Psyllid ID: psy14695

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MGSTLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA
cccHHHHHHHHHHcccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccEEEEEEccccccEEEEEccccHHHHHHHHcccEEEEEccccccccccccccEEEEEEEEEccHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEccEEEEEccccccccccEEEEEccccccccEEEEccc
cccHHHHHcccccccccccHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccEEEEEEEccccccEEEEEcccccHHHHHHHcccEEEEEEccccccccHcEEEEEEEEEEEEccHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEccEEEEEcccccccccEEEEEEcccccccEEEEEccc
MGSTLRNMAQRYQaglpqanpltnlaemtgiqkidpipadpmqlFKSWFThhselhsdsNLVANVMNVstaskdgrvnsRSLILRRLdedgfvimtdgrsskskdlkenpnaafTFLWINNVDGLYLARQIRIAGKVVQLEtsnwidiyeaePLFCKIRAYvchqgqpvdwdthkkNHDELLSKFEkgqhdlarpdhviayklfPTFMDFYESHGLKIADRLKYVrdnenakdwectriaa
MGSTLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVStaskdgrvnsrslilrrldedgfvimtdgrsskskdlkenPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFekgqhdlarPDHVIAYKLFPTFMDFYESHGLKIADrlkyvrdnenakdwectriaa
MGSTLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA
***************************MTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMN*************SLILRRLDEDGFVIM****************AAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWEC*****
******N***********************IQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVD*DTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA
********AQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA
*************AGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSTLRNMAQRYQAGLPQANPLTNLAEMTGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
A4JHA1214 Pyridoxine/pyridoxamine 5 yes N/A 0.854 0.962 0.305 5e-23
Q3KGY4215 Pyridoxine/pyridoxamine 5 yes N/A 0.788 0.883 0.312 8e-22
Q4KH71215 Pyridoxine/pyridoxamine 5 yes N/A 0.792 0.888 0.313 2e-21
Q13UP6213 Pyridoxine/pyridoxamine 5 yes N/A 0.854 0.967 0.275 2e-21
Q39DH2214 Pyridoxine/pyridoxamine 5 yes N/A 0.788 0.887 0.288 2e-21
B2SY78213 Pyridoxine/pyridoxamine 5 yes N/A 0.854 0.967 0.28 3e-21
A0K9Z1214 Pyridoxine/pyridoxamine 5 yes N/A 0.858 0.967 0.284 8e-21
Q1BU45214 Pyridoxine/pyridoxamine 5 yes N/A 0.858 0.967 0.284 8e-21
Q2S544215 Pyridoxine/pyridoxamine 5 yes N/A 0.800 0.897 0.315 8e-21
B1JXH8214 Pyridoxine/pyridoxamine 5 yes N/A 0.858 0.967 0.284 9e-21
>sp|A4JHA1|PDXH_BURVG Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=pdxH PE=3 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 20/226 (8%)

Query: 22  LTNLAEM------TGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDG 75
           +T LA++        + + D  P DP   F  WF    E  +      N M V+T   DG
Sbjct: 1   MTTLADLRINYSRASLDEADAAP-DPFVQFDRWF---KEALAAKLPEPNTMTVATVGADG 56

Query: 76  RVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAG 135
           R ++R L+++ +DE GFV  T+  S K  DL  NP+AA  F WI       L RQ+RI G
Sbjct: 57  RPSARILLIKAVDERGFVFFTNYESRKGHDLAANPHAALLFYWIE------LERQVRIEG 110

Query: 136 KVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVD-WDTHKKNHDELLSKFEKGQHDLAR 194
           ++ +  T      + + PL  +I A+   Q   +D   T +    E+ +++     +  R
Sbjct: 111 RIEKTSTDESDRYFASRPLGSRIGAWASEQSTVIDSRATLEAREKEVAARY---GENPPR 167

Query: 195 PDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIA 240
           P H   Y+L P  ++F++    ++ DRL Y RD+  A  W  +R+A
Sbjct: 168 PPHWGGYRLVPDAIEFWQGRPSRLHDRLLYTRDDAAATGWSISRLA 213
Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 5
>sp|Q3KGY4|PDXH_PSEPF Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas fluorescens (strain Pf0-1) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|Q4KH71|PDXH_PSEF5 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|Q13UP6|PDXH_BURXL Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia xenovorans (strain LB400) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|Q39DH2|PDXH_BURS3 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia sp. (strain 383) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|B2SY78|PDXH_BURPP Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|A0K9Z1|PDXH_BURCH Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain HI2424) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|Q1BU45|PDXH_BURCA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain AU 1054) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|Q2S544|PDXH_SALRD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=pdxH PE=3 SV=1 Back     alignment and function description
>sp|B1JXH8|PDXH_BURCC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Burkholderia cenocepacia (strain MC0-3) GN=pdxH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
328722061186 PREDICTED: pyridoxine/pyridoxamine 5'-ph 0.730 0.946 0.516 1e-46
340723606254 PREDICTED: pyridoxine/pyridoxamine 5'-ph 0.983 0.933 0.380 4e-43
350426260254 PREDICTED: pyridoxine-5'-phosphate oxida 0.983 0.933 0.368 2e-42
345498102218 PREDICTED: pyridoxine/pyridoxamine 5'-ph 0.875 0.967 0.421 9e-42
380022627223 PREDICTED: pyridoxine/pyridoxamine 5'-ph 0.788 0.852 0.370 3e-32
332016930185 Pyridoxine/pyridoxamine 5'-phosphate oxi 0.746 0.972 0.382 5e-30
91090149211 PREDICTED: similar to CG15343 CG15343-PA 0.809 0.924 0.334 1e-24
328776584128 PREDICTED: pyridoxine/pyridoxamine 5'-ph 0.473 0.890 0.478 8e-24
72014234283 PREDICTED: pyridoxine-5'-phosphate oxida 0.759 0.646 0.322 2e-22
393759832210 pyridoxamine 5'-phosphate oxidase [Alcal 0.784 0.9 0.306 7e-22
>gi|328722061|ref|XP_001947706.2| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/180 (51%), Positives = 123/180 (68%), Gaps = 4/180 (2%)

Query: 63  ANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNV 122
           A   +++T S  G+V+ RSLILRRLDEDGFV+MTDGRS KSKDL ENP A+  FLW++  
Sbjct: 10  AKAFSLATVSNTGKVSCRSLILRRLDEDGFVMMTDGRSRKSKDLAENPQASMLFLWLDQT 69

Query: 123 -DGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDEL 181
            D L   RQ+RI G V +L T N  ++Y+ EPLFCKIRA +C QG+ V+W+  K++HD+L
Sbjct: 70  SDNLPQTRQVRIEGTVNKLTTDNMKELYDIEPLFCKIRAQICEQGKVVEWEQLKRDHDQL 129

Query: 182 LSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA 241
             K  K    L +PDHV+AYKL P  ++FYE+ G KI DRL + +D  +   W+   IAA
Sbjct: 130 FDKVSKYNVQLPKPDHVVAYKLVPNVIEFYEAIGQKIGDRLLFTKDGIS---WQPKHIAA 186

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340723606|ref|XP_003400180.1| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350426260|ref|XP_003494383.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|345498102|ref|XP_003428149.1| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380022627|ref|XP_003695141.1| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase-like [Apis florea] Back     alignment and taxonomy information
>gi|332016930|gb|EGI57739.1| Pyridoxine/pyridoxamine 5'-phosphate oxidase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91090149|ref|XP_972091.1| PREDICTED: similar to CG15343 CG15343-PA [Tribolium castaneum] gi|270013748|gb|EFA10196.1| hypothetical protein TcasGA2_TC012391 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328776584|ref|XP_623931.2| PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|72014234|ref|XP_785156.1| PREDICTED: pyridoxine-5'-phosphate oxidase-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|393759832|ref|ZP_10348644.1| pyridoxamine 5'-phosphate oxidase [Alcaligenes faecalis subsp. faecalis NCIB 8687] gi|393161644|gb|EJC61706.1| pyridoxamine 5'-phosphate oxidase [Alcaligenes faecalis subsp. faecalis NCIB 8687] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
FB|FBgn0030029213 CG15343 [Drosophila melanogast 0.850 0.962 0.294 5.1e-19
CGD|CAL0000228269 PDX3 [Candida albicans (taxid: 0.813 0.728 0.293 8.3e-19
UNIPROTKB|Q5A6K4269 PDX3 "Putative uncharacterized 0.813 0.728 0.293 8.3e-19
TIGR_CMR|ECH_0931199 ECH_0931 "pyridoxamine 5'-phos 0.780 0.944 0.268 1.1e-18
TAIR|locus:2158814530 PPOX "pyridoxin (pyrodoxamine) 0.809 0.367 0.301 1.6e-18
POMBASE|SPAC1093.02231 SPAC1093.02 "pyridoxamine 5'-p 0.792 0.826 0.300 2.8e-18
MGI|MGI:2144151261 Pnpo "pyridoxine 5'-phosphate 0.734 0.678 0.292 5.8e-18
SGD|S000000239228 PDX3 "Pyridoxine (pyridoxamine 0.775 0.820 0.307 7.5e-18
RGD|621456261 Pnpo "pyridoxine 5'-phosphate 0.734 0.678 0.287 1.2e-17
DICTYBASE|DDB_G0278107227 DDB_G0278107 "pyridoxamine-pho 0.829 0.881 0.278 1.6e-17
FB|FBgn0030029 CG15343 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 64/217 (29%), Positives = 115/217 (52%)

Query:    29 TGIQKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLD 88
             + + KI+  P+DP++ FK      ++ H D  +    MN++T  ++  V +R+++ R L 
Sbjct:     3 SSLAKIEDFPSDPVEFFKEILQEAAKGHPDGFI--QEMNLATVDEEFGVLNRTVLYRGLT 60

Query:    89 EDGFVIMTDGRSSKS-KDLKENPNAAFTFLW--INNVDGLYLARQIRIAGKV-VQLETSN 144
             +D  V     R  ++ K+L+ NP A  TF    + +  G   A Q+R+ G   V+L+ S 
Sbjct:    61 QDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDKAGNQNAWQVRLIGATAVELDQSE 120

Query:   145 WIDIYEAEPLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLF 204
                ++  E L  +IR ++C  G+P+++D  K  HD+ L    +G+  + RP    A+K  
Sbjct:   121 MDALWAKENLAAQIRGHICPCGEPINYDDLKAKHDQFLLD-HRGK-SIERPASYTAWKFQ 178

Query:   205 PTFMDFYESHGL-KIADRLKYVRDNENAKDWECTRIA 240
             P   DF +  GL +IADR++Y R  ++ K W+   ++
Sbjct:   179 PQRWDFLKV-GLDQIADRVQY-RLQKDGK-WKSMHVS 212
GO:0008615 "pyridoxine biosynthetic process" evidence=IEA
GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010181 "FMN binding" evidence=IEA
CGD|CAL0000228 PDX3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A6K4 PDX3 "Putative uncharacterized protein PDX3" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0931 ECH_0931 "pyridoxamine 5'-phosphate oxidase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TAIR|locus:2158814 PPOX "pyridoxin (pyrodoxamine) 5'-phosphate oxidase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC1093.02 SPAC1093.02 "pyridoxamine 5'-phosphate oxidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
MGI|MGI:2144151 Pnpo "pyridoxine 5'-phosphate oxidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
SGD|S000000239 PDX3 "Pyridoxine (pyridoxamine) phosphate oxidase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
RGD|621456 Pnpo "pyridoxine 5'-phosphate oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278107 DDB_G0278107 "pyridoxamine-phosphate oxidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2S544PDXH_SALRD1, ., 4, ., 3, ., 50.31570.80080.8976yesN/A
Q04R37PDXH_LEPBJ1, ., 4, ., 3, ., 50.28980.80910.9112yesN/A
B7JZR4PDXH_CYAP81, ., 4, ., 3, ., 50.28010.80080.9103yesN/A
B1YVG1PDXH_BURA41, ., 4, ., 3, ., 50.27450.80080.9018yesN/A
B1J1C4PDXH_PSEPW1, ., 4, ., 3, ., 50.30150.73440.8232yesN/A
B1JXH8PDXH_BURCC1, ., 4, ., 3, ., 50.28440.85890.9672yesN/A
Q1LK07PDXH_RALME1, ., 4, ., 3, ., 50.28970.82150.9339yesN/A
A4JHA1PDXH_BURVG1, ., 4, ., 3, ., 50.30530.85470.9626yesN/A
B0JI39PDXH_MICAN1, ., 4, ., 3, ., 50.30040.78420.8831yesN/A
C3K863PDXH_PSEFS1, ., 4, ., 3, ., 50.30890.72610.8139yesN/A
A9AGI1PDXH_BURM11, ., 4, ., 3, ., 50.280.85890.9672yesN/A
Q3KGY4PDXH_PSEPF1, ., 4, ., 3, ., 50.31210.78830.8837yesN/A
Q8YXG5PDXH_NOSS11, ., 4, ., 3, ., 50.27570.82570.9299yesN/A
Q04ZE7PDXH_LEPBL1, ., 4, ., 3, ., 50.28980.80910.9112yesN/A
Q1BU45PDXH_BURCA1, ., 4, ., 3, ., 50.28440.85890.9672yesN/A
A0K9Z1PDXH_BURCH1, ., 4, ., 3, ., 50.28440.85890.9672yesN/A
A6V9E9PDXH_PSEA71, ., 4, ., 3, ., 50.30150.73440.8232yesN/A
Q0BCF1PDXH_BURCM1, ., 4, ., 3, ., 50.27940.80080.9018yesN/A
A5FWR6PDXH_ACICJ1, ., 4, ., 3, ., 50.26480.84640.9622yesN/A
Q13UP6PDXH_BURXL1, ., 4, ., 3, ., 50.27550.85470.9671yesN/A
B4E9I1PDXH_BURCJ1, ., 4, ., 3, ., 50.280.85890.9672yesN/A
Q4KH71PDXH_PSEF51, ., 4, ., 3, ., 50.31370.79250.8883yesN/A
A4VJR0PDXH_PSEU51, ., 4, ., 3, ., 50.30240.78830.8837yesN/A
B2SY78PDXH_BURPP1, ., 4, ., 3, ., 50.280.85470.9671yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.4.3LOW CONFIDENCE prediction!
3rd Layer1.4.3.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
TIGR00558190 TIGR00558, pdxH, pyridoxamine-phosphate oxidase 1e-31
PLN03049462 PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-p 2e-30
COG0259214 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coe 7e-29
PLN02918544 PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-p 2e-25
PRK05679195 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxid 1e-24
pfam0124388 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph 2e-10
>gnl|CDD|211586 TIGR00558, pdxH, pyridoxamine-phosphate oxidase Back     alignment and domain information 
 Score =  114 bits (288), Expect = 1e-31
 Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 36/213 (16%)

Query: 40  DPMQLFKSWFTHHSELHSDSNLV-ANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDG 98
           DP++ F+ WF    E    + L   N M ++T   DGR ++R ++L+  DE GFV  T+ 
Sbjct: 1   DPIEQFERWFEEAIE----AELPEPNAMTLATVDADGRPSARIVLLKGFDERGFVFYTNY 56

Query: 99  RSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAE------ 152
            S K ++L  NP AA  F W +      L RQ+RI G+V ++         E++      
Sbjct: 57  ESRKGQELAANPKAALLFPWHS------LERQVRIEGRVEKVSRE------ESDAYFASR 104

Query: 153 PLFCKIRAYVCHQGQPVDWDTHKKNHDELLSKFEK-----GQHDLARPDHVIAYKLFPTF 207
           P   +I A+   Q +P+       + +EL  +F +        ++ RP+H   Y++ P  
Sbjct: 105 PRGSQIGAWASQQSRPIA------SREELEERFAELKARFPDGEVPRPEHWGGYRVVPDE 158

Query: 208 MDFYESHGLKIADRLKYVRDNENAKDWECTRIA 240
           ++F++    ++ DR +Y RD +    W   R+A
Sbjct: 159 IEFWQGRPSRLHDRFRYRRDGDG--SWRIERLA 189

This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 190
>gnl|CDD|215550 PLN03049, PLN03049, pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>gnl|CDD|223337 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|215496 PLN02918, PLN02918, pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>gnl|CDD|235555 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 100.0
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 100.0
KOG2586|consensus228 100.0
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 100.0
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 100.0
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 100.0
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 99.8
COG3871145 Uncharacterized stress protein (general stress pro 99.78
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.68
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.65
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.64
PF1059042 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-termina 99.61
COG5135245 Uncharacterized conserved protein [Function unknow 99.6
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.35
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.35
KOG4558|consensus251 99.21
COG5015132 Uncharacterized conserved protein [Function unknow 98.89
PRK03467144 hypothetical protein; Provisional 98.74
PRK06733151 hypothetical protein; Provisional 98.64
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 98.6
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 98.04
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 97.77
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.0
COG3576173 Predicted flavin-nucleotide-binding protein struct 95.23
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 94.32
COG3787145 Uncharacterized protein conserved in bacteria [Fun 93.01
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-68  Score=453.45  Aligned_cols=208  Identities=32%  Similarity=0.632  Sum_probs=197.0

Q ss_pred             hHHHHHHHhh-cCCCCCCCCCchhhhcCCCCCCCCC-CChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEE
Q psy14695          4 TLRNMAQRYQ-AGLPQANPLTNLAEMTGIQKIDPIP-ADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRS   81 (241)
Q Consensus         4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~   81 (241)
                      .+.+|.-.|- .||.+                .++. +||+.+|.+||++|+++++   .+|++|+|||||++|+|++|+
T Consensus         4 ~~a~~r~~y~~~~l~~----------------~d~~~~~P~~lF~~Wl~eA~~~~~---~ePnAm~lATvd~~G~P~~R~   64 (214)
T COG0259           4 VLANIRREYTKAGLRE----------------ADLPTANPLTLFRRWLEEAIRAEV---NEPNAMTLATVDEQGRPSSRI   64 (214)
T ss_pred             cchhhHHHhhhccccc----------------ccCCccCHHHHHHHHHHHHHhccc---CCCceeEEEeecCCCCceeeE
Confidence            5666766776 66666                4444 9999999999999999999   999999999999999999999


Q ss_pred             EEeeEEeCCeEEEEeCCCCccchhcccCCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEe
Q psy14695         82 LILRRLDEDGFVIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAY  161 (241)
Q Consensus        82 V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~  161 (241)
                      |+||++|+.||+||||+.|+|+++|++||+|++||+|+.      +.|||||+|+|++|+++++++||.+||++|||+||
T Consensus        65 VLLK~~DerGfvFyTN~~S~Kg~eLa~np~Aal~F~W~~------L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAW  138 (214)
T COG0259          65 VLLKELDERGFVFYTNYGSRKGRELAANPYAALLFPWKE------LERQVRVEGRVERVSDEESDAYFASRPRGSQIGAW  138 (214)
T ss_pred             EEecccCCCcEEEEeccCCcchhhHhhCcceeEEecchh------ccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchh
Confidence            999999999999999999999999999999999999999      99999999999999999999999999999999999


Q ss_pred             ecCCCCcC-ChHHHHHHHHHHHhhhccCCCCCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEec
Q psy14695        162 VCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIA  240 (241)
Q Consensus       162 ~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~  240 (241)
                      +|+||.|| +|.+|+++..++.++|.++  +||+|++||||+|.|+.|||||++++|+|+|++|.++++   .|+..||+
T Consensus       139 AS~QS~~i~~r~~Le~~~ae~~~kf~~~--~iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~~g---~W~~~RL~  213 (214)
T COG0259         139 ASKQSRPIASRAALEAKVAELTAKFADG--EIPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRRDDG---GWKIERLA  213 (214)
T ss_pred             hccCccccCCHHHHHHHHHHHHHhcCCC--CCCCCCCccceEeeeeEEEEecCCCccceeeEEEeecCC---CeEEEecC
Confidence            99999999 9999999999999999887  799999999999999999999999999999999999855   59999999


Q ss_pred             C
Q psy14695        241 A  241 (241)
Q Consensus       241 P  241 (241)
                      |
T Consensus       214 P  214 (214)
T COG0259         214 P  214 (214)
T ss_pred             C
Confidence            8

>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>KOG2586|consensus Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1 Back     alignment and domain information
>COG5135 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>KOG4558|consensus Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
1nrg_A261 Structure And Properties Of Recombinant Human Pyrid 5e-18
1ci0_A228 Pnp Oxidase From Saccharomyces Cerevisiae Length = 2e-17
3hy8_A261 Crystal Structure Of Human Pyridoxine 5'-Phosphate 5e-17
1g76_A218 X-Ray Structure Of Escherichia Coli Pyridoxine 5'-P 7e-14
1dnl_A199 X-Ray Structure Of Escherichia Coli Pyridoxine 5'-P 7e-13
1g77_A218 X-Ray Structure Of Escherichia Coli Pyridoxine 5`-P 7e-13
2a2j_A246 Crystal Structure Of A Putative Pyridoxine 5'-Phosp 5e-10
1ty9_A222 X-Ray Crystal Structure Of Phzg From Pseudomonas Fl 2e-09
1t9m_A214 X-Ray Crystal Structure Of Phzg From Pseudomonas Ae 2e-06
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human Pyridoxine-5'-Phosphate Oxidase Length = 261 Back     alignment and structure 
Iteration: 1

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 11/188 (5%)
Query: 40  DPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGR 99
           DP++ F +WF    +        AN M ++T ++DG+ ++R L+L+   +DGF   T+  
Sbjct: 57  DPVKQFAAWFEEAVQCPDIGE--ANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFE 114
Query: 100 SSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIR 159
           S K K+L  NP A+  F W        L RQ+R+ G V +L        + + P   +I 
Sbjct: 115 SRKGKELDSNPFASLVFYWEP------LNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIG 168
Query: 160 AYVCHQGQPV-DWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGLKI 218
           A V HQ   + D +  +K ++EL   ++    ++ +P     Y L+P  M+F++    ++
Sbjct: 169 AVVSHQSSVIPDREYLRKKNEELEQLYQ--DQEVPKPKSWGGYVLYPQVMEFWQGQTNRL 226
Query: 219 ADRLKYVR 226
            DR+ + R
Sbjct: 227 HDRIVFRR 234
>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae Length = 228 Back     alignment and structure
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase R229w Mutant Length = 261 Back     alignment and structure
>pdb|1G76|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5'-Phosphate Oxidase Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution Length = 218 Back     alignment and structure
>pdb|1DNL|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5'-Phosphate Oxidase Complexed With Fmn At 1.8 Angstrom Resolution Length = 199 Back     alignment and structure
>pdb|1G77|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine 5`-Phosphate Oxidase Complexed With Pyridoxal 5'-Phosphate At 2.0 A Resolution Length = 218 Back     alignment and structure
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate Oxidase (Rv2607) From Mycobacterium Tuberculosis Length = 246 Back     alignment and structure
>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Fluorescens Length = 222 Back     alignment and structure
>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Aeruginosa Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 6e-36
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 4e-35
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 5e-34
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 2e-33
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 3e-30
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 4e-24
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 1e-16
2hq7_A146 Protein, related to general stress protein 26(GS2 3e-09
2fhq_A141 Putative general stress protein; alpha-beta struct 3e-07
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 3e-07
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 4e-05
2re7_A134 Uncharacterized protein; general stress protein CO 5e-05
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Length = 222 Back     alignment and structure
 Score =  125 bits (317), Expect = 6e-36
 Identities = 42/211 (19%), Positives = 86/211 (40%), Gaps = 25/211 (11%)

Query: 35  DPIPADPMQLFKSWFTH--HSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGF 92
             +PADPM +  +W        +          + ++TA   GR ++R +++  + + G 
Sbjct: 31  QTLPADPMSVLHNWLERARRVGIRE-----PRALALATADSQGRPSTRIVVISEISDAGV 85

Query: 93  VIMTDGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAE 152
           V  T   S K ++L  NP A+    W         ++QI + G+ V+L  +   D +   
Sbjct: 86  VFSTHAGSQKGRELLHNPWASGVLYWRE------TSQQIILNGQAVRLPNAKADDAWLKR 139

Query: 153 PLFCKIRAYVCHQGQPVDWDTHKKNHDELLSK---FEKGQHDLARPDHVIAYKLFPTFMD 209
           P      + V  Q + +       +   + +      + Q  L RP+    ++L    ++
Sbjct: 140 PYATHPMSSVSRQSEELQ------DVQAMRNAARQLAELQGPLPRPEGYCVFELRLESLE 193

Query: 210 FYESHGLKIADRLKYVRDNENAKDWECTRIA 240
           F+ +   ++ +RL+Y R +     W   R+ 
Sbjct: 194 FWGNGQERLHERLRYDRSDTG---WNVRRLQ 221
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Length = 199 Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Length = 261 Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Length = 228 Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 246 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Length = 195 Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Length = 150 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Length = 141 Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Length = 150 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Length = 148 Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Length = 134 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 100.0
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 100.0
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 100.0
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 100.0
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 100.0
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 100.0
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 100.0
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.91
2qea_A160 Putative general stress protein 26; structural gen 99.91
2re7_A134 Uncharacterized protein; general stress protein CO 99.9
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.89
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.86
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.86
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.86
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.85
2hq7_A146 Protein, related to general stress protein 26(GS2 99.82
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.81
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.79
2fhq_A141 Putative general stress protein; alpha-beta struct 99.75
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.74
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.7
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.69
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.63
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 99.61
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.6
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.5
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.49
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 99.41
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.39
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.38
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.37
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.31
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.26
2hti_A185 BH0577 protein; structural genomics, joint center 99.23
2fur_A209 Hypothetical protein; structural genomics, joint c 99.19
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.16
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.15
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.08
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.08
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.03
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 99.02
3a6r_A122 FMN-binding protein; electron transport, flavoprot 98.41
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.18
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 97.97
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 97.32
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 95.67
3r5z_A145 Putative uncharacterized protein; split barrel-lik 95.43
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 95.1
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
Probab=100.00  E-value=9.7e-59  Score=405.24  Aligned_cols=198  Identities=26%  Similarity=0.540  Sum_probs=186.7

Q ss_pred             CCCCCCCCChHHHHHHHHHHHH-HhcCCCccccceEEEEeeC-CCCceeEEEEEeeEEeCCeEEEEeCCC-Cccchhccc
Q psy14695         32 QKIDPIPADPMQLFKSWFTHHS-ELHSDSNLVANVMNVSTAS-KDGRVNSRSLILRRLDEDGFVIMTDGR-SSKSKDLKE  108 (241)
Q Consensus        32 ~~~~~~~~~P~~lf~~Wl~~A~-~~~~~~~~~~~~~~LATv~-~dG~P~~R~V~lr~~d~~g~~F~T~~~-S~K~~eL~~  108 (241)
                      +.+++++.||+.+|..||++|+ +++.   .++++|+||||+ +||.|++|+|++++++++||+||||++ |+|++||++
T Consensus        26 l~~~~~~~~P~~~f~~wl~~A~~~~~~---~~~~~~~LATvd~~dG~P~~R~V~lk~~d~~g~~F~Tn~~~S~K~~eL~~  102 (228)
T 1ci0_A           26 LNEKQLTDDPIDLFTKWFNEAKEDPRE---TLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIAT  102 (228)
T ss_dssp             CCGGGCCSSHHHHHHHHHHHHHHCSSC---SCTTEEEEEEEETTTTEEEEEEEECCEECSSSEEEEEECSSSHHHHHHHH
T ss_pred             CChhhcCCChHHHHHHHHHHHHhhcCC---CCCCEEEEEEeeCCCCCeEEEEEEEEEECCCEEEEEeCCCCCcchHHHhh
Confidence            3447789999999999999999 7887   899999999999 999999999999999988999999999 999999999


Q ss_pred             CCcEEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhcc
Q psy14695        109 NPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEK  187 (241)
Q Consensus       109 NP~val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~  187 (241)
                      ||+|+|||+|+.      ..+||||+|+|++++++++++||++||++|||+||+|+||++| +|+.|++++.++.++|++
T Consensus       103 NP~val~f~~~~------~~rqVrI~G~ae~v~~~~~~~yf~~rp~~s~i~awas~qs~~i~~r~~l~~~~~~~~~~f~~  176 (228)
T 1ci0_A          103 NPNAAIVFFWKD------LQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTERFKD  176 (228)
T ss_dssp             CCEEEEEEEETT------TTEEEEEEEEEEECCHHHHHHHHHHSCHHHHHHHHHCCTTCEESCHHHHHHHHHHHHHHTTS
T ss_pred             CCeEEEEEEeCC------CCEEEEEEEEEEEcCchhhHHHHHhCCHHHhhceeeCCCCcccCCHHHHHHHHHHHHHhhcC
Confidence            999999999999      8999999999999999999999999999999999999999999 999999999999999987


Q ss_pred             CCCCCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcC-CCCCCceEEEecC
Q psy14695        188 GQHDLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDN-ENAKDWECTRIAA  241 (241)
Q Consensus       188 ~~~~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~-~~~~~W~~~rL~P  241 (241)
                      ++ ++|+|++||||+|+|++|||||++++|+|+|++|.++. +  ++|+.+||+|
T Consensus       177 ~~-~~p~p~~w~g~rv~P~~iEfWq~~~~rlHdR~~y~r~~~~--~~W~~~rL~P  228 (228)
T 1ci0_A          177 AE-DIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTEN--DPWKVVRLAP  228 (228)
T ss_dssp             CS-SCCCCTTEEEEEEEEEEEEEEECCTTSCCEEEEEECSSTT--SCCEEEEECC
T ss_pred             CC-CCCCCCcEEEEEEEccEEEEeeCCCCCcEEEEEEEecCCC--CCeEEEEecC
Confidence            62 39999999999999999999999999999999999962 2  2599999998
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d1dnla_199 b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP 2e-24
d1nrga_213 b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP 5e-23
d1ci0a_205 b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP 2e-22
d1t9ma_204 b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP 4e-20
d2a2ja1201 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase 9e-19
d2fhqa1135 b.45.1.1 (A:3-137) Putative general stress protein 2e-06
d2hq7a1141 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Cl 2e-05
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Length = 199 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

 Score = 94.1 bits (233), Expect = 2e-24
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 37  IPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMT 96
           +PADP+ LF+ W +   E           M V+T  + G+   R ++L+  DE G V  T
Sbjct: 8   LPADPLTLFERWLSQACEAKLAD---PTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYT 64

Query: 97  DGRSSKSKDLKENPNAAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFC 156
           +  S K+  ++ NP  +  F W          RQ+ + GK  +L T   +  + + P   
Sbjct: 65  NLGSRKAHQIENNPRVSLLFPWHTLE------RQVMVIGKAERLSTLEVMKYFHSRPRDS 118

Query: 157 KIRAYVCHQGQPVDWDTHKKNHDELLSKFEKGQHDLARPDHVIAYKLFPTFMDFYESHGL 216
           +I A+V  Q   +      ++    L K +  Q ++  P     +++    ++F++    
Sbjct: 119 QIGAWVSKQSSRISARGILESKFLEL-KQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEH 177

Query: 217 KIADRLKYVRDNENAKDWECTRIA 240
           ++ DR  Y R+N+    W+  R+A
Sbjct: 178 RLHDRFLYQRENDA---WKIDRLA 198
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 204 Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 201 Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 135 Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Length = 141 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 100.0
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 100.0
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 100.0
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 100.0
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 100.0
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.91
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.91
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.9
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.74
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.67
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.67
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.5
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.45
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.42
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.28
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.25
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 98.82
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 98.75
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 98.43
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 98.0
d2ptfa1206 Uncharacterized protein MTH863 {Methanobacterium t 87.76
d2imla1189 Hypothetical protein AF1834 {Archaeoglobus fulgidu 82.62
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Pyridoxine 5'-phoshate oxidase (PNP oxidase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-60  Score=407.14  Aligned_cols=196  Identities=27%  Similarity=0.520  Sum_probs=188.8

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHhcCCCccccceEEEEeeCCCCceeEEEEEeeEEeCCeEEEEeCCCCccchhcccCCc
Q psy14695         32 QKIDPIPADPMQLFKSWFTHHSELHSDSNLVANVMNVSTASKDGRVNSRSLILRRLDEDGFVIMTDGRSSKSKDLKENPN  111 (241)
Q Consensus        32 ~~~~~~~~~P~~lf~~Wl~~A~~~~~~~~~~~~~~~LATv~~dG~P~~R~V~lr~~d~~g~~F~T~~~S~K~~eL~~NP~  111 (241)
                      +++++++.||+++|..||++|++++.   .+|++|+|||||++|.|++|+|+||+++++||+||||++|+|+.||++||+
T Consensus         3 l~~~~~~~~P~~~f~~w~~~A~~~~~---~~p~A~~LATvd~~g~P~~RtV~lr~~~~~g~~F~Tn~~S~K~~el~~Np~   79 (199)
T d1dnla_           3 LRRRDLPADPLTLFERWLSQACEAKL---ADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPR   79 (199)
T ss_dssp             CCGGGCCSSHHHHHHHHHHHHHHTTC---SCTTEEEEEEECTTSCEEEEEEECCEEETTEEEEEEETTSHHHHHHHHCCE
T ss_pred             CChhhCCCCHHHHHHHHHHHHHHcCC---CCCCEEEEEEECCCCCEecceeehhhcccCceEEEecccchhhhhhhcCCc
Confidence            44588999999999999999999999   999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCcCCcccceeEEEEEEEEEeCCcchHhhhccCCccceeeEeecCCCCcC-ChHHHHHHHHHHHhhhccCCC
Q psy14695        112 AAFTFLWINNVDGLYLARQIRIAGKVVQLETSNWIDIYEAEPLFCKIRAYVCHQGQPV-DWDTHKKNHDELLSKFEKGQH  190 (241)
Q Consensus       112 val~f~~~~~~~~~~~~rQVri~G~a~~~~~~~~~~~f~~rp~~s~i~a~~s~qs~~i-~r~~l~~~~~~~~~~~~~~~~  190 (241)
                      |+|||||++      +.+||||+|+|++++++++++||++||+++|+++|+|.||++| +++.|+...+.+..+|.+.  
T Consensus        80 asl~f~w~~------~~rQiRi~G~~~~~~~~~sd~~f~~rp~~sqi~a~~s~Qs~~i~~~~~l~~~~~~~~~~~~~~--  151 (199)
T d1dnla_          80 VSLLFPWHT------LERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQG--  151 (199)
T ss_dssp             EEEEECCGG------GTEEEEEEEEEEECCHHHHHHHHTTSCHHHHHHHHHCCTTSCCSCTHHHHHHHHHHHHHSTTS--
T ss_pred             eEEEEeecc------hheeeEEEEEeeecccHHHHhHhhccCccceeeeeccccccccccHHHHHHHHHHHHhhcccC--
Confidence            999999999      9999999999999999999999999999999999999999999 9999999999999888765  


Q ss_pred             CCCCCCceEEEEEEeeEEEEeecCCCCceeEEEEEEcCCCCCCceEEEecC
Q psy14695        191 DLARPDHVIAYKLFPTFMDFYESHGLKIADRLKYVRDNENAKDWECTRIAA  241 (241)
Q Consensus       191 ~~p~p~~w~~~~l~P~~iEfw~~~~~r~h~R~~y~~~~~~~~~W~~~rL~P  241 (241)
                      ++|+|++|+||+|.|++||||+++++|+|+|++|.++++   .|+.++|+|
T Consensus       152 ~~p~p~~w~g~~l~P~~iEfw~~~~~rlH~R~~y~~~~~---~W~~~~L~P  199 (199)
T d1dnla_         152 EVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQREND---AWKIDRLAP  199 (199)
T ss_dssp             SCCCCTTEEEEEECCSEEEEEECCGGGCCEEEEEEECSS---SEEEEECCC
T ss_pred             CCCCCCceEEEEEeccEEEEeCCCCCCCeeEEEEEEcCC---cEEEEEecC
Confidence            799999999999999999999999999999999999875   499999998
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure