Psyllid ID: psy14668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MSFKNQSSNIHNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEEEEEEEHHHHccccEEEEEEccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHcccccccccccccEEEEEEEEEcccccccHHHHHHHHHcccccccccccccEEEEccccHHHHHHHHHHHccccccccEEEccccccccccccEEEEcccEEEEEEccccEEEEEEEccccccEEEEEEEEcccHHHHHHHHHHHHHcccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHcHHHEEcHHHHHHHHHHHHcccHEEHHHccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccccEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHcccccHHHHHHHcccccccccEEEEEcccEEEEEEEccccEEEEEEHccccccEEEEccHHHHcHHHHHHHHHHHHHcccEEEEcc
Coil and Loop (DISEMBL)
msfknqssnihnispcgrhvenpffnlRSEVSMYTKSIYVRSYALSYLNPYVIHRFLcesdvwpirpdffdrsshggcakpvgdfREIVLRGSSVSQDMSVSHLLKNkklaslmgttppskktvqktsyteaqfplssdpivaskffgtrfacgssvtgddeiviqgdvkddlfdvipekwpeiDEDFIEdlgdlksptyniayyVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHqlfdcsvllcc
Flexible Loop (DISEMBL)
msfknqssnihnispcgrhVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNkklaslmgttppskktvqktsyTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Low Complexity Region (SEG)
MSFKNQSSNIHNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Disordered region (IsUnstruct)
*************SPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDRSSHGGCAKPVGDFREIVLR***********************************************DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLC*
Disordered Region (DISOPRED)
*************SPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFD*******************************************************TSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIED*************YVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Disordered Region (DISEMBL)
**********HNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNKKLASLMGT*************TEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Disordered Region (DISPRO)
**********HNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDR******************************H*LKNK***SLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFKNQSSNIHNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPKYLFTLFFYHQLFDCSVLLCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9NAH4	192	Density-regulated protein	yes	N/A	0.206	0.286	0.709	5e-16
Q9CQJ6	198	Density-regulated protein	yes	N/A	0.206	0.277	0.636	9e-16
O43583	198	Density-regulated protein	yes	N/A	0.203	0.272	0.648	9e-16
Q2HJ47	198	Density-regulated protein	yes	N/A	0.206	0.277	0.636	9e-16
Q6GLZ1	198	Density-regulated protein	N/A	N/A	0.206	0.277	0.636	1e-15
Q6DFN7	200	Density-regulated protein	yes	N/A	0.206	0.275	0.636	1e-15
Q5ZJ39	198	Density-regulated protein	yes	N/A	0.206	0.277	0.636	1e-15
Q6DH65	208	Density-regulated protein	yes	N/A	0.206	0.264	0.6	1e-14
Q5RFP5	198	Density-regulated protein	yes	N/A	0.203	0.272	0.629	1e-14
A4QVI3	201	Translation machinery-ass	N/A	N/A	0.225	0.298	0.453	3e-06

>sp|Q9NAH4|DENR_CAEEL Density-regulated protein homolog OS=Caenorhabditis elegans GN=Y47D3A.21 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           VASK F  +FACGSSVTG DEIVIQGDVKDDL D+IPEKW ++ ++ I+DLGD K
Sbjct: 137 VASKLFAQKFACGSSVTGADEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKK 191

Caenorhabditis elegans (taxid: 6239)

>sp|Q9CQJ6|DENR_MOUSE Density-regulated protein OS=Mus musculus GN=Denr PE=2 SV=1

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKS 197
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K 
Sbjct: 144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 198

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Mus musculus (taxid: 10090)

>sp|O43583|DENR_HUMAN Density-regulated protein OS=Homo sapiens GN=DENR PE=1 SV=2

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct: 144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon. Plays a role in the modulation of the translational profile of a subset of cancer-related mRNAs when recruited to the translational initiation complex by the oncogene MCTS1.

Homo sapiens (taxid: 9606)

>sp|Q2HJ47|DENR_BOVIN Density-regulated protein OS=Bos taurus GN=DENR PE=2 SV=1

 Score = 84.0 bits (206), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKS 197
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K 
Sbjct: 144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 198

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Bos taurus (taxid: 9913)

>sp|Q6GLZ1|DENR_XENLA Density-regulated protein OS=Xenopus laevis GN=denr PE=2 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKS 197
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K 
Sbjct: 144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 198

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Xenopus laevis (taxid: 8355)

>sp|Q6DFN7|DENR_XENTR Density-regulated protein OS=Xenopus tropicalis GN=denr PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKS 197
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K 
Sbjct: 146 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 200

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZJ39|DENR_CHICK Density-regulated protein OS=Gallus gallus GN=DENR PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 46/55 (83%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKS 197
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K 
Sbjct: 144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVKK 198

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Gallus gallus (taxid: 9031)

>sp|Q6DH65|DENR_DANRE Density-regulated protein OS=Danio rerio GN=denr PE=1 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKS 197
           A +FF  +F+CG+SVT +DEI+IQGD  DD+ DVI EKWPE+D+D I+DLG++K 
Sbjct: 154 AQRFFAQKFSCGASVTAEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIDDLGEVKK 208

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Danio rerio (taxid: 7955)

>sp|Q5RFP5|DENR_PONAB Density-regulated protein OS=Pongo abelii GN=DENR PE=2 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 45/54 (83%)

Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+ +D IEDLG++K
Sbjct: 144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVVDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Pongo abelii (taxid: 9601)

>sp|A4QVI3|DENR_MAGO7 Translation machinery-associated protein 22 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TMA22 PE=3 SV=2

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 144 SKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPT 199
           +K FG +FA GSSVT    G +EIV+QGDV D++ + I EK+ ++ ED IE + D K+  
Sbjct: 134 AKDFGKKFATGSSVTKVASGGEEIVVQGDVSDEIKEFIVEKYKDVPEDNIELVDDKKNKK 193

Query: 200 YNIA 203
              A
Sbjct: 194 KEAA 197

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
242013499	449	carbonic anhydrase 6 precursor, putative	0.218	0.129	0.931	1e-22
170048693	204	density-regulated protein [Culex quinque	0.206	0.269	0.927	6e-22
240848985	174	density-regulated protein [Acyrthosiphon	0.206	0.316	0.909	8e-22
91089077	180	PREDICTED: similar to putative accessory	0.218	0.322	0.896	1e-21
195129986	185	GI15232 [Drosophila mojavensis] gi|19390	0.218	0.313	0.896	2e-21
357628799	150	density-regulated protein [Danaus plexip	0.206	0.366	0.927	2e-21
389609389	177	similar to CG9099 [Papilio xuthus]	0.206	0.310	0.927	2e-21
18859973	189	CG9099, isoform A [Drosophila melanogast	0.218	0.306	0.879	7e-21
158295384	205	AGAP006125-PA [Anopheles gambiae str. PE	0.206	0.268	0.872	7e-21
332374728	179	unknown [Dendroctonus ponderosae]	0.218	0.324	0.879	7e-21

>gi|242013499|ref|XP_002427442.1| carbonic anhydrase 6 precursor, putative [Pediculus humanus corporis] gi|212511828|gb|EEB14704.1| carbonic anhydrase 6 precursor, putative [Pediculus humanus corporis]

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 55/58 (94%)

Query: 139 DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           D  VASKFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEID DFIEDLGDLK
Sbjct: 391 DLKVASKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDVDFIEDLGDLK 448

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048693|ref|XP_001870739.1| density-regulated protein [Culex quinquefasciatus] gi|167870717|gb|EDS34100.1| density-regulated protein [Culex quinquefasciatus]

 Score =  110 bits (275), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 54/55 (98%)

Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           VA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI+DLGD K
Sbjct: 149 VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIDDLGDQK 203

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848985|ref|NP_001155541.1| density-regulated protein [Acyrthosiphon pisum] gi|239788895|dbj|BAH71104.1| ACYPI003770 [Acyrthosiphon pisum]

 Score =  110 bits (274), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/55 (90%), Positives = 55/55 (100%)

Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           VA+KFFGT+FACGSSVTG+DEIVIQGDVKDDLFD+IPEKWPEIDED+IEDLGDLK
Sbjct: 119 VAAKFFGTKFACGSSVTGEDEIVIQGDVKDDLFDIIPEKWPEIDEDYIEDLGDLK 173

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089077|ref|XP_971296.1| PREDICTED: similar to putative accessory gland protein [Tribolium castaneum] gi|270012410|gb|EFA08858.1| hypothetical protein TcasGA2_TC006559 [Tribolium castaneum]

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 54/58 (93%)

Query: 139 DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           D  VA+KFFGTRFACGSSVTG+DEIVIQGDVKDDLFDVIPEKWPEIDED IEDLGD K
Sbjct: 122 DLKVAAKFFGTRFACGSSVTGEDEIVIQGDVKDDLFDVIPEKWPEIDEDLIEDLGDQK 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129986|ref|XP_002009435.1| GI15232 [Drosophila mojavensis] gi|193907885|gb|EDW06752.1| GI15232 [Drosophila mojavensis]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 54/58 (93%)

Query: 139 DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           D  VA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKW EIDED IEDLGDLK
Sbjct: 127 DLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDLK 184

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628799|gb|EHJ77976.1| density-regulated protein [Danaus plexippus]

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 53/55 (96%)

Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           VA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED IEDLGD K
Sbjct: 95  VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDSIEDLGDQK 149

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609389|dbj|BAM18306.1| similar to CG9099 [Papilio xuthus]

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 53/55 (96%)

Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           VA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED IEDLGD K
Sbjct: 122 VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDSIEDLGDQK 176

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18859973|ref|NP_573176.1| CG9099, isoform A [Drosophila melanogaster] gi|442616662|ref|NP_001259630.1| CG9099, isoform B [Drosophila melanogaster] gi|16768172|gb|AAL28305.1| GH20858p [Drosophila melanogaster] gi|22832421|gb|AAF48679.3| CG9099, isoform A [Drosophila melanogaster] gi|220944290|gb|ACL84688.1| CG9099-PA [synthetic construct] gi|220954066|gb|ACL89576.1| CG9099-PA [synthetic construct] gi|440216859|gb|AGB95472.1| CG9099, isoform B [Drosophila melanogaster]

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 53/58 (91%)

Query: 139 DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           D  VA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKW EIDED IEDLGD K
Sbjct: 130 DLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDQK 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295384|ref|XP_316185.3| AGAP006125-PA [Anopheles gambiae str. PEST] gi|157016011|gb|EAA10890.3| AGAP006125-PA [Anopheles gambiae str. PEST]

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 54/55 (98%)

Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           +A+KFFGT+FACGSSVTGDDEIVIQGDVKD+LFD+IPEKWPEIDEDFI+DLGD K
Sbjct: 150 LAAKFFGTKFACGSSVTGDDEIVIQGDVKDELFDIIPEKWPEIDEDFIDDLGDQK 204

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374728|gb|AEE62505.1| unknown [Dendroctonus ponderosae]

 Score =  107 bits (266), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 53/58 (91%)

Query: 139 DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
           D  VA+KFFG RFACGSSVTG+DEIVIQGDVKDDLFDVIPEKW EIDEDFIEDLGD K
Sbjct: 121 DLKVAAKFFGQRFACGSSVTGEDEIVIQGDVKDDLFDVIPEKWAEIDEDFIEDLGDQK 178

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
FB|FBgn0030802	189	CG9099 [Drosophila melanogaste	0.206	0.291	0.909	7.8e-23
UNIPROTKB|E1BIK7	202	E1BIK7 "Uncharacterized protei	0.296	0.391	0.518	3.2e-17
UNIPROTKB|F1REW9	202	DENR "Uncharacterized protein"	0.296	0.391	0.518	3.2e-17
WB|WBGene00012932	192	Y47D3A.21 [Caenorhabditis eleg	0.285	0.395	0.582	3.2e-17
UNIPROTKB|E1BZC2	201	DENR "Density-regulated protei	0.203	0.268	0.648	6.7e-17
UNIPROTKB|F1NE92	201	DENR "Density-regulated protei	0.203	0.268	0.648	6.7e-17
UNIPROTKB|Q5ZJ39	198	DENR "Density-regulated protei	0.203	0.272	0.648	6.7e-17
UNIPROTKB|Q2HJ47	198	DENR "Density-regulated protei	0.203	0.272	0.648	6.7e-17
UNIPROTKB|J9NSD0	275	DENR "Uncharacterized protein"	0.203	0.196	0.648	6.7e-17
UNIPROTKB|O43583	198	DENR "Density-regulated protei	0.203	0.272	0.648	6.7e-17

FB|FBgn0030802 CG9099 [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 50/55 (90%), Positives = 52/55 (94%)

Query:   142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             VA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKW EIDED IEDLGD K
Sbjct:   133 VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDQK 187

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|E1BIK7 E1BIK7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 41/79 (51%), Positives = 53/79 (67%)

Query:   118 PPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI 177
             P +KK         A F    D   A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI
Sbjct:   123 PRAKKKYVTRVCGLATFVTEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVI 182

Query:   178 PEKWPEIDEDFIEDLGDLK 196
              EKWPE+D+D IEDLG++K
Sbjct:   183 QEKWPEVDDDSIEDLGEVK 201

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|F1REW9 DENR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 41/79 (51%), Positives = 53/79 (67%)

Query:   118 PPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI 177
             P +KK         A F    D   A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI
Sbjct:   123 PRAKKKYVTRVCGLATFVTEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVI 182

Query:   178 PEKWPEIDEDFIEDLGDLK 196
              EKWPE+D+D IEDLG++K
Sbjct:   183 QEKWPEVDDDSIEDLGEVK 201

GO:0003743 "translation initiation factor activity" evidence=IEA

WB|WBGene00012932 Y47D3A.21 [Caenorhabditis elegans (taxid:6239)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 46/79 (58%), Positives = 55/79 (69%)

Query:   118 PPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI 177
             P  KK+V       A F +  D  VASK F  +FACGSSVTG DEIVIQGDVKDDL D+I
Sbjct:   116 PRGKKSVTVIKGL-ATFDI--DLKVASKLFAQKFACGSSVTGADEIVIQGDVKDDLLDLI 172

Query:   178 PEKWPEIDEDFIEDLGDLK 196
             PEKW ++ ++ I+DLGD K
Sbjct:   173 PEKWKQVTDEQIDDLGDKK 191

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|E1BZC2 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query:   143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct:   147 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 200

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|F1NE92 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query:   143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct:   147 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 200

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5ZJ39 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query:   143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct:   144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 197

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q2HJ47 DENR "Density-regulated protein" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query:   143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct:   144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 197

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9NSD0 DENR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query:   143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct:   221 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 274

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O43583 DENR "Density-regulated protein" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query:   143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196
             A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG++K
Sbjct:   144 AQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGEVK 197

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	266
cd11607	86	cd11607, DENR_C, C-terminal domain of DENR and rel	3e-25
TIGR01159	173	TIGR01159, DRP1, density-regulated protein DRP1	5e-20
pfam01253	74	pfam01253, SUI1, Translation initiation factor SUI	2e-09
cd00474	78	cd00474, eIF1_SUI1_like, Eukaryotic initiation fac	2e-07
COG0023	104	COG0023, SUI1, Translation initiation factor 1 (eI	2e-05

>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins

 Score = 95.3 bits (238), Expect = 3e-25
 Identities = 36/56 (64%), Positives = 41/56 (73%), Gaps = 4/56 (7%)

Query: 142 VASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193
            A+K F  +FACG+SVT      DEIVIQGDV DD+ D+I EKWPEIDED IE LG
Sbjct: 31  KAAKLFAKKFACGASVTKGAEGKDEIVIQGDVTDDIVDLILEKWPEIDEDNIEILG 86

DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86

>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1

 Score = 84.2 bits (208), Expect = 5e-20
 Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 4/55 (7%)

Query: 142 VASKFFGTRFACGSSV----TGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDL 192
            ASK F  +FA G SV    TG +EIVIQGDV DD+ D I EKWPE+ +  I+DL
Sbjct: 119 KASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEVGDKDIKDL 173

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs. Length = 173

>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 139 DPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181
           D    +K    +F CG +V   +EI IQGD +D + D++ ++ 
Sbjct: 32  DLKKLAKELKKKFGCGGTVKDGEEIEIQGDHRDKVKDLLEKEG 74

Length = 74

>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 121 KKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGD-DEIVIQGDVKDDLFDVIPE 179
            K V K     A   L       +     +  CG SV G+  EI IQGD  D +   + E
Sbjct: 12  GKKVTKVEGLPAYIDLRK----LADELKKKLGCGGSVEGEKMEIEIQGDHTDQIIVALEE 67

Query: 180 KWPEIDEDFIEDL 192
           K   ID+D++E L
Sbjct: 68  KG--IDKDWVELL 78

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78

>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 144 SKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI-----PEKWPEID 185
           +K    + ACG +V  D EI IQGD +D + +++       K   I+
Sbjct: 59  AKELKKKCACGGTVK-DGEIEIQGDHRDKVKELLIKKGFKVKNIGIE 104

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
COG0023	104	SUI1 Translation initiation factor 1 (eIF-1/SUI1)	99.86
TIGR01159	173	DRP1 density-regulated protein DRP1. This protein	99.86
KOG3239|consensus	193		99.84
PRK00939	99	translation initiation factor Sui1; Reviewed	99.84
cd00474	77	SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac	99.83
TIGR01158	101	SUI1_rel translation initation factor SUI1, putati	99.83
PRK07451	115	translation initiation factor Sui1; Validated	99.82
PRK09019	108	translation initiation factor Sui1; Validated	99.82
PF01253	83	SUI1: Translation initiation factor SUI1; InterPro	99.8
PRK06824	118	translation initiation factor Sui1; Validated	99.79
TIGR01160	110	SUI1_MOF2 translation initiation factor SUI1, euka	99.73
KOG2522|consensus	560		99.37
KOG1770|consensus	112		99.07
PF05046	87	Img2: Mitochondrial large subunit ribosomal protei	96.84
PRK14444	92	acylphosphatase; Provisional	87.85
KOG4034|consensus	169		83.18
PRK14434	92	acylphosphatase; Provisional	82.08
smart00653	110	eIF2B_5 domain present in translation initiation f	82.04
PF01873	125	eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:	80.3

>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=2.4e-22  Score=162.09  Aligned_cols=82  Identities=23%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             cccccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhCCC
Q psy14668        104 LLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPE  183 (266)
Q Consensus       104 L~knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKypG  183 (266)
                      .++.+|+.||..+++..+|+   ||+|+||+.+++||++|||.||++|||||||++ ++|+|||||+++|.++|.++  |
T Consensus        22 ~k~~~~~V~I~~e~rr~gK~---VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~-~~IeiQGdhr~~v~~~L~~~--G   95 (104)
T COG0023          22 AKEGDQIVRIRRETRRKGKT---VTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD-GEIEIQGDHRDKVKELLIKK--G   95 (104)
T ss_pred             ccccCCeEEEEEEeecCCcE---EEEEeCcccchhhHHHHHHHHHHHcCCCceecC-CEEEEeChHHHHHHHHHHHc--C
Confidence            33459999999999955699   999999999999999999999999999999975 79999999999999999997  9


Q ss_pred             CCcCceEE
Q psy14668        184 IDEDFIED  191 (266)
Q Consensus       184 Ipek~Iev  191 (266)
                      +++++|..
T Consensus        96 ~k~k~i~~  103 (104)
T COG0023          96 FKVKNIGI  103 (104)
T ss_pred             Cchhhccc
Confidence            99999864

>TIGR01159 DRP1 density-regulated protein DRP1

Probab=99.86  E-value=6e-22  Score=170.65  Aligned_cols=83  Identities=39%  Similarity=0.556  Sum_probs=76.3

Q ss_pred             ccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeec----CCcEEEEcCCchhHHHHhhhhhCC
Q psy14668        107 NKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWP  182 (266)
Q Consensus       107 nKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVk----g~~EI~IQGD~rdkV~elL~eKyp  182 (266)
                      ..|+.+|..++|+++|.   ||+|+||+.|++|++++||.|+++|||||||+    +++||+|||||+++|.++|.++||
T Consensus        87 ~~~~V~I~~~~R~krK~---VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~  163 (173)
T TIGR01159        87 LPQKVTIKREPRTKRKF---VTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWP  163 (173)
T ss_pred             CCCeEEEEEEecCCCce---EEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcC
Confidence            45677788899998899   99999999999999999999999999999885    358999999999999999999999


Q ss_pred             CCCcCceEEc
Q psy14668        183 EIDEDFIEDL  192 (266)
Q Consensus       183 GIpek~Ievl  192 (266)
                      +||+++|+++
T Consensus       164 ~v~e~~I~~~  173 (173)
T TIGR01159       164 EVGDKDIKDL  173 (173)
T ss_pred             CCCHHHeeeC
Confidence            9999999863

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.

>KOG3239|consensus

Probab=99.84  E-value=1.7e-21  Score=170.44  Aligned_cols=82  Identities=51%  Similarity=0.794  Sum_probs=70.4

Q ss_pred             eccccCC--CceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecC----CcEEEEcCCchhHHHHhhhhhCCCCCc
Q psy14668        113 LMGTTPP--SKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPEIDE  186 (266)
Q Consensus       113 v~l~kkn--RkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg----~~EI~IQGD~rdkV~elL~eKypGIpe  186 (266)
                      |.+.+..  ++|.   ||+|+||+.|+|||+++||.|++|||||+||++    .+||+||||+.++|.++|.++||++|+
T Consensus       103 V~I~r~~R~KrK~---VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~e  179 (193)
T KOG3239|consen  103 VIIKREARTKRKS---VTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEVPE  179 (193)
T ss_pred             eEeeecccCCcee---EEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccCCc
Confidence            3444444  3456   999999999999999999999999999999996    699999999999999999999999999


Q ss_pred             C--ceEEcCccCC
Q psy14668        187 D--FIEDLGDLKS  197 (266)
Q Consensus       187 k--~IevldkkKK  197 (266)
                      +  .|+.++++||
T Consensus       180 d~~~IED~~~kKk  192 (193)
T KOG3239|consen  180 DDVKIEDLGDKKK  192 (193)
T ss_pred             ccceeecchhhhc
Confidence            9  5665555554

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=99.84  E-value=2.4e-21  Score=153.70  Aligned_cols=83  Identities=20%  Similarity=0.292  Sum_probs=76.5

Q ss_pred             cccccccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668        102 SHLLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       102 etL~knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy  181 (266)
                      .++++.+|.+++..++++++|+   ||+|+||+.+++|++++||.||++|||||||++ ++|+|||||+++|+++|.++ 
T Consensus        17 ~~~~~~~~~i~I~~ekr~~gK~---VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-~~I~iQGD~r~~v~~~L~~~-   91 (99)
T PRK00939         17 EEVAKEQQRIKIKVDKRRYGKE---VTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-GRIELQGDHRERVKELLIKM-   91 (99)
T ss_pred             cccCccCceEEEEEEecCCCce---EEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-CEEEEeCcHHHHHHHHHHHc-
Confidence            4567788999999999877799   999999999999999999999999999999974 89999999999999999986 


Q ss_pred             CCCCcCceE
Q psy14668        182 PEIDEDFIE  190 (266)
Q Consensus       182 pGIpek~Ie  190 (266)
                       |+++++|+
T Consensus        92 -G~~~~~i~   99 (99)
T PRK00939         92 -GFSEENIE   99 (99)
T ss_pred             -CCChhhcC
Confidence             99999885

>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation

Probab=99.83  E-value=5e-21  Score=145.56  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             eeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhCCCCCcCceE
Q psy14668        111 ASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIE  190 (266)
Q Consensus       111 LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKypGIpek~Ie  190 (266)
                      .++..++|+++|+   ||+|+||+.+++|++++||.||++|||||||++ ++|+||||++++|.++|.++  |+++++|+
T Consensus         2 V~I~~e~R~~~K~---VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-~~I~lQGD~r~~v~~~L~~~--g~~~~~i~   75 (77)
T cd00474           2 VRIRIQQRNGGKT---VTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-EVIELQGDQRKKIKEFLIKM--GFAKDNIK   75 (77)
T ss_pred             EEEEEEECCCCcc---EEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-CEEEEeCcHHHHHHHHHHHc--CCCHHHeE
Confidence            4678889999999   999999999999999999999999999999975 89999999999999999998  99998887


Q ss_pred             E
Q psy14668        191 D  191 (266)
Q Consensus       191 v  191 (266)
                      +
T Consensus        76 i   76 (77)
T cd00474          76 I   76 (77)
T ss_pred             e
Confidence            5

This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.

>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic

Probab=99.83  E-value=6e-21  Score=151.40  Aligned_cols=82  Identities=24%  Similarity=0.290  Sum_probs=75.2

Q ss_pred             cccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhh
Q psy14668        102 SHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK  180 (266)
Q Consensus       102 etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eK  180 (266)
                      ...++++|.+++..++++|+ |+   ||+|+||+.+++|++++||.||++|||||||+ +++|+|||||+++|.++|.++
T Consensus        17 ~~~~~~~~~i~i~~e~rgr~gK~---VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk-~~~IeiQGD~~~~v~~~L~~~   92 (101)
T TIGR01158        17 VAKPKEDQVVRIQRETRGRKGKG---VTIIEGLDLSDIDLKELAKELKSKCGCGGTVK-DGVIEIQGDHRDRVKDLLEKK   92 (101)
T ss_pred             ccCCCCCceEEEEEEEecCCCCE---EEEEeCCcCchhhHHHHHHHHHHHhcCCeeEe-CCEEEEeCcHHHHHHHHHHHc
Confidence            34577999999999999765 99   99999999999999999999999999999996 589999999999999999997


Q ss_pred             CCCCCcCce
Q psy14668        181 WPEIDEDFI  189 (266)
Q Consensus       181 ypGIpek~I  189 (266)
                        |++.+++
T Consensus        93 --G~~~k~~   99 (101)
T TIGR01158        93 --GFKVKLI   99 (101)
T ss_pred             --CCCeeec
Confidence              9998765

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.

>PRK07451 translation initiation factor Sui1; Validated

Probab=99.82  E-value=9.3e-21  Score=154.85  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=74.9

Q ss_pred             ccccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhh
Q psy14668        101 VSHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE  179 (266)
Q Consensus       101 ~etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~e  179 (266)
                      .+++|+++|++||..++++|+ |+   ||+|+||...+.|+++|||.||++|||||||+ +++|+|||||+++|.++|.+
T Consensus        30 ~~~~~~~~~~irI~~~r~gR~GK~---VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvk-d~~IelQGD~r~~v~~~L~~  105 (115)
T PRK07451         30 VPDLPPQQQNLRVQATRSGRKGKT---VTVITGFQHKPETLAKLLKQLKTQCGSGGTVK-DNTIEIQGDHRQKILEILIK  105 (115)
T ss_pred             cCCCCccceeEEEEEEecCCCCCe---EEEEeCCCCCHHHHHHHHHHHHHHhcCCceEc-CCEEEEcCcHHHHHHHHHHH
Confidence            467899999999999999987 99   99999999999999999999999999999996 48999999999999999999


Q ss_pred             hCCCCCcC
Q psy14668        180 KWPEIDED  187 (266)
Q Consensus       180 KypGIpek  187 (266)
                      +  |+..+
T Consensus       106 ~--Gf~~k  111 (115)
T PRK07451        106 L--GYKAK  111 (115)
T ss_pred             C--CCeEe
Confidence            8  77654

>PRK09019 translation initiation factor Sui1; Validated

Probab=99.82  E-value=1.2e-20  Score=152.77  Aligned_cols=82  Identities=18%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             cccccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhh
Q psy14668        100 SVSHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIP  178 (266)
Q Consensus       100 e~etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~  178 (266)
                      +.+++|+++|.+|++.++++|+ |+   ||+|+||...+.|+++|||.||++|||||||++ ++|+|||||+++|.++|.
T Consensus        22 ~~~~~~~~~~~vri~~~r~gRkGK~---VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-~~IelQGD~r~~v~~~L~   97 (108)
T PRK09019         22 AKPERPKGDGIVRIQRQTSGRKGKG---VCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLE   97 (108)
T ss_pred             ccCcCCCcCceEEEEEecCCCCCCe---EEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-CEEEEcCcHHHHHHHHHH
Confidence            4567889999999999999987 99   999999999999999999999999999999974 899999999999999999


Q ss_pred             hhCCCCCcC
Q psy14668        179 EKWPEIDED  187 (266)
Q Consensus       179 eKypGIpek  187 (266)
                      ++  |+..+
T Consensus        98 ~~--Gf~~k  104 (108)
T PRK09019         98 AK--GMKVK  104 (108)
T ss_pred             HC--CCeEE
Confidence            88  77553

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []

Probab=99.80  E-value=9.3e-20  Score=137.67  Aligned_cols=77  Identities=29%  Similarity=0.343  Sum_probs=63.5

Q ss_pred             cccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeec----CCcEEEEcCCchhHHHHhhhhhC
Q psy14668        106 KNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       106 knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVk----g~~EI~IQGD~rdkV~elL~eKy  181 (266)
                      +..+..+|..++++.+|.   ||+|+||+.|++|++++||+|+++|||||||.    ++++|+||||++++|.++|.++|
T Consensus         2 ~~~~~I~I~~e~r~~~K~---vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~   78 (83)
T PF01253_consen    2 KEPPKIHIRVEKRRGRKF---VTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG   78 (83)
T ss_dssp             S-TTCEEEEEEESSSSEE---EEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC
T ss_pred             CCCCEEEEEEEeCcCCeE---EEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC
Confidence            356788888888877899   89999999999999999999999999999994    25899999999999999999997


Q ss_pred             CCCCc
Q psy14668        182 PEIDE  186 (266)
Q Consensus       182 pGIpe  186 (266)
                       ++|+
T Consensus        79 -~~~k   82 (83)
T PF01253_consen   79 -GIPK   82 (83)
T ss_dssp             -SSE-
T ss_pred             -CCCC
Confidence             5553

SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.

>PRK06824 translation initiation factor Sui1; Validated

Probab=99.79  E-value=7.5e-20  Score=149.99  Aligned_cols=80  Identities=15%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             cccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhh
Q psy14668        102 SHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK  180 (266)
Q Consensus       102 etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eK  180 (266)
                      .++|+++|.+||+.++++|+ |+   ||+|+||...+.|+++|||.||++|||||||++ ++|+|||||+++|.++|.++
T Consensus        34 ~~~~~~~~~vri~~~~kgr~gK~---VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-~~IeiQGD~r~~v~~~L~~~  109 (118)
T PRK06824         34 AAAPAGDGIVRVRRETKGRGGKT---VTVITGVPLAEDALKELAKELKRRCGTGGTLKD-GVIEIQGDHVELLLAELLKR  109 (118)
T ss_pred             ccCCCcCceEEEEEEEccCCCce---EEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-CEEEEcCcHHHHHHHHHHHC
Confidence            45677888999999999877 99   999999999999999999999999999999974 89999999999999999998


Q ss_pred             CCCCCcC
Q psy14668        181 WPEIDED  187 (266)
Q Consensus       181 ypGIpek  187 (266)
                        |+..+
T Consensus       110 --G~~~k  114 (118)
T PRK06824        110 --GFKAK  114 (118)
T ss_pred             --CCeEe
Confidence              77654

>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic

Probab=99.73  E-value=3.1e-18  Score=139.02  Aligned_cols=79  Identities=18%  Similarity=0.231  Sum_probs=67.9

Q ss_pred             cceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecC----CcEEEEcCCchhHHHHhhhhhCCC
Q psy14668        108 KKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPE  183 (266)
Q Consensus       108 KQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg----~~EI~IQGD~rdkV~elL~eKypG  183 (266)
                      ++...|..++|+.+|+   ||+|+||. .++||+++||.||++|||||||++    +++|+||||++++|.++|.++  |
T Consensus        25 ~~~I~Iri~qR~grK~---VTiI~Gl~-~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~--g   98 (110)
T TIGR01160        25 SNYIHIRIQQRNGRKT---LTTVQGLP-KEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQ--G   98 (110)
T ss_pred             cceEEEEEEEccCCcc---EEEEeccC-ChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHc--C
Confidence            4455666666666688   99999999 599999999999999999999984    269999999999999999998  6


Q ss_pred             -CCcCceEEc
Q psy14668        184 -IDEDFIEDL  192 (266)
Q Consensus       184 -Ipek~Ievl  192 (266)
                       +++++|.+.
T Consensus        99 ~~~~~~i~vh  108 (110)
T TIGR01160        99 LLKKDQIKIH  108 (110)
T ss_pred             CCCHHHeeec
Confidence             688888774

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.

>KOG2522|consensus

Probab=99.37  E-value=2.8e-13  Score=132.38  Aligned_cols=86  Identities=14%  Similarity=0.230  Sum_probs=76.7

Q ss_pred             eeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeec-----CCcEEEEcCCchhHHHHhhhhhCCCCC
Q psy14668        111 ASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVT-----GDDEIVIQGDVKDDLFDVIPEKWPEID  185 (266)
Q Consensus       111 LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVk-----g~~EI~IQGD~rdkV~elL~eKypGIp  185 (266)
                      .+++.++|..+|.   ||+|+|||.|++|+..+|..|+++|+|+.||.     ++-|++|||++.+-|+++|.+.| |||
T Consensus       469 i~i~te~RagnKk---VT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~y-gip  544 (560)
T KOG2522|consen  469 IKIITEMRAGNKK---VTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSY-GIP  544 (560)
T ss_pred             eEEeehhhccCce---EEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhh-CCC
Confidence            3455666655566   88999999999999999999999999999997     34799999999999999999999 999


Q ss_pred             cCceEEcCccCCCcc
Q psy14668        186 EDFIEDLGDLKSPTY  200 (266)
Q Consensus       186 ek~IevldkkKKkK~  200 (266)
                      .++|++.|+.+|||+
T Consensus       545 kK~I~gleka~Kkkk  559 (560)
T KOG2522|consen  545 KKWIDGLEKAKKKKK  559 (560)
T ss_pred             HHHHhHHHHhhcccC
Confidence            999999999998875

>KOG1770|consensus

Probab=99.07  E-value=2.5e-10  Score=93.88  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             cccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCC----cEEEEcCCchhHHHHhhhhhC
Q psy14668        106 KNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       106 knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~----~EI~IQGD~rdkV~elL~eKy  181 (266)
                      -.++..++..+.||-+|+   +|.|.|+-. +.|++.+-+.||++|||+|+|.++    +.|++|||+|++|.++|.+.-
T Consensus        25 g~~~~ihIRIQQRnGrKt---lTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g  100 (112)
T KOG1770|consen   25 GTEKYIHIRIQQRNGRKT---LTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG  100 (112)
T ss_pred             CccceEEEEEEeeCCceE---EEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc
Confidence            345599999999998899   777999976 789999999999999999999842    689999999999999999984


Q ss_pred             CCCCcCceEEc
Q psy14668        182 PEIDEDFIEDL  192 (266)
Q Consensus       182 pGIpek~Ievl  192 (266)
                       .+.+++|++.
T Consensus       101 -~~k~~~ikih  110 (112)
T KOG1770|consen  101 -LVKKDNIKIH  110 (112)
T ss_pred             -cccccceeec
Confidence             6788888764

>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.84  E-value=0.0033  Score=48.93  Aligned_cols=62  Identities=15%  Similarity=0.037  Sum_probs=45.8

Q ss_pred             eccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccce------eeec-CCcEEEEcCCchhHHHHhhhhh
Q psy14668        113 LMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACG------SSVT-GDDEIVIQGDVKDDLFDVIPEK  180 (266)
Q Consensus       113 v~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACG------gSVk-g~~EI~IQGD~rdkV~elL~eK  180 (266)
                      |-.+.++++ +.   +|+|.-.++   |+..|.+.|++-++-.      ..|. -.+.|+|+||++++|.++|.++
T Consensus        16 VY~~~k~~g~~~---~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~~~Vk~wL~~~   85 (87)
T PF05046_consen   16 VYLDIKNGGNRK---ITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHVEEVKKWLLEK   85 (87)
T ss_pred             EEEEEeCCCcEe---EEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccHHHHHHHHHHC
Confidence            444555555 66   555666666   8899999999888633      3343 2489999999999999999887

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome

>PRK14444 acylphosphatase; Provisional

Probab=87.85  E-value=1.8  Score=33.91  Aligned_cols=62  Identities=11%  Similarity=0.067  Sum_probs=42.8

Q ss_pred             EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668        130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG  193 (266)
Q Consensus       130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld  193 (266)
                      |+|... |+-.-..++.++++++-.|.|+  .++  ||++||+- ++|.+|+..-..+=+...|+-++
T Consensus        10 v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~i~   75 (92)
T PRK14444         10 ISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWCYSGPSHARVERVE   75 (92)
T ss_pred             EEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence            677766 7788888999999999999998  234  99999995 44666665543232334454443

>KOG4034|consensus

Probab=83.18  E-value=1.4  Score=39.24  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=41.4

Q ss_pred             eeeccccCCCc-eeEeEeeeEeccCCC----CCCHHHHHHHHhccccceeeecC-CcEEEEcCCchhHHHHhhhhh
Q psy14668        111 ASLMGTTPPSK-KTVQKTSYTEAQFPL----SSDPIVASKFFGTRFACGSSVTG-DDEIVIQGDVKDDLFDVIPEK  180 (266)
Q Consensus       111 LKv~l~kknRk-KtI~kVT~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg-~~EI~IQGD~rdkV~elL~eK  180 (266)
                      |=+-++.++|+ |.   +|+|.-.|+-    ..||.+.-++.-++-=| .-|.. .++|.+-||+.+.|.++|.+|
T Consensus        96 lPVYl~~k~~G~k~---lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~VnelsgqI~~~g~~v~~vr~~L~eK  167 (169)
T KOG4034|consen   96 LPVYLDYKQRGNKI---LTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNELSGQIVLKGNHVDTVREWLQEK  167 (169)
T ss_pred             cceEEeeecCCcEE---EEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhhcceEEEeCChHHHHHHHHHHc
Confidence            33566778888 88   4555555552    23454444433332222 22321 279999999999999999998

>PRK14434 acylphosphatase; Provisional

Probab=82.08  E-value=3.6  Score=32.33  Aligned_cols=62  Identities=15%  Similarity=0.018  Sum_probs=41.8

Q ss_pred             EeccCCCCCCHHHHHHHHhcccc-ceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCC-cCceEEc
Q psy14668        130 TEAQFPLSSDPIVASKFFGTRFA-CGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEID-EDFIEDL  192 (266)
Q Consensus       130 IsGLE~FgIDLKeLAK~LKKKFA-CGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIp-ek~Ievl  192 (266)
                      |+|... |+=.-.....++++++ -.|.|.  .++  ||++||+-.+.|.+|+..-..|-| ...|+-+
T Consensus         8 v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v   75 (92)
T PRK14434          8 VSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYV   75 (92)
T ss_pred             EEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            566555 5666777888889999 999997  234  999999865556666554433444 4445443

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=82.04  E-value=1.6  Score=35.73  Aligned_cols=53  Identities=11%  Similarity=0.239  Sum_probs=43.5

Q ss_pred             eEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668        129 YTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       129 ~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy  181 (266)
                      +|.+|..-    .-|++-+.|.|...+|+.|++.+++..+|+|.+..+-++-+.++|
T Consensus        20 vi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~y   76 (110)
T smart00653       20 VIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRY   76 (110)
T ss_pred             EEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHH
Confidence            46666543    457889999999999999999766999999999988887777766

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []

Probab=80.30  E-value=2  Score=35.91  Aligned_cols=54  Identities=19%  Similarity=0.407  Sum_probs=42.3

Q ss_pred             eeEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668        128 SYTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       128 T~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy  181 (266)
                      |+|.+|...    .-|++-+.|.|...+|+.|++.+++..+|+|.|..+-++-+..+|
T Consensus        32 Tvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~f   89 (125)
T PF01873_consen   32 TVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDKF   89 (125)
T ss_dssp             EEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHHH
T ss_pred             eeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHHH
Confidence            346666643    348899999999999999999766999999999877666555554

Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	6e-08
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	9e-07
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	1e-06
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	1e-06

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Length = 108

 Score = 49.1 bits (117), Expect = 6e-08
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 134 FPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI 189
            P   D     K     FAC  ++       + I +QGD +  + + +  +   + +  I
Sbjct: 45  VPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG-LQKKNI 103

Query: 190 E 190
           +
Sbjct: 104 K 104

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Length = 101

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 134 FPLSSDPIVASKFFGTRFACGSSVTGDDE----IVIQGDVKDDLFDVIPEKWPEIDEDFI 189
            P   D     K++    +C +++  +DE    I + GD ++ +   + E+      D I
Sbjct: 38  IPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEG-IAAVDNI 96

Query: 190 E 190
            
Sbjct: 97  T 97

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 134 FPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEK 180
                D     K F  +FAC  +V       + I +QGD + ++   + E 
Sbjct: 63  IADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Length = 116

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 144 SKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180
           +     +  CG +V  D  I IQGD +D L  ++  K
Sbjct: 64  AAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	99.86
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	99.84
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	99.82
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	99.8
1gxu_A	91	Hydrogenase maturation protein HYPF; phosphatase,	82.52

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1

Probab=99.86  E-value=6.4e-23  Score=166.05  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             ccccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhh
Q psy14668        101 VSHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE  179 (266)
Q Consensus       101 ~etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~e  179 (266)
                      .+++|+++|.++|..++++|+ |+   ||+|+||+.|++|+++|||.||++|||||||++ ++|+||||++++|.++|.+
T Consensus        23 ~~~~p~~~~~V~I~~er~gR~GK~---VT~V~Gl~~~~~dlk~laK~LKkk~acgGtVk~-~~IeiQGD~r~~i~~~L~~   98 (116)
T 1d1r_A           23 APVRPKGDGVVRIQRQTSGRKGKG---VCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLEA   98 (116)
T ss_dssp             -----CCCCEEEEEECCCSSSSCC---CEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-SCEEECSCCHHHHHHHHHH
T ss_pred             ccCCCCCCCeEEEEEEeCCCCCCe---EEEEeCCcCchhhHHHHHHHHHHHhcCCcEEcC-CEEEEeCcHHHHHHHHHHH
Confidence            478899999999999977776 99   999999999999999999999999999999974 8999999999999999999


Q ss_pred             hCCCCCcCceEEcC
Q psy14668        180 KWPEIDEDFIEDLG  193 (266)
Q Consensus       180 KypGIpek~Ievld  193 (266)
                      +  |++.++|+.++
T Consensus        99 ~--G~~vk~i~~~~  110 (116)
T 1d1r_A           99 K--GMKVKLAGGLE  110 (116)
T ss_dssp             H--TCEECCCCCCC
T ss_pred             c--CCCcceecccc
Confidence            8  89888887665

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F

Probab=99.84  E-value=1.5e-21  Score=154.10  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=74.1

Q ss_pred             cccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCC----cEEEEcCCchhHHHHhhhhhC
Q psy14668        106 KNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       106 knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~----~EI~IQGD~rdkV~elL~eKy  181 (266)
                      +.++.++|..++|+.+|+   ||+|+||+ +++|+++|||.||++|||||||+++    ++|+||||++++|.++|.++ 
T Consensus        14 ~~~~~v~I~~~~R~g~K~---VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~-   88 (101)
T 2xzm_F           14 DFQTHIHIRVEQRRGRKC---FTTVEGIP-PEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEE-   88 (101)
T ss_dssp             CCSCCEEEEEEEEETTEE---EEEEECCC-TTSCTHHHHHHHHHHHTSCCCEEECSTTCEEEEEESCCHHHHHHHHHHH-
T ss_pred             CCCCeEEEEEEeccCCcc---EEEEecCC-CchhHHHHHHHHHHHhcCCeEEecCCCCceEEEEeCcHHHHHHHHHHHc-
Confidence            368889999999866799   99999999 9999999999999999999999842    39999999999999999998 


Q ss_pred             CCC-CcCceEEcC
Q psy14668        182 PEI-DEDFIEDLG  193 (266)
Q Consensus       182 pGI-pek~Ievld  193 (266)
                       |+ |+++|++..
T Consensus        89 -G~~~~~~I~vhg  100 (101)
T 2xzm_F           89 -GIAAVDNITIHG  100 (101)
T ss_dssp             -SSSCTTTEEECC
T ss_pred             -CCCCHHHEEEcC
Confidence             77 999999853

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.7e-20  Score=147.90  Aligned_cols=84  Identities=17%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             ccccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCC----cEEEEcCCchhHHHHhhhhh
Q psy14668        105 LKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEK  180 (266)
Q Consensus       105 ~knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~----~EI~IQGD~rdkV~elL~eK  180 (266)
                      ...++.+++..++|+.+|+   ||+|+||+. ++|+++|||.||++|||||||+++    ++|+||||++++|.++|.++
T Consensus        20 ~~~~~~V~Ir~~~R~g~K~---VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~   95 (108)
T 2ogh_A           20 TATSNYIHIRIQQRNGRKT---LTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQ   95 (108)
T ss_dssp             CCCSCSEEEEEECCSSSCC---EEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEEEccCCce---EEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHc
Confidence            3577889999988877799   999999996 999999999999999999999842    39999999999999999999


Q ss_pred             CCCCCcCceEEcC
Q psy14668        181 WPEIDEDFIEDLG  193 (266)
Q Consensus       181 ypGIpek~Ievld  193 (266)
                      . .+|+++|++.+
T Consensus        96 g-~~~~~~I~vhg  107 (108)
T 2ogh_A           96 L-GLQKKNIKIHG  107 (108)
T ss_dssp             H-TSCCSCEEECC
T ss_pred             C-CCCHHHEEEcC
Confidence            4 56999999864

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1

Probab=99.80  E-value=6.2e-20  Score=150.23  Aligned_cols=81  Identities=19%  Similarity=0.278  Sum_probs=73.0

Q ss_pred             cccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCC----cEEEEcCCchhHHHHhhhhhC
Q psy14668        106 KNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       106 knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~----~EI~IQGD~rdkV~elL~eKy  181 (266)
                      ++++.++|..++|+.+|+   ||+|+||+. ++|+++|||+||++|||||||+++    ++|+||||++++|.++|.++ 
T Consensus        39 g~~~~V~Ir~~~R~grK~---VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~-  113 (126)
T 2if1_A           39 GTEDYIHIRIQQRNGRKT---LTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI-  113 (126)
T ss_dssp             SCTTCEECCCCCSSSSCC---BCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH-
T ss_pred             CCCCeEEEEEEeecCCcc---EEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc-
Confidence            567888899988877799   999999998 999999999999999999999852    59999999999999999998 


Q ss_pred             CCC-CcCceEEc
Q psy14668        182 PEI-DEDFIEDL  192 (266)
Q Consensus       182 pGI-pek~Ievl  192 (266)
                       |+ ++++|++.
T Consensus       114 -G~~~~~~I~vh  124 (126)
T 2if1_A          114 -GLAKDDQLKVH  124 (126)
T ss_dssp             -TSSCTTTEECC
T ss_pred             -CCCChhhEEee
Confidence             87 68899874

>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A

Probab=82.52  E-value=3.5  Score=30.98  Aligned_cols=49  Identities=10%  Similarity=0.100  Sum_probs=41.9

Q ss_pred             EeccCCCCCCHHHHHHHHhccccceeeec--CCc-EEEEcCCchhHHHHhhhhh
Q psy14668        130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD-EIVIQGDVKDDLFDVIPEK  180 (266)
Q Consensus       130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~-EI~IQGD~rdkV~elL~eK  180 (266)
                      |+|..+ |+=.-.....++++++-.|.|.  .++ ||++||+- ++.++.|.+.
T Consensus        13 V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dGVei~~eG~~-~~f~~~l~~~   64 (91)
T 1gxu_A           13 IRGKVQ-GVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDP-EVFLVQLYQH   64 (91)
T ss_dssp             EEEECS-SSSHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCC-HHHHHHHHHT
T ss_pred             EEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCcEEEEEEECH-HHHHHHHhhC
Confidence            788766 8889999999999999999997  234 99999999 8888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1d1ra_	83	d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}	1e-07
d2if1a_	126	d.64.1.1 (A:) Eukaryotic translation initiation fa	2e-05

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 134 FPLS-SDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180
             L  ++    +     +  CG +V  D  I IQGD +D L  ++  K
Sbjct: 26  VDLDDAELTKLAAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK 72

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 134 FPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI 189
                D     K F  +FAC  +V       + I +QGD + ++   + E      +D +
Sbjct: 63  IADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG-LAKDDQL 121

Query: 190 E 190
           +
Sbjct: 122 K 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1d1ra_	83	YciH {Escherichia coli [TaxId: 562]}	99.8
d2if1a_	126	Eukaryotic translation initiation factor eIF-1 (SU	99.78
d1neea1	98	Translation initiation factor 2 beta, aIF2beta, N-	82.53

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.2e-21  Score=143.42  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             ccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhCCCCC
Q psy14668        107 NKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEID  185 (266)
Q Consensus       107 nKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKypGIp  185 (266)
                      .....|++.++++|+ |+   ||+|+||+.+++|++++||.||++|||||||+ ++||+|||||+++|.++|.++  |++
T Consensus         2 g~~~Vri~~e~kgR~GK~---VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsvk-~~~I~lQGd~~~~v~~~L~~~--G~~   75 (83)
T d1d1ra_           2 GDGVVRIQRQTSGRKGKG---VCLITGVDLDDAELTKLAAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK--GMK   75 (83)
T ss_dssp             CCCEEEEEECCCSSSSCC---CEEEECCCSCHHHHHHHHHHHTTSSSSCCBCC-SSCEEECSCCHHHHHHHHHHH--TCE
T ss_pred             CCeEEEEEEEcCCCCCCe---EEEEECCcCCHHHHHHHHHHHHHHhcCCEEEE-CCEEEEeCcHHHHHHHHHHHc--CCc
Confidence            456788999999987 99   99999999999999999999999999999996 589999999999999999998  776


Q ss_pred             cC
Q psy14668        186 ED  187 (266)
Q Consensus       186 ek  187 (266)
                      .+
T Consensus        76 ~K   77 (83)
T d1d1ra_          76 VK   77 (83)
T ss_dssp             EC
T ss_pred             ee
Confidence            54

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=146.90  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             ccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecC----CcEEEEcCCchhHHHHhhhhhCC
Q psy14668        107 NKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWP  182 (266)
Q Consensus       107 nKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg----~~EI~IQGD~rdkV~elL~eKyp  182 (266)
                      +++.+++..++|+.+|+   ||+|+||+ +++||+++||.||++|||||||++    .++|+||||++++|.++|.++. 
T Consensus        40 ~~~~I~I~~ekR~G~K~---VT~I~Gl~-~~~dlk~laK~lKk~~acggSVk~~~~~~~~I~IQGD~r~~v~~~L~~~g-  114 (126)
T d2if1a_          40 TEDYIHIRIQQRNGRKT---LTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG-  114 (126)
T ss_dssp             CTTCEECCCCCSSSSCC---BCEEBSCC-TTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHHT-
T ss_pred             CcceEEEEEEecCCCCC---eEEEECCC-CcccHHHHHHHHHHhcCCCceEEeCCCCCcEEEEcccHHHHHHHHHHHcC-
Confidence            44455666677776799   99999997 799999999999999999999984    2689999999999999999985 


Q ss_pred             CCCcCceEEc
Q psy14668        183 EIDEDFIEDL  192 (266)
Q Consensus       183 GIpek~Ievl  192 (266)
                      .+++++|++.
T Consensus       115 ~~~k~~I~vH  124 (126)
T d2if1a_         115 LAKDDQLKVH  124 (126)
T ss_dssp             SSCTTTEECC
T ss_pred             CCccccEEec
Confidence            5678888764

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.53  E-value=0.26  Score=36.40  Aligned_cols=53  Identities=15%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             eeEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668        128 SYTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  181 (266)
Q Consensus       128 T~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy  181 (266)
                      |++.+|...    .-|++-+.|.|.+.+||.|++. ++..+|+|.+..+.++-+..+|
T Consensus        39 Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~-~~~lii~G~~~~~~i~~~l~~y   95 (98)
T d1neea1          39 TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-GGRAILQGKFTHFLINERIEDY   95 (98)
T ss_dssp             EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-TTTEEEESSCSSSHHHHHHHHH
T ss_pred             EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe-CCEEEEEeeeCHHHHHHHHHHH
Confidence            446666544    4589999999999999999996 5889999999988887776665