query: 8   PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL--TSDVGRILSKLHQVQP 65
             R +  ++ V  +          + VGL+  +D   VL  L  +     +L  L  +  
Sbjct: 14  GNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSY 73

Query: 66  NGNINFMTG--IRIAHLALKHRQGKNHKMR---IIAFVGSPVDLEERELTKLAKRLKKEK 120
                   G  ++ A   L  +   + +     +I       +   ++L K AK LK+  
Sbjct: 74  KLGGGTNLGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDGPKDLLKAAKELKRSG 133

Query: 121 VNVDIVSFG 129
           V V +V  G
Sbjct: 134 VKVFVVGVG 142

VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods. Length = 175

>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
           M   D  P+RL   + A+  +        P + VGL+A A S  ++  LT D   + + L
Sbjct: 12  MNATDLKPSRLTRAKAAIADL----LARLPGDRVGLIAFAGSAYLVLPLTDDRAALAAAL 67

Query: 61  HQVQ----PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRL 116
             +     P G  N    +    LAL+   G       I  +      +   L + A  L
Sbjct: 68  PALSPRIMPGGGTNLAAALA---LALRLLAGAGGGSGAIVLITD--GEDTPSLLEAASAL 122

Query: 117 KKEKVNVDIVSFGEEREGGK 136
           K+  V V ++  G +     
Sbjct: 123 KQAGVRVYVLGVGTDEGAED 142

Length = 172

>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 8   PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT-----SDVGRILSKLHQ 62
             +L   ++A+  +  S + S P + VGL+    +  V+  LT     +D+   +  L +
Sbjct: 15  GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKK 74

Query: 63  VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVN 122
               G  N    +R+A   LK  +  N +  II       +     L + A+ L+K  + 
Sbjct: 75  -GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGIT 133

Query: 123 VDIVSFGEE 131
           V  +  G++
Sbjct: 134 VYTIGIGDD 142

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Length = 161

>gnl|CDD|238730 cd01453, vWA_transcription_factor_IIH_type, Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSK 59
           M   D  P+RL      + L        NP + +G++++ +   E L  LT +  + +  
Sbjct: 16  MEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQA 75

Query: 60  LHQVQ-PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKK 118
           L   +  +G  +   G+ +A  +LKH      +  +I F  S    +   + +   +LKK
Sbjct: 76  LKTARECSGEPSLQNGLEMALESLKHMPSHGSREVLIIF-SSLSTCDPGNIYETIDKLKK 134

Query: 119 EKVNVDIVSFGEE 131
           E + V ++    E
Sbjct: 135 ENIRVSVIGLSAE 147

Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group. Length = 183

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
2x5n_A	192	Crystal Structure Of The Sprpn10 Vwa Domain Length		3e-31
2x5n_A	192	Crystal Structure Of The Sprpn10 Vwa Domain Length		1e-08
4b4t_W	268	Near-Atomic Resolution Structural Model Of The Yeas		1e-27
4b4t_W	268	Near-Atomic Resolution Structural Model Of The Yeas		8e-09

>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain Length = 192

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSK 59
           M NGD++PTR +AQ+D V+++ + K   NPEN  GL+ + D S +VL+TLT D G+ LS 
Sbjct: 15  MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSA 74
Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
           +H +   GN  F  GI+IA LALKHR+ K  + RI+AFVGSP+  +E+ L +LAKR+KK 
Sbjct: 75  MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 134
Query: 120 KVNVDIV 126
            V +DI+
Sbjct: 135 NVAIDII 141

>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255
            T + +DNS++M NGD++PTR +AQ+D V+++ + K   NPEN  GL+ + +
Sbjct: 4   ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGD 55

>pdb|4B4T|W Chain W, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 268

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 2   RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKL 60
           RNGDF  TR +AQ D+V  +  +K  SNPEN VGL++ A +   VL+T T++ G+IL+ L
Sbjct: 17  RNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGL 76
Query: 61  HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
           H  Q  G ++  T ++IA L LKHRQ K    RI+AFV SP+     EL +LAK LKK  
Sbjct: 77  HDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNN 136
Query: 121 VNVDIVSF 128
           V VDI++F
Sbjct: 137 VAVDIINF 144

>pdb|4B4T|W Chain W, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 268

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 205 TSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
           T L +DNS++ RNGDF  TR +AQ D+V  +  +K  SNPEN VGL++ A
Sbjct: 6   TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGA 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
2x5n_A	192	SPRPN10, 26S proteasome regulatory subunit RPN10;	1e-48
2x5n_A	192	SPRPN10, 26S proteasome regulatory subunit RPN10;	1e-14
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	1e-04
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	2e-04

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Length = 192

 Score =  158 bits (400), Expect = 1e-48
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 4/156 (2%)

Query: 1   MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSK 59
           M NGD++PTR +AQ+D V+++ + K   NPEN  GL+ + D+  +VL+TLT D G+ LS 
Sbjct: 15  MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSA 74

Query: 60  LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
           +H +   GN  F  GI+IA LALKHR+ K  + RI+AFVGSP+  +E+ L +LAKR+KK 
Sbjct: 75  MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 134

Query: 120 KVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHY 155
            V +DI+  GE +     Q    +   ++D  +CH 
Sbjct: 135 NVAIDIIHIGELQNESALQ-HFIDAANSSD--SCHL 167

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Length = 192

 Score = 69.7 bits (170), Expect = 1e-14
 Identities = 21/48 (43%), Positives = 35/48 (72%)

Query: 209 VDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256
           +DNS++M NGD++PTR +AQ+D V+++ + K   NPEN  GL+ + + 
Sbjct: 9   IDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDN 56

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 29  NPENNVGLLAMADSVEVLATLTSD---VGRILSKLHQVQPNGNINFMTGIRIAHLALKHR 85
           +PE  +  +  +    ++  LT D   + + L  L +V P G      G+++A+  ++  
Sbjct: 39  SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 98

Query: 86  QGKNHKMRIIAFV-GSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130
            G      IIA   G    L      K AK  +    +V  V   +
Sbjct: 99  GGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 144

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Length = 218

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 8/131 (6%)

Query: 1   MRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSK 59
           M   D  P+RL +A++    LV          + VG++  A        +TSD       
Sbjct: 24  MLAQDVQPSRLEKAKRLISRLV-----DELDNDKVGMIVFAGDAFTQLPITSDYISAKMF 78

Query: 60  LHQVQPNGNINFMTGIRIA-HLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKK 118
           L  + P+      T I  A +LA +    +    R I  +    + E     + AK   +
Sbjct: 79  LESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAKAAAE 137

Query: 119 EKVNVDIVSFG 129
           + + V ++  G
Sbjct: 138 KGIQVSVLGVG 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
4b4t_W	268	RPN10, 26S proteasome regulatory subunit RPN10; hy	100.0
2x5n_A	192	SPRPN10, 26S proteasome regulatory subunit RPN10;	99.97
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	99.64
1jey_B	565	KU80; double-strand DNA break repair, non-homologo	99.48
1q0p_A	223	Complement factor B; VON willebrand factor, MAC-1,	99.36
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	99.31
2xgg_A	178	Microneme protein 2; A/I domain, cell adhesion, hy	99.3
1ijb_A	202	VON willebrand factor; dinucleotide-binding fold,	99.25
1atz_A	189	VON willebrand factor; collagen-binding, hemostasi	99.25
4fx5_A	464	VON willebrand factor type A; structural genomics,	99.24
1n3y_A	198	Integrin alpha-X; alpha/beta rossmann fold, cell a	99.23
2b2x_A	223	Integrin alpha-1; computational design, antibody-a	99.23
1mf7_A	194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	99.22
4hqo_A	266	Sporozoite surface protein 2; malaria, gliding mot	99.17
3n2n_F	185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	99.16
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.16
2x31_A	189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	99.14
1jey_A	609	KU70; double-strand DNA break repair, non-homologo	99.1
1v7p_C	200	Integrin alpha-2; snake venom, C-type lectin, anta	99.1
1pt6_A	213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	99.09
4hqf_A	281	Thrombospondin-related anonymous protein, trap; ma	99.07
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	98.97
3hrz_D	741	Complement factor B; serine protease, glycosilated	98.92
3zqk_A	199	VON willebrand factor; blood clotting, adamts-13,	98.68
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	98.63
1mjn_A	179	Integrin alpha-L; rossmann fold, immune system; 1.	98.58
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	98.13
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	97.76
1yvr_A	538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	97.69
1jey_B	565	KU80; double-strand DNA break repair, non-homologo	97.66
2ww8_A	893	RRGA, cell WALL surface anchor family protein; IGG	97.45
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	97.17
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	96.97
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	96.86
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	96.76
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	96.7
2nvo_A	535	RO sixty-related protein, RSR; alpha helical repea	96.54
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	96.42
3efo_B	770	SEC24 related gene family, member D; copii, coat p	96.27
2iue_A	212	Pactolus I-domain; membrane protein, CD, ITC, limb	95.37
1jey_A	609	KU70; double-strand DNA break repair, non-homologo	94.37
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	93.25
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	92.98
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	91.01

>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=262.32  Aligned_cols=155  Identities=45%  Similarity=0.664  Sum_probs=147.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCc-ceEEEcCCCCHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy14666          1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAH   79 (256)
Q Consensus         1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~-a~vl~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~   79 (256)
                      |+++||.||||+++++|++.|++.++++||+++||||+|++. +.++.+||+|..+++.+|++++++|.+++++||++|.
T Consensus        16 M~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~~~G~T~l~~gL~~A~   95 (268)
T 4b4t_W           16 SRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQ   95 (268)
T ss_dssp             TSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHH
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcCcCCCCChHHHHHHHH
Confidence            899999999999999999999999999999999999999985 7899999999999999999999999999999999999


Q ss_pred             HHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccc
Q psy14666         80 LALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHY  155 (256)
Q Consensus        80 ~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~  155 (256)
                      .+|+|++++.+++|||||++|+.+++++++.++++++||+||+|+||+||.+.+..++|.++.+++|++++++|||
T Consensus        96 ~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~  171 (268)
T 4b4t_W           96 LTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHL  171 (268)
T ss_dssp             HHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEE
T ss_pred             HHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999765544443

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.1e-29  Score=217.14  Aligned_cols=152  Identities=45%  Similarity=0.767  Sum_probs=139.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecC-cceEEEcCCCCHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy14666          1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAH   79 (256)
Q Consensus         1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~-~a~vl~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~   79 (256)
                      |+++|+.||||++++++++.|+.+|+++||+++||||+|++ .+.+++|||.|+..+..+|+.+.++|.+++++||++|.
T Consensus        15 M~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~g~t~l~~aL~~A~   94 (192)
T 2x5n_A           15 MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQ   94 (192)
T ss_dssp             GGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHH
T ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCCCCchHHHHHHHHH
Confidence            89999999999999999999999999999999999999999 59999999999999999999999999999999999999


Q ss_pred             HHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccc
Q psy14666         80 LALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHY  155 (256)
Q Consensus        80 ~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~  155 (256)
                      ..|++.+++.+++|||||++++.++|++++.++++.+|+++|+|++|+||++.+..+ |..+.+++++++  +|||
T Consensus        95 ~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~--~s~~  167 (192)
T 2x5n_A           95 LALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSD--SCHL  167 (192)
T ss_dssp             HHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTT--CCEE
T ss_pred             HHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCC--ceEE
Confidence            999999877788899999988887789999999999999999999999999998877 999999998744  4555

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=3.1e-15  Score=126.57  Aligned_cols=123  Identities=17%  Similarity=0.228  Sum_probs=107.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhcccCC----CCcccHHHHHH
Q psy14666          1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP----NGNINFMTGIR   76 (256)
Q Consensus         1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l~~----~G~~sl~naL~   76 (256)
                      |...|+.|+||+.+++++..|+..    -|..+||||+|.+.+.++.++|.|...+...|+.+.+    .|.+.+..||+
T Consensus        24 M~~~d~~~~r~~~ak~~~~~~~~~----~~~~~v~lv~F~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~T~l~~al~   99 (218)
T 3ibs_A           24 MLAQDVQPSRLEKAKRLISRLVDE----LDNDKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSLISKQGTAIGEAIN   99 (218)
T ss_dssp             GGCCSSSSCHHHHHHHHHHHHHHT----CSSCEEEEEEESSSEEEEEEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHH
T ss_pred             cccccCCcCHHHHHHHHHHHHHHh----CCCCeEEEEEECCCceEeCCCCCCHHHHHHHHHhcCcccCCCCCCcHHHHHH
Confidence            677899999999999999999975    3578999999999999999999999999999988765    69999999999


Q ss_pred             HHHHHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666         77 IAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE  131 (256)
Q Consensus        77 ~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae  131 (256)
                      .|...|+..+  ...+.||+|.+|..+.+  ++.+.++.+++.+|+|.+|++|.+
T Consensus       100 ~a~~~l~~~~--~~~~~ivllTDG~~~~~--~~~~~~~~~~~~~i~v~~igig~~  150 (218)
T 3ibs_A          100 LATRSFTPQE--GVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGMP  150 (218)
T ss_dssp             HHHTTSCSCS--SCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCT
T ss_pred             HHHHHHhhCC--CCCcEEEEEcCCCCCCC--cHHHHHHHHHhcCCEEEEEEecCC
Confidence            9999887664  45678888888865433  688899999999999999999985

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*

Probab=99.48  E-value=1.7e-13  Score=134.45  Aligned_cols=131  Identities=15%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc--------------eEEEcCCCCHHHHHHhhcc-cC
Q psy14666          1 MRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV--------------EVLATLTSDVGRILSKLHQ-VQ   64 (256)
Q Consensus         1 M~n~D~-~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a--------------~vl~~lT~d~~~il~aL~~-l~   64 (256)
                      |.++|+ .||||+++++++..|++.+...+|...||||.|++.+              .++.+++....+.+..|+. +.
T Consensus        20 M~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~~~~l~~l~~~l~   99 (565)
T 1jey_B           20 MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQ   99 (565)
T ss_dssp             GGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCC
T ss_pred             hcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCCHHHHHHHHhhcc
Confidence            778888 8999999999999999999889999999999998743              2567777666778888987 77


Q ss_pred             CC-CcccHHHHHHHHHHHhccc--CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEE-EEEecCC
Q psy14666         65 PN-GNINFMTGIRIAHLALKHR--QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVD-IVSFGEE  131 (256)
Q Consensus        65 ~~-G~~sl~naL~~A~~aLkh~--p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~-vI~fGae  131 (256)
                      ++ +.+++.+||.+|...|++.  ..+...+|||||.++....+..++.++++.++++||.|+ ||+||..
T Consensus       100 ~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~g~~  170 (565)
T 1jey_B          100 PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLG  170 (565)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred             CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence            65 7899999999999999886  333356899999987655566789999999999999999 9999865

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=99.36  E-value=8.7e-12  Score=105.17  Aligned_cols=162  Identities=6%  Similarity=0.096  Sum_probs=113.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEE----cCCCCHHHHHHhhcccCC-----CCcccHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA----TLTSDVGRILSKLHQVQP-----NGNINFMTG   74 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~----~lT~d~~~il~aL~~l~~-----~G~~sl~na   74 (256)
                      +-+..++|+.+++++..|++.+...++..+||||+|.+.+..+.    +++.|...+.++|+.+..     +|.+.+..|
T Consensus        26 gSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~a  105 (223)
T 1q0p_A           26 DSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKA  105 (223)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccccccCCCCccHHHH
Confidence            34556679999999999999877778888999999999888888    666788999999999874     689999999


Q ss_pred             HHHHHHHhcccCC------CCCceEEEEEEcCCCCC--ChHHHHHHHHH----------HHhcCceEEEEEecCCccccc
Q psy14666         75 IRIAHLALKHRQG------KNHKMRIIAFVGSPVDL--EERELTKLAKR----------LKKEKVNVDIVSFGEEREGGK  136 (256)
Q Consensus        75 L~~A~~aLkh~p~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~----------lkk~nI~V~vI~fGae~~i~k  136 (256)
                      |+.|...|.....      ...++.||||.+|..+.  ||....+.++.          +++.+|.|.+|++|.+.. .+
T Consensus       106 L~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~-~~  184 (223)
T 1q0p_A          106 LQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN-QV  184 (223)
T ss_dssp             HHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCC-HH
T ss_pred             HHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCC-HH
Confidence            9999999875422      13556788888887663  67777666644          467899999999998653 22


Q ss_pred             chhHHHHhhhCCCCCCccccc--eeeeeecccchhhhhcccc
Q psy14666        137 GQDEEEEEVQNTDRPNCHYNL--TLSTSLEKSSACETNTSIL  176 (256)
Q Consensus       137 ~l~~~~~~~~~~~~~~~~~~g--~~~v~l~~~h~~~~l~~~~  176 (256)
                      .|.++.    . .+     +|  .|..+-|.+.+.+.+.+.+
T Consensus       185 ~L~~iA----~-~~-----~G~~~~~~~~~~~~L~~~~~~i~  216 (223)
T 1q0p_A          185 NINALA----S-KK-----DNEQHVFKVKDMENLEDVFYQMI  216 (223)
T ss_dssp             HHHHHS----C-CC-----TTCCCEEETTC------------
T ss_pred             HHHHHh----c-CC-----CCCceEEEcCCHHHHHHHHHHHh
Confidence            344432    1 23     45  6777777788877776654

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*

Probab=99.31  E-value=6.2e-12  Score=103.10  Aligned_cols=147  Identities=17%  Similarity=0.191  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhccc---CCCCcccHHHHHHHHHHHhcccCCCCCc
Q psy14666         15 QDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV---QPNGNINFMTGIRIAHLALKHRQGKNHK   91 (256)
Q Consensus        15 ~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l---~~~G~~sl~naL~~A~~aLkh~p~~~~~   91 (256)
                      +++++.++..+.+  |..+||||+|.+.+.++.+++.+...+..+|+.+   .++|.+.+..||+.|...|........+
T Consensus        27 ~~~~~~~~~~~~~--~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~  104 (182)
T 1shu_X           27 YNFVQQLAERFVS--PEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTS  104 (182)
T ss_dssp             HHHHHHHHHHCCC--TTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHhcC--CCceEEEEEeCCCceEEECCCCCHHHHHHHHHhcccCCCCCCchHHHHHHHHHHHHHhccCCCCC
Confidence            3444455554433  7889999999999999999999999888888765   4889999999999999998765333467


Q ss_pred             eEEEEEEcCCCCCC-hHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccccceeeeeecccchhh
Q psy14666         92 MRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACE  170 (256)
Q Consensus        92 ~rIVlfvgS~l~~D-~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~  170 (256)
                      +.+|+|.+|..+.+ +..+.+.++.+++.+|+|.+|++|...  ...|.++.    . .+     +|.|.+.-|.+.+.+
T Consensus       105 ~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~--~~~L~~ia----~-~~-----~~~~~~~~~~~~L~~  172 (182)
T 1shu_X          105 SIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFE--QAQLERIA----D-SK-----EQVFPVKGGFQALKG  172 (182)
T ss_dssp             EEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCC--HHHHHHHS----S-SG-----GGEEESSSTTHHHHH
T ss_pred             eEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCC--HHHHHHHh----C-CC-----CceEEccCCHHHHHH
Confidence            78888888875543 345677899999999999999999532  23444443    1 22     578888777777776


Q ss_pred             hhccc
Q psy14666        171 TNTSI  175 (256)
Q Consensus       171 ~l~~~  175 (256)
                      .+.++
T Consensus       173 ~~~~i  177 (182)
T 1shu_X          173 IINSI  177 (182)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}

Probab=99.30  E-value=3.9e-11  Score=99.52  Aligned_cols=127  Identities=14%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccC-CCCcccHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ-PNGNINFMTGIRIA   78 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~-~~G~~sl~naL~~A   78 (256)
                      +.+.+++|+.+++++..|++.+-...+..+||||+|.+.+.+..+++.    +...+.++|..+. .+|.+.+..||+.|
T Consensus        28 gSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a  107 (178)
T 2xgg_A           28 GSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKAC  107 (178)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCCCCCCCccHHHHHHHH
Confidence            446678999999999999987433334469999999999999999987    7899999999986 78999999999999


Q ss_pred             HHHhc-----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666         79 HLALK-----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus        79 ~~aLk-----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                      ...|.     .++  ..++.||||.+|..+ ++.++.+.++.+++.+|+|.+|++|.+..
T Consensus       108 ~~~l~~~~~g~r~--~~~~~iillTDG~~~-~~~~~~~~~~~l~~~gi~v~~igvG~~~~  164 (178)
T 2xgg_A          108 KQILFTGSRPGRE--HVPKLVIGMTDGESD-SDFRTVRAAKEIRELGGIVTVLAVGHYVA  164 (178)
T ss_dssp             HHHHHHCCCTTCT--TSCEEEEEEESSCCC-HHHHHSHHHHHHHHTTCEEEEEECC----
T ss_pred             HHHhcCcccCCCC--CCCEEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEcCCcCC
Confidence            98763     233  457788888888654 55568899999999999999999998765

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C

Probab=99.25  E-value=1.7e-10  Score=97.69  Aligned_cols=136  Identities=15%  Similarity=0.103  Sum_probs=105.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCCC--cccHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPNG--NINFMTGIRIAH   79 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~G--~~sl~naL~~A~   79 (256)
                      +.+.+++|+.+++++..|++.+--..+..+||||.|.+.+.+..+++  .|...+.++|+.+...|  .+.++.||+.|.
T Consensus        24 gSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~~T~~~~aL~~a~  103 (202)
T 1ijb_A           24 SRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTL  103 (202)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCcCCCCCcCcHHHHHHHHH
Confidence            44567799999999999998654333456999999999999989988  88999999999987644  389999999998


Q ss_pred             HHh-cc--cCCCCCceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666         80 LAL-KH--RQGKNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus        80 ~aL-kh--~p~~~~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                      ..+ ..  ++  ..++.+|||.+|..+. ++.++.+.++.+++.+|.|.+||+|.... .+.|.++.
T Consensus       104 ~~~~~~~~r~--~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~~-~~~L~~iA  167 (202)
T 1ijb_A          104 FQIFSKIDRP--EASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHAN-LKQIRLIE  167 (202)
T ss_dssp             HHTSSSCSCT--TSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSC-HHHHHHHH
T ss_pred             HHHhccCCCC--CCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcCC-HHHHHHHh
Confidence            554 42  33  4567788888886543 34578899999999999999999997543 23444443

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A

Probab=99.25  E-value=1.5e-10  Score=96.28  Aligned_cols=133  Identities=11%  Similarity=0.113  Sum_probs=103.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcC--CCCHHHHHHhhcccCC-CCcccHHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL--TSDVGRILSKLHQVQP-NGNINFMTGIRIAHL   80 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~l--T~d~~~il~aL~~l~~-~G~~sl~naL~~A~~   80 (256)
                      +.+.++||+.+++++..|++.+-......+||||.|.+.+.+..++  +.|...+..+++.+.. +|.+.+..||+.|..
T Consensus        16 gSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~   95 (189)
T 1atz_A           16 SSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVR   95 (189)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence            4566789999999999999875323344699999999999999998  8999999999999874 788999999999998


Q ss_pred             Hhcc-----cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666         81 ALKH-----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus        81 aLkh-----~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                      .|..     +|  ..++.+|+++++..+.+   +.+.++.+++.+|+|.+|++|.... .+.|..+.
T Consensus        96 ~l~~~~~g~r~--~~~~~vivltdg~~~~~---~~~~~~~~~~~gi~v~~igvG~~~~-~~~L~~iA  156 (189)
T 1atz_A           96 YLTSEMHGARP--GASKAVVILVTDVSVDS---VDAAADAARSNRVTVFPIGIGDRYD-AAQLRILA  156 (189)
T ss_dssp             HHHSCCTTCCT--TSEEEEEEEECSCCSSC---CHHHHHHHHHTTEEEEEEEESSSSC-HHHHHHHT
T ss_pred             HHhccccCCCC--CCCcEEEEEeCCCCCch---HHHHHHHHHHCCCEEEEEEcCCcCC-HHHHHHHH
Confidence            8754     33  23445777776643333   5678889999999999999998644 23455543

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}

Probab=99.24  E-value=8.9e-11  Score=113.01  Aligned_cols=147  Identities=11%  Similarity=0.087  Sum_probs=118.0

Q ss_pred             CCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--------CCHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy14666          8 PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--------SDVGRILSKLHQVQPNGNINFMTGIRIAH   79 (256)
Q Consensus         8 PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--------~d~~~il~aL~~l~~~G~~sl~naL~~A~   79 (256)
                      ++||+.+++++..|++.   ..|..++|||+|.+.+..+.+++        .|...+..+|..+.+.|.+.+..||+.|.
T Consensus        94 ~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~  170 (464)
T 4fx5_A           94 RTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAG  170 (464)
T ss_dssp             THHHHHHHHHHHHHHHH---SCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Confidence            89999999999999986   45778999999999999999986        68889999999999999999999999999


Q ss_pred             HHhcccCCCCCceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcc--cccchhHHHHhhhCCCCCCcccc
Q psy14666         80 LALKHRQGKNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEERE--GGKGQDEEEEEVQNTDRPNCHYN  156 (256)
Q Consensus        80 ~aLkh~p~~~~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~--i~k~l~~~~~~~~~~~~~~~~~~  156 (256)
                      ..|+..+  ...+.||+|.+|..+. ++..+....+ ..+.+|+|++||||.+..  ..+.|++.        +     +
T Consensus       171 ~~l~~~~--~~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~d~~~L~~IA~~--------t-----g  234 (464)
T 4fx5_A          171 RIFDTAP--SAIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDWEPKELRKIADA--------L-----L  234 (464)
T ss_dssp             HHHTTCT--TSEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSSCHHHHHHHHHH--------T-----T
T ss_pred             HHHhcCC--CCCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCccCHHHHHHHHHh--------C-----C
Confidence            9998765  4567888888887653 5555555444 457899999999997643  34444442        2     5


Q ss_pred             ceeeeeecccchhhhhc
Q psy14666        157 LTLSTSLEKSSACETNT  173 (256)
Q Consensus       157 g~~~v~l~~~h~~~~l~  173 (256)
                      |.|..+-|.+.+.+.+.
T Consensus       235 G~~~~v~d~~~L~~~f~  251 (464)
T 4fx5_A          235 GTVGIIRDPATLAEDFR  251 (464)
T ss_dssp             CCEEEESSGGGHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHH
Confidence            78999888887765543

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1

Probab=99.23  E-value=1.8e-11  Score=101.89  Aligned_cols=157  Identities=10%  Similarity=0.068  Sum_probs=113.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccC-CCCcccHHHHHHHHHHHh
Q psy14666          6 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNGNINFMTGIRIAHLAL   82 (256)
Q Consensus         6 ~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~-~~G~~sl~naL~~A~~aL   82 (256)
                      +....+...+++++.++..+.  ++..+||||+|.+.+.+..+++.  +...+.++|..+. ++|.+.+..||+.|...|
T Consensus        22 M~~~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l   99 (198)
T 1n3y_A           22 ISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRL   99 (198)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCccEEEecCccCCHHHHHHHHhcCcCCCCCchHHHHHHHHHHHH
Confidence            344467788889999998765  67889999999999888888864  2245677777764 689999999999999554


Q ss_pred             -ccc--CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCcccc
Q psy14666         83 -KHR--QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYN  156 (256)
Q Consensus        83 -kh~--p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~  156 (256)
                       +..  .....++.||+|.+|..+.|+.++.+.++.+++.+|+|.+|++|....   ..+.|.++.    . .+     +
T Consensus       100 ~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA----~-~~-----~  169 (198)
T 1n3y_A          100 FHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIA----S-KP-----S  169 (198)
T ss_dssp             TSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHS----C-SS-----S
T ss_pred             hCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHH----c-CC-----C
Confidence             421  012456778888888766577777888999999999999999998762   123444433    1 23     4


Q ss_pred             cee-eeeecccchhhhhcc
Q psy14666        157 LTL-STSLEKSSACETNTS  174 (256)
Q Consensus       157 g~~-~v~l~~~h~~~~l~~  174 (256)
                      |.| ..+-|.+.+.+++..
T Consensus       170 g~~~~~~~~~~~l~~~~~~  188 (198)
T 1n3y_A          170 QEHIFKVEDFDALKDIQNQ  188 (198)
T ss_dssp             GGGEEEESSGGGGGGGHHH
T ss_pred             cccEEEeCCHHHHHHHHHH
Confidence            777 555566666665543

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1

Probab=99.23  E-value=2.4e-10  Score=97.82  Aligned_cols=153  Identities=10%  Similarity=0.106  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHHHH-hc--
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAHLA-LK--   83 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~~a-Lk--   83 (256)
                      |+.+++++..|++.+....+..+||||+|.+.+.+..+++  .+...++++|+.+... | .+.+..||+.|... +.  
T Consensus        38 ~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~  117 (223)
T 2b2x_A           38 WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEA  117 (223)
T ss_dssp             HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGG
T ss_pred             HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHHHHHhhhccCCCCccHHHHHHHHHHHhcCcc
Confidence            7888889999987654456788999999999899888885  4678889999988654 4 49999999999987 43  


Q ss_pred             --ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCccc--------ccchhHHHHhhhCCCCCCc
Q psy14666         84 --HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREG--------GKGQDEEEEEVQNTDRPNC  153 (256)
Q Consensus        84 --h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i--------~k~l~~~~~~~~~~~~~~~  153 (256)
                        .++  ..++.+|||.+|..+ ++.++.+.++.+++.+|+|.+|++|.+..-        -+.|.++.    ...+   
T Consensus       118 ~~~~~--~~~~~iillTDG~~~-~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA----~~p~---  187 (223)
T 2b2x_A          118 RGARR--GVKKVMVIVTDGESH-DNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIA----SEPT---  187 (223)
T ss_dssp             GTCCT--TSEEEEEEEESSCCT-TGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTS----CSSG---
T ss_pred             cCCCC--CCCeEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHh----CCCc---
Confidence              233  456678888888654 555788899999999999999999986431        12333332    1112   


Q ss_pred             cccceeeeeecccchhhhhccc
Q psy14666        154 HYNLTLSTSLEKSSACETNTSI  175 (256)
Q Consensus       154 ~~~g~~~v~l~~~h~~~~l~~~  175 (256)
                        +|.|..+-|.+.+.+++.++
T Consensus       188 --~g~~~~~~~~~~L~~i~~~i  207 (223)
T 2b2x_A          188 --EKHFFNVSDELALVTIVKAL  207 (223)
T ss_dssp             --GGTEEEESSTTGGGGGHHHH
T ss_pred             --hhcEEEeCCHHHHHHHHHHH
Confidence              46777776777766655443

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G

Probab=99.22  E-value=1.6e-11  Score=102.43  Aligned_cols=157  Identities=12%  Similarity=0.125  Sum_probs=115.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccC-CCCcccHHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNGNINFMTGIRIAHL   80 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~-~~G~~sl~naL~~A~~   80 (256)
                      +-+.+++|+.++++++.|++.+-  ++..+||||.|.+.+.++.+++.  +...+..++..+. .+|.+.+..||+.|..
T Consensus        16 gSm~~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~   93 (194)
T 1mf7_A           16 GSIIPHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVR   93 (194)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSEEEEECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCceEEEecCCcCCHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Confidence            44567799999999999998755  45679999999998998888876  4557888888887 4899999999999997


Q ss_pred             Hhcc-----cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc---cccchhHHHHhhhCCCCCC
Q psy14666         81 ALKH-----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPN  152 (256)
Q Consensus        81 aLkh-----~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~  152 (256)
                      .|..     ++  ..++.+|||.+|..+.|+.++.+.++.+++.+|+|.+|++|.+..   ..+.|.++.    . .++ 
T Consensus        94 ~l~~~~~~~r~--~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA----~-~~~-  165 (194)
T 1mf7_A           94 ELFNITNGARK--NAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIA----S-KPP-  165 (194)
T ss_dssp             TTTSGGGTCCT--TSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHS----C-SSH-
T ss_pred             HhcCcccCCCC--CCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHh----C-CCC-
Confidence            6521     33  346678888888765466666778899999999999999998753   134555543    1 110 


Q ss_pred             ccccceeeeeecccchhhhhc
Q psy14666        153 CHYNLTLSTSLEKSSACETNT  173 (256)
Q Consensus       153 ~~~~g~~~v~l~~~h~~~~l~  173 (256)
                         +|.|..+=|.+.+.+++.
T Consensus       166 ---~~~~~~~~~~~~l~~~~~  183 (194)
T 1mf7_A          166 ---RDHVFQVNNFEALKTIQN  183 (194)
T ss_dssp             ---HHHEEEESSGGGGGGGHH
T ss_pred             ---cccEEEeCCHHHHHHHHH
Confidence               245555556666555543

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*

Probab=99.17  E-value=3.9e-10  Score=99.83  Aligned_cols=129  Identities=16%  Similarity=0.201  Sum_probs=106.6

Q ss_pred             CCCCCCHH-HHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCC----HHHHHHhhccc----CCCCcccHHHH
Q psy14666          4 GDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQV----QPNGNINFMTG   74 (256)
Q Consensus         4 ~D~~PnRL-~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d----~~~il~aL~~l----~~~G~~sl~na   74 (256)
                      +.+.++.+ ..++++++.|++.+.-.++..+||||.|.+.+.++.+++..    ...+..+|+.+    .++|.+.+..|
T Consensus        29 gSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~~~~A  108 (266)
T 4hqo_A           29 GSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAA  108 (266)
T ss_dssp             TTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHHCCCCSCCCHHHH
T ss_pred             CCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhccCCCCCCCHHHH
Confidence            34555667 47899999999987655677899999999999999999864    78899999988    68999999999


Q ss_pred             HHHHHHHhccc-CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666         75 IRIAHLALKHR-QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus        75 L~~A~~aLkh~-p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                      |+.|...|+.. .....++.+|||.+|..+ |+.++.+.++.+++.+|.|.+||+|....
T Consensus       109 L~~a~~~l~~~~~r~~~~~~iIllTDG~~~-d~~~~~~~a~~l~~~gi~i~~iGiG~~~~  167 (266)
T 4hqo_A          109 LDEVQKHLNDRVNREKAIQLVILMTDGVPN-SKYRALEVANKLKQRNVRLAVIGIGQGIN  167 (266)
T ss_dssp             HHHHHHHHHTTCSCTTSEEEEEEEECSCCS-CHHHHHHHHHHHHHTTCEEEEEECSSSCC
T ss_pred             HHHHHHHHhhccccCCCCeEEEEEccCCCC-CchHHHHHHHHHHHCCCEEEEEecCcccC
Confidence            99998888653 112456788888888654 88899999999999999999999998654

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=99.16  E-value=1.2e-10  Score=95.53  Aligned_cols=128  Identities=18%  Similarity=0.161  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhccc---CCCCcccHHHHHHHHHHHhcc--c
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV---QPNGNINFMTGIRIAHLALKH--R   85 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l---~~~G~~sl~naL~~A~~aLkh--~   85 (256)
                      +...+++++.++..+.  .|..+||||+|.+.+.++.+++.|...+..+|+.+   .++|.+.+..||+.|...|..  .
T Consensus        24 ~~~~~~~~~~~~~~~~--~~~~~v~lv~f~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~  101 (185)
T 3n2n_F           24 WNEIYYFVEQLAHKFI--SPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENR  101 (185)
T ss_dssp             HHHHHHHHHHHHHHCC--CTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhC--CCCcEEEEEEEecCceEEeccCCCHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHhhccc
Confidence            5666777777887763  47889999999999999999999999999988876   468999999999999998732  2


Q ss_pred             CCCCCceEEEEEEcCCCCCChH-HHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666         86 QGKNHKMRIIAFVGSPVDLEER-ELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus        86 p~~~~~~rIVlfvgS~l~~D~~-di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                      +....++.+|+|.+|..+.++. ++.+.++.+++.+|.|.+||+|.  ...+.|.++.
T Consensus       102 ~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~--~~~~~L~~iA  157 (185)
T 3n2n_F          102 QGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKD--FNETQLARIA  157 (185)
T ss_dssp             TCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSS--CCHHHHTTTS
T ss_pred             cCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEecc--CCHHHHHHHh
Confidence            2223566788888886543322 55789999999999999999993  3344555543

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.16  E-value=1.7e-10  Score=109.03  Aligned_cols=160  Identities=7%  Similarity=0.109  Sum_probs=117.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEE----cCCCCHHHHHHhhcccC-----CCCcccHHHHH
Q psy14666          5 DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA----TLTSDVGRILSKLHQVQ-----PNGNINFMTGI   75 (256)
Q Consensus         5 D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~----~lT~d~~~il~aL~~l~-----~~G~~sl~naL   75 (256)
                      -+..+||+.++++++.|++.+-..++..+||||+|++.+.+..    ++|.|...+.++|+.+.     .+|.+.+..||
T Consensus        13 SM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al   92 (497)
T 1rrk_A           13 SIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKAL   92 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccccccCccCHHHHH
Confidence            3455899999999999999887777788999999999898888    77889999999999886     46789999999


Q ss_pred             HHHHHHhcccCC------CCCceEEEEEEcCCCCC--ChHHHHHHHHHH----------HhcCceEEEEEecCCcccccc
Q psy14666         76 RIAHLALKHRQG------KNHKMRIIAFVGSPVDL--EERELTKLAKRL----------KKEKVNVDIVSFGEEREGGKG  137 (256)
Q Consensus        76 ~~A~~aLkh~p~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~l----------kk~nI~V~vI~fGae~~i~k~  137 (256)
                      +.|...|.....      ...++.+||+.+|..+.  |+....+.++.+          ++.+|+|.+|++|.+.. .+.
T Consensus        93 ~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~-~~~  171 (497)
T 1rrk_A           93 QAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN-QVN  171 (497)
T ss_dssp             HHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCC-HHH
T ss_pred             HHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccC-HHH
Confidence            999999854321      23466788888886553  444444443333          34499999999998643 233


Q ss_pred             hhHHHHhhhCCCCCCccccc--eeeeeecccchhhhhccc
Q psy14666        138 QDEEEEEVQNTDRPNCHYNL--TLSTSLEKSSACETNTSI  175 (256)
Q Consensus       138 l~~~~~~~~~~~~~~~~~~g--~~~v~l~~~h~~~~l~~~  175 (256)
                      |.++.     ..+     +|  .|..+-|.+.+.+++.+.
T Consensus       172 L~~iA-----~~~-----~g~~~~~~~~~~~~l~~~~~~~  201 (497)
T 1rrk_A          172 INALA-----SKK-----DNEQHVCKVKDMECLEDVFYQM  201 (497)
T ss_dssp             HHHHS-----CCC-----TTCCCEEETTCHHHHHHHHHHH
T ss_pred             HHHHh-----cCC-----CCcceEEEeCCHHHHhhhhhhc
Confidence            44433     123     45  677776777777777643

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}

Probab=99.14  E-value=2.7e-12  Score=106.53  Aligned_cols=135  Identities=15%  Similarity=0.229  Sum_probs=106.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecC-cceEEEcCCCCHHHHHHhhcccCCCCcccHHHHHHHHHHHh
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLAL   82 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~-~a~vl~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~~aL   82 (256)
                      +-+.++|++.+++++..|+...  ..+..+||||+|.+ .++++.++|.+...+...|..+.++|.+.+..||+.|...|
T Consensus        16 gSM~~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~~~~al~~a~~~l   93 (189)
T 2x31_A           16 GSAAVARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTA   93 (189)
T ss_dssp             TTSCC--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCCCHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence            3445789999999999999763  36788999999997 68889999999999999999999999999999999999998


Q ss_pred             cccCCCCCceEEEEEEcCCCCCCh----------HHHHHHHHHHHhcCceEEEEEecCC-cccccchhH
Q psy14666         83 KHRQGKNHKMRIIAFVGSPVDLEE----------RELTKLAKRLKKEKVNVDIVSFGEE-REGGKGQDE  140 (256)
Q Consensus        83 kh~p~~~~~~rIVlfvgS~l~~D~----------~di~~~~k~lkk~nI~V~vI~fGae-~~i~k~l~~  140 (256)
                      +........+.||+|.++..+...          .++.+.++.+++.+|.|.+|++|.. ....+.|++
T Consensus        94 ~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA~  162 (189)
T 2x31_A           94 KQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRPNPALVDLAR  162 (189)
T ss_dssp             HTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSSCSSSCSTTT
T ss_pred             HhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence            765433457788888888655321          1334567788999999999999986 445556665

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B

Probab=99.10  E-value=7.3e-10  Score=109.86  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=101.3

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc----------eEEEcCCCCHHHHHHhhccc-----
Q psy14666          1 MRNGD--FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV----------EVLATLTSDVGRILSKLHQV-----   63 (256)
Q Consensus         1 M~n~D--~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a----------~vl~~lT~d~~~il~aL~~l-----   63 (256)
                      |.+.|  ..||||+++++++..|++.+.-.+|...||||.|+..+          .++.+++.--...+..|.++     
T Consensus        48 M~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ik~l~~l~~~~~  127 (609)
T 1jey_A           48 MFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQG  127 (609)
T ss_dssp             GGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHH
T ss_pred             HcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHHHHHHHHHhhccc
Confidence            66677  58999999999999999998888999999999999865          35555532112233333332     


Q ss_pred             --------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCC--Ch---HHHHHHHHHHHhcCceEEEEEecC
Q psy14666         64 --------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--EE---RELTKLAKRLKKEKVNVDIVSFGE  130 (256)
Q Consensus        64 --------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~--D~---~di~~~~k~lkk~nI~V~vI~fGa  130 (256)
                              ..++.+++.+||.+|...|++...+...+|||||.++....  ++   ..+...++.|++.||+|++|++|.
T Consensus       128 ~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~  207 (609)
T 1jey_A          128 QKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKK  207 (609)
T ss_dssp             HHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCC
T ss_pred             chhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCC
Confidence                    22467999999999999998764333578999999875543  32   268889999999999999999998


Q ss_pred             Cc
Q psy14666        131 ER  132 (256)
Q Consensus       131 e~  132 (256)
                      +.
T Consensus       208 ~~  209 (609)
T 1jey_A          208 PG  209 (609)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A

Probab=99.10  E-value=2.7e-09  Score=89.53  Aligned_cols=117  Identities=12%  Similarity=0.136  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHHHH-hcc-
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAHLA-LKH-   84 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~~a-Lkh-   84 (256)
                      |+.+++++..|++.+--.++..+||||+|.+.+.+..+++  .+...++++|+.+.+. | .+.+..||+.|... +.. 
T Consensus        22 ~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~  101 (200)
T 1v7p_C           22 WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAA  101 (200)
T ss_dssp             HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHHhhhccCCCCCcHHHHHHHHHHhhcccc
Confidence            7888999999998654444577999999999999999998  5788899999998764 4 59999999999986 432 


Q ss_pred             ---cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecC
Q psy14666         85 ---RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE  130 (256)
Q Consensus        85 ---~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGa  130 (256)
                         ++  ..++.+|||.+|..+ |+.++.+.++.+++.+|.|.+|++|.
T Consensus       102 ~g~r~--~~~~~ivllTDG~~~-~~~~~~~~~~~~~~~gi~i~~igvg~  147 (200)
T 1v7p_C          102 SGGRR--SATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLG  147 (200)
T ss_dssp             GTCCT--TSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECH
T ss_pred             cCCCC--CCCeEEEEEccCCCC-CcccHHHHHHHHHHCCCEEEEEEecc
Confidence               33  456678888888754 66677889999999999999999953

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A

Probab=99.09  E-value=1.4e-09  Score=92.21  Aligned_cols=152  Identities=10%  Similarity=0.094  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHHHHh-c--
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAHLAL-K--   83 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~~aL-k--   83 (256)
                      |+.++++++.|++.+--..+..+||||+|.+.+.+..+++  .+...++++|..+.+. | .+.+..||+.|...| .  
T Consensus        23 ~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~  102 (213)
T 1pt6_A           23 WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA  102 (213)
T ss_dssp             HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHhcCcc
Confidence            7888888888887643346778999999999999888885  4678889999988754 5 489999999999874 4  


Q ss_pred             --ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCccc--------ccchhHHHHhhhCCCCCCc
Q psy14666         84 --HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREG--------GKGQDEEEEEVQNTDRPNC  153 (256)
Q Consensus        84 --h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i--------~k~l~~~~~~~~~~~~~~~  153 (256)
                        .++  ..++.+|||.+|..+ ++.++.+.++.+++.+|.|.+|++|....-        -+.|.++.    ...+   
T Consensus       103 ~~~r~--~~~~~iillTDG~~~-~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA----~~~~---  172 (213)
T 1pt6_A          103 RGARR--GVKKVMVIVTDGESH-DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIA----SEPT---  172 (213)
T ss_dssp             GTCCT--TCEEEEEEEESSCCS-CSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHS----CSSH---
T ss_pred             cCCCC--CCCeEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHh----CCCc---
Confidence              233  456678888888654 455788899999999999999999975320        13333332    1112   


Q ss_pred             cccceeeeeecccchhhhhcc
Q psy14666        154 HYNLTLSTSLEKSSACETNTS  174 (256)
Q Consensus       154 ~~~g~~~v~l~~~h~~~~l~~  174 (256)
                        +|.|..+=|.+.+.+++..
T Consensus       173 --~g~~~~~~~~~~l~~i~~~  191 (213)
T 1pt6_A          173 --EKHFFNVSDELALVTIVKT  191 (213)
T ss_dssp             --HHHEEEESSGGGGGGGHHH
T ss_pred             --hhcEEEeCCHHHHHHHHHH
Confidence              4666666666666655544

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A

Probab=99.07  E-value=2.1e-09  Score=95.37  Aligned_cols=128  Identities=12%  Similarity=0.175  Sum_probs=102.1

Q ss_pred             CCCCCCHH-HHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCC----HHHHHHhhcccC----CCCcccHHHH
Q psy14666          4 GDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQVQ----PNGNINFMTG   74 (256)
Q Consensus         4 ~D~~PnRL-~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d----~~~il~aL~~l~----~~G~~sl~na   74 (256)
                      +.+..+.+ +.+++++..|++.+-......+||||+|.+.+..+.+++.+    ...++.+|+.+.    ++|.+.++.|
T Consensus        32 gSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~~~~~G~T~~~~a  111 (281)
T 4hqf_A           32 GSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLSTNLPYGKTSLTDA  111 (281)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHTTGGGCSCCHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhccCCCCCccHHHH
Confidence            34455555 88999999999876555556799999999988888777754    788888888774    6899999999


Q ss_pred             HHHHHHHhcccCC-CCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCc
Q psy14666         75 IRIAHLALKHRQG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER  132 (256)
Q Consensus        75 L~~A~~aLkh~p~-~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~  132 (256)
                      |+.|...|..... ...++.||||.+|..+ |+.++.+.++.|++.+|.|.+||+|...
T Consensus       112 L~~a~~~l~~~~~r~~~~~~iillTDG~~~-d~~~~~~~~~~l~~~gv~i~~igiG~~~  169 (281)
T 4hqf_A          112 LLQVRKHLNDRINRENANQLVVILTDGIPD-SIQDSLKESRKLSDRGVKIAVFGIGQGI  169 (281)
T ss_dssp             HHHHHHHHHTSCCCTTCEEEEEEEESSCCS-CHHHHHHHHHHHHHTTCEEEEEEESSSC
T ss_pred             HHHHHHHHHhccCCCCCCEEEEEEecCCCC-CcHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence            9999888764321 2346677888888654 7889999999999999999999999874

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=98.97  E-value=1.9e-09  Score=102.55  Aligned_cols=162  Identities=10%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccCCC-----CcccHHHHH
Q psy14666          5 DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQPN-----GNINFMTGI   75 (256)
Q Consensus         5 D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~~~-----G~~sl~naL   75 (256)
                      .+..++++.+++++..|++.+...++..+||||+|++.+.++.+++.    |...+..+|+.+...     |.+.+..||
T Consensus        21 SM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL  100 (509)
T 2odp_A           21 SVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAAL  100 (509)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhcccccCCCCCCccHHHHH
Confidence            34556889999999999988766678889999999999999999886    899999999998765     889999999


Q ss_pred             HHHHHHhcccC---C------CCCceEEEEEEcCCCCC--ChHHHHHHHHHHH------hcCceEEEEEecCCcccccch
Q psy14666         76 RIAHLALKHRQ---G------KNHKMRIIAFVGSPVDL--EERELTKLAKRLK------KEKVNVDIVSFGEEREGGKGQ  138 (256)
Q Consensus        76 ~~A~~aLkh~p---~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~lk------k~nI~V~vI~fGae~~i~k~l  138 (256)
                      +.|...|+...   .      ...++.||||.+|..+.  ++..+.+.++.+.      +.+|.|.+||+|......+.|
T Consensus       101 ~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L  180 (509)
T 2odp_A          101 NSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWREL  180 (509)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHH
T ss_pred             HHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHH
Confidence            99998885311   0      02346778888886553  4554444444432      889999999999873333455


Q ss_pred             hHHHHhhhCCCCCCccccce--eeeeecccchhhhhcccc
Q psy14666        139 DEEEEEVQNTDRPNCHYNLT--LSTSLEKSSACETNTSIL  176 (256)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~g~--~~v~l~~~h~~~~l~~~~  176 (256)
                      .++.    . .+     +|.  |..+=|.+.+.+++...+
T Consensus       181 ~~iA----~-~~-----~G~~~~~~~~~~~~l~~~~~~i~  210 (509)
T 2odp_A          181 NELG----S-KK-----DGERHAFILQDTKALHQVFEHML  210 (509)
T ss_dssp             HHHS----C-CC-----TTCCCEEEESSHHHHHHHHHHHE
T ss_pred             Hhhc----c-CC-----CCceeeEEecCHHHHHHHHHhhh
Confidence            5543    1 22     355  555666777777765553

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=98.92  E-value=4.5e-09  Score=104.00  Aligned_cols=129  Identities=9%  Similarity=0.155  Sum_probs=102.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccC-----CCCcccHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ-----PNGNINFMTG   74 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~-----~~G~~sl~na   74 (256)
                      +.+.+++|+.+++++..|++.+.......+||||+|++.+.++.+++.    |...++++|+.+.     .+|.+.+..|
T Consensus       254 gSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~~ggT~~~~a  333 (741)
T 3hrz_D          254 GSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKA  333 (741)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHH
T ss_pred             CcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhcccccccCCCChHHHHH
Confidence            345567899999999999998766566679999999999999999997    9999999999987     7899999999


Q ss_pred             HHHHHHHhcc-----cCC-CCCceEEEEEEcCCCC--CChHHHHHHHH----------HHHhcCceEEEEEecCCc
Q psy14666         75 IRIAHLALKH-----RQG-KNHKMRIIAFVGSPVD--LEERELTKLAK----------RLKKEKVNVDIVSFGEER  132 (256)
Q Consensus        75 L~~A~~aLkh-----~p~-~~~~~rIVlfvgS~l~--~D~~di~~~~k----------~lkk~nI~V~vI~fGae~  132 (256)
                      |+.|...|..     +.. ...++.||||.+|..+  .||....+.++          .+++.+|+|.+||+|.+.
T Consensus       334 L~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~  409 (741)
T 3hrz_D          334 LQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLV  409 (741)
T ss_dssp             HHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSC
T ss_pred             HHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcC
Confidence            9999999831     111 1245568888888554  25655554333          668899999999999743

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*

Probab=98.68  E-value=8.5e-08  Score=80.72  Aligned_cols=128  Identities=15%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccCCC-C-cccHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQPN-G-NINFMTGIRIAH   79 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~~~-G-~~sl~naL~~A~   79 (256)
                      +-+.+++|+.++++++.|++.+--..+..+||||.+.+.+....+++.  +...+.++|+.+... | .+.+..||+.|.
T Consensus        32 ~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~~T~~~~aL~~a~  111 (199)
T 3zqk_A           32 DKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIRYQGGNRTNTGLALRYLS  111 (199)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCCCCCCSCCCHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCcCCCCCcChHHHHHHHHH
Confidence            445677899999999999998654556779999999999999999885  899999999998654 4 499999999988


Q ss_pred             HHhc-----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666         80 LALK-----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus        80 ~aLk-----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                      ..+.     .|+  ..++.+|++.+|....+..+       + +.+|+|..||+|.... .+.|.++.
T Consensus       112 ~~l~~~~~g~r~--~~~~~iillTDG~~~d~v~~-------~-~~~v~v~~iGiG~~~~-~~~L~~iA  168 (199)
T 3zqk_A          112 DHSFLVSQGDRE--QAPNLVYMVTGNPASDEIKR-------L-PGDIQVVPIGVGPNAN-VQELERIG  168 (199)
T ss_dssp             CCCTCGGGTCCT--TSCEEEEEEECSCCSSCCCC-------C-CTTEEEEEEEESTTCC-HHHHHHHH
T ss_pred             HHhhCcccCCCC--CCCeEEEEEeCCCCchHHHH-------H-hCCCEEEEEEcCCCCC-HHHHHHHh
Confidence            7542     133  35667888888875433221       1 3799999999997433 34566654

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=98.63  E-value=5.4e-08  Score=102.47  Aligned_cols=126  Identities=14%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhccc-CCCCcccHHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQV-QPNGNINFMTGIRIAHL   80 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l-~~~G~~sl~naL~~A~~   80 (256)
                      +.+.+++|+.++++++.|++.+-  .+..+||||.+.+.+.+..+++.  +...+.++++.+ ..+|.+.+..||+.|..
T Consensus       141 gSm~~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~~~gG~T~~g~AL~~a~~  218 (1095)
T 3k6s_A          141 GSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVH  218 (1095)
T ss_dssp             TTSCSHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCCCCCSCBCHHHHHHHHHT
T ss_pred             CCCChhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhhcccCCChHHHHHHHHHH
Confidence            55778999999999999998754  23469999999999999999985  666778888887 56789999999999987


Q ss_pred             Hhccc---CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666         81 ALKHR---QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE  131 (256)
Q Consensus        81 aLkh~---p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae  131 (256)
                      .+...   .....++.|||+.+|..+.|+.++.+.++.+++.+|.|.+||+|..
T Consensus       219 ~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~  272 (1095)
T 3k6s_A          219 RLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLA  272 (1095)
T ss_dssp             TTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSG
T ss_pred             hhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccc
Confidence            65321   1123566788888987656888889999999999999999999986

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...

Probab=98.58  E-value=2.4e-07  Score=76.70  Aligned_cols=118  Identities=12%  Similarity=0.073  Sum_probs=85.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcc-cceeeeeecCcceEEEcCCCCH--HHHHHhhcccC-CCCcccHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPE-NNVGLLAMADSVEVLATLTSDV--GRILSKLHQVQ-PNGNINFMTGIRIAH   79 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~-sqVGIVt~~~~a~vl~~lT~d~--~~il~aL~~l~-~~G~~sl~naL~~A~   79 (256)
                      +.+.+++|+.++++++.+++.+   .|. .+||||.+.+.+.+..+++...  ..+..+++.+. .+|.+.++.||+.|.
T Consensus        13 ~Sm~~~~~~~~k~~~~~~~~~l---~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~~~~g~T~~~~aL~~a~   89 (179)
T 1mjn_A           13 MSLQPDEFQKILDFMKDVMKKC---SNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVA   89 (179)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT---TTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh---CCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcccCCCCChHHHHHHHHH
Confidence            4466778999999999999985   244 4999999999999888887522  12344455443 368899999999998


Q ss_pred             HH-hc----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666         80 LA-LK----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus        80 ~a-Lk----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                      .. +.    .|+  ..++.+||+.+|..+.+. ..      .++.+|.|.+||+|....
T Consensus        90 ~~~~~~~~g~r~--~~~~~iillTDG~~~~~~-~~------~~~~~i~i~~igvG~~~~  139 (179)
T 1mjn_A           90 TEVFREELGARP--DATKVLIIITDGEATDSG-NI------DAAKDIIRYIIGIGKHFQ  139 (179)
T ss_dssp             HHTSSGGGTCCT--TSEEEEEEEESSCCSSCS-CC------GGGTTSEEEEEEESGGGC
T ss_pred             HHhcccccCCCC--CCCeEEEEEcCCCCCCCc-ch------HHHCCCEEEEEEcccccc
Confidence            64 43    233  456778888888765332 21      267899999999998754

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=98.13  E-value=2.1e-06  Score=76.83  Aligned_cols=139  Identities=14%  Similarity=0.189  Sum_probs=89.5

Q ss_pred             CceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCc-------ccccchhHHHHhhhCCCCCCccccceeeee
Q psy14666         90 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER-------EGGKGQDEEEEEVQNTDRPNCHYNLTLSTS  162 (256)
Q Consensus        90 ~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~-------~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~  162 (256)
                      ..+.|||+.+|..++.. +..+.++.+++.||+|++||+|...       ...+.+++.        |     ||.|..+
T Consensus         9 ~~k~iillTDG~~~~g~-~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~--------t-----GG~yf~a   74 (242)
T 3rag_A            9 TIRQILVITDGCSNIGP-DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADA--------G-----GGMCRIV   74 (242)
T ss_dssp             CEEEEEEEESSCCCSSS-CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHH--------T-----TSCEEEE
T ss_pred             CccEEEEEccCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHh--------c-----CCeEEEe
Confidence            46688899999876544 6788899999999999999997643       223344442        2     5788887


Q ss_pred             ecccchhhhhcccc-----------------CCCCCCCCCCCccceecCCccc-----cc------eeeeeEeeecCCCc
Q psy14666        163 LEKSSACETNTSIL-----------------TPLGSIPPPDLTSLVRCPHVSH-----VV------AMITTSLNVDNSDF  214 (256)
Q Consensus       163 l~~~h~~~~l~~~~-----------------~pp~~~~~~~~~~lv~mgfp~~-----~~------~~~~~~~~~dns~~  214 (256)
                       +...+.+.+...+                 ..-+.       ++=.+++..+     ++      .+.-+++.+|.|..
T Consensus        75 -~~~~l~~~~~~~t~~~~~~t~q~~v~~~~~~i~g~-------~~~~l~p~~r~~~~~~~~~l~e~~~~~vvfLVDtSgS  146 (242)
T 3rag_A           75 -QPADISATAQMMTHQTMQMTLQQVVNQELLAVMGK-------STEDLPPADRARVMQVVEKLEDEVALHLVVCLDTSAS  146 (242)
T ss_dssp             -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------CGGGSCHHHHHHHHHHHHHHHHHSCEEEEEEEECSGG
T ss_pred             -eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------ccccCCcchhcchhhhhhhhcccCCCCEEEEEECccc
Confidence             5666554422111                 00010       1222222221     11      55688889999999


Q ss_pred             ccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666        215 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK  256 (256)
Q Consensus       215 ~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~  256 (256)
                      |.     + ||++=.+|+.-+..+-.....++.|||++++|+
T Consensus       147 M~-----~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~  182 (242)
T 3rag_A          147 MR-----D-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK  182 (242)
T ss_dssp             GT-----T-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred             HH-----H-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence            96     2 798888887666554333345899999999874

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=97.76  E-value=0.00013  Score=74.36  Aligned_cols=120  Identities=22%  Similarity=0.241  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceE------------------------------EEcC---------
Q psy14666          9 TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------------LATL---------   49 (256)
Q Consensus         9 nRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~v------------------------------l~~l---------   49 (256)
                      .++++.++++..+++.   ..|...||||+|.+...+                              +..+         
T Consensus       146 ~~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~  222 (769)
T 2nut_A          146 EDLQALKESMQMSLSL---LPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGP  222 (769)
T ss_dssp             HHHHHHHHHHHHHHTT---SCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHh---CCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccc
Confidence            3688888999888864   556679999999875433                              1100         


Q ss_pred             ---------------CCCHHHHHHhhcccCC---------CCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCC
Q psy14666         50 ---------------TSDVGRILSKLHQVQP---------NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE  105 (256)
Q Consensus        50 ---------------T~d~~~il~aL~~l~~---------~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D  105 (256)
                                     +.....+.+.|+.|..         .+...++.||+.|...|+..- .+.+.||++|.+|+-+..
T Consensus       223 ~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~-~~~GGrI~~F~sg~pt~G  301 (769)
T 2nut_A          223 QVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF-PNTGARIMMFIGGPATQG  301 (769)
T ss_dssp             ------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS-CSSCCEEEEEESSCCCSS
T ss_pred             cccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc-cCCCcEEEEEeCCCCCCC
Confidence                           0111223344444433         567899999999999998531 135779999999876532


Q ss_pred             hHH------------------------------HHHHHHHHHhcCceEEEEEecCCc
Q psy14666        106 ERE------------------------------LTKLAKRLKKEKVNVDIVSFGEER  132 (256)
Q Consensus       106 ~~d------------------------------i~~~~k~lkk~nI~V~vI~fGae~  132 (256)
                      ||.                              -.++++++.+++|.||+..++...
T Consensus       302 pG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~  358 (769)
T 2nut_A          302 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQ  358 (769)
T ss_dssp             SSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSC
T ss_pred             CCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCc
Confidence            221                              134899999999999999999764

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A

Probab=97.69  E-value=5e-05  Score=73.85  Aligned_cols=119  Identities=12%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             CCCCCCCCCHHHHHHHH--HHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCH--HHHHHhhcccCCCCcccHHHHHH
Q psy14666          1 MRNGDFLPTRLQAQQDA--VNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDV--GRILSKLHQVQPNGNINFMTGIR   76 (256)
Q Consensus         1 M~n~D~~PnRL~aq~~a--~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~--~~il~aL~~l~~~G~~sl~naL~   76 (256)
                      |..+|.. +|+.+ +++  +-.|+.    ..+..+||||+|.+. ...++++.+.  ...+..|..+ ++|.+++..+|.
T Consensus       381 M~~~~~~-~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~-~~~~~~t~~~~l~~~l~~l~~~-~~GgT~i~~aL~  452 (538)
T 1yvr_A          381 MNQRVLG-SILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDE-MLPCPITVNMLLHEVVEKMSDI-TMGSTDCALPML  452 (538)
T ss_dssp             GGSBSTT-SSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSS-EECCSCCTTSCHHHHHHHHTTC-CCSCCCTTHHHH
T ss_pred             cCCCCCC-CcHHH-HHHHHHHHHHH----hccCCceEEEEECCC-ceEcCCCCcccHHHHHHHHhcC-CCCCCcHHHHHH
Confidence            4455554 56666 443  444443    345678999999873 3345666543  3334444433 688999999999


Q ss_pred             HHHHHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhc-C--ceEEEEEecCCcc
Q psy14666         77 IAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-K--VNVDIVSFGEERE  133 (256)
Q Consensus        77 ~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~-n--I~V~vI~fGae~~  133 (256)
                      .|...    .  .....|||++|+..+.+..++.+.++++++. |  |++.+|++|....
T Consensus       453 ~a~~~----~--~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~  506 (538)
T 1yvr_A          453 WAQKT----N--TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGF  506 (538)
T ss_dssp             HHHHT----T--CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSE
T ss_pred             HHHhc----c--CCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCCC
Confidence            98754    1  2346899999986553333455666666544 5  5558999997644

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*

Probab=97.66  E-value=2.2e-05  Score=76.96  Aligned_cols=54  Identities=9%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             eeeEeeecCCCcccCCCC-CcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666        203 ITTSLNVDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK  256 (256)
Q Consensus       203 ~~~~~~~dns~~~~~g~~-~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~  256 (256)
                      .++|+++|.|++|+++|+ -||||+++.++++.+++.|+.++|+..|||+.+|++
T Consensus         8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~   62 (565)
T 1jey_B            8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD   62 (565)
T ss_dssp             EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred             eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence            678999999999999998 899999999999999999999999999999999874

>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}

Probab=97.45  E-value=0.00032  Score=72.65  Aligned_cols=93  Identities=20%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceE---------------------------------------EEcC
Q psy14666          9 TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV---------------------------------------LATL   49 (256)
Q Consensus         9 nRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~v---------------------------------------l~~l   49 (256)
                      +||+.+++|++.|++ ++..+|..+||||+|++.+..                                       ..+|
T Consensus       246 ~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpL  324 (893)
T 2ww8_A          246 RRAERAGEATRSLID-KITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLFWNYDQTSFTTNTKDYSYLKL  324 (893)
T ss_dssp             CHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTTSCTTCCEEEEECCBCCEEEE
T ss_pred             hHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            499999999999995 555678899999999975421                                       1356


Q ss_pred             CCCHHHH---HHhhcc----------cCCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCC
Q psy14666         50 TSDVGRI---LSKLHQ----------VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV  102 (256)
Q Consensus        50 T~d~~~i---l~aL~~----------l~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l  102 (256)
                      |.|...+   ...|..          +.+.|.+.++.||..|...|+.......++.|||+.+|.-
T Consensus       325 T~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~p  390 (893)
T 2ww8_A          325 TNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVP  390 (893)
T ss_dssp             ECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCC
T ss_pred             cCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCC
Confidence            7777444   366654          3347899999999999999974211245667777777743

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=97.17  E-value=0.0023  Score=65.57  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEE------------------------------------EcCCCCHH
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL------------------------------------ATLTSDVG   54 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl------------------------------------~~lT~d~~   54 (256)
                      +++.++++..-++..=+.+|...||||+|.+...+.                                    +++.....
T Consensus       206 l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~  285 (810)
T 1pcx_A          206 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ  285 (810)
T ss_dssp             HHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHHH
Confidence            556667766666432222335799999997743322                                    11222233


Q ss_pred             HHHHhhccc------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHH--------------------
Q psy14666         55 RILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERE--------------------  108 (256)
Q Consensus        55 ~il~aL~~l------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~d--------------------  108 (256)
                      .+...|+.+      ...++..++.||+.|...|+.     .+.||++|.+|+-+..||.                    
T Consensus       286 ~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-----~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~  360 (810)
T 1pcx_A          286 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLL  360 (810)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSSTTCCCC-----------------
T ss_pred             HHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-----cCCEEEEEecCCCCCCCCcccccccccccCcccchhhhc
Confidence            333444433      236789999999999999984     3569999999875532221                    


Q ss_pred             ------HHHHHHHHHhcCceEEEEEecCCc
Q psy14666        109 ------LTKLAKRLKKEKVNVDIVSFGEER  132 (256)
Q Consensus       109 ------i~~~~k~lkk~nI~V~vI~fGae~  132 (256)
                            -.++++++.+++|.||+..++...
T Consensus       361 ~~a~~fY~~la~~~~~~gi~VDlF~~s~~~  390 (810)
T 1pcx_A          361 SCQDSFYKNFTIDCSKVQITVDLFLASEDY  390 (810)
T ss_dssp             ---CCHHHHHHHHHHHTTEEEEEEEEESSC
T ss_pred             ccchHHHHHHHHHHHHCCeEEEEEEccCCc
Confidence                  135789999999999999999763

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=96.97  E-value=0.006  Score=63.50  Aligned_cols=117  Identities=14%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceE------------------------------------EEcCCCCHH
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------------------LATLTSDVG   54 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~v------------------------------------l~~lT~d~~   54 (256)
                      +++.++++...++..=+.+|...||||+|.+...+                                    ++++.....
T Consensus       322 l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~  401 (926)
T 1m2v_B          322 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ  401 (926)
T ss_dssp             HHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccccccccCCCcccccccHHHHHH
Confidence            55666666666543222223479999999763322                                    112233344


Q ss_pred             HHHHhhccc------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChH----------------H----
Q psy14666         55 RILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER----------------E----  108 (256)
Q Consensus        55 ~il~aL~~l------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~----------------d----  108 (256)
                      .+...|+.|      ....+..++.||+.|...|+.     .+.||++|.+|+-+..+|                .    
T Consensus       402 ~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-----~GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll  476 (926)
T 1m2v_B          402 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLL  476 (926)
T ss_dssp             HHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHT
T ss_pred             HHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-----hCCEEEEEecCCCCCCCCcccccccccccCcccchhhhc
Confidence            444444443      235789999999999999985     366999999987542222                1    


Q ss_pred             ------HHHHHHHHHhcCceEEEEEecCCc
Q psy14666        109 ------LTKLAKRLKKEKVNVDIVSFGEER  132 (256)
Q Consensus       109 ------i~~~~k~lkk~nI~V~vI~fGae~  132 (256)
                            -.++++++.+++|.||+..++..-
T Consensus       477 ~~a~~FYk~LA~~~~~~gisVDlF~~s~~~  506 (926)
T 1m2v_B          477 SCQDSFYKNFTIDCSKVQITVDLFLASEDY  506 (926)
T ss_dssp             SCSSTHHHHHHHHHHHHTEEEEEEEEESSC
T ss_pred             cchHHHHHHHHHHHHHcCeEEEEEEccCCC
Confidence                  146799999999999999999763

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=96.86  E-value=0.014  Score=59.39  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             CCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChH---------------HH---------------HHHHHH
Q psy14666         66 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER---------------EL---------------TKLAKR  115 (256)
Q Consensus        66 ~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~---------------di---------------~~~~k~  115 (256)
                      ..+..++.||++|...|+..- .+.+.||++|.+|+-+..||               |+               .+++++
T Consensus       257 ~~~~~~G~Al~~A~~ll~~~~-~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~  335 (768)
T 1m2o_A          257 RPLRATGSALNIASLLLQGCY-KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQR  335 (768)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHC-TTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHhhcc-CCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHH
Confidence            355789999999999998531 13577999999987652111               11               357889


Q ss_pred             HHhcCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhccccC
Q psy14666        116 LKKEKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILT  177 (256)
Q Consensus       116 lkk~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~~~~~  177 (256)
                      +.+++|.||+..++...-   .-+.|++.|       +|..+    |.-..+.+.|++-+...+.
T Consensus       336 ~~~~gi~VDlF~~~~~~~dla~l~~l~~~T-------GG~v~----~y~~f~~~~~~~~l~r~l~  389 (768)
T 1m2o_A          336 VAANGHTVDIFAGCYDQIGMSEMKQLTDST-------GGVLL----LTDAFSTAIFKQSYLRLFA  389 (768)
T ss_dssp             HHHHTCEEEEEEECSSCCSHHHHHHHHHHH-------TCCEE----EESCTTSHHHHHHHHHTTC
T ss_pred             HHHCCeEEEEEEccCCccChHHHhhHhhcC-------CceEE----EcCCCchHHHHHHHHHHHh
Confidence            999999999999997543   234444443       22222    2233444556666665554

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=96.76  E-value=0.0025  Score=56.83  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHHHhhhcCCcccceeeeeecCc---ceEE-EcCCCCHHHHHHhhcccCCCCcccHHHHHHHHHHHhc
Q psy14666          9 TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VEVL-ATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALK   83 (256)
Q Consensus         9 nRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~---a~vl-~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~~aLk   83 (256)
                      .||.+.++++..++..+.......+||||+|++.   +.++ .++|.+. .+...+..+..+|.+.++.||..|...++
T Consensus       149 ~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~agG~Tplg~AL~~A~~~~~  226 (242)
T 3rag_A          149 DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVARGGTPTGPAIDHAADLLL  226 (242)
T ss_dssp             TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCCCCCCcHHHHHHHHHHHHH
Confidence            3899999999999987665556889999999985   4444 4999988 77778888889999999999999988873

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=96.70  E-value=0.0047  Score=62.94  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=72.0

Q ss_pred             CCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcC-CCCCChH------------------------HH-HHHHHHHHh
Q psy14666         65 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDLEER------------------------EL-TKLAKRLKK  118 (256)
Q Consensus        65 ~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS-~l~~D~~------------------------di-~~~~k~lkk  118 (256)
                      ...++.++.||+.|..+|+..   +.+.||++|.+| |.+..||                        +- .++++++.+
T Consensus       285 ~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~  361 (766)
T 3eh2_A          285 RETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA  361 (766)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHh
Confidence            446678999999999999864   357899999988 6532221                        12 468999999


Q ss_pred             cCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhccccC
Q psy14666        119 EKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILT  177 (256)
Q Consensus       119 ~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~~~~~  177 (256)
                      ++|.||+..++...-   .-+.|++.|       +|..++.-.|....|...|..-|..++.
T Consensus       362 ~~i~VDlF~~s~~~vdlatl~~l~~~T-------GG~v~~y~~F~~~~d~~~f~~dl~~~l~  416 (766)
T 3eh2_A          362 QGCCVDLFLFPNQYVDVATLSVVPQLT-------GGSVYKYASFQVENDQERFLSDLRRDVQ  416 (766)
T ss_dssp             HTEEEEEEECCSSCCCHHHHTHHHHHT-------TCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEecCCCcChHHHHHHHhhc-------CceEEEeCCCcchhHHHHHHHHHHHHhh
Confidence            999999999987532   234444433       4555555556666777777777776664

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}

Probab=96.54  E-value=0.015  Score=56.53  Aligned_cols=112  Identities=11%  Similarity=0.044  Sum_probs=71.1

Q ss_pred             CCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhcccC--CCCcccHHHHHHHHHHHhcc
Q psy14666          7 LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ--PNGNINFMTGIRIAHLALKH   84 (256)
Q Consensus         7 ~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l~--~~G~~sl~naL~~A~~aLkh   84 (256)
                      ++++++++...+  |+..  ..|  .++||++|++... ..+++.+ ..+.+.|+.+.  +.|.+++..+|+.+....  
T Consensus       385 k~~~~e~Aa~la--~~~~--r~~--d~v~lv~Fs~~~~-~~~~~~~-~~l~~~l~~l~~~~~ggTdi~~~l~~a~~~~--  454 (535)
T 2nvo_A          385 GLTPNMAAAAMS--LIAL--RTE--PDALTMGFAEQFR-PLGITPR-DTLESAMQKAQSVSFGGTDCAQPILWAAQER--  454 (535)
T ss_dssp             TCCHHHHHHHHH--HHHH--HHS--SEEEEEEEBSSEE-ECCCCTT-CCHHHHHHHTCCSSBCCCCTTHHHHHHHHTT--
T ss_pred             cccHHHHHHHHH--HHHc--CcC--CceEEEEECCcce-EcCCCcc-hhHHHHHHHHhhCCCCCccHHHHHHHHHHhc--
Confidence            367777665433  3321  233  3899999988432 2355544 33445555543  368999999987764332  


Q ss_pred             cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhc---CceEEEEEecCCc
Q psy14666         85 RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE---KVNVDIVSFGEER  132 (256)
Q Consensus        85 ~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~---nI~V~vI~fGae~  132 (256)
                          ....++|||+++....+..++.+.+++.++.   ++++.+|++|...
T Consensus       455 ----~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~  501 (535)
T 2nvo_A          455 ----LDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATE  501 (535)
T ss_dssp             ----CCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred             ----CCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCC
Confidence                2345899999886554333455666777765   8999999999864

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=96.42  E-value=0.032  Score=56.79  Aligned_cols=61  Identities=15%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             CcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHH-------------------------HHHHHHHHHhcCc
Q psy14666         67 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERE-------------------------LTKLAKRLKKEKV  121 (256)
Q Consensus        67 G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~d-------------------------i~~~~k~lkk~nI  121 (256)
                      -+..++.||+.|...|+.     .+.||++|.+|+-+..||.                         -.++++++.+++|
T Consensus       269 ~~~~~G~AL~aA~~ll~~-----~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i  343 (751)
T 3eh1_A          269 THSALGPALQAAFKLMSP-----TGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQT  343 (751)
T ss_dssp             CCCCHHHHHHHHHHHHTT-----TCEEEEEEECSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTE
T ss_pred             CccchHHHHHHHHHHhhc-----CCCEEEEEecCCCCCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHHhcCc
Confidence            457899999999999974     4679999999866533331                         1468999999999


Q ss_pred             eEEEEEecCCc
Q psy14666        122 NVDIVSFGEER  132 (256)
Q Consensus       122 ~V~vI~fGae~  132 (256)
                      .||+..++.+-
T Consensus       344 ~VDlF~~s~~~  354 (751)
T 3eh1_A          344 AVDLFLLSSQY  354 (751)
T ss_dssp             EEEEEECCSSC
T ss_pred             eEEEEEccCcc
Confidence            99999998653

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=96.27  E-value=0.0071  Score=61.66  Aligned_cols=102  Identities=14%  Similarity=0.070  Sum_probs=68.7

Q ss_pred             CCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcC-CCCCChH------------------------HH-HHHHHHHHh
Q psy14666         65 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDLEER------------------------EL-TKLAKRLKK  118 (256)
Q Consensus        65 ~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS-~l~~D~~------------------------di-~~~~k~lkk  118 (256)
                      ...++.++.||+.|..+|+..   +.+.||++|.+| |.+..||                        +- .++++++.+
T Consensus       289 ~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~  365 (770)
T 3efo_B          289 NENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA  365 (770)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHH---TCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHH
Confidence            345677899999999999864   257799999988 6532222                        12 358999999


Q ss_pred             cCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhcccc
Q psy14666        119 EKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSIL  176 (256)
Q Consensus       119 ~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~~~~  176 (256)
                      ++|.||+..++..--   .-+.|++.|       +|..++--.|....|...|..-+..++
T Consensus       366 ~~i~VDlF~~s~~~vdlatl~~l~~~T-------GG~v~~y~~F~~~~~~~~f~~dl~~~l  419 (770)
T 3efo_B          366 HGCSVTLFLFPSQYVDVASLGLVPQLT-------GGTLYKYNNFQMHLDRQQFLNDLRNDI  419 (770)
T ss_dssp             TTEEEEEEECCSSCCCHHHHTHHHHHT-------TCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEEEecCCccChHHHHHHHhhc-------CceEEEecCCcchhHHHHHHHHHHHhh
Confidence            999999999987532   233444433       344555444555566676665555554

>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}

Probab=95.37  E-value=0.16  Score=44.09  Aligned_cols=127  Identities=12%  Similarity=0.166  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCc-ceEEEcCCCCHHHHHHhhcccCCCCccc----HHHHHHHHHHH---h
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGNIN----FMTGIRIAHLA---L   82 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~-a~vl~~lT~d~~~il~aL~~l~~~G~~s----l~naL~~A~~a---L   82 (256)
                      ++..++.+..++++.-+.+...++|++++.++ .....++|.|.....+.++++..+|..+    -..||..|...   +
T Consensus        20 i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i   99 (212)
T 2iue_A           20 LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEI   99 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhc
Confidence            66677777877776655566679999999995 6668899999999999999987665322    22244443322   2


Q ss_pred             cccCCCCCceEEEEEE-cCCC-CC-Ch----------------------------HHHHHHHHHHHhcCceEEEEEecCC
Q psy14666         83 KHRQGKNHKMRIIAFV-GSPV-DL-EE----------------------------RELTKLAKRLKKEKVNVDIVSFGEE  131 (256)
Q Consensus        83 kh~p~~~~~~rIVlfv-gS~l-~~-D~----------------------------~di~~~~k~lkk~nI~V~vI~fGae  131 (256)
                      .-|+    ..|+|||+ +++. .. |+                            ..+.++.++|+++||.+-..-=...
T Consensus       100 ~Wr~----a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~  175 (212)
T 2iue_A          100 GWRN----GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRM  175 (212)
T ss_dssp             TCCS----SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHH
T ss_pred             ccCC----ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHHHHhcCCcEEEEEccch
Confidence            2343    45777766 4432 21 32                            3677899999999997655554444


Q ss_pred             cccccchhHH
Q psy14666        132 REGGKGQDEE  141 (256)
Q Consensus       132 ~~i~k~l~~~  141 (256)
                      ...++.|.+.
T Consensus       176 ~~~Y~~l~~~  185 (212)
T 2iue_A          176 VKTYEKLTTF  185 (212)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            5556666654

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B

Probab=94.37  E-value=0.026  Score=55.77  Aligned_cols=54  Identities=17%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             eeeEeeecCCCcccCCC--CCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666        203 ITTSLNVDNSDFMRNGD--FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK  256 (256)
Q Consensus       203 ~~~~~~~dns~~~~~g~--~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~  256 (256)
                      .++|+++|.|+.|...|  .-||||++..+++.-+.+.|.-++|...|||+.+|++
T Consensus        36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~   91 (609)
T 1jey_A           36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTE   91 (609)
T ss_dssp             EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred             eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccC
Confidence            57999999999999988  4799999999999999999999999999999999864

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=93.25  E-value=0.1  Score=43.08  Aligned_cols=50  Identities=20%  Similarity=0.379  Sum_probs=41.8

Q ss_pred             eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666        203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK  256 (256)
Q Consensus       203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~  256 (256)
                      .-.++++|.|..|...|+-|+||+.-.+++..+....    |...|||++++++
T Consensus        12 ~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~   61 (218)
T 3ibs_A           12 VEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGD   61 (218)
T ss_dssp             CEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSS
T ss_pred             CcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCC
Confidence            3567789999999999999999999888888777553    4779999998763

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=92.98  E-value=0.88  Score=45.88  Aligned_cols=125  Identities=15%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhhcCCcccceeeeeecCcc------------------------------eEEEcCCCCHHHHHHhhcccC
Q psy14666         15 QDAVNLVCHSKTRSNPENNVGLLAMADSV------------------------------EVLATLTSDVGRILSKLHQVQ   64 (256)
Q Consensus        15 ~~a~~~fv~~~f~qNP~sqVGIVt~~~~a------------------------------~vl~~lT~d~~~il~aL~~l~   64 (256)
                      +..+..|+++.-+.....++|+.+|.+++                              ....+||.|..+..+.++++.
T Consensus       132 k~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~  211 (690)
T 3fcs_B          132 QNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS  211 (690)
T ss_dssp             TTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceeecccCCCHHHHHHHhhcee
Confidence            33444454443333344699999998821                              135789999999999999887


Q ss_pred             CCCccc----HHHHHHHHH---HHhcccCCCCCceEEEEEE-cCCCC--CCh----------------------------
Q psy14666         65 PNGNIN----FMTGIRIAH---LALKHRQGKNHKMRIIAFV-GSPVD--LEE----------------------------  106 (256)
Q Consensus        65 ~~G~~s----l~naL~~A~---~aLkh~p~~~~~~rIVlfv-gS~l~--~D~----------------------------  106 (256)
                      ..|..+    -..||..|.   .-+--|+   ...|+|||+ +++.-  .|.                            
T Consensus       212 isgn~D~PE~g~dAl~qa~~c~~~igWr~---~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~D  288 (690)
T 3fcs_B          212 VSRNRDAPEGGFDAIMQATVCDEKIGWRN---DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMD  288 (690)
T ss_dssp             CCCCSSSSBCHHHHHHHHHHCHHHHTCCS---SSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSC
T ss_pred             ccCCCCCCchHHHHHHHHhhcccccCCCC---CceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccC
Confidence            766533    233443333   2232353   345666666 44322  122                            


Q ss_pred             -HHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666        107 -RELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus       107 -~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                       -.+-++.++|.++||.+-+........+++.|.++.
T Consensus       289 ypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i  325 (690)
T 3fcs_B          289 YPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI  325 (690)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhc
Confidence             137889999999999877777776677788777654

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=91.01  E-value=0.17  Score=51.05  Aligned_cols=121  Identities=12%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             HHHHHHhhhcCCcccceeeeeecCc-----------------------------ceEEEcCCCCHHHHHHhhcccCCCCc
Q psy14666         18 VNLVCHSKTRSNPENNVGLLAMADS-----------------------------VEVLATLTSDVGRILSKLHQVQPNGN   68 (256)
Q Consensus        18 ~~~fv~~~f~qNP~sqVGIVt~~~~-----------------------------a~vl~~lT~d~~~il~aL~~l~~~G~   68 (256)
                      +..|+++.-+.....++|+.+|.++                             .....+||.|..+..+.++++..+|.
T Consensus       128 ~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn  207 (687)
T 3k6s_B          128 GGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGN  207 (687)
T ss_dssp             CTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCCC
T ss_pred             HHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceeecccCCCHHHHHHHHhhccccCC
Confidence            3344444333444569999999872                             12367899999999999998877665


Q ss_pred             ccHHH-HHHHHHHHh------cccCCCCCceEEEEEE-cCCCC--CCh----------------------------HHHH
Q psy14666         69 INFMT-GIRIAHLAL------KHRQGKNHKMRIIAFV-GSPVD--LEE----------------------------RELT  110 (256)
Q Consensus        69 ~sl~n-aL~~A~~aL------kh~p~~~~~~rIVlfv-gS~l~--~D~----------------------------~di~  110 (256)
                      .+.-. +++..++|+      --|   . ..|+|||+ +++.-  .|.                            -.+-
T Consensus       208 ~D~PE~g~dAl~qa~vc~~~igWr---~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~  283 (687)
T 3k6s_B          208 LDAPEGGLDAMMQVAACPEEIGWR---N-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVG  283 (687)
T ss_dssp             SSSSCCHHHHHHHHTTCHHHHCCC---S-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGG
T ss_pred             CCCCchHHHHHHHHhhcccccCCc---c-ceEEEEEECCCccccCCCccccceecCCCCccccCCCccccccccCCCCHH
Confidence            33222 233333333      234   2 44677766 44321  121                            1367


Q ss_pred             HHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666        111 KLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus       111 ~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                      ++.++|+++||.+-+...+....+++.|.++.
T Consensus       284 ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i  315 (687)
T 3k6s_B          284 QLAHKLAENNIQPIFAVTSRMVKTYEKLTEII  315 (687)
T ss_dssp             GHHHHHHHTTCBCCEEECGGGHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCeEEEEEeccchhhHHHHHhhc
Confidence            78999999999887777777777787777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	256
d1jeyb2	236	c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain	2e-15
d1jeyb2	236	c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain	8e-06

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 2e-15
 Identities = 19/191 (9%), Positives = 47/191 (24%), Gaps = 20/191 (10%)

Query: 1   MRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVG----- 54
           M N    + +  +  +  + +    +  +  ++ + L+              D       
Sbjct: 15  MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITV 74

Query: 55  -------------RILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSP 101
                         I SK+       +      + +  +  +    K  K  I  F    
Sbjct: 75  HRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLS 134

Query: 102 VDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLST 161
               + +L  +   LKK  +++         +     D  +            + L   T
Sbjct: 135 SRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPF-RLGGHGPSFPLKGIT 193

Query: 162 SLEKSSACETN 172
             +K       
Sbjct: 194 EQQKEGLEIVK 204

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 8e-06
 Identities = 4/47 (8%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 209 VDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
           +D    M N    + +  +  +  + +    +  +  ++ + L+   
Sbjct: 9   MDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	256
d1jeyb2	236	Ku80 subunit N-terminal domain {Human (Homo sapien	99.46
d1jeya2	220	Ku70 subunit N-terminal domain {Human (Homo sapien	99.14
d1shux_	181	Capillary morphogenesis protein 2 domain {Human (H	99.1
d1atza_	184	von Willebrand factor A3 domain, vWA3 {Human (Homo	98.96
d1n3ya_	189	Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI	98.86
d1v7pc_	193	Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId	98.84
d1pt6a_	192	Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId	98.8
d1ijba_	202	von Willebrand factor A1 domain, vWA1 {Human (Homo	98.79
d1q0pa_	209	Complement factor B domain {Human (Homo sapiens) [	98.7
d1mf7a_	194	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub	98.65
d1mjna_	179	Integrin CD11a/CD18 (Leukocyte function associated	98.06
d1pd0a3	252	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	97.85
d2qtva3	271	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	97.73
d1tyeb2	248	Integrin beta A domain {Human (Homo sapiens) [TaxI	97.58
d1yvra2	174	60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c	97.54

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-13  Score=112.05  Aligned_cols=134  Identities=12%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc--------------eEEEcCCCCHHHHHHhhccc--
Q psy14666          1 MRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV--------------EVLATLTSDVGRILSKLHQV--   63 (256)
Q Consensus         1 M~n~D~-~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a--------------~vl~~lT~d~~~il~aL~~l--   63 (256)
                      |...|. .|+||+++++++..|++.++..+|...||||.|+..+              .++.++.......+..+...  
T Consensus        15 M~~~~~~~~srl~~ak~~~~~~v~~~~~~~~~d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   94 (236)
T d1jeyb2          15 MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQ   94 (236)
T ss_dssp             GGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCC
T ss_pred             hccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCcccccccccccceEEEEeccccchhhHHHHHhhhcc
Confidence            555554 4899999999999999999999999999999998753              45666666666666666653  


Q ss_pred             CCCCcccHHHHHHHHHHHhcc--cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCccc
Q psy14666         64 QPNGNINFMTGIRIAHLALKH--RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREG  134 (256)
Q Consensus        64 ~~~G~~sl~naL~~A~~aLkh--~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i  134 (256)
                      ...+...+..+|..|...+..  ...+..+++||||.++..+.+..++.++++.|++.+|++++|++|.....
T Consensus        95 ~~~~~~~~~~al~~a~~~~~~~~~~~~~~~r~IiL~TDG~~~~~~~~~~~~a~~l~~~~I~i~~ig~g~~~~~  167 (236)
T d1jeyb2          95 PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKE  167 (236)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC--
T ss_pred             ccccccchhHHHHHHHHHHHHhhhcccccccEEEEEecCCCCcChHHHHHHHHHHHHcCCEEEEEecCCcCCC
Confidence            344568999999999888754  23334577999999997766777899999999999999999999976553

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.1e-10  Score=93.22  Aligned_cols=132  Identities=14%  Similarity=0.127  Sum_probs=101.3

Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc----------eEEEcCCCCHHHHHHhhccc-----
Q psy14666          1 MRNGDF--LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV----------EVLATLTSDVGRILSKLHQV-----   63 (256)
Q Consensus         1 M~n~D~--~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a----------~vl~~lT~d~~~il~aL~~l-----   63 (256)
                      |.+.|.  .++||..+++++..+++.+..++|..+||||.++..+          .++.+++......+..++.+     
T Consensus        15 M~~~d~~~~~s~~~~~~~~~~~~~~~~i~~~~~d~vglv~f~t~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (220)
T d1jeya2          15 MFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQG   94 (220)
T ss_dssp             GGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHH
T ss_pred             cCccccCCCCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEEeccccccCCCcccchhhhhcccCchHHHHHhhhhhhhhhh
Confidence            556665  5789999999999999999999999999999998643          24455544444444444432     


Q ss_pred             --------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCC--C---hHHHHHHHHHHHhcCceEEEEEecC
Q psy14666         64 --------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--E---ERELTKLAKRLKKEKVNVDIVSFGE  130 (256)
Q Consensus        64 --------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~--D---~~di~~~~k~lkk~nI~V~vI~fGa  130 (256)
                              ...|.+.+..||..|...|+..+.....++||+|.++...+  |   ...+.+.++.+++.+|.|++|++|.
T Consensus        95 ~~~~~~~~~~~~~t~l~~al~~a~~~~~~~~~~~~~k~IiliTDg~~~~~~~~~~~~~~~~~a~~~~~~gv~i~~i~ig~  174 (220)
T d1jeya2          95 QKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKK  174 (220)
T ss_dssp             HHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCC
T ss_pred             hhhhhhcccCCCCccHHHHHHHHHHHHHhcccccCCcEEEEEecCCCCCCCcchhhHHHHHHHHHHhhhcceEEEEEeCC
Confidence                    46789999999999999998765445567899999886542  3   2345677888999999999999997


Q ss_pred             Cc
Q psy14666        131 ER  132 (256)
Q Consensus       131 e~  132 (256)
                      +.
T Consensus       175 ~~  176 (220)
T d1jeya2         175 PG  176 (220)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.9e-10  Score=91.54  Aligned_cols=128  Identities=19%  Similarity=0.217  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhcc---cCCCCcccHHHHHHHHHHHhcccCC
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQ---VQPNGNINFMTGIRIAHLALKHRQG   87 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~---l~~~G~~sl~naL~~A~~aLkh~p~   87 (256)
                      +...++++..+++.|.  ++..+||||++++.++++.+++.+...+.++|+.   +.+.|.+.+..||+.+...+.....
T Consensus        22 ~~~~k~~~~~~~~~~~--~~~~rvglv~fs~~~~~~~~l~~~~~~~~~~l~~l~~~~~~g~t~~~~al~~~~~~~~~~~~   99 (181)
T d1shux_          22 WIEIYNFVQQLAERFV--SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGG   99 (181)
T ss_dssp             HHHHHHHHHHHHHHCC--CTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHHHhc--CCCCEEEEEEeecceEEEEEecCCHHHHHHHhhhcccccCCCcchHHHHHHHHHHHhhhccc
Confidence            5567889999998864  5668999999999999999999888877777664   5678899999999999988875433


Q ss_pred             CCCceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666         88 KNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE  142 (256)
Q Consensus        88 ~~~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~  142 (256)
                      ...++.+|++.+|..+. ++..+.+.++.+|+.||+|..||+|.  .....|.+++
T Consensus       100 ~~~~~~ivliTDG~~~~~~~~~~~~~~~~~k~~gv~v~~vgig~--~~~~~L~~ia  153 (181)
T d1shux_         100 LKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD--FEQAQLERIA  153 (181)
T ss_dssp             GGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS--CCHHHHHHHS
T ss_pred             CCCceEEEEecCCCCCCCccHHHHHHHHHHHHCCCEEEEEEeCc--cCHHHHHHHh
Confidence            35566788888887654 55566788999999999999999995  2344555553

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A3 domain, vWA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1e-08  Score=83.96  Aligned_cols=132  Identities=11%  Similarity=0.118  Sum_probs=102.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccC-CCCcccHHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQ-PNGNINFMTGIRIAHL   80 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~-~~G~~sl~naL~~A~~   80 (256)
                      +.+...+|+.+++++..+++.|.-.....+||||.+++.+....+++  .+...+.++|+++. .+|.+++..||+.+..
T Consensus        13 ~s~~~~~f~~~k~~v~~~i~~~~i~~~~~rv~vv~f~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~t~~~~al~~~~~   92 (184)
T d1atza_          13 SSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVR   92 (184)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEeccceeeccccccccHHHHHHHHHhhhhcccccchhhhhhHHHH
Confidence            45667889999999999998764344455999999999888888875  68999999999985 5677999999999988


Q ss_pred             Hhcc-----cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHH
Q psy14666         81 ALKH-----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEE  141 (256)
Q Consensus        81 aLkh-----~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~  141 (256)
                      .+-.     ||  ..++.+|+|.++....   ++.+.++.||+.||.|.+||+|...... .|..+
T Consensus        93 ~~~~~~~g~R~--~~~kvvvlltdg~~~d---~~~~~a~~lk~~gi~v~~igiG~~~~~~-~L~~i  152 (184)
T d1atza_          93 YLTSEMHGARP--GASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDRYDAA-QLRIL  152 (184)
T ss_dssp             HHHSCCTTCCT--TSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSSSCHH-HHHHH
T ss_pred             HhhhhhcCCCC--CCceEEEEEEecCccc---hhhHHHHHHHHcCcEEEEEEeCCcCCHH-HHHHH
Confidence            7632     44  4567788888876443   4566788999999999999999876532 34444

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.1e-09  Score=84.55  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=96.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccC-CCCcccHHHHHHHHHHH
Q psy14666          5 DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNGNINFMTGIRIAHLA   81 (256)
Q Consensus         5 D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~-~~G~~sl~naL~~A~~a   81 (256)
                      -+.+.+|..++++++.|++.+ + ....+||||.+++.+.+..+++.  +...+.++|..+. .+|.+.+..||..|...
T Consensus        14 Sm~~~~~~~~k~~~~~~i~~l-~-~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~t~~~~al~~a~~~   91 (189)
T d1n3ya_          14 SISSRNFATMMNFVRAVISQF-Q-RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHR   91 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTS-C-TTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEeeccceeeccccccccHHHHHHHHHhhhhhhhhchHHHHHHHHHHH
Confidence            355678999999999999863 3 22348999999999988888763  4456667777764 67889999999999765


Q ss_pred             hcc-c--CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666         82 LKH-R--QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus        82 Lkh-~--p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                      +-. .  .....++.+|+|.+|..+.++.++.+.++.+++.+|.|.+||+|....
T Consensus        92 ~f~~~~~~r~~~~kvivllTDG~~~~~~~~~~~~~~~~~~~gv~i~~Vgig~~~~  146 (189)
T d1n3ya_          92 LFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQ  146 (189)
T ss_dssp             TTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGG
T ss_pred             HhhhhcCCCCCCceEEEEEecCCCCCCcccHHHHHHHHHHCCCceEEEecccccc
Confidence            421 1  112456678888888766667788899999999999999999997543

>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.2e-08  Score=80.24  Aligned_cols=120  Identities=11%  Similarity=0.084  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccC-C-CCcccHHHHHHHHHHHhc--
Q psy14666         10 RLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQ-P-NGNINFMTGIRIAHLALK--   83 (256)
Q Consensus        10 RL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~-~-~G~~sl~naL~~A~~aLk--   83 (256)
                      +|+.+++.++.|++.|--.....+||||.+++.+.+..+++  .+...++.+++.+. . +|.+.+..||+.|...+-  
T Consensus        16 ~f~~~k~f~~~ii~~~~i~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~t~~~~AL~~a~~~~f~~   95 (193)
T d1v7pc_          16 PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSA   95 (193)
T ss_dssp             CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSG
T ss_pred             cHHHHHHHHHHHHHHcccCCCccEEEEEEeecceeeeecccchhhHHHHHHHHHhhhhhccCccchHHHHHHHHHhcccc
Confidence            48899999999998764333345899999999999888887  58889999999874 3 356899999999998862  


Q ss_pred             ---ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCc
Q psy14666         84 ---HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER  132 (256)
Q Consensus        84 ---h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~  132 (256)
                         .|+  ..++-+|+|.+|... |+......++++++.+|.+..||+|...
T Consensus        96 ~~~~R~--~~~kvvVllTDG~s~-d~~~~~~~~~~~~~~gv~v~~Igvg~~~  144 (193)
T d1v7pc_          96 ASGGRR--SATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLGYL  144 (193)
T ss_dssp             GGTCCT--TSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECHHH
T ss_pred             ccCCCC--CCceEEEEEecCCcC-CCccHHHHHHHHHhCCCEEEEEEeCCcc
Confidence               233  446677788788744 7777888999999999999999998653

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=6.8e-08  Score=78.74  Aligned_cols=121  Identities=12%  Similarity=0.135  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccCC-CC-cccHHHHHHHHHHHhcc-
Q psy14666         10 RLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQP-NG-NINFMTGIRIAHLALKH-   84 (256)
Q Consensus        10 RL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~~-~G-~~sl~naL~~A~~aLkh-   84 (256)
                      +|+.+++.++.+++.|--.....+||||.+++.+.+..+++.  +...++.++.++.. +| ......||+.+...+.. 
T Consensus        16 ~~~~~k~f~~~~i~~~~i~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~al~~~~~~~~~~   95 (192)
T d1pt6a_          16 PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTE   95 (192)
T ss_dssp             CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSG
T ss_pred             CHHHHHHHHHHHHHHhccCCCCcEEEEEEEeccEEEEEeCCcchhhHHHHHHHhhhhhhhhhccchHHHHHHHHHhhhcc
Confidence            388899999999987643333459999999998888888874  88899999999753 33 57788999998876532 


Q ss_pred             ----cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666         85 ----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus        85 ----~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                          ||  +.++.+|++.+|... |+.++.+.++.+|+.||.|.+||+|....
T Consensus        96 ~~g~R~--~~~kviillTDG~~~-d~~~~~~~a~~lk~~gi~v~~igvg~~~~  145 (192)
T d1pt6a_          96 ARGARR--GVKKVMVIVTDGESH-DNHRLKKVIQDCEDENIQRFSIAILGSYN  145 (192)
T ss_dssp             GGTCCT--TCEEEEEEEESSCCS-CSHHHHHHHHHHHHTTEEEEEEEECHHHH
T ss_pred             ccCCCC--CcceEEEEEecCCCC-cchhhHHHHHHHHHCCCeEEEEEEecccc
Confidence                33  446677888888754 66789999999999999999999996554

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A1 domain, vWA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=7.3e-08  Score=79.69  Aligned_cols=137  Identities=13%  Similarity=0.058  Sum_probs=101.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAH   79 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~   79 (256)
                      +.+..+.|..++++++.+++.|--.....+|||+.+++.+....+++  .+...+.+.++.+... | ...+..+|+.+.
T Consensus        24 ~S~~~~~f~~~k~fv~~~i~~l~~~~~~~rvavv~y~~~~~~~~~l~~~~~~~~l~~~i~~l~~~~g~~~~~~~al~~~~  103 (202)
T d1ijba_          24 SRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTL  103 (202)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEecceeeecCCcccchHHHHHHHHHhhhhhhhccccHHHHHHHHH
Confidence            34556778899999999998764444456999999999988888887  6778899999988643 3 478999999887


Q ss_pred             HHhcccCC-CCCceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHH
Q psy14666         80 LALKHRQG-KNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEE  141 (256)
Q Consensus        80 ~aLkh~p~-~~~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~  141 (256)
                      .-+-.... ....+.+|+|.++.... ...++.+.++.|++.+|.|.+||+|..... ..|..+
T Consensus       104 ~~~~~~~~r~~~~k~vivitdg~~~~~~~~~~~~~~~~l~~~gv~i~~Vgig~~~~~-~~L~~i  166 (202)
T d1ijba_         104 FQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANL-KQIRLI  166 (202)
T ss_dssp             HHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSCH-HHHHHH
T ss_pred             HHhhhhccCCCCcceEEEecccCCCcccchHHHHHHHHHHHcCCeEEEEEeCCcCCH-HHHHHH
Confidence            66533222 13455567776775443 345788999999999999999999977654 234544

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.9e-07  Score=76.16  Aligned_cols=137  Identities=7%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccC-----CCCcccHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ-----PNGNINFMTG   74 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~-----~~G~~sl~na   74 (256)
                      +.+..++|+.++++++.+++.+-...+..+|||+++++.+.+..+++.    +...+..+|+++.     .+|.+.+..|
T Consensus        12 gSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~l~~~i~~i~~~~~~~~g~t~~~~a   91 (209)
T d1q0pa_          12 DSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKA   91 (209)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCceeEEecCccchhhHHHHHHHHHHHhhhccccCCCCchHHHH
Confidence            446678999999999999998866667789999999999998888864    4666777777763     6788999999


Q ss_pred             HHHHHHHhcccCC------CCCceEEEEEEcCCCCC--ChHHHHHHHHH----------HHhcCceEEEEEecCCccccc
Q psy14666         75 IRIAHLALKHRQG------KNHKMRIIAFVGSPVDL--EERELTKLAKR----------LKKEKVNVDIVSFGEEREGGK  136 (256)
Q Consensus        75 L~~A~~aLkh~p~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~----------lkk~nI~V~vI~fGae~~i~k  136 (256)
                      |+.|...+.....      ...++.+|+|.+|..+.  ++.+..+.++.          ++..+|.+.+|++|.... ..
T Consensus        92 l~~a~~~~~~~~~~~~~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~vgvg~~~~-~~  170 (209)
T d1q0pa_          92 LQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN-QV  170 (209)
T ss_dssp             HHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCC-HH
T ss_pred             HHHHHHHHHhhhccCccccCCCceEEEEEcCCCccCCCChHHHHHHHHHhhhhHHHHHHHHhcCCceEEecCCccCC-HH
Confidence            9999998854211      11234577777776542  56655555443          456789999999987754 23


Q ss_pred             chhHH
Q psy14666        137 GQDEE  141 (256)
Q Consensus       137 ~l~~~  141 (256)
                      .|.++
T Consensus       171 ~L~~i  175 (209)
T d1q0pa_         171 NINAL  175 (209)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            34444

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.2e-08  Score=81.02  Aligned_cols=126  Identities=14%  Similarity=0.171  Sum_probs=96.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccC-CCCcccHHHHHHHHHH
Q psy14666          4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNGNINFMTGIRIAHL   80 (256)
Q Consensus         4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~-~~G~~sl~naL~~A~~   80 (256)
                      +.+.+.+|+.++++++.+++++ ..+ ..+||||.+.+.+....+++.  +...+.++|+.+. .+|...+..||+.+..
T Consensus        16 ~s~~~~~~~~~k~f~~~iv~~l-~~~-~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~i~~~~~~t~~~~al~~~~~   93 (194)
T d1mf7a_          16 GSIIPHDFRRMKEFVSTVMEQL-KKS-KTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVR   93 (194)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH-CCT-TEEEEEEEESSSEEEEECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHc-CcC-CceEEEEEEeccceeEEeccccCCHHHHHHHHhhhhhhhccchHHHHHHHHHH
Confidence            3456778999999999999864 322 249999999998887777753  5567888898886 4678999999999887


Q ss_pred             Hhccc---CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666         81 ALKHR---QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE  131 (256)
Q Consensus        81 aLkh~---p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae  131 (256)
                      .+-..   .....++-+|||.+|....++..+.+.++.+++.+|.+.+||+|..
T Consensus        94 ~~~~~~~~~~~~~~kvvvliTDG~~~~~~~~~~~~~~~~~~~gv~i~~VGi~~~  147 (194)
T d1mf7a_          94 ELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDA  147 (194)
T ss_dssp             TTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGG
T ss_pred             HHHhhhccCCCCCceEEEEEecCCCCCCchhHHHHHHHHHHcCCeeEEEecCCc
Confidence            75321   1113455666777886666777888899999999999999999864

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7e-06  Score=66.14  Aligned_cols=118  Identities=12%  Similarity=0.068  Sum_probs=87.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccC-CCCcccHHHHHHHHHHH
Q psy14666          5 DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQ-PNGNINFMTGIRIAHLA   81 (256)
Q Consensus         5 D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~-~~G~~sl~naL~~A~~a   81 (256)
                      .+.+..|+.+++.++.+++.+ . ....+||||.+++.+.+..+++  .+...+.++++.+. .+|.+.+..||+.+...
T Consensus        14 Si~~~~f~~~k~f~~~~i~~i-~-~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~i~~~~g~t~~~~AL~~~~~~   91 (179)
T d1mjna_          14 SLQPDEFQKILDFMKDVMKKC-S-NTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVATE   91 (179)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT-T-TSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHh-C-CCceEEEEEEEeeeeeEEechhhccchHHHHHHHhhhhcccCcchHHHHHHHHHHH
Confidence            356678999999999999963 2 2234899999999888877776  45666888888875 57889999999998765


Q ss_pred             h-c----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666         82 L-K----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus        82 L-k----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                      + .    .||  ..++-+|++.+|..+.+.       ...++.+|.+.+|++|....
T Consensus        92 ~f~~~~g~R~--~~~kvvvllTDG~s~d~~-------~~~~~~~i~~~~igvg~~~~  139 (179)
T d1mjna_          92 VFREELGARP--DATKVLIIITDGEATDSG-------NIDAAKDIIRYIIGIGKHFQ  139 (179)
T ss_dssp             TSSGGGTCCT--TSEEEEEEEESSCCSSCS-------CCGGGTTSEEEEEEESGGGC
T ss_pred             HhchhcCCCC--CCCeEEEEEECCCCcccc-------hHHHHhcCccceEEeccccc
Confidence            4 2    244  346666777788655322       12357899999999997654

>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=6.9e-05  Score=63.96  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEE------------------------------------EcCCCCHH
Q psy14666         11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL------------------------------------ATLTSDVG   54 (256)
Q Consensus        11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl------------------------------------~~lT~d~~   54 (256)
                      +++.++++..-++..=+.+|...||||++.+...+.                                    +++.....
T Consensus        22 l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~dl~~~~~p~~~~~lv~~~e~~~  101 (252)
T d1pd0a3          22 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ  101 (252)
T ss_dssp             HHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHH
T ss_pred             HHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhhhhhccCCCCccceeeHHHHHH
Confidence            455556655555433234577899999997743321                                    11223344


Q ss_pred             HHHHhhccc------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHHH-------------------
Q psy14666         55 RILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEEREL-------------------  109 (256)
Q Consensus        55 ~il~aL~~l------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di-------------------  109 (256)
                      .+.+.|+.+      ...++..++.||+.|...|++.     +.||++|++|+-+.-+|.+                   
T Consensus       102 ~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~-----gGkI~~f~sg~pt~GpG~l~~r~~~~~~~~~~~~~~~~  176 (252)
T d1pd0a3         102 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-----GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLL  176 (252)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-----CEEEEEEESSCCCSSTTCCCC-----------------
T ss_pred             HHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcC-----CCEEEEEecCCCCCCCcccccccccccccCcccchhcc
Confidence            444445443      2346678999999999999854     5699999999866444421                   


Q ss_pred             -------HHHHHHHHhcCceEEEEEecCCcc
Q psy14666        110 -------TKLAKRLKKEKVNVDIVSFGEERE  133 (256)
Q Consensus       110 -------~~~~k~lkk~nI~V~vI~fGae~~  133 (256)
                             .+++.++.+++|.||+..++.+..
T Consensus       177 ~~a~~fY~~la~~~~~~~isvdlF~~~~~~~  207 (252)
T d1pd0a3         177 SCQDSFYKNFTIDCSKVQITVDLFLASEDYM  207 (252)
T ss_dssp             ---CCHHHHHHHHHTTTTEEEEEEEEESBCC
T ss_pred             cchHHHHHHHHHHHHHCCEEEEEEecccccc
Confidence                   368999999999999999997643

>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=0.0001  Score=63.51  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             HHHHHHhhcccCC---------CCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChH----------------
Q psy14666         53 VGRILSKLHQVQP---------NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER----------------  107 (256)
Q Consensus        53 ~~~il~aL~~l~~---------~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~----------------  107 (256)
                      ...+...|+.|..         .....++.||..|...|+..-. +.+.||++|.+|+-+.-||                
T Consensus       116 ~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~-~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d  194 (271)
T d2qtva3         116 EFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYK-NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHD  194 (271)
T ss_dssp             HHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHCT-TSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHH
T ss_pred             HHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhcc-CCCcEEEEEeCCCCCCCCccccccccccccCCccc
Confidence            4455556665532         2346899999999999975321 4577999999987643221                


Q ss_pred             -------------HH-HHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhc
Q psy14666        108 -------------EL-TKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNT  173 (256)
Q Consensus       108 -------------di-~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~  173 (256)
                                   +- .+++.++.+++|.||+..++.+.--...|..++   .. .+|..+    |....+.+-|++-|.
T Consensus       195 ~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl~~l~~l~---~~-TGG~v~----~~~~F~~~~f~~~l~  266 (271)
T d2qtva3         195 IDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLT---DS-TGGVLL----LTDAFSTAIFKQSYL  266 (271)
T ss_dssp             HHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSHHHHTHHH---HT-TTCCEE----EESCTTSHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCChHHHHhHH---hh-CCceEE----EeCCcCHHHHHHHHH
Confidence                         11 368999999999999999997743222233322   22 122222    333445566766665


Q ss_pred             cc
Q psy14666        174 SI  175 (256)
Q Consensus       174 ~~  175 (256)
                      .+
T Consensus       267 r~  268 (271)
T d2qtva3         267 RL  268 (271)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin beta A domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00042  Score=59.01  Aligned_cols=128  Identities=15%  Similarity=0.182  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc------------------------------eEEEcCCCCHHHHHHh
Q psy14666         10 RLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV------------------------------EVLATLTSDVGRILSK   59 (256)
Q Consensus        10 RL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a------------------------------~vl~~lT~d~~~il~a   59 (256)
                      -++..+.+++.++++..+.++..++|++.+++..                              ....++|.|...+.+.
T Consensus        21 ~i~~vk~~i~~i~~~l~~~~~~~r~g~~~f~D~~~~p~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~t~d~~~f~~~  100 (248)
T d1tyeb2          21 DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEE  100 (248)
T ss_dssp             GHHHHHHHHHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSGGGGTCGGGGGTSCCCCCCSEEEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEecccCccccccchhhccCccccccccccccccceecCCCCCCHHHHHHH
Confidence            3778899999999999889999999999999841                              1356789999999999


Q ss_pred             hcccCCCCcc----cHHHHHHHHHHH---hcccCCCCCceEEEEEE-cCCCCC--Ch-----------------------
Q psy14666         60 LHQVQPNGNI----NFMTGIRIAHLA---LKHRQGKNHKMRIIAFV-GSPVDL--EE-----------------------  106 (256)
Q Consensus        60 L~~l~~~G~~----sl~naL~~A~~a---Lkh~p~~~~~~rIVlfv-gS~l~~--D~-----------------------  106 (256)
                      |.++.+.|.-    ....||..|..+   +.-|+   ..+|+|+|+ +++.-.  |.                       
T Consensus       101 l~~~~~~GggD~pE~~~~Al~~a~~~~~~i~Wr~---~a~r~viliTDA~~H~~~d~~l~g~~~~~d~~~~~~~~~~~~~  177 (248)
T d1tyeb2         101 VKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRN---DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSA  177 (248)
T ss_dssp             HTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCT---TSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTSBBGG
T ss_pred             HhheecccCCCCcchHHHHHHHHHHHhhhCCCCC---CccEEEEEECCCCcccccccccccccccCCCccccCCCCcccc
Confidence            9998876553    357777766543   44454   344655554 553321  11                       


Q ss_pred             ------HHHHHHHHHHHhcCceEEEEEecCCcccccchhH
Q psy14666        107 ------RELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDE  140 (256)
Q Consensus       107 ------~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~  140 (256)
                            ..+.++.++|+++||.+..+.=+......+.|++
T Consensus       178 ~~~~dyps~~ql~~~l~~~~i~~ifavt~~~~~~Y~~l~~  217 (248)
T d1tyeb2         178 STTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSE  217 (248)
T ss_dssp             GGTSCCCCHHHHHHHHHHTTEEEEEEECGGGHHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHhCcEEEEEECchhhHHHHHHHH
Confidence                  1366789999999997654332222344455555

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.54  E-value=0.00032  Score=55.45  Aligned_cols=120  Identities=10%  Similarity=0.075  Sum_probs=76.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCCCcccHHHHHHHH
Q psy14666          1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPNGNINFMTGIRIA   78 (256)
Q Consensus         1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~G~~sl~naL~~A   78 (256)
                      |...|..+.|..+.+.++..+..    .-|..+++|++|.+.+.. .+++  .....++..+... ..|.+.+..+|+.|
T Consensus        18 M~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~vv~F~~~~~~-~~~~~~~~~~~~~~~~~~~-~~ggT~i~~al~~a   91 (174)
T d1yvra2          18 MNQRVLGSILNASVVAAAMCMLV----ARTEKDSHMVAFSDEMLP-CPITVNMLLHEVVEKMSDI-TMGSTDCALPMLWA   91 (174)
T ss_dssp             GGSBSTTSSCBHHHHHHHHHHHH----HHHCSSEEEEEESSSEEC-CSCCTTSCHHHHHHHHTTC-CCSCCCTTHHHHHH
T ss_pred             cCCcccCccHHHHHHHHHHHHHh----hccCCcEEEEEecCCccc-cccCccchHHHHHHHhhcc-ccccccHHHHHHHH
Confidence            56667778777776666666654    345668999999987543 2333  3344444444443 46679999999876


Q ss_pred             HHHhcccCCCCCceEEEEEEcCCCCC---ChHHHHHHHHHHHhcCceEEEEEecCCc
Q psy14666         79 HLALKHRQGKNHKMRIIAFVGSPVDL---EERELTKLAKRLKKEKVNVDIVSFGEER  132 (256)
Q Consensus        79 ~~aLkh~p~~~~~~rIVlfvgS~l~~---D~~di~~~~k~lkk~nI~V~vI~fGae~  132 (256)
                      ....+      ...++|+|+++-...   .+.+..+..++-...++++.+|+++...
T Consensus        92 ~~~~~------~~~~ivllTDg~~~~g~~~~~~~l~~y~~~~~~~~~~~~i~l~~~g  142 (174)
T d1yvra2          92 QKTNT------AADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNG  142 (174)
T ss_dssp             HHTTC------CCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSS
T ss_pred             Hhhhc------cCCEEEEEeCCCccCCCCCHHHHHHHHHHHcCCCcEEEEEECcCCC
Confidence            54322      234899999986553   4555555555555567888888876543