Psyllid ID: psy14728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MDVETVPNTDEVDNDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccHHHHHHHHHHcccccEEccccc
Secondary Structure Prediction (SSPRO)
cccHcccccHHHHHHccHHcccccccHHHHccccccHHHHHcccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHcccccccEEEcccccccccHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccEcHHHcccccccEEEcccccccccHHHHHcccccEEcEEEEccccccccHHHHHHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
mdvetvpntdevdndnlVTLNVEAVEnthgnqmsldnpdeeseaetteskaedeeSKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLcsnkiskienvdhlkklkvlelgdnKIRIIENLdgltnleelylgknkisrIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEfwindnqvsdwntVNVLENNKQLQTiyldrnpvaqdpnyrrkiklvCPWIVQIDATLA
Flexible Loop (DISEMBL)
mdvetvpntdevdndnlVTLNVEAVEnthgnqmsldnpdeESEAEtteskaedeeskeVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKiskienvdhlkklkvlelgdnKIRIIenldgltnleeLYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQlqtiyldrnpvaqdpnyrrkiklvcpWIVQIDATLA
Low Complexity Region (SEG)
MDVETVPNTDEVDNDNLVTLNVEAVENTHGNQMSLDNPdeeseaetteskaedeeskeVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA
Disordered region (IsUnstruct)
**********************************************************VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA***
Disordered Region (DISOPRED)
****TVP***************************LDNPDEESEAE********EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA
Disordered Region (DISEMBL)
*********DEVDNDNLVTLNVEAVENTHGN**************************EVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA
Disordered Region (DISPRO)
MDVETVPNTDEVDNDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVETVPNTDEVDNDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	319	2.2.26 [Sep-21-2011]
Q3T0W4	360	Protein phosphatase 1 reg	yes	N/A	0.811	0.719	0.555	2e-76
Q3UM45	361	Protein phosphatase 1 reg	yes	N/A	0.805	0.711	0.556	3e-76
Q15435	360	Protein phosphatase 1 reg	yes	N/A	0.811	0.719	0.559	5e-76
Q5HZV9	360	Protein phosphatase 1 reg	yes	N/A	0.811	0.719	0.548	2e-75
Q5RFS7	360	Protein phosphatase 1 reg	yes	N/A	0.811	0.719	0.552	4e-75
Q6DIQ3	346	Protein phosphatase 1 reg	yes	N/A	0.811	0.748	0.555	3e-74
Q32PL1	345	Protein phosphatase 1 reg	yes	N/A	0.793	0.733	0.545	5e-69
P45969	326	Uncharacterized protein T	yes	N/A	0.924	0.904	0.465	8e-58
P22194	332	Protein phosphatase 1 reg	yes	N/A	0.802	0.771	0.461	5e-52
Q54Q39	336	Protein phosphatase 1 reg	yes	N/A	0.808	0.767	0.448	9e-49

>sp|Q3T0W4|PP1R7_BOVIN Protein phosphatase 1 regulatory subunit 7 OS=Bos taurus GN=PPP1R7 PE=1 SV=1

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/259 (55%), Positives = 196/259 (75%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENLD L  LE+LD+SFN +R I+G
Sbjct: 100 VKTLCLRQNLIKCIENLEGLQSLRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEG 159

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +D L  L+KL+L +NKI+KIEN+  L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct: 160 IDKLTRLKKLFLVNNKINKIENISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+++ NL +LT L +LS+Q NRL  IE L++L NL +LYLS NG+  IE L +N KL  L
Sbjct: 220 ITKLQNLDALTNLTVLSMQSNRLTKIEGLQSLVNLRELYLSHNGIEVIEGLDNNNKLTML 279

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N+I  I+N++HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct: 280 DIASNRIKKIENVSHLTELQEFWMNDNLLDCWSDLDELKGARSLETVYLERNPLQRDPQY 339

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRKI L  P + QIDAT  
Sbjct: 340 RRKIMLALPSVRQIDATFV 358

Regulatory subunit of protein phosphatase 1. Inactivates the PPP1CC isoform 2 during epididymal sperm maturation.
Bos taurus (taxid: 9913)

>sp|Q3UM45|PP1R7_MOUSE Protein phosphatase 1 regulatory subunit 7 OS=Mus musculus GN=Ppp1r7 PE=1 SV=2

 Score =  285 bits (729), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 143/257 (55%), Positives = 197/257 (76%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LE+LD+SFN +R I+G
Sbjct: 101 VKSLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEG 160

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +D L  L+KL+L +NKI+KIEN+ +L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct: 161 IDKLTQLKKLFLVNNKINKIENISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 220

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+++ NL +LT L +LS+Q NRL  IE L++L NL +LYLS NG+  IE L +N KL  L
Sbjct: 221 ITKLQNLDALTNLTVLSVQSNRLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTML 280

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N+I  I+NI+HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct: 281 DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 340

Query: 301 RRKIKLVCPWIVQIDAT 317
           RRK+ L  P + QIDAT
Sbjct: 341 RRKVMLALPSVRQIDAT 357

Regulatory subunit of protein phosphatase 1.

Mus musculus (taxid: 10090)

>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1

 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 145/259 (55%), Positives = 196/259 (75%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LEILD+SFN +R I+G
Sbjct: 100 VKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEG 159

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +D L  L+KL+L +NKISKIEN+ +L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct: 160 VDKLTRLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+++ NL +LT L +LS+Q NRL  IE L+ L NL +LYLS NG+  IE L +N KL  L
Sbjct: 220 ITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTML 279

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N+I  I+NI+HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct: 280 DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 339

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+ L  P + QIDAT  
Sbjct: 340 RRKVMLALPSVRQIDATFV 358

Regulatory subunit of protein phosphatase 1.

Homo sapiens (taxid: 9606)

>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus GN=Ppp1r7 PE=1 SV=1

 Score =  283 bits (723), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/259 (54%), Positives = 196/259 (75%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LE+LD+SFN +R I+G
Sbjct: 100 VKSLCLRQNLIKCIENLDELQSLRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEG 159

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +D L  L+KL+L +NKI+KIEN+  L++L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct: 160 IDKLTQLKKLFLVNNKINKIENISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+++ NL +L+ L +LS+Q NRL  IE L+ L NL +LYLS NG+  IE L +N KL  L
Sbjct: 220 ITKLQNLDALSNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTML 279

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N+I  I+NI+HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct: 280 DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 339

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+ L  P + QIDAT  
Sbjct: 340 RRKVMLALPSVRQIDATFV 358

Regulatory subunit of protein phosphatase 1.

Rattus norvegicus (taxid: 10116)

>sp|Q5RFS7|PP1R7_PONAB Protein phosphatase 1 regulatory subunit 7 OS=Pongo abelii GN=PPP1R7 PE=2 SV=1

 Score =  281 bits (719), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/259 (55%), Positives = 195/259 (75%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LEILD+SFN +R I+G
Sbjct: 100 VKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEG 159

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +D +  L+KL+L +NKISKIEN+ +L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct: 160 VDKVTQLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+++ NL +LT L +LS+Q NRL  IE L+ L NL +LYLS NG+  IE L +N KL  L
Sbjct: 220 ITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLQELYLSHNGIEVIEGLENNNKLTML 279

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N+I  I+NI+HLTE QEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct: 280 DIASNRIKKIENISHLTEPQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 339

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+ L  P + QIDAT  
Sbjct: 340 RRKVMLALPSVRQIDATFV 358

Regulatory subunit of protein phosphatase 1.

Pongo abelii (taxid: 9601)

>sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7 OS=Xenopus tropicalis GN=ppp1r7 PE=2 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 144/259 (55%), Positives = 193/259 (74%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR NLIK IEN+  L TL EL+LYDNQ+  I NL+TL +L+ILDLSFN +R I+G
Sbjct: 86  VKTLCLRQNLIKLIENLEQLVTLTELDLYDNQIRKIGNLETLRDLQILDLSFNLLRRIEG 145

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L+ L++L++LYL +NKIS+IEN   L +L++LELG N++R+IENLD L  L+ L+LGKNK
Sbjct: 146 LESLSHLQRLYLVNNKISRIENFGTLTQLRLLELGSNRLRVIENLDSLRELDSLFLGKNK 205

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+++ NL +LT L +LS+Q NRL  IE L+ L NL +LYLS+NG+  IE L +N KL TL
Sbjct: 206 ITKLQNLETLTNLTVLSVQSNRLTKIEGLQNLVNLRELYLSDNGIQVIEGLENNNKLTTL 265

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N+I  I+NI HL+ELQEFW+NDN V +W+ +  L     LQT+YL+RNP+ +D  Y
Sbjct: 266 DLASNRIKRIENIKHLSELQEFWMNDNLVENWSDLEELSGAPGLQTVYLERNPLQKDAQY 325

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRKI L  P + QIDAT  
Sbjct: 326 RRKIMLALPSVRQIDATFV 344

Regulatory subunit of protein phosphatase 1.

Xenopus tropicalis (taxid: 8364)

>sp|Q32PL1|PP1R7_DANRE Protein phosphatase 1 regulatory subunit 7 OS=Danio rerio GN=ppp1r7 PE=2 SV=1

 Score =  261 bits (667), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 192/253 (75%)

Query: 66  LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA 125
           LR NLIK+IEN+  L +L+EL+LYDNQ+  +ENL  L  LE LD+SFN +R+I+GLD L 
Sbjct: 90  LRQNLIKRIENLESLVSLRELDLYDNQIRKLENLQALTELEQLDVSFNLLRKIEGLDSLT 149

Query: 126 NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRID 185
            ++KL+L  NKI+ I N+DHL  L++LELG N+IR+IENLD L++LE L+LG NKI+++ 
Sbjct: 150 KVKKLFLLHNKIASIANLDHLTSLQMLELGSNRIRVIENLDSLSSLESLFLGTNKITQLQ 209

Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
           NL  L  L +LS+Q NR+  +E L+ L NL +LYLS NG+  +E L +N+KL TLD+A N
Sbjct: 210 NLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSHNGIEVMEGLENNKKLSTLDIAAN 269

Query: 246 KISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIK 305
           +I  I+NI+HLT+L+EFW+NDNQ+ +W  ++ L+N K L+T+YL+RNP+ +DP YRRKI 
Sbjct: 270 RIKKIENISHLTDLKEFWMNDNQIENWADLDELKNAKGLETVYLERNPLQKDPQYRRKIM 329

Query: 306 LVCPWIVQIDATL 318
           L  P + QIDAT 
Sbjct: 330 LALPSVRQIDATF 342

Regulatory subunit of protein phosphatase 1.

Danio rerio (taxid: 7955)

>sp|P45969|YNZ9_CAEEL Uncharacterized protein T09A5.9 OS=Caenorhabditis elegans GN=T09A5.9 PE=4 SV=1

 Score =  224 bits (570), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 140/301 (46%), Positives = 192/301 (63%), Gaps = 6/301 (1%)

Query: 23  EAVENTHGNQMSLDNPDEES-EAETTESKAE--DEESKEVCIERLLLRWNLIKKIE-NIH 78
           E+ E    NQ  L   D +S E + T ++A+   + +    IE L +R NL+  I   I 
Sbjct: 19  ESKEPVLKNQFDLSTFDIDSPEIDLTHTRADHIPDLTGFPKIEELRMRNNLLVSISPTIS 78

Query: 79  MLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138
            L TL  L+LY+NQLT I +L++L+NL  LDLS+NRIR+I GLD L  LE LYL SNKI 
Sbjct: 79  SLVTLTSLDLYENQLTEISHLESLVNLVSLDLSYNRIRQINGLDKLTKLETLYLVSNKIE 138

Query: 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           KIEN++ L +LK+LELGDN+I+ IEN+  L NL+EL++GKNKI +++ + +L KL++LSL
Sbjct: 139 KIENLEALTQLKLLELGDNRIKKIENIGHLVNLDELFIGKNKIRQLEGVETLQKLSVLSL 198

Query: 199 QCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTE 258
             NR+  IEN+E L NL +LYLS+ GL  I  +     L  LDVA N+I     +  L  
Sbjct: 199 PGNRIVKIENVEQLNNLKELYLSDQGLQDIHGVEPLTNLLLLDVANNEIKTFSGVERLES 258

Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV-AQDPN-YRRKIKLVCPWIVQIDA 316
           L +FW NDN+V  ++ +  L   K LQT+YL+RNP    D N YRRK+ +    + QIDA
Sbjct: 259 LNDFWANDNKVESFSEIEQLSKLKGLQTVYLERNPFYFNDTNQYRRKVMMTLTQVTQIDA 318

Query: 317 T 317
           T
Sbjct: 319 T 319

Caenorhabditis elegans (taxid: 6239)

>sp|P22194|SDS22_SCHPO Protein phosphatase 1 regulatory subunit SDS22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sds22 PE=1 SV=2

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 121/262 (46%), Positives = 176/262 (67%), Gaps = 6/262 (2%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L LR N IKKIE++    TL EL+LYDN +  IENLD + NL  LDLSFN I+ I+ 
Sbjct: 64  LQSLCLRQNQIKKIESVP--ETLTELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRN 121

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           ++HL  LE L+   N+I +IEN++ L +L  LELG NKIR+IENLD L NLE+L++GKNK
Sbjct: 122 INHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNK 181

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTN-LTQLYLSENGLTTIENLLSNEKLET 239
           I++ +N   L KL++LS+Q NR+   ENL  L++ L +LY+S NGLT+   +   E LE 
Sbjct: 182 ITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEI 241

Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV-NVLENNKQLQTIYLDRNPVAQ-D 297
           LDV+ N I  +  +A L  L E W ++N++S +  + + L   K+L+T+Y + NP+ + +
Sbjct: 242 LDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTN 301

Query: 298 PN-YRRKIKLVCPWIVQIDATL 318
           P  YR K++L  P + QIDAT+
Sbjct: 302 PAVYRNKVRLCLPQLRQIDATI 323

Essential for the mitotic metaphase/anaphase transition. Positively modulates protein phosphatase-1. Possibly by forming a repeating helical rod that is capable of enhancing a PP1-dependent dephosphorylation activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54Q39|PP1R7_DICDI Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1

 Score =  194 bits (492), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 5/263 (1%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +++L  R NLI+KIENI  L  L+ L+LYDN+L VIEN+    +L  LDLSFN IR ++ 
Sbjct: 72  LKKLCFRQNLIEKIENIDQLKELESLDLYDNKLQVIENIKDFQSLTYLDLSFNEIRIVEN 131

Query: 121 LD--HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
           L    +  +++LYL +NKI+KIEN+  L  +K LELG N++R IENL+ L N+E L+LG+
Sbjct: 132 LSIKDIPKIKELYLANNKITKIENLQELVPIKNLELGSNRLREIENLENLVNIETLWLGR 191

Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIENLLSNEK 236
           NKI+ I  +  L+ L ILSLQ NRL  I  + L  L  L +LYLS NG+T I+ L S ++
Sbjct: 192 NKITEIKGINHLSHLRILSLQSNRLTEIGVKGLVGLNCLEELYLSHNGITDIDGLQSLKQ 251

Query: 237 LETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ 296
           L TLD++ NKI  +  +  L +L E W NDN V   + +   +  K ++ +Y +RNPVA 
Sbjct: 252 LRTLDISANKIKTLVGLNELPDLDEIWCNDNLVDSMDNIEQ-QVTKSIKCLYFERNPVAT 310

Query: 297 DPNYRRKIKLVCPWIVQIDATLA 319
              YRR    + P + Q+DAT+ 
Sbjct: 311 HVQYRRMFINMFPQLKQLDATMV 333

Regulatory subunit of protein phosphatase 1.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
158298793	329	AGAP009839-PA [Anopheles gambiae str. PE	0.811	0.787	0.648	5e-88
270012286	322	hypothetical protein TcasGA2_TC006409 [T	0.811	0.804	0.652	1e-87
91088689	320	PREDICTED: similar to phosphatase 1 regu	0.811	0.809	0.652	1e-87
157115257	332	protein phosphatases pp1 regulatory subu	0.818	0.786	0.639	2e-87
312383578	329	hypothetical protein AND_03257 [Anophele	0.811	0.787	0.629	2e-85
240849085	329	protein phosphatases pp1 regulatory subu	0.811	0.787	0.644	8e-85
156548260	318	PREDICTED: protein phosphatase 1 regulat	0.811	0.814	0.640	1e-84
170049759	321	phosphatase 1 regulatory subunit 7 [Cule	0.818	0.813	0.609	6e-83
307213325	322	Protein phosphatase 1 regulatory subunit	0.940	0.931	0.575	1e-81
307168558	327	Protein phosphatase 1 regulatory subunit	0.811	0.792	0.633	2e-81

>gi|158298793|ref|XP_318952.3| AGAP009839-PA [Anopheles gambiae str. PEST] gi|157014056|gb|EAA14303.4| AGAP009839-PA [Anopheles gambiae str. PEST]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 168/259 (64%), Positives = 208/259 (80%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +ERL LRWNLIKKIEN+  LT+L ELELYDNQ+T +ENLD L+NLE+LD+SFNR+ +IK 
Sbjct: 70  LERLYLRWNLIKKIENLDHLTSLLELELYDNQITELENLDNLVNLEMLDVSFNRLHQIKN 129

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NL KL+LC+N+IS IEN+DH   L +LELGDNKIR IENLD L++L  LYLGKNK
Sbjct: 130 LSALTNLRKLFLCANRISLIENLDHFSSLTMLELGDNKIRKIENLDNLSSLTHLYLGKNK 189

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I++I+NL  L KL  LSLQCNRL  IENL+ L NLT+LYLSENG+ TIENL  N++LETL
Sbjct: 190 ITKIENLDKLVKLECLSLQCNRLTKIENLDQLVNLTELYLSENGIETIENLDQNKQLETL 249

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A N++  I+NI HL  L+EFW+NDN VS+W  V+ L +NK+L T+YL+RNPVA D NY
Sbjct: 250 DLAKNRVKRIENIEHLEMLEEFWMNDNGVSEWTCVDKLASNKKLATVYLERNPVASDVNY 309

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+KL  PW+ +IDATL 
Sbjct: 310 RRKLKLAVPWLQKIDATLC 328

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012286|gb|EFA08734.1| hypothetical protein TcasGA2_TC006409 [Tribolium castaneum]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/259 (65%), Positives = 208/259 (80%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           IERL LRWNLI KIEN+  L TL+ELELYDNQ+  +ENL  L+NLEILDLSFNRI+EI+G
Sbjct: 62  IERLFLRWNLITKIENLDTLVTLRELELYDNQIVKMENLGCLVNLEILDLSFNRIKEIEG 121

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L++L NLEKL+L SNKISKI+NV HL+KL +LELGDNKIR IENL+ +  L  LYLGKNK
Sbjct: 122 LENLHNLEKLFLSSNKISKIKNVKHLQKLTMLELGDNKIRDIENLENMPALTHLYLGKNK 181

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS+I NL SLT +  LSLQ NR+  IENL+ LT LT+LY+SENG+  IENL  N  L+TL
Sbjct: 182 ISKIKNLDSLTNVTCLSLQSNRITRIENLDKLTQLTELYISENGIHKIENLTHNTLLQTL 241

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A NKI +I+NI HL +L+EFW+NDN+VSDW TV  L  NK+L T+YL+RNP+ +DP Y
Sbjct: 242 DLAKNKIKLIENIEHLNDLEEFWMNDNEVSDWGTVENLSKNKKLATVYLERNPLEKDPMY 301

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+K++ P + QIDATL 
Sbjct: 302 RRKLKMIAPSLTQIDATLC 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088689|ref|XP_974981.1| PREDICTED: similar to phosphatase 1 regulatory subunit 7 [Tribolium castaneum]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/259 (65%), Positives = 208/259 (80%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           IERL LRWNLI KIEN+  L TL+ELELYDNQ+  +ENL  L+NLEILDLSFNRI+EI+G
Sbjct: 60  IERLFLRWNLITKIENLDTLVTLRELELYDNQIVKMENLGCLVNLEILDLSFNRIKEIEG 119

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L++L NLEKL+L SNKISKI+NV HL+KL +LELGDNKIR IENL+ +  L  LYLGKNK
Sbjct: 120 LENLHNLEKLFLSSNKISKIKNVKHLQKLTMLELGDNKIRDIENLENMPALTHLYLGKNK 179

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS+I NL SLT +  LSLQ NR+  IENL+ LT LT+LY+SENG+  IENL  N  L+TL
Sbjct: 180 ISKIKNLDSLTNVTCLSLQSNRITRIENLDKLTQLTELYISENGIHKIENLTHNTLLQTL 239

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A NKI +I+NI HL +L+EFW+NDN+VSDW TV  L  NK+L T+YL+RNP+ +DP Y
Sbjct: 240 DLAKNKIKLIENIEHLNDLEEFWMNDNEVSDWGTVENLSKNKKLATVYLERNPLEKDPMY 299

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+K++ P + QIDATL 
Sbjct: 300 RRKLKMIAPSLTQIDATLC 318

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115257|ref|XP_001658167.1| protein phosphatases pp1 regulatory subunit [Aedes aegypti] gi|108883490|gb|EAT47715.1| AAEL001166-PA [Aedes aegypti]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/261 (63%), Positives = 207/261 (79%)

Query: 59  VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
           V +ERL LRWNLIKKIEN+  L  L+ELELYDNQ+T +ENLD L+NLE+LD+SFNRI +I
Sbjct: 71  VNLERLYLRWNLIKKIENLDHLIALQELELYDNQITKLENLDNLVNLEVLDISFNRIHKI 130

Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
           + LD L  L KLYLC+NKIS IEN+ HL  L +LELGDNK+R I++LD LTNL +LYLGK
Sbjct: 131 ENLDRLVKLSKLYLCANKISVIENIGHLSNLTMLELGDNKLRKIQHLDTLTNLTKLYLGK 190

Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
           NKI++I+NL  L  L  LSLQCNRL  IENL+ L NLT+LYLSENG+  IENL  N++L+
Sbjct: 191 NKITKIENLDKLVNLECLSLQCNRLVKIENLDKLVNLTELYLSENGIEKIENLDHNKQLD 250

Query: 239 TLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
           TLD+A N+I  I+N+AHL  L+EFW+NDN VSDW  V+VL  NK+L T+YL+RNP+A D 
Sbjct: 251 TLDLAKNRIKTIENVAHLECLEEFWMNDNSVSDWTCVDVLAANKKLATVYLERNPIASDS 310

Query: 299 NYRRKIKLVCPWIVQIDATLA 319
            YR+K+KL  PW+ QIDATL 
Sbjct: 311 TYRKKLKLAIPWLTQIDATLC 331

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383578|gb|EFR28617.1| hypothetical protein AND_03257 [Anopheles darlingi]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 204/259 (78%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +ERL LRWNLIKKIEN+  LT+L ELELYDNQ+T +ENLD L+NLE+LD+SFNR+REIK 
Sbjct: 70  LERLCLRWNLIKKIENLDHLTSLLELELYDNQITELENLDQLVNLEVLDVSFNRLREIKN 129

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +  L  L +L+LC+N+IS IEN+D    L +LELGDNK+R +ENLD LTNL  LY+GKNK
Sbjct: 130 ISALTKLRQLFLCANRISLIENLDSFSNLTMLELGDNKLRKLENLDHLTNLTHLYIGKNK 189

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I++I+NL  L KL  LSLQCNRL  +ENLE L NLT+LY+SENG+  +ENL  N+ LETL
Sbjct: 190 ITKIENLDKLVKLECLSLQCNRLTKLENLENLVNLTELYVSENGIEKLENLEQNKLLETL 249

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           DV  N+I  I+NI HL  L+EFW+NDN VS+W+ V+ L  NK+L T+YL+RNPVA D NY
Sbjct: 250 DVGKNRIQRIENIGHLQALEEFWMNDNAVSEWSCVDRLAENKKLATVYLERNPVASDVNY 309

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRK+KL  PW+ +IDATL 
Sbjct: 310 RRKLKLAVPWLQKIDATLC 328

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849085|ref|NP_001155729.1| protein phosphatases pp1 regulatory subunit-like [Acyrthosiphon pisum] gi|239792184|dbj|BAH72462.1| ACYPI007814 [Acyrthosiphon pisum]

 Score =  319 bits (818), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/259 (64%), Positives = 207/259 (79%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L LRWN IKKIENI ML +L EL+LYDNQ+T IENL +LINL++LDLSFNRI+EI+G
Sbjct: 70  LRSLCLRWNHIKKIENIQMLVSLNELDLYDNQITKIENLSSLINLKVLDLSFNRIKEIEG 129

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L+HL NLEKLYL SN+I+KI NV+HL  L++LELGDNKI+ IEN+D LT L ELY GKNK
Sbjct: 130 LEHLINLEKLYLSSNRITKITNVNHLLNLQMLELGDNKIKTIENIDCLTGLTELYFGKNK 189

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           +++I NL +L  L ILSLQ N L  IENL  LT+L +LYLSEN +T IENL  N  L TL
Sbjct: 190 VNKIQNLDTLINLKILSLQNNSLTKIENLNKLTSLDELYLSENRITVIENLEDNINLGTL 249

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D++ NKIS I+NI HL +L E WINDN+++DWN+V +LE+ K+L+TIYL+ NP+ +D  Y
Sbjct: 250 DLSMNKISKIENITHLQKLTELWINDNKINDWNSVQILEHMKKLETIYLEHNPLIKDSAY 309

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRKIKL+ PWI QIDATLA
Sbjct: 310 RRKIKLIMPWIAQIDATLA 328

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548260|ref|XP_001599951.1| PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Nasonia vitripennis]

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 205/259 (79%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           I++L   WNLIKKIEN+  L TL ELEL DNQ+TVIENLD L NL+ LDLSFNRI++I+ 
Sbjct: 59  IKKLCFTWNLIKKIENLDTLQTLVELELRDNQITVIENLDALKNLQSLDLSFNRIKKIEN 118

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           LD+L +L+KL++ SN+I+KIENV HLK L +LELGDNKIR IENLDGL NL  L+LGKNK
Sbjct: 119 LDNLVSLQKLFISSNRITKIENVAHLKNLTMLELGDNKIREIENLDGLDNLTSLFLGKNK 178

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS+I NL +L  L +L LQCNR+  IENL  L  L QLYLSENGLT IE L +  K+ TL
Sbjct: 179 ISKIRNLENLKNLTLLILQCNRIVCIENLTELVKLEQLYLSENGLTQIEGLENCTKISTL 238

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A NKI  I NI HLTEL+EFWIN+N++ DW+T+++L +NK+L TIYL+ NP+A+D NY
Sbjct: 239 DLAQNKIKKISNIQHLTELEEFWINNNEIEDWSTIDILTSNKKLATIYLEHNPIAKDANY 298

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRKIKL  PW+ Q+DATL 
Sbjct: 299 RRKIKLALPWLTQLDATLC 317

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049759|ref|XP_001858337.1| phosphatase 1 regulatory subunit 7 [Culex quinquefasciatus] gi|167871497|gb|EDS34880.1| phosphatase 1 regulatory subunit 7 [Culex quinquefasciatus]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 159/261 (60%), Positives = 204/261 (78%)

Query: 59  VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
           V +ERL +RWNLIKKIEN+  LT L+ELELYDNQ+T +ENL+ L+NLE+LD+SFNR+ +I
Sbjct: 60  VNLERLYMRWNLIKKIENLDHLTELQELELYDNQITELENLNCLVNLEMLDVSFNRLHKI 119

Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
           + L+ L  L KL+LC+NKIS IENV HL  L +LELGDNKIR I+NL+ LTNL  LYLGK
Sbjct: 120 QNLEELTKLRKLFLCANKISTIENVGHLSNLTMLELGDNKIRKIQNLESLTNLTHLYLGK 179

Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
           NKI++I+NL  L KL  LSLQ NR+  +ENL+ L NLT+LY+SENG+  IENL  N+ LE
Sbjct: 180 NKINKIENLDQLVKLECLSLQSNRIVKLENLDKLVNLTELYISENGIERIENLAENKALE 239

Query: 239 TLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
           TLD+A N++ +++N+ HL  L+E W+NDN VSDWN V VL  NK+L T+YL+RNP+A D 
Sbjct: 240 TLDLAKNRVKVLENLDHLACLEELWMNDNAVSDWNCVTVLAQNKKLATVYLERNPLAGDV 299

Query: 299 NYRRKIKLVCPWIVQIDATLA 319
            YR K+KL  PW+ +IDATL 
Sbjct: 300 TYRNKLKLAVPWLTKIDATLC 320

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213325|gb|EFN88777.1| Protein phosphatase 1 regulatory subunit 7 [Harpegnathos saltator]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/311 (57%), Positives = 220/311 (70%), Gaps = 11/311 (3%)

Query: 11  EVDNDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVC--IERLLLRW 68
           EVDN        E  E    +++ + +PD E E +   SK    E+ E    I RL   W
Sbjct: 16  EVDN--------EGEETEEADKILIIDPDSE-ELDFNHSKLTKLENLEPLTQIRRLCFTW 66

Query: 69  NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
           NLIKKIEN+  LTTL ELEL DNQ+  IENLD L+NLE+LDLSFNRI++I+GLD+L NL+
Sbjct: 67  NLIKKIENLDTLTTLVELELRDNQIMTIENLDVLVNLELLDLSFNRIKKIEGLDNLLNLQ 126

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
           KL+L SNKIS IEN+ HL  L  LELGDNKIR IENL+GL  L  LYLGKNKI++I NL 
Sbjct: 127 KLFLSSNKISHIENILHLVNLTTLELGDNKIREIENLEGLQKLINLYLGKNKITKIQNLE 186

Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
           SL  L +LSLQ NR+  IEN+E L  L QLYLSENG+T IE + +   L TLD+A NKI 
Sbjct: 187 SLQDLTLLSLQSNRIVKIENIEELRKLDQLYLSENGITCIEGIENCSGLTTLDLANNKIK 246

Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC 308
            IQNI HL  L+EFW+N+N++ DWNT+  L  NK L+TIYL+ NPVA++PNYRRKI L+ 
Sbjct: 247 KIQNIDHLESLEEFWMNNNEIEDWNTLENLTANKNLRTIYLEHNPVAKEPNYRRKIMLLL 306

Query: 309 PWIVQIDATLA 319
           PW+ Q+DATL 
Sbjct: 307 PWLEQLDATLC 317

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168558|gb|EFN61616.1| Protein phosphatase 1 regulatory subunit 7 [Camponotus floridanus]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/259 (63%), Positives = 199/259 (76%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           I RL   WNLIKKIEN+ MLTTL ELEL DNQ+  IENLD L+NLE+LDLSFNRI++I+G
Sbjct: 59  IRRLCFTWNLIKKIENLDMLTTLVELELRDNQIINIENLDALVNLELLDLSFNRIKKIEG 118

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L +L NL+KL+L SNKI  IENV HL  L  LELGDNKIR IENL+GL  L  LYLGKNK
Sbjct: 119 LSNLLNLQKLFLSSNKILHIENVSHLTNLTTLELGDNKIREIENLEGLQKLTNLYLGKNK 178

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I++I NL SL  L +LSLQ NR+  IEN+E L  L QLYLSENG+T IE + +   L TL
Sbjct: 179 ITKIQNLESLENLTLLSLQSNRITKIENIEELKKLDQLYLSENGITCIEGIENCSGLTTL 238

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           D+A NKI  IQN+ HL  L+EFW+N+N++ DWNT+  L  NK+LQT+YL+ NP+A+DPNY
Sbjct: 239 DLANNKIKKIQNMNHLENLEEFWMNNNEIEDWNTLENLRVNKKLQTVYLEHNPIAKDPNY 298

Query: 301 RRKIKLVCPWIVQIDATLA 319
           RRKI L+ PW+ Q+DATL 
Sbjct: 299 RRKIMLLLPWLEQLDATLC 317

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	319
FB|FBgn0028992	326	sds22 "sds22" [Drosophila mela	0.808	0.791	0.581	2.7e-75
MGI|MGI:1913635	361	Ppp1r7 "protein phosphatase 1,	0.805	0.711	0.556	4.5e-75
UNIPROTKB|Q15435	360	PPP1R7 "Protein phosphatase 1	0.805	0.713	0.564	7.3e-75
UNIPROTKB|Q3T0W4	360	PPP1R7 "Protein phosphatase 1	0.805	0.713	0.560	1.2e-74
RGD|1308169	360	Ppp1r7 "protein phosphatase 1,	0.805	0.713	0.552	4e-74
ZFIN|ZDB-GENE-051113-288	345	ppp1r7 "protein phosphatase 1,	0.789	0.730	0.547	1.2e-72
WB|WBGene00011637	326	T09A5.9 [Caenorhabditis elegan	0.805	0.788	0.5	1.3e-59
ASPGD|ASPL0000056701	355	AN10088 [Emericella nidulans (	0.805	0.723	0.471	5.9e-57
WB|WBGene00015516	349	C06A8.6 [Caenorhabditis elegan	0.805	0.736	0.447	1.2e-56
POMBASE|SPAC4A8.12c	332	sds22 "protein phosphatase reg	0.802	0.771	0.461	6.1e-55

FB|FBgn0028992 sds22 "sds22" [Drosophila melanogaster (taxid:7227)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 150/258 (58%), Positives = 195/258 (75%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             IERL LRWNLIKKIEN+  L TL ELELYDNQ+T IENLD L +LE+LD+SFNR+ +I+ 
Sbjct:    63 IERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIENLDDLPHLEVLDISFNRLTKIEN 122

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             LD L  LEK+Y  SN+I++IEN+D L  L +LELGDNK++ IEN++ L NL +L+LGKNK
Sbjct:   123 LDKLVKLEKVYFVSNRITQIENLDMLTNLTMLELGDNKLKKIENIEMLVNLRQLFLGKNK 182

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             I++I+NL +L  L ILSLQ NR+  IE LE L NL +LY+SENG+ TIENL  N KLETL
Sbjct:   183 IAKIENLDTLVNLEILSLQANRIVKIETLEKLANLRELYVSENGVETIENLSENTKLETL 242

Query:   241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
             D+A N++  I N+  L  L+E W+N N V DW  + +L+ NK LQTIYL+ NP+A+D  Y
Sbjct:   243 DLAKNRLKGIANLEKLELLEELWLNHNGVDDWKDIELLKVNKALQTIYLEYNPLAKDVRY 302

Query:   301 RRKIKLVCPWIVQIDATL 318
             R K++ + P + +IDATL
Sbjct:   303 RSKLRDILPQLQKIDATL 320

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=ISS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=IMP

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

MGI|MGI:1913635 Ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Mus musculus (taxid:10090)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 143/257 (55%), Positives = 197/257 (76%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LE+LD+SFN +R I+G
Sbjct:   101 VKSLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEG 160

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             +D L  L+KL+L +NKI+KIEN+ +L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct:   161 IDKLTQLKKLFLVNNKINKIENISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 220

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             I+++ NL +LT L +LS+Q NRL  IE L++L NL +LYLS NG+  IE L +N KL  L
Sbjct:   221 ITKLQNLDALTNLTVLSVQSNRLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTML 280

Query:   241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
             D+A N+I  I+NI+HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct:   281 DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 340

Query:   301 RRKIKLVCPWIVQIDAT 317
             RRK+ L  P + QIDAT
Sbjct:   341 RRKVMLALPSVRQIDAT 357

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q15435 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Homo sapiens (taxid:9606)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 145/257 (56%), Positives = 196/257 (76%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LEILD+SFN +R I+G
Sbjct:   100 VKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEG 159

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             +D L  L+KL+L +NKISKIEN+ +L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct:   160 VDKLTRLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             I+++ NL +LT L +LS+Q NRL  IE L+ L NL +LYLS NG+  IE L +N KL  L
Sbjct:   220 ITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTML 279

Query:   241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
             D+A N+I  I+NI+HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct:   280 DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 339

Query:   301 RRKIKLVCPWIVQIDAT 317
             RRK+ L  P + QIDAT
Sbjct:   340 RRKVMLALPSVRQIDAT 356

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

UNIPROTKB|Q3T0W4 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Bos taurus (taxid:9913)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 144/257 (56%), Positives = 196/257 (76%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENLD L  LE+LD+SFN +R I+G
Sbjct:   100 VKTLCLRQNLIKCIENLEGLQSLRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEG 159

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             +D L  L+KL+L +NKI+KIEN+  L +L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct:   160 IDKLTRLKKLFLVNNKINKIENISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             I+++ NL +LT L +LS+Q NRL  IE L++L NL +LYLS NG+  IE L +N KL  L
Sbjct:   220 ITKLQNLDALTNLTVLSMQSNRLTKIEGLQSLVNLRELYLSHNGIEVIEGLDNNNKLTML 279

Query:   241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
             D+A N+I  I+N++HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct:   280 DIASNRIKKIENVSHLTELQEFWMNDNLLDCWSDLDELKGARSLETVYLERNPLQRDPQY 339

Query:   301 RRKIKLVCPWIVQIDAT 317
             RRKI L  P + QIDAT
Sbjct:   340 RRKIMLALPSVRQIDAT 356

GO:0005634 "nucleus" evidence=IEA

RGD|1308169 Ppp1r7 "protein phosphatase 1, regulatory subunit 7" [Rattus norvegicus (taxid:10116)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 142/257 (55%), Positives = 196/257 (76%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             ++ L LR NLIK IEN+  L +L+EL+LYDNQ+  IENL+ L  LE+LD+SFN +R I+G
Sbjct:   100 VKSLCLRQNLIKCIENLDELQSLRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEG 159

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             +D L  L+KL+L +NKI+KIEN+  L++L++LELG N+IR IEN+D LTNLE L+LGKNK
Sbjct:   160 IDKLTQLKKLFLVNNKINKIENISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNK 219

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             I+++ NL +L+ L +LS+Q NRL  IE L+ L NL +LYLS NG+  IE L +N KL  L
Sbjct:   220 ITKLQNLDALSNLTVLSMQSNRLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTML 279

Query:   241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
             D+A N+I  I+NI+HLTELQEFW+NDN +  W+ ++ L+  + L+T+YL+RNP+ +DP Y
Sbjct:   280 DIASNRIKKIENISHLTELQEFWMNDNLLESWSDLDELKGARSLETVYLERNPLQKDPQY 339

Query:   301 RRKIKLVCPWIVQIDAT 317
             RRK+ L  P + QIDAT
Sbjct:   340 RRKVMLALPSVRQIDAT 356

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-051113-288 ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Danio rerio (taxid:7955)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 138/252 (54%), Positives = 192/252 (76%)

Query:    66 LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA 125
             LR NLIK+IEN+  L +L+EL+LYDNQ+  +ENL  L  LE LD+SFN +R+I+GLD L 
Sbjct:    90 LRQNLIKRIENLESLVSLRELDLYDNQIRKLENLQALTELEQLDVSFNLLRKIEGLDSLT 149

Query:   126 NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRID 185
              ++KL+L  NKI+ I N+DHL  L++LELG N+IR+IENLD L++LE L+LG NKI+++ 
Sbjct:   150 KVKKLFLLHNKIASIANLDHLTSLQMLELGSNRIRVIENLDSLSSLESLFLGTNKITQLQ 209

Query:   186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
             NL  L  L +LS+Q NR+  +E L+ L NL +LYLS NG+  +E L +N+KL TLD+A N
Sbjct:   210 NLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSHNGIEVMEGLENNKKLSTLDIAAN 269

Query:   246 KISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIK 305
             +I  I+NI+HLT+L+EFW+NDNQ+ +W  ++ L+N K L+T+YL+RNP+ +DP YRRKI 
Sbjct:   270 RIKKIENISHLTDLKEFWMNDNQIENWADLDELKNAKGLETVYLERNPLQKDPQYRRKIM 329

Query:   306 LVCPWIVQIDAT 317
             L  P + QIDAT
Sbjct:   330 LALPSVRQIDAT 341

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00011637 T09A5.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 130/260 (50%), Positives = 174/260 (66%)

Query:    61 IERLLLRWNLIKKIE-NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
             IE L +R NL+  I   I  L TL  L+LY+NQLT I +L++L+NL  LDLS+NRIR+I 
Sbjct:    60 IEELRMRNNLLVSISPTISSLVTLTSLDLYENQLTEISHLESLVNLVSLDLSYNRIRQIN 119

Query:   120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
             GLD L  LE LYL SNKI KIEN++ L +LK+LELGDN+I+ IEN+  L NL+EL++GKN
Sbjct:   120 GLDKLTKLETLYLVSNKIEKIENLEALTQLKLLELGDNRIKKIENIGHLVNLDELFIGKN 179

Query:   180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
             KI +++ + +L KL++LSL  NR+  IEN+E L NL +LYLS+ GL  I  +     L  
Sbjct:   180 KIRQLEGVETLQKLSVLSLPGNRIVKIENVEQLNNLKELYLSDQGLQDIHGVEPLTNLLL 239

Query:   240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA-QDP 298
             LDVA N+I     +  L  L +FW NDN+V  ++ +  L   K LQT+YL+RNP    D 
Sbjct:   240 LDVANNEIKTFSGVERLESLNDFWANDNKVESFSEIEQLSKLKGLQTVYLERNPFYFNDT 299

Query:   299 N-YRRKIKLVCPWIVQIDAT 317
             N YRRK+ +    + QIDAT
Sbjct:   300 NQYRRKVMMTLTQVTQIDAT 319

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

ASPGD|ASPL0000056701 AN10088 [Emericella nidulans (taxid:162425)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 123/261 (47%), Positives = 181/261 (69%)

Query:    61 IERLLLRWNLIKKIENIHML-TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
             ++RL LR N I +IE    L  TL+EL+LYDN ++ ++ LD   NL  LDLSFN+++ IK
Sbjct:    79 LQRLCLRQNQISRIELPSSLGETLQELDLYDNLISHLKGLDDFHNLTSLDLSFNKLKHIK 138

Query:   120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
              + HL  L+ LY   NKISKIE ++ L ++K LELG NKIR IENL+ L+ LEEL+LGKN
Sbjct:   139 NISHLVKLKDLYFVQNKISKIEGLEGLTEIKNLELGANKIREIENLETLSALEELWLGKN 198

Query:   180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
             KI+ + NL +LT L ILS+Q NRL +++ L +L NL +LY+S N +T +  L SN  L  
Sbjct:   199 KITEMKNLDALTNLRILSIQSNRLTSLKGLSSLKNLEELYVSHNAITDLAGLESNNALRV 258

Query:   240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN-VLENNKQLQTIYLDRNPVAQD- 297
             LD + N++S +++++HL EL+E W ++NQ+S +N V   L++ + L+T+Y + NP+  + 
Sbjct:   259 LDFSNNQVSKLEHLSHLKELEELWASNNQLSSFNEVERELKDKENLKTVYFEGNPLQTNG 318

Query:   298 PN-YRRKIKLVCPWIVQIDAT 317
             P  YR K++L  P I+QIDA+
Sbjct:   319 PVVYRNKVRLAIPQIMQIDAS 339

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

WB|WBGene00015516 C06A8.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 115/257 (44%), Positives = 167/257 (64%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             +E    RWNLIKKIEN+  LTTL  LE YDNQ+T +ENLD+L+NLE LDLSFNRI +I+ 
Sbjct:    56 VEHFSFRWNLIKKIENLDCLTTLTHLEFYDNQITKVENLDSLVNLESLDLSFNRITKIEN 115

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             L+ L  L+ L+   NKI+KIE +D L +L+ LELGDN+I  IENLD    L+ L+LG N+
Sbjct:   116 LEKLTKLKTLFFVHNKITKIEGLDTLTELEYLELGDNRIAKIENLDNNLKLDRLFLGANQ 175

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             I  I+N+  L KL +LSL  N +  ++N+  L NL ++YL++NG+  +  +  +  LE L
Sbjct:   176 IRLIENVDHLKKLTVLSLPANAITVVDNISGLHNLKEIYLAQNGIKYVCGIDEHLPLEIL 235

Query:   241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
             D   N++  ++NI  L  L +FW   N++ +W+ ++ L    QL ++YLD NP+A    Y
Sbjct:   236 DFNQNRLEKVENIHQLKTLTDFWARGNKLDNWSIMDELVELPQLNSVYLDFNPIASVDTY 295

Query:   301 RRKIKLVCPWIVQIDAT 317
             R K+  +   I ++D T
Sbjct:   296 RGKVIHLLQQITRLDGT 312

GO:0005576 "extracellular region" evidence=IEA

POMBASE|SPAC4A8.12c sds22 "protein phosphatase regulatory subunit Sds22" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 121/262 (46%), Positives = 176/262 (67%)

Query:    61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             ++ L LR N IKKIE++    TL EL+LYDN +  IENLD + NL  LDLSFN I+ I+ 
Sbjct:    64 LQSLCLRQNQIKKIESVP--ETLTELDLYDNLIVRIENLDNVKNLTYLDLSFNNIKTIRN 121

Query:   121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
             ++HL  LE L+   N+I +IEN++ L +L  LELG NKIR+IENLD L NLE+L++GKNK
Sbjct:   122 INHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVGKNK 181

Query:   181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTN-LTQLYLSENGLTTIENLLSNEKLET 239
             I++ +N   L KL++LS+Q NR+   ENL  L++ L +LY+S NGLT+   +   E LE 
Sbjct:   182 ITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEI 241

Query:   240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV-NVLENNKQLQTIYLDRNPVAQ-D 297
             LDV+ N I  +  +A L  L E W ++N++S +  + + L   K+L+T+Y + NP+ + +
Sbjct:   242 LDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTN 301

Query:   298 PN-YRRKIKLVCPWIVQIDATL 318
             P  YR K++L  P + QIDAT+
Sbjct:   302 PAVYRNKVRLCLPQLRQIDATI 323

GO:0000070 "mitotic sister chromatid segregation" evidence=ISO

GO:0000164 "protein phosphatase type 1 complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0009966 "regulation of signal transduction" evidence=IC

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0051457 "maintenance of protein location in nucleus" evidence=ISO

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P22194	SDS22_SCHPO	No assigned EC number	0.4618	0.8025	0.7710	yes	N/A
Q6DIQ3	PP1R7_XENTR	No assigned EC number	0.5559	0.8119	0.7485	yes	N/A
Q3UM45	PP1R7_MOUSE	No assigned EC number	0.5564	0.8056	0.7119	yes	N/A
Q15435	PP1R7_HUMAN	No assigned EC number	0.5598	0.8119	0.7194	yes	N/A
Q5RFS7	PP1R7_PONAB	No assigned EC number	0.5521	0.8119	0.7194	yes	N/A
P45969	YNZ9_CAEEL	No assigned EC number	0.4651	0.9247	0.9049	yes	N/A
Q5HZV9	PP1R7_RAT	No assigned EC number	0.5482	0.8119	0.7194	yes	N/A
P36047	SDS22_YEAST	No assigned EC number	0.4701	0.8025	0.7573	yes	N/A
Q3T0W4	PP1R7_BOVIN	No assigned EC number	0.5559	0.8119	0.7194	yes	N/A
Q32PL1	PP1R7_DANRE	No assigned EC number	0.5454	0.7931	0.7333	yes	N/A
Q54Q39	PP1R7_DICDI	No assigned EC number	0.4486	0.8087	0.7678	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	319
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 75/224 (33%), Positives = 109/224 (48%), Gaps = 8/224 (3%)

Query: 72  KKIENIHMLTTLKELELYDNQLTV-IENLDTLINLEILDLSFNRIREIKGLDHL--ANLE 128
              EN+  L  L  L+L  N+L   I  L  L NL  LDL  N I +I  L  L  +NL+
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 129 KLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIENLDG-LTNLEELYLGKNKISRIDN 186
           +L L  NKI  +   + +L  LK L+L  N +  +  L   L+NL  L L  NKIS +  
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP 203

Query: 187 LAS-LTKLNILSLQCNR-LRTIENLEALTNLTQLYLSENGLTTIENLLSNEK-LETLDVA 243
               L+ L  L L  N  +  + +L  L NL+ L LS N L  +   + N   LETLD++
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263

Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI 287
            N+IS I ++  LT L+E  ++ N +S+   +  L        +
Sbjct: 264 NNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 6/220 (2%)

Query: 80  LTTLKELELYDNQLTVIENLDT-LINLEILDLSFNRIREIKGL-DHLANLEKLYLCSNKI 137
           L  LK L+L  N L+ +  L + L NL  LDLS N+I ++    + L+ LE+L L +N I
Sbjct: 162 LPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI 221

Query: 138 SK-IENVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNI 195
            + + ++ +LK L  LEL +NK+  + E++  L+NLE L L  N+IS I +L SLT L  
Sbjct: 222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRE 281

Query: 196 LSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV--AYNKISIIQNI 253
           L L  N L     L AL  L    L    LT     L    +   +   +  + S  + +
Sbjct: 282 LDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           + L  L   W  DN + + N    +  N       LD   
Sbjct: 342 SILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVK 381

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 11/224 (4%)

Query: 93  LTVIENLDTLINLEILDLSFNRIRE-IKGLDHLANLEKLYLCSNKISKIENVDHL--KKL 149
           L   ENL  L+ L  LDL+ NR+R  I  L  L NL  L L +N I+ I  +  L    L
Sbjct: 83  LDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 150 KVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNLAS-LTKLNILSLQCNRLRTIE 207
           K L+L DNKI  +   L  L NL+ L L  N +S +  L S L+ LN L L  N++  + 
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 208 NL-EALTNLTQLYLSENGLTTIENLLSNEK-LETLDVAYNKI-SIIQNIAHLTELQEFWI 264
              E L+ L +L LS N +  + + LSN K L  L+++ NK+  + ++I +L+ L+   +
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262

Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC 308
           ++NQ+S  +++  L N   L+ + L  N ++        + L+ 
Sbjct: 263 SNNQISSISSLGSLTN---LRELDLSGNSLSNALPLIALLLLLL 303

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 10/135 (7%)

Query: 102 LINLEILDLSFNRIR-EI-KGLDHLANLEKLYLCSNKIS-KIEN-VDHLKKLKVLELGDN 157
           L +L  LDL +N +   I   L +L NL+ L+L  NK+S  I   +  L+KL  L+L DN
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 158 KI--RIIENLDGLTNLEELYLGKNKIS-RI-DNLASLTKLNILSLQCNRL--RTIENLEA 211
            +   I E +  L NLE L+L  N  + +I   L SL +L +L L  N+      +NL  
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 212 LTNLTQLYLSENGLT 226
             NLT L LS N LT
Sbjct: 355 HNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 126 NLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKI 181
           NL+ L L +N+++ I +     L  LKVL+L  N +  I      GL +L  L L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 147 KKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLAS 189
             L+ L+L +N+I  +  L  L NLE L L  NKI+ +  L++
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 104 NLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH 145
           NLE LDLS N+I ++  L +L NLE L L  NKI+ +  + +
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLE 210
           TNLE L L  N+I+ +  L++L  L  L L  N++  +  L 
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
           T L+ L+L +NQ+T +  L  L NLE LDLS N+I ++  L +
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 104 NLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKI 159
           NL+ LDLS NR+  I       L NL+ L L  N ++ I       L  L+ L+L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 148 KLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203
            LK L+L +N++ +I +    GL NL+ L L  N ++ I     + L  L  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAH 255
           TNL  L LS N +T +  L +   LETLD++ NKI+ +  +++
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 126 NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
           NLE L L +N+I+ +  + +L  L+ L+L  NKI  +  L
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 39/230 (16%)

Query: 80  LTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRI--REIKGLDHLANLEKLYLCSN 135
           L  L+ L+L+ N+ +  + +NL    NL +LDLS N +     +GL    NL KL L SN
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 136 KI-SKI-ENVDHLKKLKVLELGDN-----------KIRIIENLD---------------G 167
            +  +I +++   + L+ + L DN           K+ ++  LD                
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 168 LTNLEELYLGKNKIS-RIDNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENG 224
           + +L+ L L +NK    + +     +L  L L  N+        L +L+ L QL LSEN 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 225 LTTI--ENLLSNEKLETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVS 270
           L+    + L S +KL +LD+++N++S  I  + + +  L +  ++ NQ+S
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 170 NLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGL 225
           NL+ L L  N+++ I +     L  L +L L  N L +I       L +L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL 231
           T L  L L  N++  +  L  L NL  L LS N +T +  L
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 83  LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKI 137
           LK L+L +N+LTVI +     L NL++LDLS N +  I  +    L +L  L L  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 35/190 (18%)

Query: 141 ENVDHLKKLKVLELGDNKIRII--------ENLDGLTNLEELYLGKNKIS-----RIDNL 187
             +     LK L L  N+   I        + L     L+EL L  N +       +++L
Sbjct: 45  SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104

Query: 188 ASLTKLNILSLQCNRL-RTIENL--EALT----NLTQLYLSENGLT------TIENLLSN 234
              + L  L L  N L      L  + L      L +L L  N L         + L +N
Sbjct: 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164

Query: 235 EKLETLDVAYNKI------SIIQNIAHLTELQEFWINDNQVSDWNTV---NVLENNKQLQ 285
             L+ L++A N I      ++ + +     L+   +N+N ++D         L + K L+
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224

Query: 286 TIYLDRNPVA 295
            + L  N + 
Sbjct: 225 VLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 22/208 (10%)

Query: 60  CIERLLLRWNLIK-KIEN-IHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRI 115
            +E L L  N++  +I N I   ++LK L+L  N L   +  +L  L +LE L L+ N++
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 116 -----REIKGLDHLANLEKLYLCSNKIS-KIEN-VDHLKKLKVLELGDNKI--RIIENLD 166
                RE   L  + +L+ +YL  N +S +I   +  L  L  L+L  N +   I  +L 
Sbjct: 201 VGQIPRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 167 GLTNLEELYLGKNKIS-RIDN-LASLTKLNILSLQCNRL--RTIENLEALTNLTQLYLSE 222
            L NL+ L+L +NK+S  I   + SL KL  L L  N L     E +  L NL  L+L  
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 223 NGLT-TI-ENLLSNEKLETLDVAYNKIS 248
           N  T  I   L S  +L+ L +  NK S
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Length = 968

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	319
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-26
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-26
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-26
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-08
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-25
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-25
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-25
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-25
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-06
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		1e-19
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		3e-04
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		2e-16
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		3e-13
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		9e-16
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		7e-09
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-15
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		3e-14
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		6e-04
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		1e-13
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		4e-13
2y5q_A	362	Listeria Monocytogenes Inlb (Internalin B) Residues		1e-07
1h6t_A	291	Internalin B: Crystal Structure Of Fused N-Terminal		2e-13
1h6t_A	291	Internalin B: Crystal Structure Of Fused N-Terminal		5e-13
1h6t_A	291	Internalin B: Crystal Structure Of Fused N-Terminal		2e-07
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		2e-13
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		6e-13
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		9e-07
2uzx_A	289	Structure Of The Human Receptor Tyrosine Kinase Met		2e-13
2uzx_A	289	Structure Of The Human Receptor Tyrosine Kinase Met		5e-13
2uzx_A	289	Structure Of The Human Receptor Tyrosine Kinase Met		1e-07
2wqx_A	289	Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutan		2e-13
2wqx_A	289	Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutan		3e-06
1otn_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		3e-13
1otn_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-13
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		3e-13
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-13
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-07
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		3e-13
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-13
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-07
1d0b_A	213	Internalin B Leucine Rich Repeat Domain Length = 21		3e-13
1d0b_A	213	Internalin B Leucine Rich Repeat Domain Length = 21		6e-13
1d0b_A	213	Internalin B Leucine Rich Repeat Domain Length = 21		7e-07
2wqw_A	286	Double-Disulfide Cross-Linked Crystal Dimer Of The		7e-13
2wqw_A	286	Double-Disulfide Cross-Linked Crystal Dimer Of The		1e-07
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		5e-10
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		2e-07
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		4e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-09
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-09
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-09
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		8e-09
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		4e-07
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-07
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-05
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		5e-07
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-07
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-06
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		3e-04
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		6e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		9e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		9e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-05
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		1e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		4e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		6e-04

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L    NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  + ++N+VSD +++  L N
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 350

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
           ++D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N
Sbjct: 39  DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 95
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
           ++  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+
Sbjct: 96  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 262 FWINDNQVSD 271
              + NQV+D
Sbjct: 156 LSFSSNQVTD 165

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L    NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  +  +N+VSD +++  L N
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 350

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
           ++D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N
Sbjct: 39  DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 95
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
           ++  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+
Sbjct: 96  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 155
Query: 262 FWINDNQVSD 271
              + NQV+D
Sbjct: 156 LSFSSNQVTD 165

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 123/220 (55%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L    NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 190
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 251 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  +  +N+VSD +++  L N
Sbjct: 311 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 350

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
           +D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N+
Sbjct: 40  LDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
           +  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+ 
Sbjct: 97  IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Query: 263 WINDNQVSD 271
             + NQV+D
Sbjct: 157 NFSSNQVTD 165

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L  + NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 189
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  + ++N+VSD +++  L N
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTN 349

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
           +D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N+
Sbjct: 40  LDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
           +  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+ 
Sbjct: 97  IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Query: 263 WINDNQVSD 271
               NQV+D
Sbjct: 157 NFG-NQVTD 164

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L  + NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 135 LNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 193
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 253
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 254 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 313
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  +  +N+VSD +++  L N
Sbjct: 314 TLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTN 353

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
           ++D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N
Sbjct: 43  DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 99
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
           ++  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+
Sbjct: 100 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 159
Query: 262 FWINDNQVSD 271
                NQV+D
Sbjct: 160 LSFG-NQVTD 168

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L  + NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLS-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 194
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 314
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  +  +N+VSD +++  L N
Sbjct: 315 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 354

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN 201
           ++D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N
Sbjct: 44  DLDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100
Query: 202 RLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
           ++  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+
Sbjct: 101 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 160
Query: 262 FWINDNQVSD 271
                NQV+D
Sbjct: 161 LSFG-NQVTD 169

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 1/220 (0%)
Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           + RL L  N I  I  +  LT+L++L  + NQ+T ++ L  L  LE LD+S N++ +I  
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLN-FGNQVTDLKPLANLTTLERLDISSNKVSDISV 189
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NLE L   +N+IS I  +  L  L  L L  N+++ I  L  LTNL +L L  N+
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS +  L+ LTKL  L L  N++  I  L  LT LT L L+EN L  I  + + + L  L
Sbjct: 250 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 309
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            + +N IS I  ++ LT+LQ  +  +N+VSD +++  L N
Sbjct: 310 TLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 349

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
           +D +  L+   LG   I+ I+ ++ L NL ++    N+++ I  L +LTKL  + +  N+
Sbjct: 40  LDQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 96
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
           +  I  L  LTNLT L L  N +T I+ L +   L  L+++ N IS I  ++ LT LQ+ 
Sbjct: 97  IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 156
Query: 263 WINDNQVSD 271
               NQV+D
Sbjct: 157 NFG-NQVTD 164

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 26/256 (10%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
            I +L++    +  I+ I  LT L+ L L  NQ+T I  L  L+ L  L +  N+I +I 
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN---------------------- 157
            L +L NL +LYL  + IS I  + +L K   L LG N                      
Sbjct: 105 ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTE 164
Query: 158 -KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLT 216
            K++ +  +  LT+L  L L  N+I  I  LASLT L+  +   N++  I  +   T L 
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLN 224
Query: 217 QLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN 276
            L +  N +T +  L +  +L  L++  N+IS I  +  LT+L+   +  NQ+SD   ++
Sbjct: 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISD---IS 281
Query: 277 VLENNKQLQTIYLDRN 292
           VL N  QL +++L+ N
Sbjct: 282 VLNNLSQLNSLFLNNN 297

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 187 LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNK 246
           L S+TKL +      ++ +I+ +E LTNL  L L+ N +T I  L +  KL  L +  NK
Sbjct: 43  LESITKLVV---AGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK 99
Query: 247 ISIIQNIAHLTELQEFWINDNQVSD 271
           I+ I  + +LT L+E ++N++ +SD
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISD 124

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 106/183 (57%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
            I++++   + IK ++ I  L  L  L L +NQ+T I  +  L N+  L L+ N++ +IK
Sbjct: 45  SIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIK 104
Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
            L +L NL  L+L  NK+  + ++  LKKLK L L  N I  I  L  L  LE LYLG N
Sbjct: 105 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 164
Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
           KI+ I  L+ LTKL+ LSL+ N++  I  L  LT L  LYLS+N ++ +  L   + L+ 
Sbjct: 165 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDV 224
Query: 240 LDV 242
           L++
Sbjct: 225 LEL 227

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 93/166 (56%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
           I+ ++G+ +L NL  L L +N+I+ I  + +L  +  L L  NK+  I+ L  L NL  L
Sbjct: 56  IKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWL 115
Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
           +L +NK+  + +L  L KL  LSL+ N +  I  L  L  L  LYL  N +T I  L   
Sbjct: 116 FLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL 175
Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN 280
            KL+TL +  N+IS I  +A LT+LQ  +++ N +SD   +  L+N
Sbjct: 176 TKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN 221

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
           +  IE I  L  L  LEL DNQ+T +  L  L  +  L+LS N ++ +  +  L +++ L
Sbjct: 59  VTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 118
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
            L S +I+ +  +  L  L+VL L  N+I  I  L GLTNL+ L +G N+++ +  LA+L
Sbjct: 119 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPLANL 178
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL--LSNEKLETL 240
           +KL  L    N++  I  L +L NL +++L +N ++ +  L  LSN  + TL
Sbjct: 179 SKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSPLANLSNLFIVTL 230

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           LD +A L      +  ++ IE + +L  L  LEL DN+I  +  L  LT + EL L  N 
Sbjct: 46  LDGIATLSAF---NTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNP 102
Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           +  +  +A L  +  L L   ++  +  L  L+NL  LYL                    
Sbjct: 103 LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD------------------- 143
Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN------PV 294
               N+I+ I  +A LT LQ   I +NQV+D      L N  +L T+  D N      P+
Sbjct: 144 ---LNQITNISPLAGLTNLQYLSIGNNQVNDLTP---LANLSKLTTLRADDNKISDISPL 197
Query: 295 AQDPN 299
           A  PN
Sbjct: 198 ASLPN 202

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 91/167 (54%)
Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
           +  IE +  L  L  LEL DNQ+T +  L  L  +  L+LS N ++ +  +  L +++ L
Sbjct: 53  VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
            L S +I+ +  +  L  L+VL L  N+I  I  L GLTNL+ L +G  ++S +  LA+L
Sbjct: 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL 172
Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL 237
           +KL  L    N++  I  L +L NL +++L  N ++ +  L +   L
Sbjct: 173 SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNL 219

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 83  LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
           +  L  +   +T IE +  L NL  L+L  N+I ++  L +L  + +L L  N +  +  
Sbjct: 43  ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102
Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
           +  L+ +K L+L   +I  +  L GL+NL+ LYL  N+I+ I  LA LT L  LS+   +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162
Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
              + +L  L NL+                   KL TL    NKIS I  +A L  L E 
Sbjct: 163 ---VSDLTPLANLS-------------------KLTTLKADDNKISDISPLASLPNLIEV 200
Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
            + +NQ+SD   V+ L N   L  + L    +   P +
Sbjct: 201 HLKNNQISD---VSPLANTSNLFIVTLTNQTITNQPVF 235

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
            I +I     L N  ++  GK+ ++     A L  +  LS     + TIE ++ L NL  
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIG 67
Query: 218 LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNV 277
           L L +N +T +  L +  K+  L+++ N +  +  IA L  ++   +   Q++D   +  
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 278 LENNKQLQTIYLDRN 292
           L N   LQ +YLD N
Sbjct: 128 LSN---LQVLYLDLN 139

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR----- 114
            I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+     
Sbjct: 47  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106
Query: 115 -----------------IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
                            I +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           +I  I  L GLT L+ LYL KN IS +  LA L  L++L L
Sbjct: 167 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NK++              
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 Length = 362

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  LA+L  L  L L  N+++ + +L+ L  L  L
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 174
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 175 AGLTKLQNLYLSKNHIS 191

>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal Domains Length = 291

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR----- 114
            I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+     
Sbjct: 47  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106
Query: 115 -----------------IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
                            I +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           +I  I  L GLT L+ LYL KN IS +  LA L  L++L L
Sbjct: 167 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal Domains Length = 291

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NK++              
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal Domains Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  LA+L  L  L L  N+++ + +L+ L  L  L
Sbjct: 58  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 174
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 175 AGLTKLQNLYLSKNHIS 191

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 22/150 (14%)
Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI--------------- 115
           IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+I               
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 116 -------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGL 168
                   +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN+I  I  L GL
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 174
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSL 198
           T L+ LYL KN IS +  LA L  L++L L
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 204

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NKI+              
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 174
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 175 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 204

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  L +L  L  L L  N+++ + +L+ L  L  L
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 171
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 172 AGLTKLQNLYLSKNHIS 188

>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 289

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR----- 114
            I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+     
Sbjct: 45  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 104
Query: 115 -----------------IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
                            I +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN
Sbjct: 105 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 164
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           +I  I  L GLT L+ LYL KN IS +  LA L  L++L L
Sbjct: 165 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 205

>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 289

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NK++              
Sbjct: 56  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 175
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 176 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 205

>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In Complex With The Listeria Monocytogenes Invasion Protein Inlb: Crystal Form I Length = 289

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  LA+L  L  L L  N+++ + +L+ L  L  L
Sbjct: 56  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 172
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 173 AGLTKLQNLYLSKNHIS 189

>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of The Listeria Monocytogenes Inlb Internalin Domain Length = 289

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NK++              
Sbjct: 56  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++R I  L  L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARL 175
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 176 TKLQNLYLSKNHISDLRALRGLKNLDVLEL 205

>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of The Listeria Monocytogenes Inlb Internalin Domain Length = 289

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 22/144 (15%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLR-------------- 204
           I+ ++ +  L N+ +L+L  NK++ I  LA+L  L  L L  N+++              
Sbjct: 56  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 115
Query: 205 -----TIENLEALTNLTQ---LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHL 256
                 I ++  L +L Q   LYL  N +T I  L    KL+TL +  N+I  I  +A L
Sbjct: 116 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVPLARL 175
Query: 257 TELQEFWINDNQVSDWNTVNVLEN 280
           T+LQ  +++ N +SD   +  L+N
Sbjct: 176 TKLQNLYLSKNHISDLRALRGLKN 199

>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI---- 115
            I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+I    
Sbjct: 65  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 116 ------------------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
                              +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN
Sbjct: 125 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 184
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           +I  I  L GLT L+ LYL KN IS +  LA L  L++L L
Sbjct: 185 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NKI+              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI---- 115
            I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+I    
Sbjct: 65  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 124
Query: 116 ------------------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
                              +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN
Sbjct: 125 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 184
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           +I  I  L GLT L+ LYL KN IS +  LA L  L++L L
Sbjct: 185 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NKI+              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  L +L  L  L L  N+++ + +L+ L  L  L
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 192
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 193 AGLTKLQNLYLSKNHIS 209

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 22/150 (14%)
Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI--------------- 115
           IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+I               
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 116 -------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGL 168
                   +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN+I  I  L GL
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSL 198
           T L+ LYL KN IS +  LA L  L++L L
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NKI+              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 195
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 196 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 225

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  L +L  L  L L  N+++ + +L+ L  L  L
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 135
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 136 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 192
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 193 AGLTKLQNLYLSKNHIS 209

>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain Length = 213

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 22/161 (13%)
Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRI---- 115
            I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+I    
Sbjct: 42  SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 101
Query: 116 ------------------REIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDN 157
                              +I GL HL  LE LYL +NKI+ I  +  L KL  L L DN
Sbjct: 102 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 161
Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
           +I  I  L GLT L+ LYL KN IS +  LA L  L++L L
Sbjct: 162 QISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 202

>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain Length = 213

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NKI+              
Sbjct: 53  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 112
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 172
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 173 TKLQNLYLSKNHISDLRALAGLKNLDVLEL 202

>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain Length = 213

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  L +L  L  L L  N+++ + +L+ L  L  L
Sbjct: 53  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 112
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD---IVPL 169
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 170 AGLTKLQNLYLSKNHIS 186

>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The Listeria Monocytogenes Inlb Internalin Domain Length = 286

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI------------- 161
           I+ ++G+ +L N+ KL+L  NK++ I+ + +LK L  L L +NK++              
Sbjct: 53  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 112
Query: 162 ------IENLDGLTNL---EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEAL 212
                 I +++GL +L   E LYLG NKI+ I  L+ LTKL+ LSL+ N++  I  L  L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACL 172
Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           T L  LYLS+N ++ +  L   + L+ L++
Sbjct: 173 TKLQNLYLSKNHISDLRALCGLKNLDVLEL 202

>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The Listeria Monocytogenes Inlb Internalin Domain Length = 286

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           I+ ++ +  L N+ +L+L  NK++ I  LA+L  L  L L  N+++ + +L+ L  L  L
Sbjct: 53  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 112
Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVL 278
            L  NG++ I  L+   +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD   +  L
Sbjct: 113 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLACL 172
Query: 279 ENNKQLQTIYLDRNPVA 295
               +LQ +YL +N ++
Sbjct: 173 ---TKLQNLYLSKNHIS 186

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
           I+ +  +   T LKEL L  NQ++ +  L  L  LE L ++ NR++ + G+   A L +L
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL 111
Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
           +L +N++   +++ HLK L++L + +NK++ I  L  L+ LE L L  N+I+    L  L
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRL 171
Query: 191 TKLNILSLQCNR 202
            K+N + L   +
Sbjct: 172 KKVNWIDLTGQK 183

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTN--LE 172
           I+ + G+    NL++L+L  N+IS +  +  L KL+ L +  N+++   NL+G+ +  L 
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK---NLNGIPSACLS 109
Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLL 232
            L+L  N++   D+L  L  L ILS++ N+L++I  L  L+ L  L L  N +T    L 
Sbjct: 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169
Query: 233 SNEKLETLDVAYNK 246
             +K+  +D+   K
Sbjct: 170 RLKKVNWIDLTGQK 183

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 155 GDNK-IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALT 213
           GDN  I+ +  +   TNL+EL+L  N+IS +  L  LTKL  LS+  NRL+ +  + +  
Sbjct: 48  GDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC 107
Query: 214 NLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
            L++L+L  N L   ++L+  + LE L +  NK+  I  +  L++L+   ++ N++++
Sbjct: 108 -LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN 164

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 10/163 (6%)
Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLE 172
           I+ ++G+ +L N+  L L  NK+  I  +  L  L  L L  N+++ + N   D LTNL+
Sbjct: 53  IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112
Query: 173 ELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
           EL L +N++  + +     LT L  L+L  N+L+++     + LTNLT+L LS N L ++
Sbjct: 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 229 ENLLSNE--KLETLDVAYNKISIIQN--IAHLTELQEFWINDN 267
              + ++  +L+ L +  N++  + +     LT LQ  W++DN
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 31/198 (15%)
Query: 61  IERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
           +E L L  NL++KIE    + L +L  LEL+DN+LT +                      
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-------------------- 100
Query: 119 KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGD-NKIRIIEN--LDGLTNLEE 173
           +  ++L+ L +L+L +N I  I +   + +  L+ L+LG+  ++  I     +GL NL  
Sbjct: 101 QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 174 LYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE-N 230
           L LG   +  I NL +L +L  L L  NRL  I   + + LT+L +L+L    + TIE N
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 231 LLSNEK-LETLDVAYNKI 247
              + K LE L++++N +
Sbjct: 221 AFDDLKSLEELNLSHNNL 238

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 31/198 (15%)
Query: 61  IERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
           +E L L  NL++KIE    + L +L  LEL+DN+LT +                      
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPT-------------------- 100
Query: 119 KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGD-NKIRIIEN--LDGLTNLEE 173
           +  ++L+ L +L+L +N I  I +   + +  L+ L+LG+  ++  I     +GL NL  
Sbjct: 101 QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 174 LYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE-N 230
           L LG   +  I NL +L +L  L L  NRL  I   + + LT+L +L+L    + TIE N
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 231 LLSNEK-LETLDVAYNKI 247
              + K LE L++++N +
Sbjct: 221 AFDDLKSLEELNLSHNNL 238

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 37/209 (17%)
Query: 81  TTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIR--EIKGLDHLANLEKLYLCSNK 136
           T  + L L++NQ+ +I+  +   L +LEIL LS N IR  EI   + LANL  L L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 137 ISKIENVD--HLKKLKVLELGDNKIRIIEN---------------------------LDG 167
           ++ I N    +L KLK L L +N I  I +                            +G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGL 225
           L+NL  L L    +  I NL  L KL+ L L  N L  I   + + L +L +L++ ++ +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 226 TTIE-NLLSN-EKLETLDVAYNKISIIQN 252
             IE N   N + L  +++A+N ++++ +
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPH 272

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 9/159 (5%)
Query: 145 HLKKLKVLELGDNKIRIIENLDGLTNLE----ELYLGKNKISRID-NLASLTKLNILSLQ 199
           H+ K   ++   + IRI E    +   E    EL+     I ++D  L++L     L+L 
Sbjct: 1   HMAKATTIK---DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALS 57
Query: 200 CNRLRTIENLEALTNLTQLYLSENGLTTIENLLS-NEKLETLDVAYNKISIIQNIAHLTE 258
            N +  I +L  + NL  L L  N +  IENL +  + LE L ++YN+I+ +  I  L  
Sbjct: 58  TNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVN 117
Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD 297
           L+  ++++N++++W  ++ L    +L+ + L  NP+  D
Sbjct: 118 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 156

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 61  IERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI-----ENLDTLINL-------- 105
           +E L L  N I++IE    + L +L  LEL+DN LTVI     E L  L  L        
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 106 EILDLSFNRIREIKGLDHLANLEKL-YLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN 164
            I   +FNR+  +  LD L  L+KL Y+       + N      LK L LG   I+ + N
Sbjct: 161 SIPSYAFNRVPSLMRLD-LGELKKLEYISEGAFEGLFN------LKYLNLGMCNIKDMPN 213
Query: 165 LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLY 219
           L  L  LEEL +  N    I       L+SL KL +++ Q + +      + L +L +L 
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELN 272
Query: 220 LSENGLTTIEN 230
           L+ N L+++ +
Sbjct: 273 LAHNNLSSLPH 283

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 84  KELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE 141
           + L L +N + +I+      L +LE+L L  N IR+I                    ++ 
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI--------------------EVG 117
Query: 142 NVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
             + L  L  LEL DN + +I +   + L+ L EL+L  N I  I + A     +++ L 
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 200 CNRLRTIE-----NLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ--N 252
              L+ +E       E L NL  L L    +  + NL     LE L+++ N    I+  +
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGS 237
Query: 253 IAHLTELQEFWINDNQVS 270
              L+ L++ W+ ++QVS
Sbjct: 238 FHGLSSLKKLWVMNSQVS 255

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 157 NKIRIIENLDGLTNLE----ELYLGKNKISRID-NLASLTKLNILSLQCNRLRTIENLEA 211
           + IRI E    +   E    EL+     I ++D  L++L     L+L  N +  I +L  
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSG 68
Query: 212 LTNLTQLYLSENGLTTIENLLS-NEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVS 270
           + NL  L L  N +  IENL +  + LE L ++YN+I+ +  I  L  L+  ++++N+++
Sbjct: 69  MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT 128
Query: 271 DWNTVNVLENNKQLQTIYLDRNPVAQD 297
           +W  ++ L    +L+ + L  NP+  D
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYND 155

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 129/291 (44%), Gaps = 67/291 (23%)
Query: 83  LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR--EIKGLDHLANLEKLYLCSNKIS 138
           L+ELEL +N ++ +E    + L NL  L L  NR++   +     L+NL KL +  NKI 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 139 KIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI--DNLASLTK 192
            + +     L  LK LE+GDN +  I +    GL +LE+L L K  ++ I  + L+ L  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 193 LNILSLQ--------------CNRLRTIE-----NLEALT-------NLTQLYLSENGLT 226
           L +L L+                RL+ +E      L+ +T       NLT L ++   LT
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 227 TIENLLSNE--KLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS------------ 270
            +  L       L  L+++YN IS I+   +  L  LQE  +   Q++            
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 271 ------DWNTVNVLENN-----KQLQTIYLDRNPVAQDPN----YRRKIKL 306
                   N +  LE +       L+T+ LD NP+A D      +RR+ +L
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL 348

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 64  LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTV--IENLDTLINLEILDLSFNRIREIK 119
           L L  N I K+E      L  LKEL L  NQL    +   D+L  L +LDL  N++  + 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 120 G--LDHLANLEKLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEEL 174
               D L +L++L++C NK++++   ++ L  L  L L  N+++ I +   D L++L   
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
Query: 175 YLGKNK 180
           YL  N 
Sbjct: 165 YLFGNP 170

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR--IDNLASLTKLNILSLQCNRLRT 205
           ++L L DN+I  +E    D L NL+ELYLG N++    +    SLT+L +L L  N+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 206 IEN--LEALTNLTQLYLSENGLT 226
           + +   + L +L +L++  N LT
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT 125

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 46/228 (20%)
Query: 101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVL------ 152
           TL++L+  D+S  R  + KGL HL     L L +NKISKI  +    L+KL+ L      
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLY---ALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 153 ---------------ELGDNKIRIIEN--LDGLTNLEELYLGKNKI-------SRIDNLA 188
                           + DN+IR +      GL N+  + +G N +          D L 
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNK 246
              KLN L +   +L  I   +    L +L+L  N +  IE  +LL   KL  L + +N+
Sbjct: 173 ---KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 247 ISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           I +I+N  ++ L  L+E  +++N++S       L + K LQ +YL  N
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTN 274

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 77  IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-G-LDHLANLEKLYL 132
              LT L  L L  NQL  +     D L  L  L L+ N++  +  G  DHL  L+KLYL
Sbjct: 55  FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 133 CSNKISKIEN--VDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLA 188
             N++  + +   D L KLK L L  N+++ I     D LTNL+ L L  N++  + + A
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 189 --SLTKLNILSL-----QCNRLRTI 206
              L KL  ++L      C+R  T+
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETL 199

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 107 ILDLSFNRIREIKGLD--HLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNK---- 158
           +LDL  N+I EIK  D  +L NL  L L +NKISKI       L KL+ L L  N+    
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 159 ----------IRIIEN---------LDGLTNLEELYLGKN--KISRIDNLA--SLTKLNI 195
                     +R+ EN          +GL  +  + LG N  K S I+N A   + KL+ 
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 196 LSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN- 252
           + +    + TI       +LT+L+L  N +T ++  +L     L  L +++N IS + N 
Sbjct: 176 IRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 253 -IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            +A+   L+E  +N+N++        L ++K +Q +YL  N
Sbjct: 235 SLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNN 273

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 38/221 (17%)
Query: 107 ILDLSFNRIREIKGLD--HLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNK---- 158
           +LDL  N+I EIK  D  +L NL  L L +NKISKI       L KL+ L L  N+    
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 159 ----------IRIIEN---------LDGLTNLEELYLGKN--KISRIDNLA--SLTKLNI 195
                     +R+ EN          +GL  +  + LG N  K S I+N A   + KL+ 
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 196 LSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN- 252
           + +    + TI       +LT+L+L  N +T ++  +L     L  L +++N IS + N 
Sbjct: 176 IRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 253 -IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            +A+   L+E  +N+N++        L ++K +Q +YL  N
Sbjct: 235 SLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNN 273

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 77  IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-G-LDHLANLEKLYL 132
              LT L  L L  NQL  +     D L  L  L L+ N++  +  G  DHL  L+KLYL
Sbjct: 55  FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 133 CSNKISKIEN--VDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLA 188
             N++  + +   D L KLK L L  N+++ I     D LTNL+ L L  N++  + + A
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 189 --SLTKLNILSLQCNRL 203
              L KL  ++L  N+ 
Sbjct: 175 FDRLGKLQTITLFGNQF 191

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 10/126 (7%)
Query: 152 LELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIE 207
           L+L  N ++ + N   D LT+L +LYLG NK+  + N     LT L  L+L  N+L+++ 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 208 N--LEALTNLTQLYLSENGLTTIENLLSNE--KLETLDVAYNKISIIQN--IAHLTELQE 261
           N   + LT L +L L+ N L ++ + + ++  +L+ L +  N++  + +     LT LQ 
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 262 FWINDN 267
            W++DN
Sbjct: 153 IWLHDN 158

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 64  LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
           L+L  N ++ + N     LT LKEL L +NQL  + +   D L NL  L L  N+++ + 
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 119 KG-LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
           KG  D L NL +L L +N++  +     D L +LK L L DN+++ + +   D LT+L  
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Query: 174 LYL 176
           ++L
Sbjct: 210 IWL 212

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66  LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
           L WN ++ + +    +   L+ L+L   ++  IE+    +L +L  L L+ N I+ +   
Sbjct: 36  LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 95
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
               L++L+KL      ++ +EN  + HLK LK L +  N     ++ E    LTNLE L
Sbjct: 96  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 175 YLGKNKISRI 184
            L  NKI  I
Sbjct: 156 DLSSNKIQSI 165

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 66  LRWNLIKKIENIHMLTT--LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK-- 119
           L WN ++ + +    +   L+ L+L   ++  IE+    +L +L  L L+ N I+ +   
Sbjct: 37  LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 96
Query: 120 GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN---KIRIIENLDGLTNLEEL 174
               L++L+KL      ++ +EN  + HLK LK L +  N     ++ E    LTNLE L
Sbjct: 97  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 175 YLGKNKISRI 184
            L  NKI  I
Sbjct: 157 DLSSNKIQSI 166

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 31/133 (23%)
Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
            T+LE+L L +N+I++ID+ A                       LT+L +L LS+N L +
Sbjct: 298 FTDLEQLTLAQNEINKIDDNA--------------------FWGLTHLLKLNLSQNFLGS 337
Query: 228 IENLLSN--EKLETLDVAYNKISII--QNIAHLTELQEFWINDNQ---VSDWNTVNVLEN 280
           I++ +    +KLE LD++YN I  +  Q+   L  L+E  ++ NQ   V D     + + 
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD----GIFDR 393
Query: 281 NKQLQTIYLDRNP 293
              LQ I+L  NP
Sbjct: 394 LTSLQKIWLHTNP 406

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 99  LDTLINLEILDLSFNRIREIK-----GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKV 151
            +TL +L++L+L++N+I +I      GLD   NL+ L L  N + ++   N   L K+  
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLD---NLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 152 LELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209
           ++L  N I II++     L  L+ L L  N ++ I  + S+     + L  N+L T+  +
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD---IFLSGNKLVTLPKI 399
Query: 210 EALTNLTQLYLSENGLTTIE---NLLSNEKLETLDVAYNKISII---QNIAHLTELQEFW 263
               NL  ++LSEN L  ++    LL    L+ L +  N+ S     Q  +    L++ +
Sbjct: 400 NLTANL--IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 264 INDNQVS-DWNT---VNVLENNKQLQTIYLDRN 292
           + +N +   W T    +V E    LQ +YL+ N
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
           ++   LEL  N+L  + +   D L  L  L LS N+I+ +     D L  L  LYL  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK----ISRIDNLA 188
           +  + N   D L +LK L L  N+++ + +   D LT+L++++L  N       RID L+
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	319
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-54
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-56
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-45
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-40
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-41
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-40
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-30
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-20
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-34
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-33
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-30
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-30
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-24
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-21
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-28
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-27
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-26
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-15
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	6e-07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	6e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  214 bits (548), Expect = 8e-68
 Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 2/235 (0%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNR-IREIK 119
           +  L +  N I  I  +  LT L+EL L ++ ++ I  L  L  +  L+L  N  + ++ 
Sbjct: 90  LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149

Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
            L ++  L  L +  +K+  +  + +L  L  L L  N+I  I  L  LT+L       N
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209

Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
           +I+ I  +A++T+LN L +  N++  +  L  L+ LT L +  N ++ I  +    KL+ 
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKM 269

Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
           L+V  N+IS I  + +L++L   ++N+NQ+ + + + V+     L T++L +N +
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  179 bits (457), Expect = 3e-54
 Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 4/233 (1%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             R +L+   +  +     L ++ +L +   ++  I+ ++ L NLE L+L+ N+I +I  
Sbjct: 24  GIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP 83

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN- 179
           L +L  L  LY+ +NKI+ I  + +L  L+ L L ++ I  I  L  LT +  L LG N 
Sbjct: 84  LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANH 143

Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
            +S +  L+++T LN L++  ++++ +  +  LT+L  L L+ N +  I  L S   L  
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHY 203

Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
                N+I+ I  +A++T L    I +N+++D   ++ L N  QL  + +  N
Sbjct: 204 FTAYVNQITDITPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  174 bits (444), Expect = 2e-52
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 64  LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
           L      I +I     L       L    +T +   + L ++  L ++  ++  I+G+++
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEY 64

Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
           L NLE L L  N+I+ I  + +L KL  L +G NKI  I  L  LTNL ELYL ++ IS 
Sbjct: 65  LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD 124

Query: 184 IDNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
           I  LA+LTK+  L+L  N   + +  L  +T L  L ++E+ +  +  + +   L +L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184

Query: 243 AYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            YN+I  I  +A LT L  F    NQ++D   +  + N  +L ++ +  N
Sbjct: 185 NYNQIEDISPLASLTSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  174 bits (443), Expect = 3e-52
 Identities = 55/204 (26%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 69  NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
           + +  +  +  +T L  L + ++++  +  +  L +L  L L++N+I +I  L  L +L 
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH 202

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
                 N+I+ I  V ++ +L  L++G+NKI  +  L  L+ L  L +G N+IS I+ + 
Sbjct: 203 YFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVK 262

Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNK 246
            LTKL +L++  N++  I  L  L+ L  L+L+ N L     E +     L TL ++ N 
Sbjct: 263 DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 247 ISIIQNIAHLTELQEFWINDNQVS 270
           I+ I+ +A L+++      +  + 
Sbjct: 323 ITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  159 bits (404), Expect = 2e-46
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 4/211 (1%)

Query: 83  LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
              L      +  I     L       L    + ++   + L ++ KL +   K++ I+ 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
           +++L  L+ L L  N+I  I  L  L  L  LY+G NKI+ I  L +LT L  L L  + 
Sbjct: 62  IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN 121

Query: 203 LRTIENLEALTNLTQLYLSENGLTT-IENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
           +  I  L  LT +  L L  N   + +  L +   L  L V  +K+  +  IA+LT+L  
Sbjct: 122 ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS 181

Query: 262 FWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             +N NQ+ D   ++ L +   L       N
Sbjct: 182 LSLNYNQIED---ISPLASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  156 bits (397), Expect = 2e-45
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 2/189 (1%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
             L +  + +K +  I  LT L  L L  NQ+  I  L +L +L       N+I +I  +
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV 217

Query: 122 DHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKI 181
            ++  L  L + +NKI+ +  + +L +L  LE+G N+I  I  +  LT L+ L +G N+I
Sbjct: 218 ANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277

Query: 182 SRIDNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
           S I  L +L++LN L L  N+L     E +  LTNLT L+LS+N +T I  L S  K+++
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337

Query: 240 LDVAYNKIS 248
            D A   I 
Sbjct: 338 ADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (263), Expect = 4e-26
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 3/150 (2%)

Query: 149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN 208
              L      I  I     L       L K  ++ +     L  +  L +   ++ +I+ 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 209 LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
           +E LTNL  L L+ N +T I  L +  KL  L +  NKI+ I  + +LT L+E ++N++ 
Sbjct: 62  IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDN 121

Query: 269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
           +SD   ++ L N  ++ ++ L  N    D 
Sbjct: 122 ISD---ISPLANLTKMYSLNLGANHNLSDL 148

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.8 bits (247), Expect = 8e-24
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L +  N I  +  +  L+ L  LE+  NQ++ I  +  L  L++L++  N+I +I  
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV 282

Query: 121 LDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGK 178
           L++L+ L  L+L +N++     E +  L  L  L L  N I  I  L  L+ ++      
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342

Query: 179 NKISR 183
             I +
Sbjct: 343 QVIKK 347

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  198 bits (503), Expect = 9e-59
 Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 3/236 (1%)

Query: 83  LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
           + E       +  I   D        +L    + +    + L +++++   ++ I  ++ 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR 202
           + +L  +  L L  NK+  I+ L  L NL  L+L +NKI  + +L  L KL  LSL+ N 
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG 120

Query: 203 LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF 262
           +  I  L  L  L  LYL  N +T I  L    KL+TL +  N+IS I  +A LT+LQ  
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 180

Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318
           +++ N +SD   +  L   K L  + L        P   +   +V   +   D +L
Sbjct: 181 YLSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  186 bits (472), Expect = 2e-54
 Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             +  L+   +      + L ++ ++   ++ +  ++ +  L N+  L L+ N++ +IK 
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP 82

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L +L NL  L+L  NKI  + ++  LKKLK L L  N I  I  L  L  LE LYLG NK
Sbjct: 83  LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 142

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+ I  L+ LTKL+ LSL+ N++  I  L  LT L  LYLS+N ++ +  L   + L+ L
Sbjct: 143 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202

Query: 241 DVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
           ++   +       + ++L         D  +     ++   + ++    +
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  179 bits (454), Expect = 7e-52
 Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 1/226 (0%)

Query: 64  LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
            +     IK+I          +  L    +T     + L +++ +  + + I+ ++G+ +
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 63

Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
           L N+ KL+L  NK++ I+ + +LK L  L L +NKI+ + +L  L  L+ L L  N IS 
Sbjct: 64  LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123

Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
           I+ L  L +L  L L  N++  I  L  LT L  L L +N ++ I  L    KL+ L ++
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183

Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289
            N IS ++ +A L  L    +   +  +   +N   N     T+  
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLN-KPINHQSNLVVPNTVKN 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  182 bits (464), Expect = 9e-56
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 3/250 (1%)

Query: 69  NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
             I  I     L    ++    + +T       L  +  L      +  I+G+ +L NL 
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
            L L  N+I+ +  + +L K+  LEL  N ++ +  + GL +++ L L   +I+ +  LA
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
            L+ L +L L  N++  I  L  LTNL  L +    ++ +  L +  KL TL    NKIS
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC 308
            I  +A L  L E  + +NQ+SD   V+ L N   L  + L    +   P +     +V 
Sbjct: 187 DISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

Query: 309 PWIVQIDATL 318
             +       
Sbjct: 244 NVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  179 bits (456), Expect = 1e-54
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 1/228 (0%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             ++    + +        L  +  L  +   +T IE +  L NL  L+L  N+I ++  
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP 80

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L +L  + +L L  N +  +  +  L+ +K L+L   +I  +  L GL+NL+ LYL  N+
Sbjct: 81  LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+ I  LA LT L  LS+   ++  +  L  L+ LT L   +N ++ I  L S   L  +
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
            +  N+IS +  +A+ + L    + +  +++   V    N      + 
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  172 bits (439), Expect = 4e-52
 Identities = 58/211 (27%), Positives = 101/211 (47%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           I  L      +  IE +  L  L  LEL DNQ+T +  L  L  +  L+LS N ++ +  
Sbjct: 43  ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +  L +++ L L S +I+ +  +  L  L+VL L  N+I  I  L GLTNL+ L +G  +
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           +S +  LA+L+KL  L    N++  I  L +L NL +++L  N ++ +  L +   L  +
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
            +    I+      +   +    +     + 
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  158 bits (402), Expect = 1e-46
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 3/205 (1%)

Query: 90  DNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149
              + VI     L N   +    + + +      L  +  L      ++ IE V +L  L
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNL 65

Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209
             LEL DN+I  +  L  LT + EL L  N +  +  +A L  +  L L   ++  +  L
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQV 269
             L+NL  LYL  N +T I  L     L+ L +   ++S +  +A+L++L     +DN++
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 270 SDWNTVNVLENNKQLQTIYLDRNPV 294
           SD   ++ L +   L  ++L  N +
Sbjct: 186 SD---ISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  145 bits (368), Expect = 1e-41
 Identities = 55/191 (28%), Positives = 93/191 (48%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L L+ N I  +  +  LT + ELEL  N L  +  +  L +++ LDL+  +I ++  
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L+NL+ LYL  N+I+ I  +  L  L+ L +G+ ++  +  L  L+ L  L    NK
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS I  LASL  L  + L+ N++  +  L   +NL  + L+   +T      +N  +   
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPN 244

Query: 241 DVAYNKISIIQ 251
            V     + I 
Sbjct: 245 VVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 198 LQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLT 257
            Q   +  I    AL N  ++   ++ +T        + + TL      ++ I+ + +L 
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN 63

Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
            L    + DNQ++D   +  L+N  ++  + L  NP+
Sbjct: 64  NLIGLELKDNQITD---LAPLKNLTKITELELSGNPL 97

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  181 bits (462), Expect = 1e-55
 Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 3/235 (1%)

Query: 84  KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENV 143
            E       +  I + D        +L    + +    + L +++++   ++ I  ++ +
Sbjct: 5   SETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGI 64

Query: 144 DHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL 203
            +L  +  L L  NK+  I+ L  L NL  L+L +NK+  + +L  L KL  LSL+ N +
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 204 RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
             I  L  L  L  LYL  N +T I  L    KL+TL +  N+IS I  +A LT+LQ  +
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 264 INDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL 318
           ++ N +SD   +  L   K L  + L        P   +   +V   +   D +L
Sbjct: 185 LSKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  177 bits (450), Expect = 6e-54
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 5/234 (2%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             +  L+   +      + L ++ ++   ++ +  ++ +  L N+  L L+ N++ +IK 
Sbjct: 26  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP 85

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L +L NL  L+L  NK+  + ++  LKKLK L L  N I  I  L  L  LE LYLG NK
Sbjct: 86  LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK 145

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+ I  L+ LTKL+ LSL+ N++  I  L  LT L  LYLS+N ++ +  L   + L+ L
Sbjct: 146 ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 205

Query: 241 DVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           ++   +       + ++L         D  +    T  ++ ++   +   +  +
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLV---TPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  172 bits (439), Expect = 3e-52
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 5/239 (2%)

Query: 69  NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
             IK+I +        +  L    +T     + L +++ +  + + I+ ++G+ +L N+ 
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
           KL+L  NK++ I+ + +LK L  L L +NK++ + +L  L  L+ L L  N IS I+ L 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
            L +L  L L  N++  I  L  LT L  L L +N ++ I  L    KL+ L ++ N IS
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 249 IIQNIAHLTELQEFWINDNQVSD-----WNTVNVLENNKQLQTIYLDRNPVAQDPNYRR 302
            ++ +A L  L    +   +  +      + + V    K      +    ++ D +Y +
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  179 bits (455), Expect = 7e-53
 Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 3/230 (1%)

Query: 69  NLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLE 128
           N +  ++ +  LTTL+ L++  N+++ I  L  L NLE L  + N+I +I  L  L NL+
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 224

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA 188
           +L L  N++  I  +  L  L  L+L +N+I  +  L GLT L EL LG N+IS I  LA
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 284

Query: 189 SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
            LT L  L L  N+L  I  +  L NLT L L  N ++ I  + S  KL+ L    NK+S
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344

Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
            + ++A+LT +       NQ+SD   +  L N  ++  + L+       P
Sbjct: 345 DVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  178 bits (454), Expect = 1e-52
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 1/228 (0%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +ERL +  N +  I  +  LT L+ L   +NQ++ I  L  L NL+ L L+ N++++I  
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L NL  L L +N+IS +  +  L KL  L+LG N+I  I  L GLT L  L L +N+
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           +  I  +++L  L  L+L  N +  I  + +LT L +L+   N ++ + +L +   +  L
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY 288
              +N+IS +  +A+LT + +  +ND   ++   VN   N     T+ 
Sbjct: 359 SAGHNQISDLTPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  175 bits (445), Expect = 2e-51
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 4/234 (1%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             + +L    +    +   L  +  L+     +  I+ ++ L NL  ++ S N++ +I  
Sbjct: 26  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP 85

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L +L  L  + + +N+I+ I  + +L  L  L L +N+I  I+ L  LTNL  L L  N 
Sbjct: 86  LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 145

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           IS I  L+ LT L  LS   N++  ++ L  LT L +L +S N ++ I  L     LE+L
Sbjct: 146 ISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 204

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
               N+IS I  +  LT L E  +N NQ+ D   +  L +   L  + L  N +
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQI 255

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  168 bits (427), Expect = 1e-48
 Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 4/229 (1%)

Query: 64  LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
            + +   I +I     L    +  L    +T   +   L  +  L      I+ I G+++
Sbjct: 7   TITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEY 66

Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
           L NL ++   +N+++ I  + +L KL  + + +N+I  I  L  LTNL  L L  N+I+ 
Sbjct: 67  LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 126

Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
           ID L +LT LN L L  N +  I  L  LT+L QL    N +T ++ L +   LE LD++
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDIS 185

Query: 244 YNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            NK+S I  +A LT L+     +NQ+SD   +  L     L  + L+ N
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (290), Expect = 3e-29
 Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 27/220 (12%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L L  N I  +  +  LT L EL+L  NQ++ I  L  L  L  L+L+ N++ +I  
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 304

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           + +L NL  L L  N IS I  V  L KL+ L   +NK+  + +L  LTN+  L  G N+
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 364

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTI------------------------ENLEALTNLT 216
           IS +  LA+LT++  L L                                  +    + T
Sbjct: 365 ISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 217 QLYLSENGLTTIENLLSN-EKLETLDVAYNKIS--IIQNI 253
           +  ++ N  +    +     +  T+       S  + Q +
Sbjct: 425 EPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLL 232
                   I++I    +L +     L    +    +   L  +T L     G+ +I+ + 
Sbjct: 6   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE 65

Query: 233 SNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
               L  ++ + N+++ I  + +LT+L +  +N+NQ++D   +  L N   L  + L  N
Sbjct: 66  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNN 122

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  162 bits (411), Expect = 2e-48
 Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 1/185 (0%)

Query: 64  LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
            + R   I ++     L    +  L    +T + +   L  ++  +   + I+ + G+  
Sbjct: 2   SIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
             NL++L+L  N+IS +  +  L KL+ L +  N+++ +  +     L  L+L  N++  
Sbjct: 62  FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRD 120

Query: 184 IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVA 243
            D+L  L  L ILS++ N+L++I  L  L+ L  L L  N +T    L   +K+  +D+ 
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180

Query: 244 YNKIS 248
             K  
Sbjct: 181 GQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  152 bits (386), Expect = 9e-45
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 2/204 (0%)

Query: 85  ELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVD 144
           E       +  +     L N    +L    + ++     L+ ++     ++ I  +  + 
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQ 60

Query: 145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLR 204
               LK L L  N+I  +  L  LT LEEL + +N++  ++ + S   L+ L L  N LR
Sbjct: 61  FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELR 119

Query: 205 TIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWI 264
             ++L  L NL  L +  N L +I  L    KLE LD+  N+I+    +  L ++    +
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179

Query: 265 NDNQVSDWNTVNVLENNKQLQTIY 288
              +  +   V          T+ 
Sbjct: 180 TGQKCVN-EPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  147 bits (372), Expect = 1e-42
 Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 4/206 (1%)

Query: 113 NRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLE 172
             I ++     LAN  K  L    ++ + +   L  ++     ++ I+ +  +   TNL+
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLK 66

Query: 173 ELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLL 232
           EL+L  N+IS +  L  LTKL  LS+  NRL+ +  + +   L++L+L  N L   ++L+
Sbjct: 67  ELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLI 125

Query: 233 SNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             + LE L +  NK+  I  +  L++L+   ++ N++++      L   K++  I L   
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQ 182

Query: 293 PVAQDPNYRRKIKLVCPWIVQIDATL 318
               +P   +    +   +   D   
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  139 bits (353), Expect = 7e-40
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 6/216 (2%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
             +  L    +  + +   L+ ++     ++ +  +  +    NL+ L LS N+I ++  
Sbjct: 21  AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP 80

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L  LE+L +  N++  +  +     L  L L +N++R  ++L  L NLE L +  NK
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-----ENLLSNE 235
           +  I  L  L+KL +L L  N +     L  L  +  + L+              L    
Sbjct: 140 LKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

Query: 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
            ++  D  +     I N     +    W       +
Sbjct: 200 TVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  150 bits (381), Expect = 4e-42
 Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 19/250 (7%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L L  N IK +          L+ELEL +N ++ +E    + L NL  L L  NR++
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTN 170
            I       L+NL KL +  NKI  + +     L  LK LE+GDN +  I +    GL +
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 171 LEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLT 226
           LE+L L K  ++ I    L+ L  L +L L+   +  I +   + L  L  L +S     
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 227 TI--ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNK 282
                N L    L +L + +  ++ +  +A  HL  L+   ++ N +S     ++L    
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SMLHELL 272

Query: 283 QLQTIYLDRN 292
           +LQ I L   
Sbjct: 273 RLQEIQLVGG 282

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  141 bits (358), Expect = 9e-39
 Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 19/249 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           E L L  N++  +E    + L  L+ L L  N+L +I       L NL  LD+S N+I  
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 118 IKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           +       L NL+ L +  N +  I +     L  L+ L L    +  I    L  L  L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 172 EELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTT 227
             L L    I+ I   +   L +L +L +           N     NLT L ++   LT 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 228 IEN--LLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQ 283
           +    +     L  L+++YN IS I+      L  LQE  +   Q++             
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNY 297

Query: 284 LQTIYLDRN 292
           L+ + +  N
Sbjct: 298 LRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (345), Expect = 7e-37
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 19/250 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             L LR N +K I       L+ L +L++ +N++ ++ +     L NL+ L++  N +  
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 118 IKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           I       L +LE+L L    ++ I      HL  L VL L    I  I +     L  L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 172 EELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT 227
           + L +           N      L  LS+    L  +    +  L  L  L LS N ++T
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 228 IEN--LLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQ 283
           IE   L    +L+ + +   ++++++  A   L  L+   ++ NQ++     +V  +   
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGN 321

Query: 284 LQTIYLDRNP 293
           L+T+ LD NP
Sbjct: 322 LETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (333), Expect = 3e-35
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 17/229 (7%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
           T  + L+L  N++  +      +  +LE L+L+ N +  ++    ++L NL  L L SN+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 137 ISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASL 190
           +  I       L  L  L++ +NKI I+ +     L NL+ L +G N +  I +   + L
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNK 246
             L  L+L+   L +I    L  L  L  L L    +  I +       +L+ L++++  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 247 I--SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
              ++  N  +   L    I    ++       + +   L+ + L  NP
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYNP 259

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 9e-30
 Identities = 58/227 (25%), Positives = 83/227 (36%), Gaps = 40/227 (17%)

Query: 62  ERLLLRWNLIKKIENI--HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
            +L +  N I  + +     L  LK LE+ DN L  I +     L +LE L L    +  
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 118 IKG--LDHLANLEKLYLCSNKISKI--------------------------ENVDHLKKL 149
           I    L HL  L  L L    I+ I                           N  +   L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRT 205
             L +    +  +    +  L  L  L L  N IS I+   L  L +L  + L   +L  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAYNKIS 248
           +E      L  L  L +S N LTT+E  +  S   LETL +  N ++
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  146 bits (371), Expect = 6e-41
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 17/224 (7%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L L  N I+ I+      L  L+ L+L  N +  IE    + L NL  L+L  NR+ 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGD-NKIRIIEN--LDGLT 169
            I      +L+ L++L+L +N I  I +   + +  L+ L+LG+  ++  I     +GL+
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT 227
           NL  L L    +  I NL  L KL+ L L  N L  I     + L +L +L++ ++ +  
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 228 IE-NLLSN-EKLETLDVAYNKISIIQNIA--HLTELQEFWINDN 267
           IE N   N + L  +++A+N ++++ +     L  L+   ++ N
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  146 bits (370), Expect = 1e-40
 Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
           T  + L L++NQ+ +I+      L +LEIL LS N IR I     + LANL  L L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGK-NKISRIDN--LAS 189
           ++ I N    +L KLK L L +N I  I +   + + +L  L LG+  ++S I       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 190 LTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKI 247
           L+ L  L+L    LR I NL  L  L +L LS N L+ I          L+ L +  ++I
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 248 SIIQN--IAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
            +I+     +L  L E  +  N ++    +  ++      L+ I+L  NP
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  120 bits (302), Expect = 5e-31
 Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 33/220 (15%)

Query: 83  LKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISK 139
             ++      L  + + + T  N  +L+L  N+I+ IK     HL +LE L L  N I  
Sbjct: 45  FSKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102

Query: 140 IENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI--DNLASLTKL 193
           IE    + L  L  LEL DN++  I N     L+ L+EL+L  N I  I       +  L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162

Query: 194 NILSLQ-CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN 252
             L L    RL  I    A   L+                    L  L++A   +  I N
Sbjct: 163 RRLDLGELKRLSYISE-GAFEGLS-------------------NLRYLNLAMCNLREIPN 202

Query: 253 IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +  L +L E  ++ N +S        +    LQ +++ ++
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS 241

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  146 bits (370), Expect = 1e-40
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 17/224 (7%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L L  N I+ I+      L  L+ L+L  N +  IE    + L +L  L+L  N + 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGD-NKIRIIEN--LDGLT 169
            I     ++L+ L +L+L +N I  I +   + +  L  L+LG+  K+  I     +GL 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT 227
           NL+ L LG   I  + NL  L  L  L +  N    I       L++L +L++  + ++ 
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 228 IEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDN 267
           IE         L  L++A+N +S + +     L  L E  ++ N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  144 bits (364), Expect = 9e-40
 Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 20/230 (8%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
           +  + L L +N + +I+      L +LE+L L  N IR+I     + LA+L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 137 ISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGK-NKISRIDN--LAS 189
           ++ I +   ++L KL+ L L +N I  I +   + + +L  L LG+  K+  I       
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 190 LTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKI 247
           L  L  L+L    ++ + NL  L  L +L +S N    I          L+ L V  +++
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 248 SIIQN--IAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
           S+I+      L  L E  +  N +S   ++  ++    + L  ++L  NP
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  143 bits (362), Expect = 2e-39
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 17/224 (7%)

Query: 83  LKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISK 139
             ++      L+ + + + +  N   L+L  N I+ I+     HL +LE L L  N I +
Sbjct: 56  FSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 140 IENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI--DNLASLTKL 193
           IE    + L  L  LEL DN + +I +   + L+ L EL+L  N I  I       +  L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

Query: 194 NILSLQ-CNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
             L L    +L  I     E L NL  L L    +  + NL     LE L+++ N    I
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233

Query: 251 QN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +      L+ L++ W+ ++QVS     N  +    L  + L  N
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 214 NLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVS 270
             +++  +  GL+ + + + SN     L++  N I +IQ     HL  L+   +  N + 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
               V        L T+ L  N
Sbjct: 113 QI-EVGAFNGLASLNTLELFDN 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  140 bits (355), Expect = 1e-39
 Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 16/243 (6%)

Query: 61  IERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            +   +  + +K+           +KEL+L  N L+ I    L     LE+L+LS N + 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 117 EIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYL 176
           E   L+ L+ L  L L +N + ++        ++ L   +N I  +         + +YL
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVS-CSRGQGKKNIYL 127

Query: 177 GKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIENL 231
             NKI+ + +L     +++  L L+ N + T+       +   L  L L  N +  ++  
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

Query: 232 LSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
           +   KL+TLD++ NK++ +         +    + +N++        L  ++ L+   L 
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLR 245

Query: 291 RNP 293
            N 
Sbjct: 246 GNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 6e-39
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 13/248 (5%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI 118
           ++ L L  N + +I    +   T L+ L L  N L    +L++L  L  LDL+ N ++E+
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95

Query: 119 KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLD--GLTNLEELYL 176
                  ++E L+  +N IS++      +  K + L +NKI ++ +LD    + ++ L L
Sbjct: 96  L---VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 177 GKNKISRIDN---LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
             N+I  ++     AS   L  L+LQ N +  ++       L  L LS N L  +     
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211

Query: 234 N-EKLETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR 291
           +   +  + +  NK+ +I+  +     L+ F +  N        +    N+++QT+    
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 292 NPVAQDPN 299
                  N
Sbjct: 272 VKKLTGQN 279

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 3e-29
 Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 16/200 (8%)

Query: 102 LINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
               +I  ++ + +++          N+++L L  N +S+I    +    KL++L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
            +    +L+ L+ L  L L  N +  +    S+  L+      N +  +           
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH---AANNNISRVS-CSRGQGKKN 124

Query: 218 LYLSENGLTTIENLL--SNEKLETLDVAYNKISIIQN---IAHLTELQEFWINDNQVSDW 272
           +YL+ N +T + +L      +++ LD+  N+I  +      A    L+   +  N +   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-- 182

Query: 273 NTVNVLENNKQLQTIYLDRN 292
             V       +L+T+ L  N
Sbjct: 183 -DVKGQVVFAKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 6e-22
 Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 9/195 (4%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
           + + L  N I  + +      + ++ L+L  N++  +       +   LE L+L +N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 117 EIKGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIEN-LDGLTNLEEL 174
           ++KG    A L+ L L SNK++ +         +  + L +NK+ +IE  L    NLE  
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 175 YLGKNKISRIDNLASLTKLN-ILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
            L  N           +K   + ++    ++ +         T   L   G    E+L +
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ-NEEECTVPTLGHYGAYCCEDLPA 301

Query: 234 NEKLETLDVAYNKIS 248
                 + + ++   
Sbjct: 302 PFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 207 ENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEF 262
           E  +         ++++ L         S   ++ LD++ N +S I    +A  T+L+  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            ++ N + +      LE+   L+T+ L+ N
Sbjct: 64  NLSSNVLYE---TLDLESLSTLRTLDLNNN 90

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  137 bits (348), Expect = 2e-38
 Identities = 60/253 (23%), Positives = 100/253 (39%), Gaps = 24/253 (9%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
             L+L  N I KI       L  L+ L L  NQL  +        L+ L +  N I +++
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR 137

Query: 120 G--LDHLANLEKLYLCSNKI--SKIENV--DHLKKLKVLELGDNKIRIIENLDGLTNLEE 173
               + L  +  + L +N +  S IEN     +KKL  + + D  I  I       +L E
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTE 196

Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE 229
           L+L  NKI+++D   L  L  L  L L  N +  ++N  L    +L +L+L+ N L  + 
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 256

Query: 230 NLLSN-EKLETLDVAYNKISIIQNIA--------HLTELQEFWINDNQVSDWN-TVNVLE 279
             L++ + ++ + +  N IS I +                   +  N V  W    +   
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 280 NNKQLQTIYLDRN 292
                  + L   
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  135 bits (341), Expect = 2e-37
 Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 22/254 (8%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L L+ N I +I++     L  L  L L +N+++ I       L+ LE L LS N+++
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 117 EIKGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRI--IEN--LDGLTN 170
           E+        L++L +  N+I+K+     + L ++ V+ELG N ++   IEN    G+  
Sbjct: 114 ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
           L  + +    I+ I        L  L L  N++  ++   L+ L NL +L LS N ++ +
Sbjct: 173 LSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 229 E-NLLSN-EKLETLDVAYNKISIIQN-IAHLTELQEFWINDNQ-----VSDWNTVNVLEN 280
           +   L+N   L  L +  NK+  +   +A    +Q  ++++N       +D+        
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 281 NKQLQTIYLDRNPV 294
                 + L  NPV
Sbjct: 292 KASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (316), Expect = 8e-34
 Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 20/228 (8%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
                L+L +N++T I++     L NL  L L  N+I +I       L  LE+LYL  N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 137 ISKIENVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI----DNLASL 190
           + ++      K L+ L + +N+I  +     +GL  +  + LG N +            +
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKIS 248
            KL+ + +    + TI       +LT+L+L  N +T +    L     L  L +++N IS
Sbjct: 171 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 249 IIQN--IAHLTELQEFWINDNQVSDWNTV-NVLENNKQLQTIYLDRNP 293
            + N  +A+   L+E  +N+N++     V   L ++K +Q +YL  N 
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 17/137 (12%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
           +  L L  N I K++   +  L  L +L L  N ++ ++N  L    +L  L L+ N++ 
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 117 EI-KGLDHLANLEKLYLCSNKISKIEN--------VDHLKKLKVLELGDNKIRIIE---- 163
           ++  GL     ++ +YL +N IS I +                 + L  N ++  E    
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 164 NLDGLTNLEELYLGKNK 180
               +     + LG  K
Sbjct: 314 TFRCVYVRAAVQLGNYK 330

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  135 bits (342), Expect = 2e-37
 Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 32/262 (12%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
           ++ L L  N I  I N  +     L+ L L  N +  IE     +L +LE LDLS+N + 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV---DHLKKLKVLELGDN-KIRIIEN--LDGL 168
            +       L++L  L L  N    +       HL KL++L +G+      I+     GL
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
           T LEEL +  + +   +   L S+  ++ L L   +   +    ++  +++  L L +  
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 225 LTTI----------ENLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVSDWN 273
           L T            +L+       + +    +  +++ +  ++ L E   + NQ+    
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--- 290

Query: 274 TV--NVLENNKQLQTIYLDRNP 293
           +V   + +    LQ I+L  NP
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  115 bits (291), Expect = 4e-30
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 26/234 (11%)

Query: 90  DNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENV--D 144
              L  I   L     ++ LDLS NRI  I    L    NL+ L L SN I+ IE     
Sbjct: 40  SGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 145 HLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLASLTKLNILSLQ 199
            L  L+ L+L  N +  + +     L++L  L L  N    +      + LTKL IL + 
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 200 CN-RLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIA 254
                  I+      LT L +L +  + L + E   L S + +  L +   +  ++  I 
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 255 --HLTELQEFWINDNQVSDWN-------TVNVLENNKQLQTIYLDRNPVAQDPN 299
               + ++   + D  +  ++         N L      + + +    + Q   
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  138 bits (348), Expect = 4e-37
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 7/238 (2%)

Query: 84  KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIEN 142
           + + L D       +  T   L   +LS  +   ++  L+    L++L    NK   +  
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTI 388

Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDN----LASLTKLNILSL 198
           +  ++ L  L      ++    L  +  +   YL   +   +            + +L L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 199 QCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN-EKLETLDVAYNKISIIQNIAHLT 257
               L  + +LE L  +T L LS N L  +   L+    LE L  + N +  +  +A+L 
Sbjct: 449 AHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP 508

Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID 315
            LQE  + +N++     +  L +  +L  + L  N + Q+   + ++  + P +  I 
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 94.8 bits (235), Expect = 7e-22
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 34  SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQL 93
           +LD    E E     S  +  +         L    L++          ++ L L    L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 94  TVIENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVL 152
           TV+ +L+ L+ +  LDLS NR+R +   L  L  LE L    N +  ++ V +L +L+ L
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 513

Query: 153 ELGDNKI---RIIENLDGLTNLEELYLGKNKISRIDNL 187
            L +N++     I+ L     L  L L  N + + + +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 3e-11
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 61  IERLLLRWNLIKKIE-NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
           +  L L  N ++ +   +  L  L+ L+  DN L  ++ +  L  L+ L L  NR+++  
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 120 GLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVL 152
            +  L     L  L L  N + + E       + L  +  +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  132 bits (335), Expect = 9e-37
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 22/230 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIE----NLDTLINLEILDLSFNR 114
             RL L  N ++ + +     LT L +L L  N L+       +     +L+ LDLSFN 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 115 IREI-KGLDHLANLEKLYLCSNKISKIENVD---HLKKLKVLELGDNKIRIIEN--LDGL 168
           +  +      L  LE L    + + ++        L+ L  L++     R+  N   +GL
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 169 TNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
           ++LE L +  N        D    L  L  L L   +L  +      +L++L  L +S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209

Query: 224 GLTTIE-NLLSN-EKLETLDVAYNKISIIQNIA---HLTELQEFWINDNQ 268
              +++         L+ LD + N I   +        + L    +  N 
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  123 bits (311), Expect = 2e-33
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 21/227 (9%)

Query: 84  KELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKI 140
            E+      LT +   + +  +   L+L  N+++ +     D L  L KL L SN +S  
Sbjct: 10  TEIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 141 E----NVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRIDN---LASLTK 192
                +      LK L+L  N +  +  N  GL  LE L    + + ++       SL  
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 193 LNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTT--IENLLSN-EKLETLDVAYNKI 247
           L  L +     R   N     L++L  L ++ N      + ++ +    L  LD++  ++
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 248 SIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             +   A   L+ LQ   ++ N           +    LQ +    N
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 3e-19
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 62  ERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
           E L  + + +K++        L  L  L++      V  N   + L +LE+L ++ N  +
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 117 EI---KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLT 169
           E         L NL  L L   ++ ++     + L  L+VL +  N    ++      L 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 170 NLEELYLGKNKISRI--DNLASL-TKLNILSLQCNRLR 204
           +L+ L    N I       L    + L  L+L  N   
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 214 NLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVS 270
           + T++  +  GLT++   + S+     L++  NK+  + +     LT+L +  ++ N +S
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 271 DWN-TVNVLENNKQLQTIYLDRN 292
                         L+ + L  N
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFN 88

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  128 bits (324), Expect = 2e-36
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 33/203 (16%)

Query: 127 LEKLYLCSNKISKIENVDHLKKLKV----LELGDNKI-RIIENLDGLTNLEELYLGKNKI 181
           + K     + I   E    +   +     L      I ++   L  L   + L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 182 SRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLD 241
            +I +L+ +  L ILSL  N ++ IENL+A+ +                      LE L 
Sbjct: 61  EKISSLSGMENLRILSLGRNLIKKIENLDAVAD---------------------TLEELW 99

Query: 242 VAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD---- 297
           ++YN+I+ +  I  L  L+  ++++N++++W  ++ L    +L+ + L  NP+  D    
Sbjct: 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

Query: 298 ---PNYRRKIKLVCPWIVQIDAT 317
                YR ++    P + ++D  
Sbjct: 160 NATSEYRIEVVKRLPNLKKLDGM 182

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  109 bits (275), Expect = 3e-29
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 88  LYDNQLTVIENLDTLINLEI----LDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIEN 142
              + + + E   +++  E     L      I ++   L  L   + L L +N I KI +
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS 65

Query: 143 VDHLKKLKVLELGDNKIRIIENLDGLTN-LEELYLGKNKISRIDNLASLTKLNILSLQCN 201
           +  ++ L++L LG N I+ IENLD + + LEEL++  N+I+ +  +  L  L +L +  N
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 202 RLRT---IENLEALTNLTQLYLSENGLTTIENLLSNE 235
           ++     I+ L AL  L  L L+ N L       +  
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 20/131 (15%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLIN-LEILDLSFNRIREIKG 120
           + L L  N I+KI ++  +  L+ L L  N +  IENLD + + LE L +S+N+I  + G
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           ++ L NL  LY+ +NKI+    +D L  L                     LE+L L  N 
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALD-------------------KLEDLLLAGNP 151

Query: 181 ISRIDNLASLT 191
           +       + T
Sbjct: 152 LYNDYKENNAT 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 59  VCIERLLLRWNLIKKIENIHMLT-TLKELELYDNQLTVIENLDTLINLEILDLSFNRIRE 117
             +  L L  NLIKKIEN+  +  TL+EL +  NQ+  +  ++ L+NL +L +S N+I  
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN 129

Query: 118 IKGLDHLA---NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNL 171
              +D LA    LE L L  N +      ++          + +I +++ L  L  L
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENN-------ATSEYRIEVVKRLPNLKKL 179

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  128 bits (324), Expect = 3e-36
 Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 63  RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
             LL  +    I     + +L  + L +  +T +  ++   N++ L ++         + 
Sbjct: 27  NGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPIS 85

Query: 123 HLANLEKLYLCSNKIS--KIENVDHLKKLKVLELGDNKIRI--IENLDGLTNLEELYLGK 178
            L+NLE+L +    ++  KI N+  L  L +L++  +      +  ++ L  +  + L  
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 179 N-KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE 229
           N  I+ I  L +L +L  L++Q + +     +E    L QLY     +   +
Sbjct: 146 NGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  121 bits (307), Expect = 8e-34
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 6/177 (3%)

Query: 80  LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139
                   L  +    I     + +L  + L+   + ++ G+++  N++ L + +   + 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80

Query: 140 IENVDHLKKLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNI 195
              +  L  L+ L +    +    I NL GLT+L  L +  +      +  + +L K+N 
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 196 LSLQ-CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ 251
           + L     +  I  L+ L  L  L +  +G+     +    KL  L      I   +
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  121 bits (305), Expect = 1e-33
 Identities = 34/195 (17%), Positives = 80/195 (41%), Gaps = 6/195 (3%)

Query: 82  TLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE 141
             ++  L  +Q  V     T        L  +    I     + +L  + L +  ++ + 
Sbjct: 2   AAEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANIT-EAQMNSLTYITLANINVTDLT 60

Query: 142 NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNILSLQ 199
            +++   +K L + +        + GL+NLE L +    ++  +I NL+ LT L +L + 
Sbjct: 61  GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 200 CNRL--RTIENLEALTNLTQLYLSEN-GLTTIENLLSNEKLETLDVAYNKISIIQNIAHL 256
            +      +  +  L  +  + LS N  +T I  L +  +L++L++ ++ +   + I   
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF 180

Query: 257 TELQEFWINDNQVSD 271
            +L + +     +  
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRI--RE 117
           + L +          I  L+ L+ L +    +T   I NL  L +L +LD+S +      
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 118 IKGLDHLANLEKLYLCSN-KISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYL 176
           +  ++ L  +  + L  N  I+ I  +  L +LK L +  + +     ++    L +LY 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188

Query: 177 GKNKISRI 184
               I   
Sbjct: 189 FSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 1e-20
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 25/173 (14%)

Query: 124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISR 183
                   L  +  + I     +  L  + L +  +  +  ++   N+++L +     + 
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ-MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80

Query: 184 IDNLASLTKLNILSLQCNRLRT--IENLEALTNLTQLYLSENGLTTIENLLSNEKLETLD 241
            + ++ L+ L  L +    + +  I NL  LT+LT L +S +                  
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD--------------- 125

Query: 242 VAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
                 SI+  I  L ++    ++ N       +  L+   +L+++ +  + V
Sbjct: 126 -----DSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQV 269
                     L ++    I        L  + +A   ++ +  I +   +++  IN+   
Sbjct: 20  STFKAYLNGLLGQSSTANITEA-QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA 78

Query: 270 SDWNTVNVLENNKQLQTIYLDRNPV 294
           ++    N +     L+ + +    V
Sbjct: 79  TN---YNPISGLSNLERLRIMGKDV 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  128 bits (324), Expect = 2e-35
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 23/222 (10%)

Query: 90  DNQLTVI-ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENV--D 144
              L  +   +      + + L  NRI  +         NL  L+L SN +++I+     
Sbjct: 20  QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 145 HLKKLKVLELGDN-KIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQ 199
            L  L+ L+L DN ++R ++     GL  L  L+L +  +  +       L  L  L LQ
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 200 CNRLRTIEN--LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA- 254
            N L+ + +     L NLT L+L  N ++++ E        L+ L +  N+++ +   A 
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 255 -HLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
             L  L   ++  N +S    +    L   + LQ + L+ NP
Sbjct: 198 RDLGRLMTLYLFANNLS---ALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  128 bits (323), Expect = 3e-35
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 17/204 (8%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSN- 135
              + + L+ N+++ +         NL IL L  N +  I       LA LE+L L  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 136 KISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LAS 189
           ++  ++      L +L  L L    ++ +      GL  L+ LYL  N +  + +     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 190 LTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE-NLLSN-EKLETLDVAYN 245
           L  L  L L  NR+ ++       L +L +L L +N +  +  +   +  +L TL +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 246 KISIIQNIA--HLTELQEFWINDN 267
            +S +   A   L  LQ   +NDN
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  125 bits (316), Expect = 3e-34
 Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 17/202 (8%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFN-RI 115
            +R+ L  N I  +          L  L L+ N L  I+      L  LE LDLS N ++
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 116 REIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLT 169
           R +       L  L  L+L    + ++       L  L+ L L DN ++ + +     L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 170 NLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGL 225
           NL  L+L  N+IS +       L  L+ L L  NR+  +       L  L  LYL  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 226 TTIEN--LLSNEKLETLDVAYN 245
           + +    L     L+ L +  N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (324), Expect = 6e-35
 Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 23/252 (9%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
             L+L  N I KI       L  L++L +  N L  I   +   +L  L +  NRIR++ 
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVP 139

Query: 120 G--LDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
                 L N+  + +  N +             KL  L + + K+  I   D    L EL
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNEL 198

Query: 175 YLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN 230
           +L  NKI  I+   L   +KL  L L  N++R IEN  L  L  L +L+L  N L+ +  
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258

Query: 231 LLSN-EKLETLDVAYNKISIIQN--------IAHLTELQEFWINDNQVSDWN-TVNVLEN 280
            L + + L+ + +  N I+ +                     + +N V  W         
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 281 NKQLQTIYLDRN 292
                 I     
Sbjct: 319 VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (324), Expect = 6e-35
 Identities = 67/255 (26%), Positives = 108/255 (42%), Gaps = 23/255 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L L+ N I ++       L  L  L L +N+++ I       L  L+ L +S N + 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 117 EIKGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR--IIEN--LDGLTN 170
           EI   +  ++L +L +  N+I K+       L+ +  +E+G N +     E    DGL  
Sbjct: 116 EIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173

Query: 171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
           L  L + + K++ I        LN L L  N+++ IE   L   + L +L L  N +  I
Sbjct: 174 LNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 229 E-NLLSN-EKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQ-----VSDWNTVNVLEN 280
           E   LS    L  L +  NK+S +   +  L  LQ  +++ N      V+D+  V     
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

Query: 281 NKQLQTIYLDRNPVA 295
                 I L  NPV 
Sbjct: 293 RAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (299), Expect = 3e-31
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 17/226 (7%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
                L+L +N ++ +       L +L  L L  N+I +I  K    L  L+KLY+  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 137 ISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLASLT 191
           + +I   +    L  L + DN+IR +      GL N+  + +G N +             
Sbjct: 114 LVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISI 249
           KLN L +   +L  I   +    L +L+L  N +  IE   LL   KL  L + +N+I +
Sbjct: 173 KLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 250 IQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           I+N  ++ L  L+E  +++N++S       L + K LQ +YL  N 
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (291), Expect = 3e-30
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 26/230 (11%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK 119
           ++L +  N + +I   ++ ++L EL ++DN++  +       L N+  +++  N +    
Sbjct: 105 QKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS- 162

Query: 120 GLDHLA----NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
           G +  A     L  L +   K++ I   D  + L  L L  NKI+ IE   L   + L  
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN 230
           L LG N+I  I+N  L+ L  L  L L  N+L  +   L  L  L  +YL  N +T +  
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

Query: 231 --------LLSNEKLETLDVAYNKISI--IQNIA--HLTELQEFWINDNQ 268
                    +       + +  N +    +Q      +T+       + +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 30/135 (22%)

Query: 169 TNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
            +   L L  N IS +  D+   L  L  L L  N++  I       L  L +LY+S+N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 225 LTTI-ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
           L  I  NL S+  L  L +  N+I  +                          V    + 
Sbjct: 114 LVEIPPNLPSS--LVELRIHDNRIRKVPK-----------------------GVFSGLRN 148

Query: 284 LQTIYLDRNPVAQDP 298
           +  I +  NP+    
Sbjct: 149 MNCIEMGGNPLENSG 163

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  124 bits (314), Expect = 5e-34
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 20/205 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + L L +N ++ + +        L+ L+L   ++  IE+    +L +L  L L+ N I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN---LDGLT 169
            +       L++L+KL      ++ +EN    HLK LK L +  N I+  +       LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
           NLE L L  NKI  I       L  +  LN+ L L  N +  I+        L +L L  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209

Query: 223 NGLTTIEN--LLSNEKLETLDVAYN 245
           N L ++ +        L+ + +  N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  124 bits (314), Expect = 5e-34
 Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 20/207 (9%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
            + K L+L  N L  + +    +   L++LDLS   I+ I+      L++L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
           I  +       L  L+ L   +  +  +EN  +  L  L+EL +  N I      +  ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 190 LTKLNILSLQCNRLRTIEN--LEALTNLT----QLYLSENGLTTIE-NLLSNEKLETLDV 242
           LT L  L L  N++++I    L  L  +      L LS N +  I+       +L+ L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 243 AYNKISIIQNIA--HLTELQEFWINDN 267
             N++  + +     LT LQ+ W++ N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  122 bits (307), Expect = 5e-33
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)

Query: 104 NLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKI 159
           + + LDLSFN +R +          L+ L L   +I  IE+     L  L  L L  N I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 160 RIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIENLEA---L 212
           + +      GL++L++L   +  ++ ++N     L  L  L++  N +++ +  E    L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 213 TNLTQLYLSENGLTTIE-----NLLSNEKLE-TLDVAYNKISIIQNIA-HLTELQEFWIN 265
           TNL  L LS N + +I       L     L  +LD++ N ++ IQ  A     L+E  ++
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208

Query: 266 DNQVSDWNTVNVLENNKQLQTIYLDRNP 293
            NQ+       + +    LQ I+L  NP
Sbjct: 209 TNQLKSVPD-GIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 14/134 (10%)

Query: 60  CIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNR 114
            +++L+     +  +EN  I  L TLKEL +  N +   +       L NLE LDLS N+
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 115 IREIKG--LDHLANLE----KLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRIIEN--L 165
           I+ I    L  L  +      L L  N ++ I+       +LK L L  N+++ + +   
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIF 220

Query: 166 DGLTNLEELYLGKN 179
           D LT+L++++L  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (315), Expect = 3e-33
 Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + +  + + ++K+    +     ++ L L D Q+  I+         ++ L + FN IR
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTN 170
            +      ++  L  L L  N +S +      +  KL  L + +N +  IE+      T+
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 171 LEELYLGKNKISRID------------------NLASLTKLNILSLQCNRLRTIENLEAL 212
           L+ L L  N+++ +D                   LA    +  L    N +  +      
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVN 225

Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS 270
             LT L L  N LT    LL+   L  +D++YN++  I       +  L+  +I++N++ 
Sbjct: 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
             N     +    L+ + L  N
Sbjct: 286 ALNL--YGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 3e-31
 Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 12/237 (5%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
             L +  N +++IE+      T+L+ L+L  N+LT ++ L  + +L   ++S+N +    
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST-- 200

Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
            L     +E+L    N I+ +       +L +L+L  N +     L     L E+ L  N
Sbjct: 201 -LAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 180 KISRIDN--LASLTKLNILSLQCNRLRTIEN-LEALTNLTQLYLSENGLTTIE-NLLSNE 235
           ++ +I       + +L  L +  NRL  +    + +  L  L LS N L  +E N    +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

Query: 236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +LE L + +N I  ++ ++    L+   ++ N     +   +  N  +      D++
Sbjct: 319 RLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 5e-28
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 34/247 (13%)

Query: 76  NIHMLTTLKELELYDNQLTVIENLD--TLINLEILDLSFNRIREIKG--LDHLANLEKLY 131
           N+       ++ +      V    +  TL N +I+    + +R++    LD    +E L 
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 132 LCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN- 186
           L   +I +I+     +   ++ L +G N IR +       +  L  L L +N +S +   
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 187 -LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----------NLLS 233
              +  KL  LS+  N L  IE+   +A T+L  L LS N LT ++          N+  
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195

Query: 234 NE--------KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
           N          +E LD ++N I++++      EL    +  N ++D      L N   L 
Sbjct: 196 NLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD---TAWLLNYPGLV 251

Query: 286 TIYLDRN 292
            + L  N
Sbjct: 252 EVDLSYN 258

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (318), Expect = 9e-33
 Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 17/243 (6%)

Query: 66  LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA 125
           L    I+++++       + LEL + +      L  L +L+ L  + N+         L 
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 126 NLEKLYLCSNKISKIENV----DHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNK 180
           +LE L L  N +S              LK L+L  N +  +  N  GL  LE L    + 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 181 ISRIDN---LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI---ENLL 232
           + ++       SL  L  L +     R   N     L++L  L ++ N        +   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 233 SNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
               L  LD++  ++  +   A   L+ LQ   +  NQ+       + +    LQ I+L 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLH 526

Query: 291 RNP 293
            NP
Sbjct: 527 TNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (294), Expect = 2e-29
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 22/232 (9%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE----NLDTLINLEILDLSFNRIRE 117
           +RL    N      +   L +L+ L+L  N L+       +     +L+ LDLSFN +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 118 I-KGLDHLANLEKLYLCSNKISKIENV---DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           +      L  LE L    + + ++        L+ L  L++     R+  N   +GL++L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 172 EELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLT 226
           E L +  N        D    L  L  L L   +L  +      +L++L  L ++ N L 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 227 TIEN--LLSNEKLETLDVAYNKIS-IIQNIAHLTELQEFWINDNQVSDWNTV 275
           ++ +        L+ + +  N        I +L+     W+N N   +  + 
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR----WLNKNSQKEQGSA 555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (277), Expect = 3e-27
 Identities = 54/257 (21%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
            + K L+L  N L  + +    +   L++LDLS   I+ I       L++L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
           I  +       L  L+ L   +  +  +EN  +  L  L+EL +  N I      +  ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLT----QLYLSENGLTTIE-NLLSNEKLETLDV 242
           LT L  L L  N++++I   +L  L  +      L LS N +  I+       +L  L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 243 AYNKISI---IQNIAHLTELQEFWINDNQVSDWNTVNVLENN--KQLQTIYLDRNPVAQD 297
             N  S+      I  L  L+   +   +  +   +   + +  + L  + ++   +A  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 298 PNYRRKIKLVCPWIVQI 314
             Y   I  +   +  +
Sbjct: 268 DYYLDDIIDLFNCLTNV 284

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (271), Expect = 2e-26
 Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 31/263 (11%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + L L +N ++ + +        L+ L+L   ++  IE+    +L +L  L L+ N I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 117 EI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRII---ENLDGLT 169
            +       L++L+KL      ++ +EN    HLK LK L +  N I+     E    LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
           NLE L L  NKI  I       L  +  LN+ L L  N +  I+        L +L L  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 223 NGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTEL-------------QEFWINDNQV 269
           N  +        + L  L+V    +   +N  +L +              +EF +     
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 270 SDWNTVNVLENNKQLQTIYLDRN 292
              + +++      + +  L   
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSV 292

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 7e-23
 Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 26/256 (10%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--------LDTLINLEILDLSF 112
           + +L LR N          +  L  LE++   L    N           L  L  L +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 113 NRIREIKGL--------DHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN 164
            R+  +           + L N+    L S  I ++++  +    + LEL + K      
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 165 LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE----NLEALTNLTQLYL 220
           L  L +L+ L    NK     +   L  L  L L  N L        +    T+L  L L
Sbjct: 322 L-KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 221 SENGLTTIENLLSN-EKLETLDVAYNKISIIQNI---AHLTELQEFWINDNQVSDWNTVN 276
           S NG+ T+ +     E+LE LD  ++ +  +        L  L    I+           
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-G 439

Query: 277 VLENNKQLQTIYLDRN 292
           +      L+ + +  N
Sbjct: 440 IFNGLSSLEVLKMAGN 455

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.4 bits (222), Expect = 5e-20
 Identities = 57/280 (20%), Positives = 102/280 (36%), Gaps = 48/280 (17%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             L+L  N I+ +       L++L++L   +  L  +EN  +  L  L+ L+++ N I+ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 118 IK---GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKV----LELGDNKIRIIE-NLDG 167
            K      +L NLE L L SNKI  I   ++  L ++ +    L+L  N +  I+     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 168 LTNLEELYLGKNKISR---IDNLASLTKLNILSLQCNRLRTIENLE-----ALTNLTQLY 219
              L +L L  N  S       +  L  L +  L     R   NLE     AL  L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 220 LSENGLTTIENLLSN--------EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
           + E  L  ++  L +          + +  +    I  +++ ++    Q   + + +   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 272 ------------------WNTVNVLENNKQLQTIYLDRNP 293
                                     +   L+ + L RN 
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 13/156 (8%)

Query: 61  IERLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
           ++ L L +N +  +  N   L  L+ L+   + L  +       +L NL  LD+S    R
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 117 EIK--GLDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRIIEN--LDGLT 169
                  + L++LE L +  N   +    +    L+ L  L+L   ++  +     + L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 170 NLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203
           +L+ L +  N++  + +     LT L  + L  N  
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 12/134 (8%)

Query: 61  IERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
           +E L  + + +K++        L  L  L++      V  N   + L +LE+L ++ N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 116 REI---KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGL 168
           +E         L NL  L L   ++ ++     + L  L+VL +  N+++ + +   D L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 169 TNLEELYLGKNKIS 182
           T+L++++L  N   
Sbjct: 518 TSLQKIWLHTNPWD 531

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (314), Expect = 1e-32
 Identities = 51/242 (21%), Positives = 102/242 (42%), Gaps = 16/242 (6%)

Query: 62  ERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           +   +  + +K+           +KEL+L  N L+ I    L     LE+L+LS N + E
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 118 IKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLG 177
              L+ L+ L  L L +N + ++        ++ L   +N I  +         + +YL 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRVS-CSRGQGKKNIYLA 128

Query: 178 KNKISRIDNLA--SLTKLNILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIENLL 232
            NKI+ + +L     +++  L L+ N + T+       +   L  L L  N +  ++  +
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 233 SNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR 291
              KL+TLD++ NK++ +         +    + +N++        L  ++ L+   L  
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRG 246

Query: 292 NP 293
           N 
Sbjct: 247 NG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (311), Expect = 3e-32
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 13/241 (5%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
           + L L  N + +I    +   T L+ L L  N L    +L++L  L  LDL+ N ++E+ 
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL 96

Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLG 177
                 ++E L+  +N IS++      +  K + L +NKI ++ +      + ++ L L 
Sbjct: 97  V---GPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 178 KNKISRIDN---LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLS 233
            N+I  ++     AS   L  L+LQ N +  ++       L  L LS N L  +     S
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS 212

Query: 234 NEKLETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
              +  + +  NK+ +I+  +     L+ F +  N        +    N+++QT+     
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 293 P 293
            
Sbjct: 273 K 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 3e-24
 Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 102 LINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
               +I  ++ + +++          N+++L L  N +S+I    +    KL++L L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 158 KIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ 217
            +    +L+ L+ L  L L  N +  +    S+  L+      N +  +           
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH---AANNNISRVS-CSRGQGKKN 124

Query: 218 LYLSENGLTTIENLL--SNEKLETLDVAYNKISIIQN---IAHLTELQEFWINDNQVSDW 272
           +YL+ N +T + +L      +++ LD+  N+I  +      A    L+   +  N + D 
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD- 183

Query: 273 NTVNVLENNKQLQTIYLDRN 292
             V       +L+T+ L  N
Sbjct: 184 --VKGQVVFAKLKTLDLSSN 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.2 bits (242), Expect = 8e-23
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 38/264 (14%)

Query: 73  KIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI--KGLDHLANLEKL 130
            ++ + +  +++ L   +N ++ +         + + L+ N+I  +        + ++ L
Sbjct: 91  YVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 131 YLCSNKISKIEN---VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI-DN 186
            L  N+I  +           L+ L L  N I  ++       L+ L L  NK++ +   
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209

Query: 187 LASLTKLNILSLQCNRLRTIEN-LEALTNLTQLYLSENGLTTIEN---LLSNEKLETLDV 242
             S   +  +SL+ N+L  IE  L    NL    L  NG            N++++T+  
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 243 AYNKISIIQNIAHLTELQEFWINDNQVSD---------------WNTVNVLENNK----- 282
              K    QN    T             D                + +   + ++     
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 283 -------QLQTIYLDRNPVAQDPN 299
                  + + I   +       +
Sbjct: 330 CERENQARQREIDALKEQYRTVID 353

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 4e-22
 Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 19/255 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDT---LINLEILDLSFNRIR 116
           + + L  N I  + +      + ++ L+L  N++  +   +       LE L+L +N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 117 EIKGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIEN-LDGLTNLEEL 174
           ++KG    A L+ L L SNK++ +         +  + L +NK+ +IE  L    NLE  
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242

Query: 175 YLGKNKISRIDNLASLTKLN-ILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIEN- 230
            L  N           +K   + ++    ++ +  +N E  T  T  +        +   
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 231 ------LLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
                  L  ++   L    ++   ++    +    +E      Q        V    + 
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-VIDQVTLRKQA 361

Query: 284 LQTIYLDRNPVAQDP 298
             T+   +  + +  
Sbjct: 362 KITLEQKKKALDEQV 376

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 37/272 (13%), Positives = 75/272 (27%), Gaps = 42/272 (15%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI-K 119
           E L L++N I  ++   +   LK L+L  N+L  +     +   +  + L  N++  I K
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231

Query: 120 GLDHLANLEKLYLCSNKISKI-------------------------ENVDHLKKLKVLEL 154
            L    NLE   L  N                              +N +      +   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 155 GDNKIRIIENLDGLTNLEELYLGKNKISRIDN---------LASLTKLNILSLQCNRLRT 205
           G      +        L  L   ++ +                +  +   +     + RT
Sbjct: 292 GAYCCEDLPA-PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLLSNEKLE---TLDVAYNKISIIQNIAHLTELQ 260
           + +           L   +  L    +       E   TL  A  +I +       + LQ
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 261 EFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
                  +  +         N  ++   + ++
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 185 DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETL 240
           +   +  +  I  +  + L+       ++  N+ +L LS N L+ I    L    KLE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +++ N +    ++  L+ L+   +N+N V +      L     ++T++   N
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANN 109

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 43/245 (17%)

Query: 62  ERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVI------------------------ 96
             + LR N +  IE  +     L+  +L  N                             
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 97  -ENLDTLINLEILDLSFNRIREIKG--LDHLANLEK-----LYLCSNKISKIE-NVDHLK 147
            +N +      +         ++     D L  L++     L    ++  ++E   ++  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 148 KLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQC 200
           + + ++    + R + +           L   K  +           A L      ++  
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 201 NRL-RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTE 258
             L    E    L  L  +      +   +  + N  +   D+  +K + + +  A L +
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456

Query: 259 LQEFW 263
           L    
Sbjct: 457 LNGEA 461

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  120 bits (304), Expect = 2e-32
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138
                L L +N L       L     L  L+L    + +++    L  L  L L  N++ 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 139 KIENV-DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKL 193
            +  +   L  L VL++  N++  +    L GL  L+ELYL  N++  +    L    KL
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 194 NILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYN 245
             LSL  N L  +    L  L NL  L L EN L TI +    +  L    +  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  116 bits (292), Expect = 1e-30
 Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
             L L  NL+       +   T L +L L   +LT ++   TL  L  LDLS N+++ + 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 120 GL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEEL 174
            L   L  L  L +  N+++ +    +  L +L+ L L  N+++ +    L     LE+L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 175 YLGKNKISRIDN--LASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSEN 223
            L  N ++ +    L  L  L+ L LQ N L TI +       L   +L  N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  111 bits (280), Expect = 5e-29
 Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 14/200 (7%)

Query: 104 NLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR 160
           +   ++     +  +   L    +   L+L  N +       +    +L  L L   ++ 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 161 IIENLDGLTNLEELYLGKNKISRIDNL-ASLTKLNILSLQCNRLRTIEN--LEALTNLTQ 217
            ++    L  L  L L  N++  +  L  +L  L +L +  NRL ++    L  L  L +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 218 LYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWN 273
           LYL  N L T+   LL+   KLE L +A N ++ +       L  L    + +N +    
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--T 186

Query: 274 TVNVLENNKQLQTIYLDRNP 293
                  +  L   +L  NP
Sbjct: 187 IPKGFFGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 212 LTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQ 268
           + +  ++   +  LT +  +L  +     L ++ N +           T L +  ++  +
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 269 VSDWNTVNVLENNKQLQTIYLDRN 292
           ++    + V      L T+ L  N
Sbjct: 67  LT---KLQVDGTLPVLGTLDLSHN 87

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (310), Expect = 2e-31
 Identities = 50/256 (19%), Positives = 96/256 (37%), Gaps = 25/256 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIRE 117
           +E + L+ +    I +   H  + L+EL+L    L+ + + L  L  L+ L LS N+   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 118 IKG--LDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDNKIRIIE----NLDGL 168
           +      +  +L  L +  N          +++L+ L+ L+L  + I   +     L  L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEA---LTNLTQLYLSEN 223
           ++L+ L L  N+   +         +L +L L   RL+  +       L  L  L LS +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 224 GLTTIEN--LLSNEKLETLDVAYNKISIIQNI-----AHLTELQEFWINDNQVSDWNTVN 276
            L             L+ L++  N               L  L+   ++   +S     +
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQH 494

Query: 277 VLENNKQLQTIYLDRN 292
              + K +  + L  N
Sbjct: 495 AFTSLKMMNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (285), Expect = 3e-28
 Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 27/257 (10%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
           ++L+L  N  + +         +L  L +  N   +      L+ L NL  LDLS + I 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 117 EI----KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN---LDG 167
                   L +L++L+ L L  N+   ++        +L++L+L   ++++ +       
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 168 LTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTI-----ENLEALTNLTQLYL 220
           L  L+ L L  + +          L  L  L+LQ N           +L+ L  L  L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 221 SENGLTTI-ENLLSN-EKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVN 276
           S   L++I ++  ++ + +  +D+++N+++      ++HL  +    +  N +S     +
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILP-S 541

Query: 277 VLENNKQLQTIYLDRNP 293
           +L    Q +TI L +NP
Sbjct: 542 LLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 8e-28
 Identities = 44/234 (18%), Positives = 90/234 (38%), Gaps = 22/234 (9%)

Query: 80  LTTLKELELYDNQLTVIENL----DTLINLEILDLSFNRIREIKG--LDHLANLEKLYLC 133
           + +L      D     I          +++E ++L  +    I        + L++L L 
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 134 SNKISKIEN-VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKIS---RIDNL 187
           +  +S++ + +  L  LK L L  NK   +         +L  L +  N          L
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 188 ASLTKLNILSLQCNRLRTIE----NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLD 241
            +L  L  L L  + + T +     L  L++L  L LS N   +++        +LE LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 242 VAYNKISIIQN---IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +A+ ++ +        +L  L+   ++ + +   ++  + +    LQ + L  N
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 1e-24
 Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 20/233 (8%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSN 135
             + + LE   N L  I+N     LINL  LDL+  +I  I          L+ L L +N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 136 KISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LAS 189
            +  +    +   K LK L      I  I+   L     LE LYLG N IS I       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLTQLYL--SENGLTTIE-NLLSNEKLETLDVAY 244
             KL +L  Q N +  +  E++ +L   T L L  + N +  IE     +   ++L+   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 245 NKISIIQ----NIAHLTELQEFWINDNQVSD-WNTVNVLENNKQLQTIYLDRN 292
            +  ++       + +  L      D    D    V        +++I L ++
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.5 bits (225), Expect = 3e-20
 Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 23/230 (10%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRI 115
           ++ L L +N    ++         L+ L+L   +L V +       L  L++L+LS + +
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 116 REIKG--LDHLANLEKLYLCSNKISKIENV-----DHLKKLKVLELGDNKIRIIEN--LD 166
                   D L  L+ L L  N   K           L +L++L L    +  I+     
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 167 GLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSE 222
            L  +  + L  N+++    + L+ L  +  L+L  N +  I    L  L+    + L +
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 223 NGLTTIENLLSNEKLETLDVAYNKISIIQNI--AHLTELQEFWINDNQVS 270
           N L    + +    LE       K+   ++    +   L+   ++D  +S
Sbjct: 557 NPLDCTCSNIYF--LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 39/195 (20%), Positives = 71/195 (36%), Gaps = 30/195 (15%)

Query: 106 EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
           +  +     + EI G     + E L    N +  I+N                       
Sbjct: 15  KTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQN--------------------TTF 53

Query: 166 DGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLS 221
             L NL  L L + +I  I      S  +L+ L L  N L  +    L     L  L+  
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 222 ENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNV 277
           + G+++I+   L + + LE+L +  N IS I+        +L+     +N +   +    
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-ED 172

Query: 278 LENNKQLQTIYLDRN 292
           + + +Q   + L+ N
Sbjct: 173 MSSLQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 218 LYLSENGLTTI-ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNT 274
                 GL  I   L ++   E L+ ++N +  IQN   + L  L    +   Q+   + 
Sbjct: 17  YNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 275 VNVLENNKQLQTIYLDRNP 293
            +  ++  +L T+ L  NP
Sbjct: 75  -DTFQSQHRLDTLVLTANP 92

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (308), Expect = 3e-31
 Identities = 51/224 (22%), Positives = 79/224 (35%), Gaps = 13/224 (5%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS 138
            T+ E  L        +      L N+  + L+   I+ ++ +      + L +   ++ 
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA----SLTKLN 194
           +   +D L  LK L L  NK  I      L +L  L L +N +S     +        L 
Sbjct: 321 QFPTLD-LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 195 ILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN---LLSNEKLETLDVAYNKISII 250
            L L  N    +  N   L  L  L    + L  +      LS EKL  LD++Y    I 
Sbjct: 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 251 QN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            +     LT L    +  N   D    NV  N   L  + L + 
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (304), Expect = 8e-31
 Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 17/247 (6%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  + L    IK +E++      + L +   QL     LD L  L+ L L+ N+      
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFK 345

Query: 121 LDHLANLEKLYLCSNKISKIEN----VDHLKKLKVLELGDNKIRII-ENLDGLTNLEELY 175
              L +L  L L  N +S              L+ L+L  N   I+  N  GL  L+ L 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 176 LGKNKISRIDN---LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-- 228
              + + R+       SL KL  L +     +   +     LT+L  L ++ N       
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 229 ENLLSN-EKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
            N+ +N   L  LD++  ++  I       L  LQ   ++ N +   ++ +       L 
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLS 524

Query: 286 TIYLDRN 292
           T+    N
Sbjct: 525 TLDCSFN 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (296), Expect = 1e-29
 Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 19/226 (8%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLSFNRIRE 117
           + L L  N          L +L  L+L  N L+             +L  LDLSFN    
Sbjct: 331 KSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 118 IKG-LDHLANLEKLYLCSNKISKIENVD---HLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           +      L  L+ L    + + ++        L+KL  L++     +I  +    GLT+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 172 EELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLT 226
             L +  N        +  A+ T L  L L   +L  I     + L  L  L +S N L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 227 TIEN--LLSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQ 268
            +++        L TLD ++N+I   + I       L  F + +N 
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (267), Expect = 7e-26
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 26/238 (10%)

Query: 81  TTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
           ++ K ++L  N L ++   +      L+ LDLS   I  I  K    L +L  L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
           I          L  L+ L   + K+  +E+  +  L  L++L +  N I         ++
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLTQ----LYLSENGLTTIE-NLLSNEKLETLDV 242
           LT L  + L  N ++TI   +L+ L    Q    L +S N +  I+       KL  L +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 243 AYNKIS---IIQNIAHLTELQEFWINDNQVSDWNTV-----NVLENNKQLQTIYLDRN 292
             N  S   +   + +L  L    +   +  D   +     +++E    +        
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (258), Expect = 1e-24
 Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 30/276 (10%)

Query: 61  IERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + + L +N +K +   +    + L+ L+L   ++  IE+     L +L  L L+ N I+
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR---IIENLDGLT 169
                    L +LE L     K++ +E+  +  L  LK L +  N I    +      LT
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
           NL  + L  N I  I       L    ++N+ L +  N +  I+        L +L L  
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 223 NGLTTI---ENLLSNEKLETLDVAYNKISIIQNIAH--------LTELQEFWINDNQVSD 271
           N  ++      L +   L    +   +    +N+          L ++          +D
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 272 -WNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKL 306
             + +        +  + L    +    +  +  K 
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 4e-22
 Identities = 53/262 (20%), Positives = 96/262 (36%), Gaps = 37/262 (14%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             L+L  N I+         LT+L+ L   + +L  +E+  +  LI L+ L+++ N I  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 118 IK---GLDHLANLEKLYLCSNKISKIENVD------HLKKLKVLELGDNKIRIIE-NLDG 167
            K      +L NL  + L  N I  I   D      + +    L++  N I  I+     
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 168 LTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIENLEALTNLT-------- 216
              L EL L  N  S       L +L  L++  L     +   NLE              
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 217 --QLYLSENGLTTIENL----LSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVS 270
             +  L+     + + +    L+N  +  + +A   I  ++++    + Q   I   Q+ 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLAN--VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK 320

Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
                    +   L+++ L  N
Sbjct: 321 Q----FPTLDLPFLKSLTLTMN 338

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 61  IERLLLRWNLIKKIEN---IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
           ++ L  + + +K++        L  L  L++      +  +     L +L  L ++ N  
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 116 REI---KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGL 168
           ++        +  NL  L L   ++ +I     D L +L++L +  N +  +++   + L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEAL 212
            +L  L    N+I             L   +L  N +  I   +  
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (309), Expect = 3e-31
 Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 19/230 (8%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKIS 138
            + +  +    +LT + + D   N+ +L+L+ N++R +        + L  L +  N IS
Sbjct: 4   VSHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 139 KIEN--VDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRIDN--LASLTK 192
           K+E      L  LKVL L  N++  +  +     TNL EL+L  N I +I N        
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 193 LNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----NLLSNEKLETLDVAYNK 246
           L  L L  N L + +      L NL +L LS N +  ++    ++ +N  L+ L+++ N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 247 ISIIQN--IAHLTELQEFWINDNQVSD--WNTVNVLENNKQLQTIYLDRN 292
           I          +  L   ++N+ Q+       + +   N  ++ + L  +
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (308), Expect = 3e-31
 Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 26/267 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR 116
           +  L + +N I K+E      L  LK L L  N+L+ +  +      NL  L L  N I+
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE----NLDGL 168
           +I         NL  L L  N +S  +      L+ L+ L L +NKI+ ++    ++   
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL-----RTIENLEALTNLTQLYLS 221
           ++L++L L  N+I         ++ +L  L L   +L       +    A T++  L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 222 ENGLTTIENL----LSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTV 275
            + L+T  N     L    L  LD++YN ++++ N   A L +L+ F++  N +    + 
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS- 289

Query: 276 NVLENNKQLQTIYLDRNPVAQDPNYRR 302
           + L     ++ + L R+   Q  +   
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  120 bits (302), Expect = 2e-30
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 26/257 (10%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
           I  L L  N ++++        + L  L++  N ++ +E      L  L++L+L  N + 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTN 170
           ++  K      NL +L+L SN I KI+N      K L  L+L  N +   +      L N
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 171 LEELYLGKNKISRID----NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
           L+EL L  NKI  +     ++ + + L  L L  N+++        A+  L  L+L+   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 225 LT-----TIENLLSNEKLETLDVAYNKISIIQNIA----HLTELQEFWINDNQVSDWNTV 275
           L       +   L+N  +  L ++ +++S   N        T L    ++ N ++     
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGN 265

Query: 276 NVLENNKQLQTIYLDRN 292
           +      QL+  +L+ N
Sbjct: 266 DSFAWLPQLEYFFLEYN 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 1e-29
 Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 33/264 (12%)

Query: 62  ERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           + L L+ N + ++  +     T L EL L  N +  I+N       NL  LDLS N +  
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 118 IK--GLDHLANLEKLYLCSNKISKIENVD----HLKKLKVLELGDNKIRIIEN--LDGLT 169
            K      L NL++L L +NKI  +++ +        LK LEL  N+I+         + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 170 NLEELYLGKNKISRID-----NLASLTKLNILSLQCNRLRTIENLE----ALTNLTQLYL 220
            L  L+L   ++            + T +  LSL  ++L T  N        TNLT L L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 221 SENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVN 276
           S N L  + N       +LE   + YN I  + +  +  L  ++   +  +      ++ 
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 277 VLE--------NNKQLQTIYLDRN 292
            L           K L+ + ++ N
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDN 339

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (290), Expect = 9e-29
 Identities = 57/241 (23%), Positives = 102/241 (42%), Gaps = 27/241 (11%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI---KGLDHLANLEKLYLCS 134
            + L  L L  N+++ IE+     L +LE+LDL  N I +    +    L N+ ++YL  
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 135 NKISKIEN--VDHLKKLKVLELGDNKIRIIEN----LDGLTNLEELYLGKNKISRIDN-- 186
           NK  ++       +  L+ L L    ++ +++       L NL  L L  N I+ I++  
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 187 LASLTKLNILSLQCNRLRTIEN----------LEALTNLTQLYLSENGLTTI-ENLLSN- 234
           L  L KL IL LQ N L  +            L+ L++L  L L  NG   I   +  + 
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 235 EKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            +L+ +D+  N ++ +      +   L+   +  N ++           + L  + +  N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 293 P 293
           P
Sbjct: 620 P 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (283), Expect = 8e-28
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 36/266 (13%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
             +  +    + KI++     L  L+ L + DN +  I++     LINL+ L LS +   
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT- 365

Query: 117 EIKGLDHLA-------NLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRII---EN 164
            ++ L +          L  L L  NKISKIE+     L  L+VL+LG N+I      + 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 165 LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN----LEALTNLTQL 218
             GL N+ E+YL  NK  ++     A +  L  L L+   L+ +++     + L NLT L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 219 YLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN----------IAHLTELQEFWIND 266
            LS N +  I +  L   EKLE LD+ +N ++ +            +  L+ L    +  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 267 NQVSDWNTVNVLENNKQLQTIYLDRN 292
           N   +   V V ++  +L+ I L  N
Sbjct: 546 NGFDE-IPVEVFKDLFELKIIDLGLN 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 3e-27
 Identities = 53/253 (20%), Positives = 98/253 (38%), Gaps = 23/253 (9%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
           E        + ++ +  + T +  L L  NQL  +          L  LD+ FN I ++ 
Sbjct: 7   EVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 119 -KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEE 173
            +    L  L+ L L  N++S++  +       L  L L  N I+ I+N       NL  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 174 LYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIE----NLEALTNLTQLYLSENGLTT 227
           L L  N +S         L  L  L L  N+++ ++    ++ A ++L +L LS N +  
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 228 IE-NLLSN-EKLETLDVAYNKIS-----IIQNIAHLTELQEFWINDNQVSDW-NTVNVLE 279
                     +L  L +   ++       +      T ++   ++++Q+S   NT  +  
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 280 NNKQLQTIYLDRN 292
               L  + L  N
Sbjct: 246 KWTNLTMLDLSYN 258

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 7e-27
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 30/238 (12%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI---ENLDTLINLEILDLSFNRI 115
           +  L L  N I KIE+     L  L+ L+L  N++      +    L N+  + LS+N+ 
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 116 REI--KGLDHLANLEKLYLCSNKISKIENV----DHLKKLKVLELGDNKIRIIEN--LDG 167
            ++       + +L++L L    +  +++       L+ L +L+L +N I  I +  L+G
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 168 LTNLEELYLGKNKISRIDN----------LASLTKLNILSLQCNRLRTI--ENLEALTNL 215
           L  LE L L  N ++R+            L  L+ L+IL+L+ N    I  E  + L  L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 216 TQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA---HLTELQEFWINDNQ 268
             + L  N L T+  ++ +N   L++L++  N I+ ++          L E  +  N 
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (270), Expect = 3e-26
 Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 38/268 (14%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLT-----VIENLDTLINLEILDLSFNR 114
           ++L L  N IK+      H +  L  L L + QL       +       ++  L LS ++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 115 IREI-----KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--L 165
           +         GL    NL  L L  N ++ + N     L +L+   L  N I+ + +  L
Sbjct: 234 LSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 166 DGLTNLEELYLGKN---------KISRIDN--LASLTKLNILSLQCNRLRTIEN--LEAL 212
            GL N+  L L ++          + +ID+     L  L  L+++ N +  I++     L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 213 TNLTQLYLSENGLTTIE------NLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWI 264
            NL  L LS +  +           L++  L  L++  NKIS I++   + L  L+   +
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             N++    T       + +  IYL  N
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN----------LDTLINLEILD 109
             L L  N I  I +  +  L  L+ L+L  N L  +            L  L +L IL+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 110 LSFNRIREI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN- 164
           L  N   EI  +    L  L+ + L  N ++ +     ++   LK L L  N I  +E  
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 165 --LDGLTNLEELYLGKNKIS 182
                  NL EL +  N   
Sbjct: 603 VFGPAFRNLTELDMRFNPFD 622

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  121 bits (305), Expect = 4e-31
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 18/228 (7%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135
             T++ L +    L    +     L  ++ + +  +++  +      HL +LE L L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 136 KISKI-----ENVDHLKKLKVLELGDNKIRIIEN----LDGLTNLEELYLGKNKISRI-D 185
            + +              L+ L L  N +R ++     L  L NL  L + +N    + D
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
           +     K+  L+L    +R ++       L  L +S N L +    L    L+ L ++ N
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFLPR--LQELYISRN 461

Query: 246 KISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           K+  + + +    L    I+ NQ+       + +    LQ I+L  NP
Sbjct: 462 KLKTLPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (268), Expect = 4e-26
 Identities = 53/264 (20%), Positives = 111/264 (42%), Gaps = 32/264 (12%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
           ++ L L +N I  I +  +     L+ L L  +++  IE     +L +LE LDLS N + 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGD-NKIRIIEN--LDGL 168
            +       L++L+ L L  N    +       +L  L+ L +G+      I      GL
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
           T+L EL +    +    +  L S+  ++ L+L  +    +     + L+++  L L +  
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 225 LTTIE-------------NLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVS 270
           L   +               L+       D ++N++  +++ I  L+E++      N + 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 271 DW--NTVNVLENNKQLQTIYLDRN 292
           D+  +  +V+    +++T+ + R 
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRL 291

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (260), Expect = 6e-25
 Identities = 46/244 (18%), Positives = 97/244 (39%), Gaps = 22/244 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI-----ENLDTLINLEILDLSFN 113
           ++R+ +  + +  +       L +L+ L+L +N +               +L+ L LS N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 114 RIREIKG----LDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRIIENLDGL 168
            +R ++     L  L NL  L +  N    + ++    +K++ L L    IR+++     
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-CIP 430

Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI 228
             LE L +  N +        L +L  L +  N+L+T+ +      L  + +S N L ++
Sbjct: 431 QTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV 488

Query: 229 --ENLLSNEKLETLDVAYNKIS-IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
                     L+ + +  N        I +L+     W+N N   +  +     + K ++
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR----WLNKNSQKEQGSAKCSGSGKPVR 544

Query: 286 TIYL 289
           +I  
Sbjct: 545 SIIC 548

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (258), Expect = 9e-25
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN 135
              +K L+L  N++T I +  L    NL++L L  +RI  I+G     L +LE L L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 136 KISKIENV--DHLKKLKVLELGDNKIRIIEN---LDGLTNLEELYLG-KNKISRIDN--L 187
            +S + +     L  LK L L  N  + +        LTNL+ L +G     S I     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 188 ASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSN--EKLETLDVA 243
           A LT LN L ++   LR  ++  L+++ ++  L L  +    +  + ++    +  L++ 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 244 YNKISIIQ 251
              ++  Q
Sbjct: 205 DTNLARFQ 212

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 94.8 bits (236), Expect = 7e-22
 Identities = 47/269 (17%), Positives = 105/269 (39%), Gaps = 39/269 (14%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           + L+L+ + I  IE    + L +L+ L+L DN L+ + +     L +L+ L+L  N  + 
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 118 I---KGLDHLANLEKLYLCS-NKISKIENVD--HLKKLKVLELGDNKIRIIEN--LDGLT 169
           +       +L NL+ L + +    S+I  +D   L  L  LE+    +R  ++  L  + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 170 NLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIE-----NLEALTNLTQLYLSE 222
           ++  L L  ++ + +  +    L+ +  L L+   L   +       E  + + +L    
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 223 NGLT---------TIENLLSNEKLETLDVAYNKISIIQNIA----------HLTELQEFW 263
           + LT          +  +L   ++E  D   N +                     ++   
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 264 INDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           I    +    +  V    ++++ I ++ +
Sbjct: 293 IPQFYLFYDLS-TVYSLLEKVKRITVENS 320

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 40/248 (16%)

Query: 61  IERLLLRWNLIKKIENI--HMLTTLKELELYDNQLTVIE-------------NLDTLINL 105
           I  L L  +    +  I   +L++++ LEL D  L   +                     
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 106 EILDLSFNRIREIKG---------LDHLANLEKLYLCSNKISKIENVDHLK--KLKVLEL 154
            + D SFN + ++            D            ++   +  +  ++   ++ L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 155 GDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTI---- 206
               +    +     L  ++ + +  +K+  +       L  L  L L  N +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 207 -ENLEALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQN-IAHLTELQ 260
                A  +L  L LS+N L +++     LL+ + L +LD++ N    + +      +++
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 261 EFWINDNQ 268
              ++   
Sbjct: 414 FLNLSSTG 421

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 34/197 (17%)

Query: 107 ILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
           + D        I  GL   A ++ L L  NKI+ I + D                    L
Sbjct: 9   VCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGD--------------------L 46

Query: 166 DGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLS 221
               NL+ L L  ++I+ I+     SL  L  L L  N L ++ +     L++L  L L 
Sbjct: 47  RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 222 ENGLTTIEN---LLSNEKLETLDVA-YNKISIIQNIA--HLTELQEFWINDNQVSDWNTV 275
            N   T+       +   L+TL +      S I+ I    LT L E  I    + +    
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQS 165

Query: 276 NVLENNKQLQTIYLDRN 292
             L++ + +  + L  +
Sbjct: 166 QSLKSIRDIHHLTLHLS 182

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score =  112 bits (281), Expect = 3e-30
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 3/143 (2%)

Query: 176 LGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-EALTNLTQLYLSENGLTTIENLLSN 234
           L    I +     +  +   L L+  ++  IENL   L     +  S+N +  ++     
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 235 EKLETLDVAYNKISIIQNI--AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            +L+TL V  N+I  I       L +L E  + +N + +   ++ L + K L  + + RN
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

Query: 293 PVAQDPNYRRKIKLVCPWIVQID 315
           PV    +YR  +    P +  +D
Sbjct: 124 PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 107 ILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH-LKKLKVLELGDNKIRIIENL 165
           ++ L+   I +     +     +L L   KI  IEN+   L +   ++  DN+IR ++  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60

Query: 166 DGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNR---LRTIENLEALTNLTQLYL 220
             L  L+ L +  N+I RI      +L  L  L L  N    L  ++ L +L +LT L +
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 221 SENGLTTIEN 230
             N +T  ++
Sbjct: 121 LRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 94.3 bits (235), Expect = 1e-23
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 66  LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-TLINLEILDLSFNRIREIKGLDHL 124
           L   LI++          +EL+L   ++ VIENL  TL   + +D S N IR++ G   L
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 125 ANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKI---RIIENLDGLTNLEELYLGKN 179
             L+ L + +N+I +I       L  L  L L +N +     ++ L  L +L  L + +N
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

Query: 180 KISRIDN 186
            ++   +
Sbjct: 124 PVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 86  LELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH-LANLEKLYLCSNKISKIENVD 144
           ++L    +         +    LDL   +I  I+ L   L   + +    N+I K++   
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61

Query: 145 HLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR---IDNLASLTKLNILSLQ 199
            L++LK L + +N+I  I       L +L EL L  N +     +D LASL  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 200 CNRLRTIEN-----LEALTNLTQL 218
            N +   ++     +  +  +  L
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI 118
            + +    N I+K++   +L  LK L + +N++  I       L +L  L L+ N + E+
Sbjct: 44  FDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 119 KGLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVL 152
             LD LA   +L  L +  N ++  ++     +  + +++VL
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (293), Expect = 2e-29
 Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 33/262 (12%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + +  + + ++K+    +     ++ L L D Q+  I+         ++ L + FN IR
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTN 170
            +      ++  L  L L  N +S +      +  KL  L + +N +  IE+      T+
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 171 LEELYLGKNKISRID------------------NLASLTKLNILSLQCNRLRTIENLEAL 212
           L+ L L  N+++ +D                   LA    +  L    N +  +      
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVN 231

Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVS 270
             LT L L  N LT    LL+   L  +D++YN++  I       +  L+  +I++N++ 
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 271 DWNTVNVLENNKQLQTIYLDRN 292
             N     +    L+ + L  N
Sbjct: 292 ALNL--YGQPIPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 1e-24
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 34/247 (13%)

Query: 76  NIHMLTTLKELELYDNQLTVIENLD--TLINLEILDLSFNRIREIKG--LDHLANLEKLY 131
           N+       ++ +      V    +  TL N +I+    + +R++    LD    +E L 
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 132 LCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN- 186
           L   +I +I+     +   ++ L +G N IR +       +  L  L L +N +S +   
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 187 -LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----------NLLS 233
              +  KL  LS+  N L  IE+   +A T+L  L LS N LT ++          N+  
Sbjct: 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201

Query: 234 NE--------KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
           N          +E LD ++N I++++      EL    +  N ++D      L N   L 
Sbjct: 202 NLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD---TAWLLNYPGLV 257

Query: 286 TIYLDRN 292
            + L  N
Sbjct: 258 EVDLSYN 264

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 2e-23
 Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 9/191 (4%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
               + +N    +  + +   ++EL+   N + V+      + L IL L  N + +   L
Sbjct: 195 FHANVSYN---LLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWL 250

Query: 122 DHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN-LDGLTNLEELYLGK 178
            +   L ++ L  N++ KI       +++L+ L + +N++  +      +  L+ L L  
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310

Query: 179 NKISRID-NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL 237
           N +  ++ N     +L  L L  N + T+  L     L  L LS N             +
Sbjct: 311 NHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 369

Query: 238 ETLDVAYNKIS 248
               V      
Sbjct: 370 ARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 25/185 (13%)

Query: 134 SNKISKIENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LAS 189
           +  +        L   K++   ++ +R +    LD    +E L L   +I  ID    A 
Sbjct: 38  TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 97

Query: 190 LTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYN 245
              +  L +  N +R +     + +  LT L L  N L+++      +  KL TL ++ N
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157

Query: 246 KISIIQNIA--HLTELQEFWINDNQVSD---------------WNTVNVLENNKQLQTIY 288
            +  I++      T LQ   ++ N+++                +N ++ L     ++ + 
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217

Query: 289 LDRNP 293
              N 
Sbjct: 218 ASHNS 222

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.8 bits (181), Expect = 9e-15
 Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 12/233 (5%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
             L L+ N +     +     L E++L  N+L  I       +  LE L +S NR+  + 
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294

Query: 119 KGLDHLANLEKLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLG 177
                +  L+ L L  N +  +E N     +L+ L L  N I  +  L     L+ L L 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTLS 353

Query: 178 KNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL 237
            N        A    +   ++         + +    L      +  L  +   ++   +
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSV 413

Query: 238 -------ETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
                  +    A + I+ +Q+++H    Q              VN L    Q
Sbjct: 414 VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 185 DNLASLTKLNILSLQCNRLRTIENLEA--LTNLTQLYLSENGLTTIEN--LLSNEKLETL 240
            NL        + +           E   L N   +    + +  +    L S  ++E L
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 241 DVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           ++   +I  I   A  +   +Q+ ++  N +      +V +N   L  + L+RN
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERN 133

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (289), Expect = 1e-28
 Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 17/247 (6%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +    L    I+++++       + LEL + +      L  L +L+ L  + N+      
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAFS 342

Query: 121 LDHLANLEKLYLCSNKISKIENVD----HLKKLKVLELGDNKIR-IIENLDGLTNLEELY 175
              L +LE L L  N +S              LK L+L  N +  +  N  GL  LE L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 176 LGKNKISRIDN---LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-- 228
              + + ++       SL  L  L +     R   N     L++L  L ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 229 -ENLLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ 285
            +       L  LD++  ++  +       L+ LQ   ++ N           +    LQ
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQ 521

Query: 286 TIYLDRN 292
            +    N
Sbjct: 522 VLDYSLN 528

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (262), Expect = 3e-25
 Identities = 57/263 (21%), Positives = 102/263 (38%), Gaps = 31/263 (11%)

Query: 61  IERLLLRWNLIKKI--ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + L L +N ++ +   +      L+ L+L   ++  IE+    +L +L  L L+ N I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 117 EI--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR---IIENLDGLT 169
            +       L++L+KL      ++ +EN  + HLK LK L +  N I+   + E    LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 170 NLEELYLGKNKISRI-----DNLASLTKLNI-LSLQCNRLRTIE-NLEALTNLTQLYLSE 222
           NLE L L  NKI  I       L  +  LN+ L L  N +  I+        L +L L  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 223 NGLTTI---ENLLSNEKLETLDVAYNKISIIQNIAHLT----------ELQEFWINDNQV 269
           N  +       +     LE   +   +     N+               ++EF +     
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 270 SDWNTVNVLENNKQLQTIYLDRN 292
              + +++      + +  L   
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSV 292

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (260), Expect = 6e-25
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 23/235 (9%)

Query: 81  TTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
            + K L+L  N L  +   +  +   L++LDLS   I+ I       L++L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLAS 189
           I  +       L  L+ L   +  +  +EN  +  L  L+EL +  N I      +  ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 190 LTKLNILSLQCNRLRTI--ENLEALTNLT----QLYLSENGLTTIE-NLLSNEKLETLDV 242
           LT L  L L  N++++I   +L  L  +      L LS N +  I+       +L  L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 243 AYNKISIIQN---IAHLTELQEFWINDNQVSDWNTVNVLENN--KQLQTIYLDRN 292
             N  S+      I  L  L+   +   +  +   +   + +  + L  + ++  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.4 bits (243), Expect = 9e-23
 Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 30/237 (12%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             L+L  N I+ +       L++L++L   +  L  +EN  +  L  L+ L+++ N I+ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 118 IK---GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKV----LELGDNKIR-IIENLDG 167
            K      +L NLE L L SNKI  I   ++  L ++ +    L+L  N +  I      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 168 LTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIENLE-----ALTNLTQLY 219
              L +L L  N  S       +  L  L +  L     R   NLE     AL  L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 220 LSENGLTTIENLLSN--------EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
           + E  L  ++  L +          + +  +    I  +++ ++    Q   + + +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 5e-21
 Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 20/207 (9%)

Query: 62  ERLLLRWNLIKKIENIHM----LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIR 116
           E L L  N +             T+LK L+L  N +  +  N   L  LE LD   + ++
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 117 EIKG---LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRII---ENLDGL 168
           ++        L NL  L +         N   + L  L+VL++  N  +     +    L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
            NL  L L + ++ ++      SL+ L +L++  N   +++    + L +L  L  S N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 225 LTT-IENLLSN--EKLETLDVAYNKIS 248
           + T  +  L +    L  L++  N  +
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 30/258 (11%)

Query: 62  ERLLLRWNLIKKIENI------HMLTTLKELELYDNQLTVIE-NLDTLINLEILDLSFNR 114
           E L L  N I+ I          M      L+L  N +  I+      I L  L L  N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 115 IREI---KGLDHLANLEKLYLCSNKISKIENVDH--------LKKLKVLELGDNKIRIIE 163
                    +  LA LE   L   +     N++         L  L + E     +    
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 164 N-----LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL 218
           +      + LTN+    L    I R+ + +       L L   +      L  L +L +L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-KLKSLKRL 330

Query: 219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIA----HLTELQEFWINDNQVSDWNT 274
             + N      + +    LE LD++ N +S     +      T L+   ++ N V     
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--M 388

Query: 275 VNVLENNKQLQTIYLDRN 292
            +     +QL+ +    +
Sbjct: 389 SSNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 149 LKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLR 204
            K L+L  N +R +   +      L+ L L + +I  I++    SL+ L+ L L  N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 205 TIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKIS---IIQNIAHLT 257
           ++       L++L +L   E  L ++EN  +   + L+ L+VA+N I    + +  ++LT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQ----TIYLDRNP 293
            L+   ++ N++        L    Q+     ++ L  NP
Sbjct: 150 NLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 61  IERLLLRWNLIKKI---ENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
           +E L  + + +K++        L  L  L++      V  N   + L +LE+L ++ N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 116 REI---KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIEN--LDGL 168
           +E         L NL  L L   ++ ++     + L  L+VL +  N    ++      L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 169 TNLEELYLGKNKISRIDNLA---SLTKLNILSLQCNRLR-TIENLEALTNLTQL 218
            +L+ L    N I            + L  L+L  N    T E+   L  +   
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  110 bits (276), Expect = 1e-28
 Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 14/176 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           ++L L+ N +  + +   H LT L+ L L DN+L  +       L NLE L ++ N+++ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99

Query: 118 I--KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           +     D L NL +L L  N++  +     D L KL  L LG N+++ +     D LT+L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159

Query: 172 EELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
           +EL L  N++ R+   A   LT+L  L L  N+L+ +     ++L  L  L L EN
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  107 bits (270), Expect = 9e-28
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 12/160 (7%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
              K+L+L  N+L+ + +     L  L +L L+ N+++ +       L NLE L++  NK
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SL 190
           +  +     D L  L  L L  N+++ +     D LT L  L LG N++  +       L
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156

Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
           T L  L L  N+L+ +     + LT L  L L  N L  +
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  102 bits (257), Expect = 7e-26
 Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 125 ANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
           A+ +KL L SNK+S + +     L KL++L L DNK++ +       L NLE L++  NK
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----NLL 232
           +  +       L  L  L L  N+L+++     ++LT LT L L  N L ++     + L
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156

Query: 233 SNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
           ++  L+ L +  N++  +   A   LTEL+   +++NQ+         ++ ++L+ + L 
Sbjct: 157 TS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQ 213

Query: 291 RNP 293
            NP
Sbjct: 214 ENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 149 LKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLR 204
            K L+L  NK+  + +     LT L  LYL  NK+  +       L  L  L +  N+L+
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 205 TIEN--LEALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQNIA--HL 256
            +     + L NL +L L  N L ++       L+   L  L + YN++  +       L
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTYLSLGYNELQSLPKGVFDKL 156

Query: 257 TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
           T L+E  + +NQ+         +   +L+T+ LD N + + P
Sbjct: 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP 197

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (283), Expect = 3e-28
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 11/233 (4%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L    + I  +  I  LT L +L    N +T + +L    NL  L    N++  +  
Sbjct: 44  LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD- 101

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +  L  L  L   +NK++K+ +V     L  L    N +  I ++   T L EL    NK
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNK 159

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
                ++   T+L  L    N++  + ++     L +L    N +T + +L  N +L  L
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFL 217

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           D + NK++ I ++  LT+L  F  + N +++ +    +    +L T++  +  
Sbjct: 218 DCSSNKLTEI-DVTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD 265

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (270), Expect = 2e-26
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 10/213 (4%)

Query: 80  LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139
             +             I + + L  L  LD   + I ++ G++ L  L KL   SN I+ 
Sbjct: 20  FASEVAAAFEMQATDTI-SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT 78

Query: 140 IENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
           + ++     L  L    NK+  + ++  LT L  L    NK++++D ++    L  L+  
Sbjct: 79  L-DLSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCA 135

Query: 200 CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTEL 259
            N L  I ++   T LT+L    N   T  ++    +L TLD ++NKI+ + +++    L
Sbjct: 136 RNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLL 193

Query: 260 QEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
                + N ++  +    L  N QL  +    N
Sbjct: 194 NRLNCDTNNITKLD----LNQNIQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (269), Expect = 2e-26
 Identities = 49/233 (21%), Positives = 105/233 (45%), Gaps = 11/233 (4%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L    N + +I ++   T L EL+ + N+     ++     L  LD SFN+I E+  
Sbjct: 129 LTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +     L +L   +N I+K+ +++   +L  L+   NK+  I ++  LT L       N 
Sbjct: 187 VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNP 244

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           ++ +D +++L+KL  L      L  I +L   T L              ++  N +L  L
Sbjct: 245 LTELD-VSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           D     I+ + +++   +L   ++N+ ++++ +    + +N +L+++      
Sbjct: 303 DCQAAGITEL-DLSQNPKLVYLYLNNTELTELD----VSHNTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 8e-25
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L   +N I ++ ++     L  L    N +T + +L+  I L  LD S N++ EI  
Sbjct: 172 LTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEI-D 228

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           +  L  L       N ++++ +V  L KL  L      +  I +L   T L        +
Sbjct: 229 VTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCR 286

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
             +  ++   T+L +L  Q   +  + +L     L  LYL+   LT + ++  N KL++L
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTEL-DVSHNTKLKSL 344

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284
                 I    ++  +  L   +  + Q        +  N+  +
Sbjct: 345 SCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 5/198 (2%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L    N + +I ++  LT L   +   N LT + ++ TL  L  L      + EI  
Sbjct: 214 LTFLDCSSNKLTEI-DVTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEID- 270

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L H   L        +  K  +V H  +L +L+     I  + +L     L  LYL   +
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTE 329

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           ++ +D ++  TKL  LS     ++   ++  +  L   + +E    T+          T+
Sbjct: 330 LTELD-VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 241 DVAYNKISIIQNIAHLTE 258
            V+ + +    N  ++  
Sbjct: 389 AVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 10/181 (5%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           +  L      + +I ++   T L   +    +     ++     L +LD     I E+  
Sbjct: 256 LTTLHCIQTDLLEI-DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD- 313

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L     L  LYL + +++++ +V H  KLK L   +  I+   ++  +  L   +  + +
Sbjct: 314 LSQNPKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQ 372

Query: 181 ISRID-------NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
              +        +L      ++L    N +        + +     ++   L+T    ++
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

Query: 234 N 234
            
Sbjct: 433 Y 433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 2/161 (1%)

Query: 73  KIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYL 132
           K  ++   T L  L+     +T + +L     L  L L+   + E+  + H   L+ L  
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSC 346

Query: 133 CSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK 192
            +  I    +V  +  L      + +   +       N   + +  + + +  N  ++  
Sbjct: 347 VNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

Query: 193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLS 233
            +                +  N    Y   +    I   ++
Sbjct: 407 GDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVT 447

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  110 bits (276), Expect = 6e-28
 Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 17/160 (10%)

Query: 84  KELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKG---LDHLANLEKLYLCSNKISK 139
             L     QL  + ++L +     +LDLS N +  ++       L NL  L L  N ++ 
Sbjct: 21  NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKL 193
           I +     +  L+ L+L  N +  ++      L  LE L L  N I  +D  A   + +L
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138

Query: 194 NILSLQCNRLRTIE-----NLEALTNLTQLYLSENGLTTI 228
             L L  N++         +   L  L  L LS N L  +
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  102 bits (256), Expect = 4e-25
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 81  TTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSN 135
           +    L+L  N L+ +        L NL  L LS N +  I  +    + NL  L L SN
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 136 KISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DN 186
            +  ++      L+ L+VL L +N I +++    + +  L++LYL +N+ISR       +
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 187 LASLTKLNILSLQCNRLRTI--ENLEALTNLTQ--LYLSEN 223
              L KL +L L  N+L+ +   +L+ L    +  LYL  N
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 96.8 bits (241), Expect = 4e-23
 Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 61  IERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRI 115
              L L  N + ++        LT L  L L  N L  I +     + NL  LDLS N +
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 116 REIKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE-----NLD 166
             +       L  LE L L +N I  ++    + + +L+ L L  N+I         + +
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 167 GLTNLEELYLGKNKISRI--DNLASLTKLNILSLQ 199
            L  L  L L  NK+ ++   +L  L       L 
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.3 bits (198), Expect = 3e-17
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 15/133 (11%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             LLL  N +  I +     +  L+ L+L  N L  ++      L  LE+L L  N I  
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126

Query: 118 IKG--LDHLANLEKLYLCSNKISKIE-----NVDHLKKLKVLELGDNKIRII--ENLDGL 168
           +     + +A L+KLYL  N+IS+       + + L KL +L+L  NK++ +   +L  L
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 169 TNL--EELYLGKN 179
                  LYL  N
Sbjct: 187 PAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 213 TNLTQLYLSENGLTTI--ENLLSN-EKLETLDVAYNKISIIQNIA--HLTELQEFWINDN 267
           +    L LS N L+ +  E   +    L +L +++N ++ I + A   +  L+   ++ N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 268 QVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299
            +   +   +  + + L+ + L  N +     
Sbjct: 99  HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDR 129

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (283), Expect = 6e-28
 Identities = 50/234 (21%), Positives = 96/234 (41%), Gaps = 20/234 (8%)

Query: 74  IENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLSFNRIREIKG--LDHLANL 127
             ++ +   +       + +   +          ++  LDLS   +  +     + L +L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 128 EKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISR 183
           + L L  NKI+KI +     L  L+VL L  N +  + +    GL  +  + L KN I+ 
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 184 IDN--LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLD 241
           I +     L KL  L L+ N L TI  +    ++  ++LS N L T+  +        + 
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFI---PSIPDIFLSGNKLVTLPKINLT--ANLIH 407

Query: 242 VAYNKISIIQN---IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           ++ N++  +     +  +  LQ   +N N+ S  +       N  L+ ++L  N
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (275), Expect = 8e-27
 Identities = 55/274 (20%), Positives = 101/274 (36%), Gaps = 48/274 (17%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
           ++ L L +N I KI +   + L  L+ L L  N L  + +     L  +  +DL  N I 
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 117 EIKG--LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLD-------- 166
            I+      L  L+ L L  N ++ I     +  +  + L  NK+  +  ++        
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 167 ---------------GLTNLEELYLGKNKISRIDN---LASLTKLNILSLQCNRLRTIEN 208
                           + +L+ L L +N+ S        +    L  L L  N L+    
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 209 -------LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIAHLTEL 259
                   E L++L  LYL+ N L ++          L  L +  N+++++ +      L
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528

Query: 260 QEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           +   I+ NQ+   N     +    L  + +  N 
Sbjct: 529 EILDISRNQLLAPN----PDVFVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 3e-23
 Identities = 54/274 (19%), Positives = 99/274 (36%), Gaps = 44/274 (16%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI----ENLDTLINLEILDLSFNRI 115
             L L  + I  +       L  L EL LY   L+           L  L  LDLS N+I
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 116 REIK---GLDHLANLEKLYLCSNKISKIENVD----HLKKLKVLELGDNKIRIIENLD-- 166
           R +        L +L+ +   SN+I  +   +      K L    L  N +    ++D  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 167 ------GLTNLEELYLGKNKIS--------------RIDNLASLTKLNILSLQCNRLRTI 206
                     LE L +  N  +              +  +L     +       + ++  
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 207 ENL----EALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIA--HLTE 258
           +       A +++  L LS   + ++ +    + + L+ L++AYNKI+ I + A   L  
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           LQ   ++ N + +    +      ++  I L +N
Sbjct: 316 LQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 97.6 bits (243), Expect = 1e-22
 Identities = 46/229 (20%), Positives = 76/229 (33%), Gaps = 26/229 (11%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR---EIKGLDHLANLEKLYLCS 134
           L T + L L  N +  +       L  L++L+L         + +   +L NL  L L S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 135 NKISKIEN--VDHLKKLKVLELGDNKIRII----ENLDGLTNLEELYLGKNKISRI---D 185
           +KI  +       L  L  L L    +            L  L  L L KN+I  +    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 186 NLASLTKLNILSLQCNRLRTIEN--LEALT--NLTQLYLSENGLTTIE--------NLLS 233
           +   L  L  +    N++  +    LE L    L+   L+ N L +          N   
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 234 NEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNK 282
           N  LE LDV+ N  ++         + +       ++          + 
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.3 bits (237), Expect = 7e-22
 Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 28/229 (12%)

Query: 91  NQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKIS-KIENV--DH 145
             LT +     L   E L LSFN IR +       L  L+ L L S      I+     +
Sbjct: 14  CNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 146 LKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI----DNLASLTKLNILSLQ 199
           L  L++L+LG +KI  +      GL +L EL L    +S          +L  L  L L 
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 200 CNRLRTIE---NLEALTNLTQLYLSENGLTTIENL----LSNEKLETLDVAYNKISIIQN 252
            N++R++    +   L +L  +  S N +  +       L  + L    +A N +    +
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 253 IA--------HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           +             L+   ++ N  +   T N      + Q   L    
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIR 116
            I  + L  N +  +  I++  T   + L +N+L  ++    L  + +L+IL L+ NR  
Sbjct: 382 SIPDIFLSGNKLVTLPKINL--TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 117 EIKG---LDHLANLEKLYLCSNKISKIENVD-------HLKKLKVLELGDNKIRIIEN-- 164
              G        +LE+L+L  N +      +        L  L+VL L  N +  +    
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 165 LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENG 224
              LT L  L L  N+++ + +      L IL +  N+L    N +   +L+ L ++ N 
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP-NPDVFVSLSVLDITHNK 558

Query: 225 LTT 227
              
Sbjct: 559 FIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 17/179 (9%)

Query: 62  ERLLLRWNLIKKIEN---IHMLTTLKELELYDNQLTVIEN-------LDTLINLEILDLS 111
           + L+L  N               +L++L L +N L +           + L +L++L L+
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 112 FNRIREIKG--LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT 169
            N +  +      HL  L  L L SN+++ + + D    L++L++  N++    N D   
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAP-NPDVFV 547

Query: 170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI 228
           +L  L +  NK      L++        L    +        +  +     S   L ++
Sbjct: 548 SLSVLDITHNKFICECELSTFINW----LNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (276), Expect = 5e-27
 Identities = 46/258 (17%), Positives = 99/258 (38%), Gaps = 31/258 (12%)

Query: 63  RLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI--K 119
           ++    N I  I + I  LT L+ +   ++  T     +  ++ E  +  + +  E    
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFT---YDNIAVDWEDANSDYAKQYENEEL 485

Query: 120 GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKI-----------RIIENLD 166
              +L +L  + L +        + +  L +L+ L +  N+            R+ ++ D
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 167 GLTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
               ++  Y+G N +       +L  + KL +L    N++R +E       LT L L  N
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605

Query: 224 GLTTI-ENLLSN-EKLETLDVAYNKISII---QNIAHLTELQEFWINDNQVS----DWNT 274
            +  I E+  +  +++E L  ++NK+  I    N   +  +     + N++     + + 
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 275 VNVLENNKQLQTIYLDRN 292
                      T+ L  N
Sbjct: 666 SMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 3e-25
 Identities = 43/267 (16%), Positives = 88/267 (32%), Gaps = 39/267 (14%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI- 118
             L    N ++ +E       L +L+L  NQ+  I          +E L  S N+++ I 
Sbjct: 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 119 --KGLDHLANLEKLYLCSNKISKIE-------NVDHLKKLKVLELGDNKIRII--ENLDG 167
                  +  +  +    NKI           +         + L  N+I+    E    
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 168 LTNLEELYLGKNKISRI---------DNLASLTKLNILSLQCNRLRTIEN---LEALTNL 215
            + +  + L  N ++ I          N  +   L  + L+ N+L ++ +      L  L
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755

Query: 216 TQLYLSENGLTTIENLLSN-EKLETLDVAYNKI--------SIIQNIAHLTELQEFWIND 266
           + + +S N  ++      N  +L+   + + +              I     L +  I  
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 267 NQVSDWNTVNVLENNKQLQTIYLDRNP 293
           N +   +     +   QL  + +  NP
Sbjct: 816 NDIRKVDE----KLTPQLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.5 bits (240), Expect = 3e-22
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 29/259 (11%)

Query: 61  IERLLLRWNLIKKIEN---IHMLTTLKELELYDNQLTVIENLDTLINLEILDL------- 110
            +    R + I+       +     L   +L  + +     +  +     + L       
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 111 SFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT 169
             NRI  I K +  L  L+ +Y  ++  +        +          +     +   L 
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLK 491

Query: 170 NLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI-----------ENLEALTNLT 216
           +L ++ L          D L  L +L  L++ CNR  +            ++ +    + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 217 QLYLSENGLTTI---ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN 273
             Y+  N L       +L    KL  LD  +NK+  ++      +L +  ++ NQ+ +  
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 274 TVNVLENNKQLQTIYLDRN 292
             +      Q++ +    N
Sbjct: 612 E-DFCAFTDQVEGLGFSHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 33/223 (14%)

Query: 62  ERLLLRWNLIKKIE-------NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSF 112
             +   +N I           + +       + L  N++     E   T   +  + LS 
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 113 NRIREI---------KGLDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDNKIR 160
           N +  I             +   L  + L  NK++ + +      L  L  +++  N   
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 161 II-ENLDGLTNLEELYL------GKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEA 211
                    + L+   +        N+I R     + +   L  L +  N +R ++  + 
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-KL 825

Query: 212 LTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN 252
              L  L +++N   +I+  ++    +     + Y+K   I+ 
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 4e-19
 Identities = 49/275 (17%), Positives = 95/275 (34%), Gaps = 54/275 (19%)

Query: 69  NLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINL--EILDLSFNRIREI---KGLD 122
               ++ + I  LT LK L    +  TV   L     L  ++ +   +RIR       LD
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN--------LDGLTNLEEL 174
           +   L    L  + I++   +  +KK   + L D +I  + N        +  LT L+ +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 175 YLGKNKISRI---------------------DNLASLTKLNILSLQ-CNRLRTI-ENLEA 211
           Y   +  +                        + ++L  L  + L  C  +  + + L  
Sbjct: 454 YFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 212 LTNLTQLYLSENGLTTIENLLSN-----------EKLETLDVAYNKISII---QNIAHLT 257
           L  L  L ++ N   +   L ++            K++   + YN +       ++  + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +L       N+V     +     N +L  + LD N
Sbjct: 574 KLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 38/268 (14%), Positives = 84/268 (31%), Gaps = 53/268 (19%)

Query: 76  NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI--------------- 118
           ++     +  L L          + +  L  L++L    +                    
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 119 ------------KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN-- 164
                         LD+   L    L  + I++   +  +KK   + L D +I  + N  
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 165 ------LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN-LEALTNLTQ 217
                 +  LT L+ +Y   +  +  +        +  S    +    E     L +LT 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDW--EDANSDYAKQYENEELSWSNLKDLTD 495

Query: 218 LYLSENGLTTI--ENLLSNEKLETLDVAYNKIS-----------IIQNIAHLTELQEFWI 264
           + L      T   + L    +L++L++A N+             +  +     ++Q F++
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             N + ++     L+   +L  +    N
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 24/174 (13%)

Query: 62  ERLLLRWNLIKKIEN---------IHMLTTLKELELYDNQLTVIEN---LDTLINLEILD 109
             ++L  NL+  I                 L  ++L  N+LT + +     TL  L  +D
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 110 LSFNRIREI-KGLDHLANLEKLYLC------SNKISKI--ENVDHLKKLKVLELGDNKIR 160
           +S+N          + + L+   +        N+I +     +     L  L++G N IR
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 161 IIENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIENLEAL 212
            ++       L  L +  N    ID  ++    +  +  L  ++ + I   +AL
Sbjct: 820 KVDE-KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 38/227 (16%), Positives = 88/227 (38%), Gaps = 19/227 (8%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKIS 138
              KEL+++ +Q  V  +LD    +  L L+    +      +  L  L+ L   ++  +
Sbjct: 303 NFNKELDMWGDQPGV--DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET 360

Query: 139 KIENVDHLKKLKVLELGDNKIRIIEN-----LDGLTNLEELYLGKNKISRIDNLASLTKL 193
               +   ++L      + K RI  +     LD    L    L ++ I+R   +  + K 
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420

Query: 194 NILSLQCNRLRTIEN--------LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
           + +SL+  ++  + N        ++ LT L  +Y + +  T     +  E   +      
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480

Query: 246 KISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +     + ++L +L +  + +         + L +  +LQ++ +  N
Sbjct: 481 EN-EELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACN 525

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  105 bits (264), Expect = 7e-27
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 8/175 (4%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
            +  L+   +      + L ++ ++   ++ +  ++ +  L N+  L L  N++ +I  L
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81

Query: 122 DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLG 177
             L NL  L L  N++  + N   D L  LK L L +N+++ + +   D LTNL  L L 
Sbjct: 82  KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141

Query: 178 KNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
            N++  +       LT L  L L  N+L+++     + LT L  L L +N L ++
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  103 bits (259), Expect = 4e-26
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 33/222 (14%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
               +  L    +T     + L +++ +  + + I+ ++G+ +L N+  L L  NK+  I
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78

Query: 141 ENVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNIL 196
             +  L  L  L L  N+++ + N   D LTNL+EL L +N++  + +     LT L  L
Sbjct: 79  SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 197 SLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIA 254
           +L  N+L+++     + LTNLT+L LS N L ++               ++K        
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-----------VFDK-------- 179

Query: 255 HLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTIYLDRNP 293
            LT+L++  +  NQ   V D     V +    LQ I+L  NP
Sbjct: 180 -LTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  100 bits (251), Expect = 5e-25
 Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 10/173 (5%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-- 118
           I++++   + IK ++ I  L  ++ L L  N+L  I  L  L NL  L L+ N+++ +  
Sbjct: 43  IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPN 102

Query: 119 KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEEL 174
              D L NL++L L  N++  + +   D L  L  L L  N+++ +     D LTNL EL
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162

Query: 175 YLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
            L  N++  +       LT+L  L L  N+L+++ +   + LT+L  ++L +N
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW 272
               +  L +  +T          ++ +    + I  +Q I +L  ++   +  N++   
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-- 76

Query: 273 NTVNVLENNKQLQTIYLDRNPVAQDPN 299
             ++ L+    L  + L  N +   PN
Sbjct: 77  -DISALKELTNLTYLILTGNQLQSLPN 102

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 9e-27
 Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 18/232 (7%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-KG 120
                R   + ++ +  +     ELEL +  L+ +  L    +LE L  S N + E+ + 
Sbjct: 53  GNGEQREMAVSRLRDC-LDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL 109

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
              L +L         +S +        L+ L + +N++  +  L   + L+ + +  N 
Sbjct: 110 PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           + ++ +      L  ++   N+L  +  L+ L  LT +Y   N L  + +L  +  LE++
Sbjct: 165 LKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS--LESI 220

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
               N +  +  + +L  L   + ++N +       + +    L+ + +  N
Sbjct: 221 VAGNNILEELPELQNLPFLTTIYADNNLLK-----TLPDLPPSLEALNVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (258), Expect = 7e-25
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 26/223 (11%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
           + + +  N +KK+ +  +  +L+ +   +NQL  +  L  L  L  +    N ++++   
Sbjct: 156 KIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP-- 211

Query: 122 DHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKI 181
           D   +LE +   +N + ++  + +L  L  +   +N ++ + +L    +LE L +  N +
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYL 269

Query: 182 SRI-DNLASLTKLNILSLQCNRL-RTIENLEAL--------------TNLTQLYLSENGL 225
           + + +   SLT L++     + L     NL  L               +L +L +S N L
Sbjct: 270 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329

Query: 226 TTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
             +  L     LE L  ++N ++ +        L++  +  N 
Sbjct: 330 IELPALPPR--LERLIASFNHLAEV--PELPQNLKQLHVEYNP 368

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 30/209 (14%), Positives = 72/209 (34%), Gaps = 26/209 (12%)

Query: 80  LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREIKGLDHLA------------- 125
            T L+E   + + LT +    + + +      +++         +               
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 126 --NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKIS 182
                +L L +  +S +   +    L+ L    N +  + E    L +L         +S
Sbjct: 70  DRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 127

Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
            +        L  L +  N+L  +  L+  + L  + +  N L  + +L  +  LE +  
Sbjct: 128 DL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS--LEFIAA 180

Query: 243 AYNKISIIQNIAHLTELQEFWINDNQVSD 271
             N++  +  + +L  L   + ++N +  
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKK 209

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.4 bits (212), Expect = 9e-19
 Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 47/246 (19%)

Query: 62  ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL------------------DTLI 103
           E ++   N+++++  +  L  L  +   +N L  + +L                  +   
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQ 277

Query: 104 NLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIE 163
           +L  LD+S N    +  L    NL  L   SN+I  +   D    L+ L + +NK+  + 
Sbjct: 278 SLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLC--DLPPSLEELNVSNNKLIELP 333

Query: 164 NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-------------- 209
            L     LE L    N ++ +  L     L  L ++ N LR   ++              
Sbjct: 334 AL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389

Query: 210 ---EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAH--LTELQEFWI 264
              E   NL QL++  N L    ++  +  +E L +   ++      AH    +L++   
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPES--VEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

Query: 265 NDNQVS 270
             +   
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 37/179 (20%)

Query: 146 LKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNR 202
              L+      + +  +    + + +  E Y   ++  R          ++ +  L+   
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 203 LRTIENL-----------EALTNLTQLYLSENGLTTIENLLSN----------------- 234
            R    L           E   +L  L  S N LT +  L  +                 
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129

Query: 235 -EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
              LE L V+ N++  +  + + + L+   +++N +       + +    L+ I    N
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNN 183

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (267), Expect = 3e-26
 Identities = 60/303 (19%), Positives = 105/303 (34%), Gaps = 72/303 (23%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQL-TVIEN--LDTLINLEILDLSFNRI 115
           +  + L  N I ++       L  L+ L++       VI N     L +L IL L +N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 116 REIKG--LDHLANLEKLYLCSNKISKI---ENV-DHLKKLKVLELGDNKIRIIEN---LD 166
            +++    + LANLE L L    +       N    L  L++L L DN I+ I+      
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 167 GLTNLEELYLGKNKISRI--DNLASLTKLN--ILSLQCNRLRTIENLEA----------L 212
            +     L L  NK+  I  ++L +    +  +L L    L+ +                
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 213 TNLTQLYLSENGLTTIE-----------------------------------------NL 231
           T++T L LS NG                                                
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 232 LSNEKLETLDVAYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289
           L    ++T D++ +KI  +      H T+L++  +  N+++     N       L  + L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNL 330

Query: 290 DRN 292
            +N
Sbjct: 331 SQN 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 9e-24
 Identities = 65/278 (23%), Positives = 115/278 (41%), Gaps = 49/278 (17%)

Query: 62  ERLLLRWNLIKKIENIHM---LTTLKELELYDNQLTVIENLD----TLINLEILDLSFNR 114
           E L+LR N IKKI+       +     L+L  N++  I   D       +  +L LS   
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 115 IREIKGL----------DHLANLEKLYLCSNKISKIE-----NVDHLKKLKVLELGDNKI 159
           ++++                 ++  L L  N   +       +     K++ L L ++  
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 160 RI-------IENLDGLT-------NLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL 203
                     ++ D  T        ++   L K+KI  +     +  T L  L+L  N +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 204 RTIEN--LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIA--HLT 257
             I++     LT+L +L LS+N L +I   +  N +KLE LD++YN I  + + +   L 
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 258 ELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
            L+E  ++ NQ+    +V   + +    LQ I+L  NP
Sbjct: 372 NLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 3e-22
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 22/226 (9%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG---LDHLANLEKLYLCSN 135
             +  ++L  N +  +       L +L+ L +       +        L++L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 136 KISKIEN--VDHLKKLKVLELGDNKIR--IIEN--LDGLTNLEELYLGKNKISRIDN--- 186
           +  ++E    + L  L+VL L    +   ++       LT+LE L L  N I +I     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 187 LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNK 246
             ++ + ++L L  N++++I   E L N    + +   L+       +  L+ ++  +  
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLS-------SITLQDMNEYWLG 201

Query: 247 ISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
                N    T +    ++ N   +       +     +   L  +
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.8 bits (236), Expect = 6e-22
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 14/181 (7%)

Query: 57  KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLSF 112
           KE   +R        K    I   +               +N          ++  DLS 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 113 NRIREIKG--LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LD 166
           ++I  +      H  +LE+L L  N+I+KI++     L  L  L L  N +  I++   +
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344

Query: 167 GLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSE 222
            L  LE L L  N I  + +     L  L  L+L  N+L+++ +   + LT+L +++L  
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

Query: 223 N 223
           N
Sbjct: 405 N 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.7 bits (228), Expect = 6e-21
 Identities = 47/215 (21%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE-----NLDTLINLEILDLSFNR 114
            ++ +   W   +K  N    T++  L+L  N           +      ++ L LS + 
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 115 IR-------EIKGLDHLA-------NLEKLYLCSNKISKIENV--DHLKKLKVLELGDNK 158
                      K  D+          ++   L  +KI  +      H   L+ L L  N+
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 159 IRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEAL 212
           I  I++    GLT+L +L L +N +  ID+    +L KL +L L  N +R + +     L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 213 TNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYN 245
            NL +L L  N L ++ +        L+ + +  N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 25/158 (15%)

Query: 149 LKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRL 203
           +  ++L  N I  +       L +L+ L + +     +   +    L+ L IL L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 204 RTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE 261
             +E      L NL  L L++  L     +LS    +                 LT L+ 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLD--GAVLSGNFFK----------------PLTSLEM 133

Query: 262 FWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN 299
             + DN +      +   N ++   + L  N V     
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 7e-26
 Identities = 41/268 (15%), Positives = 94/268 (35%), Gaps = 40/268 (14%)

Query: 65  LLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIE----------NLDTLINLEILDLSFN 113
           +     + K+   +  L  ++ + +  N+    E          +      ++I+ + +N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 114 RIREI---KGLDHLANLEKLYLCSNKISK-IENVDHLKKLKVLELGDNKI-RIIENLDG- 167
            ++       L  +  L  L    N++   +       KL  L L  N+I  I  N  G 
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGF 375

Query: 168 LTNLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRTIEN---------LEALTNL 215
              +E L    NK+  I    +  S++ ++ +    N + +++               N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 216 TQLYLSENGLTT-IENLLSN-EKLETLDVAYNKIS---------IIQNIAHLTELQEFWI 264
           + + LS N ++   + L S    L ++++  N ++           +N  +   L    +
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             N+++  +          L  I L  N
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 6e-24
 Identities = 46/248 (18%), Positives = 92/248 (37%), Gaps = 40/248 (16%)

Query: 62  ERLLLRWNLIKKI---ENIHMLTTLKELELYDNQLTVIEN---------LDTLINLEILD 109
           E L    N +K I    +   ++ +  ++   N++  ++              IN+  ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 110 LSFNRIREI--KGLDHLANLEKLYLCSNKISKI---------ENVDHLKKLKVLELGDNK 158
           LS N+I +   +     + L  + L  N +++I         EN  +   L  ++L  NK
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 159 IRIIEN---LDGLTNLEELYLGKNKISRID----NLASLTKLNI---LSLQCNRLRTI-- 206
           +  + +      L  L  + L  N  S+      N ++L    I      Q NR      
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 207 ENLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKIS--IIQNIAHLTELQEFW 263
           E +    +LTQL +  N +  + E +  N  +  LD+  N      +  +    E   + 
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 264 INDNQVSD 271
           +  ++  D
Sbjct: 618 LFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 42/258 (16%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 63  RLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL 121
           ++    N I  + + +  LT L++  + ++     EN+      E  + +     E    
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKW 245

Query: 122 DHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIR----------IIENLDGLT 169
           D+L +L  + + +          +  L +++++ +  N+             + +     
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 170 NLEELYLGKNKISRI---DNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGL 225
            ++ +Y+G N +       +L  + KL +L    N+L   +    +   L  L L+ N +
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365

Query: 226 TTI-ENLLSN-EKLETLDVAYNKISII---QNIAHLTELQEFWINDNQVSDWNTVNV--- 277
           T I  N     E++E L  A+NK+  I    +   ++ +     + N++   +  N    
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 278 ---LENNKQLQTIYLDRN 292
                    + +I L  N
Sbjct: 426 DPTPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 26/203 (12%)

Query: 75  ENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREI---------KGLDH 123
                   +  + L +NQ++    E   T   L  ++L  N + EI         +   +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 124 LANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLG-- 177
              L  + L  NK++K+ +      L  L  ++L  N            + L+   +   
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

Query: 178 ----KNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--E 229
                N+  R   + +     L  L +  N +R +   +   N++ L + +N   +I   
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNISIDLS 605

Query: 230 NLLSNEKLETLDVAYNKISIIQN 252
            +    +     + Y+K   I+ 
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 39/243 (16%), Positives = 79/243 (32%), Gaps = 31/243 (12%)

Query: 77  IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR------EIKGLDHLANLE 128
           ++    +  L L     +    + +  L  LE+L L  +  +        KG+    + E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIR-------IIENLDGLTNLEELYLGKNKI 181
           +         K   VD+  +    +L  + I        I ++        ++    N I
Sbjct: 137 QKQKMRMHYQKTF-VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 182 SRI-DNLASLTKLNILSLQCNRLRTIENLEA--LTNLTQLYLSENGLTTIENLLSNEKLE 238
           + +   +  LTKL    +  +        EA    N       +      +NL   + L 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL---KDLT 252

Query: 239 TLDVAYNKI--SIIQNIAHLTELQEFWINDNQ-------VSDWNTVNVLENNKQLQTIYL 289
            ++V        +   +  L E+Q   +  N+         DW  +      +++Q IY+
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 290 DRN 292
             N
Sbjct: 313 GYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 12/141 (8%)

Query: 165 LDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSE 222
           L+    +  L L     S    D +  LT+L +L+L  +  +  E L     ++     E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 223 NGLTTIENLLSNE-----KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV-- 275
                  +          + +  D+  + I+       + +     + D Q+   +    
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 276 ---NVLENNKQLQTIYLDRNP 293
                +    +L+  Y+  +P
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 61  IERLLLRWNLIKKI-ENIHMLTTLKELELYDNQ-------LTVI-ENLDTLINLEILDLS 111
           +  + L +N   K        +TLK   + + +       L    E +    +L  L + 
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 112 FNRIREI-KGLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLDGL 168
            N IR++ + +    N+  L +  N    I    V    +  +  L  +K + I   D L
Sbjct: 575 SNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 5e-25
 Identities = 55/237 (23%), Positives = 95/237 (40%), Gaps = 22/237 (9%)

Query: 75  ENIHMLTTLKELELYDNQLTV---IENLDTLINLEILDLSFNRI-----REIKGLDHLAN 126
            ++   + LK L +  N L     +     L +LE+LDLS N I           D    
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 127 LEKLYLCSNKISKIENVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKIS-RI 184
           L+ L +  NKIS   +V     L+ L++  N     I  L   + L+ L +  NK+S   
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 185 -DNLASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-----TIENLLSNEKL 237
              +++ T+L +L++  N+    I     L +L  L L+EN  T      +        L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDT--L 296

Query: 238 ETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
             LD++ N     +       + L+   ++ N  S    ++ L   + L+ + L  N
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.1 bits (245), Expect = 6e-23
 Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 16/233 (6%)

Query: 76  NIHMLTTLKELELYDNQLT-VIENLDTLINLEILDLSFNR----IREIKGLDHLANLEKL 130
           ++  LT L+ L L ++ +   +       +L  LDLS N     +  +  L   + L+ L
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 131 YLCSNKIS---KIENVDHLKKLKVLELGDNKI-----RIIENLDGLTNLEELYLGKNKIS 182
            + SN +    K+     L  L+VL+L  N I           DG   L+ L +  NKIS
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 183 RIDNLASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-TIENLLSN-EKLET 239
              +++    L  L +  N     I  L   + L  L +S N L+      +S   +L+ 
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           L+++ N+         L  LQ   + +N+ +      +      L  + L  N
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.7 bits (239), Expect = 4e-22
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 31/237 (13%)

Query: 80  LTTLKELELYDNQLT-VIENLDTLINLEILDLSFNRIR-EI-KGLDHLANLEKLYLCSNK 136
              L+ L++  N  +  I  L     L+ LD+S N++  +  + +     L+ L + SN+
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 137 ISKIENVDHLKKLKVLELGDNKI--RIIENLDG-LTNLEELYLGKNKIS-RI-DNLASLT 191
                    LK L+ L L +NK    I + L G    L  L L  N     +     S +
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 192 KLNILSLQCNRLR---TIENLEALTNLTQLYLSENGLT-----TIENLLSNEKLETLDVA 243
            L  L+L  N       ++ L  +  L  L LS N  +     ++ NL ++  L TLD++
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTLDLS 376

Query: 244 YNKIS--IIQNIAH--LTELQEFWINDNQ----VSDWNTVNVLENNKQLQTIYLDRN 292
            N  S  I+ N+       LQE ++ +N     +        L N  +L +++L  N
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-----LSNCSELVSLHLSFN 428

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 29/231 (12%)

Query: 83  LKELELYDNQLTVIENLDTLINLEILDLSFNRIR-EIKGLDHLANLEKLYLCSN----KI 137
           L    L      V  +L +L  LE L LS + I   + G    A+L  L L  N     +
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPV 116

Query: 138 SKIENVDHLKKLKVLELGDNKIRI---IENLDGLTNLEELYLGKNKIS-----RIDNLAS 189
           + + ++     LK L +  N +     +     L +LE L L  N IS            
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 190 LTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-TIENLLSNEKLETLDVAYNKI 247
             +L  L++  N++   ++ +    NL  L +S N  +  I  L     L+ LD++ NK+
Sbjct: 177 CGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235

Query: 248 S--IIQNIAHLTELQEFWINDNQ----VSDWNTVNVLENNKQLQTIYLDRN 292
           S    + I+  TEL+   I+ NQ    +            K LQ + L  N
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL-------PLKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 6e-17
 Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 25/218 (11%)

Query: 75  ENIHMLTTLKELELYDNQLT-----VIENLDTLINLEILDLSFNRI-----REIKGLDHL 124
           + +  +  LK L+L  N+ +      + NL    +L  LDLS N         +   +  
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNL-CQNPK 393

Query: 125 ANLEKLYLCSNKIS-KI-ENVDHLKKLKVLELGDNKI--RIIENLDGLTNLEELYLGKNK 180
             L++LYL +N  + KI   + +  +L  L L  N +   I  +L  L+ L +L L  N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 181 IS-RI-DNLASLTKLNILSLQCNRLR-TI-ENLEALTNLTQLYLSENGLT-TIENLLSN- 234
           +   I   L  +  L  L L  N L   I   L   TNL  + LS N LT  I   +   
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 235 EKLETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVS 270
           E L  L ++ N  S  I   +     L    +N N  +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 43/213 (20%), Positives = 80/213 (37%), Gaps = 29/213 (13%)

Query: 101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS-KIENVDHLKKLKVLELGDN-- 157
           T I+L    L+         L  L  LE L+L ++ I+  +        L  L+L  N  
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 158 --KIRIIENLDGLTNLEELYLGKNKIS---RIDNLASLTKLNILSLQCNRL-----RTIE 207
              +  + +L   + L+ L +  N +    ++     L  L +L L  N +         
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 208 NLEALTNLTQLYLSENGLT---TIENLLSNEKLETLDVAYNKIS-IIQNIAHLTELQEFW 263
             +    L  L +S N ++    +   ++   LE LDV+ N  S  I  +   + LQ   
Sbjct: 173 LSDGCGELKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDCSALQHLD 229

Query: 264 INDNQVS----DWNTVNVLENNKQLQTIYLDRN 292
           I+ N++S           +    +L+ + +  N
Sbjct: 230 ISGNKLSGDFSRA-----ISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 9e-16
 Identities = 56/251 (22%), Positives = 89/251 (35%), Gaps = 39/251 (15%)

Query: 80  LTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIR-EI-KGLDHLANLEKLYLCSN 135
             TL+EL L +N  T  +   L     L  L LSFN +   I   L  L+ L  L L  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 136 KIS-KI-ENVDHLKKLKVLELGDNKI--RIIENLDGLTNLEELYLGKNKIS-RI-DNLAS 189
            +  +I + + ++K L+ L L  N +   I   L   TNL  + L  N+++  I   +  
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 190 LTKLNILSLQCNRLR-TI-ENLEALTNLTQLYLSENGLT-------------TIENLLSN 234
           L  L IL L  N     I   L    +L  L L+ N                   N ++ 
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572

Query: 235 E---------KLETLDVAYNKIS----IIQNIAHLTELQEFWINDNQVSDWNTVNVLENN 281
           +           +    A N +       + +  L+      I        +T    +NN
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNN 631

Query: 282 KQLQTIYLDRN 292
             +  + +  N
Sbjct: 632 GSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 38/225 (16%)

Query: 62  ERLLLRWNLIK-KI-ENIHMLTTLKELELYDNQLT-VI-ENLDTLINLEILDLSFNRI-- 115
             + L  N +  +I + I  L  L  L+L +N  +  I   L    +L  LDL+ N    
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 116 --------------------REIKGLDHLANLEKLYLCSNKISKI----ENVDHLKKLKV 151
                               +    + +    ++ +   N +       E ++ L     
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 152 LELGDNKI--RIIENLDGLTNLEELYLGKNKIS-RI-DNLASLTKLNILSLQCNRLR-TI 206
             +             D   ++  L +  N +S  I   + S+  L IL+L  N +  +I
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 207 -ENLEALTNLTQLYLSENGLT-TIENLLSN-EKLETLDVAYNKIS 248
            + +  L  L  L LS N L   I   +S    L  +D++ N +S
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  101 bits (254), Expect = 7e-25
 Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 22/221 (9%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQ-LTVIEN--LDTLINLEILDLS-FNR 114
              L      ++ I+         L+++E+  N  L VIE      L  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 115 IREI--KGLDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDN-KIRIIEN--LDG 167
           +  I  +   +L NL+ L + +  I  + +V   H  +  +L++ DN  I  IE     G
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 168 LT-NLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSE 222
           L+     L+L KN I  I N A        +     N L  + N      +    L +S 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211

Query: 223 NGLTTI-ENLLSN-EKLETLDVAYNKISIIQNIAHLTELQE 261
             + ++    L N +KL         +  +  +  L  L E
Sbjct: 212 TRIHSLPSYGLENLKKLRARS--TYNLKKLPTLEKLVALME 250

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 95.7 bits (238), Expect = 9e-23
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 29/253 (11%)

Query: 82  TLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKI- 137
           + +     ++++T I  +L    N   L     ++R I         +LEK+ +  N + 
Sbjct: 10  SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 138 SKIEN--VDHLKKLKVLEL-GDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SL 190
             IE     +L KL  + +   N +  I       L NL+ L +    I  + ++     
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 191 TKLNILSLQCN-RLRTIEN--LEALT-NLTQLYLSENGLTTIE----NLLSNEKLETLDV 242
            +  +L +Q N  + TIE      L+     L+L++NG+  I     N    ++L   D 
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD- 186

Query: 243 AYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN---PVAQD 297
             N +  + N      +      I+  ++        LEN K+L+          P  + 
Sbjct: 187 -NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLKKLPTLEK 244

Query: 298 PNYRRKIKLVCPW 310
                +  L  P 
Sbjct: 245 LVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.4 bits (227), Expect = 3e-21
 Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 25/232 (10%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG---LDHLANLEKLYLC-S 134
               EL     +L VI+        +LE +++S N + E+       +L  L ++ +  +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 135 NKISKIEN--VDHLKKLKVLELGDNKIRIIENL--DGLTNLEELYLGKN-KISRIDN--L 187
           N +  I      +L  L+ L + +  I+ + ++          L +  N  I  I+    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 188 ASLT-KLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI-ENLLSN-EKLETLDV 242
             L+ +  IL L  N ++ I N                N L  +  ++         LD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 243 AYNKISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +  +I  + +    +L +L+     + +      +  LE    L    L   
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 64  LLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFN-RIREI 118
            + + N +  I       L  L+ L + +  +  + ++     +   +LD+  N  I  I
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 119 KG---LDHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           +    +        L+L  N I +I N   +  +  ++    +N +  + N    G +  
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 172 EELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLS 221
             L + + +I  + +  L +L KL   S     L+ +  LE L  L +  L+
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLEKLVALMEASLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 1e-24
 Identities = 47/215 (21%), Positives = 102/215 (47%), Gaps = 19/215 (8%)

Query: 80  LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK 139
            + L +L ++ NQLT +  L     L+ L +S N++  +  L   + L KL+  +N+++ 
Sbjct: 120 PSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTS 175

Query: 140 IENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
           +        L+ L + DN++  +      + L +L+   N+++ +   A  + L  L + 
Sbjct: 176 LP--MLPSGLQELSVSDNQLASLP--TLPSELYKLWAYNNRLTSLP--ALPSGLKELIVS 229

Query: 200 CNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTE 258
            NRL ++  L   + L +L +S N LT++  L S   L +L V  N+++ + +++ HL+ 
Sbjct: 230 GNRLTSLPVL--PSELKELMVSGNRLTSLPMLPSG--LLSLSVYRNQLTRLPESLIHLSS 285

Query: 259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
                +  N +S+       +  +++ +      P
Sbjct: 286 ETTVNLEGNPLSERTL----QALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 1e-23
 Identities = 54/260 (20%), Positives = 109/260 (41%), Gaps = 34/260 (13%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIRE-I 118
           I  L++  N +  +  +     L+ LE+  NQLT +      L+ L I       +    
Sbjct: 63  ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 119 KGLDHL--------------ANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIEN 164
            GL  L                L++L +  N+++ +       +L  L   +N++  +  
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPM 178

Query: 165 LDGLTNLEELYLGKNKISRI-DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
           L   + L+EL +  N+++ +    + L KL   +   NRL ++  L   + L +L +S N
Sbjct: 179 L--PSGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLPAL--PSGLKELIVSGN 231

Query: 224 GLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ 283
            LT++  L S   L+ L V+ N+++ +      + L    +  NQ++       L +   
Sbjct: 232 RLTSLPVLPSE--LKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLP--ESLIHLSS 285

Query: 284 LQTIYLDRNPVAQDPNYRRK 303
             T+ L+ NP+++      +
Sbjct: 286 ETTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 2e-21
 Identities = 47/257 (18%), Positives = 104/257 (40%), Gaps = 26/257 (10%)

Query: 40  EESEAETTESKAEDEESKEVCIERLLLRWNL-IKKIENI--HMLTTLKELELYDNQLTVI 96
             + AE +  +A   +    C+       N+    +  +   +   +  L + DN LT +
Sbjct: 17  RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL 76

Query: 97  ENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155
             L     L  L++S N++  +      L  L         +  +        L  L + 
Sbjct: 77  PAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIF 129

Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
            N++  +  L     L+EL +  N+++ +   A  ++L  L    N+L ++  L   + L
Sbjct: 130 GNQLTSLPVL--PPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPML--PSGL 183

Query: 216 TQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV 275
            +L +S+N L ++  L S   L  L    N+++ +   A  + L+E  ++ N+++     
Sbjct: 184 QELSVSDNQLASLPTLPSE--LYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLT----- 234

Query: 276 NVLENNKQLQTIYLDRN 292
           ++     +L+ + +  N
Sbjct: 235 SLPVLPSELKELMVSGN 251

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 1e-20
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           ++ L +  N +  +    + + L +L  Y+NQLT +  L     L+ L +S N++  +  
Sbjct: 143 LQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPML--PSGLQELSVSDNQLASLP- 197

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
               + L KL+  +N+++ +        LK L +  N++  +  L   + L+EL +  N+
Sbjct: 198 -TLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNR 252

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
           ++ +  L   + L  LS+  N+L  + E+L  L++ T + L  N L+         ++ +
Sbjct: 253 LTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR-EITS 309

Query: 240 LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286
                  I I  ++A  +  +E        +DW              
Sbjct: 310 APGYSGPI-IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 168 LTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT 227
                 L +G++ ++ + +      +  L +  N L ++        L  L +S N LT+
Sbjct: 39  NNGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS 95

Query: 228 IENLLSN-EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT 286
           +  L     +L         +  +      + L + WI  NQ++      +      LQ 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTS-----LPVLPPGLQE 145

Query: 287 IYLDRNPVAQDPN 299
           + +  N +A  P 
Sbjct: 146 LSVSDNQLASLPA 158

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 94.7 bits (236), Expect = 4e-24
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 2/132 (1%)

Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
             + + +L + + + N  +     +    L  L     GLT+I NL    KL+ L+++ N
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 246 KISIIQNI--AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRK 303
           ++S    +       L    ++ N++ D +T+  L+  + L+++ L    V    +YR  
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134

Query: 304 IKLVCPWIVQID 315
           +  + P +  +D
Sbjct: 135 VFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 75.1 bits (185), Expect = 9e-17
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 80  LTTLKELELYDNQLTVIE---NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK 136
            + +KEL L +++    +     D    LE L      +  I  L  L  L+KL L  N+
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75

Query: 137 ISKIENV--DHLKKLKVLELGDNKIR---IIENLDGLTNLEELYLGKNKISRIDN 186
           +S    V  +    L  L L  NKI+    IE L  L NL+ L L   +++ +++
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 97  ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGD 156
                +  L + +   N  +     D    LE L   +  ++ I N+  L KLK LEL D
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73

Query: 157 NKIRIIENL--DGLTNLEELYLGKNKISR---IDNLASLTKLNILSLQCNRLRTIEN--- 208
           N++     +  +   NL  L L  NKI     I+ L  L  L  L L    +  + +   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133

Query: 209 --LEALTNLTQL 218
              + L  LT L
Sbjct: 134 NVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI 118
           +E L      +  I N+  L  LK+LEL DN+++    +  +   NL  L+LS N+I+++
Sbjct: 44  LEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 119 KGLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVL 152
             ++ L    NL+ L L + +++ + +        L +L  L
Sbjct: 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  100 bits (251), Expect = 7e-24
 Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 22/258 (8%)

Query: 57  KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-------TLINLEILD 109
             + +  +   WN   +I  +   TT+    + + +L    +         +L  L I  
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 110 LSFNRIREIKGL--DHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRII--E 163
           +  +     +    +  +N+       +    +  +    +     L+  +N +     E
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 164 NLDGLTNLEELYLGKNKISRIDNLAS----LTKLNILSLQCNRLRTIENLEA---LTNLT 216
           N   LT LE L L  N++  +  +A     +  L  L +  N +   E         +L 
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 217 QLYLSENGLTTIENLLSNEKLETLDVAYNKI-SIIQNIAHLTELQEFWINDNQVSDWNTV 275
            L +S N LT         +++ LD+  NKI SI + +  L  LQE  +  NQ+      
Sbjct: 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD- 461

Query: 276 NVLENNKQLQTIYLDRNP 293
            + +    LQ I+L  NP
Sbjct: 462 GIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.6 bits (230), Expect = 3e-21
 Identities = 38/246 (15%), Positives = 93/246 (37%), Gaps = 14/246 (5%)

Query: 14  NDNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK 73
             N     ++ V +T     S+ N   + + +  +        K + I +++       +
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 74  IENIHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI--KGLDHLANLEK 129
                + + +       +   ++  L    +     LD S N + +   +   HL  LE 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 130 LYLCSNKISKIENV----DHLKKLKVLELGDNKIRIIEN---LDGLTNLEELYLGKNKIS 182
           L L  N++ ++  +      +K L+ L++  N +   E         +L  L +  N ++
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 183 RIDNLASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLET 239
                    ++ +L L  N++++I + +  L  L +L ++ N L ++ +        L+ 
Sbjct: 413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 240 LDVAYN 245
           + +  N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 4e-19
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
                L +  N ++ +    + +L  L IL +S NRI+ +          LE L L  NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 137 ISKIENVDHLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKISRID--NLASLT 191
           + KI +      LK L+L  N    +   +    ++ L+ L L    + +     +A L 
Sbjct: 81  LVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT--TIENLLSNEKLETLDVAYNKISI 249
              +L +        E+ E L +     L     T      +L        ++  + I  
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 250 IQNIAHLTELQEF 262
           +      +     
Sbjct: 200 VLEDNKCSYFLSI 212

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 4e-17
 Identities = 43/248 (17%), Positives = 92/248 (37%), Gaps = 17/248 (6%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L +  N I ++    I  L+ L+ L +  N++  ++         LE LDLS N++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 117 EIKGLDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRII--ENLDGLTNL 171
           +I       NL+ L L  N    +   +   ++ +LK L L    +       +  L   
Sbjct: 83  KIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141

Query: 172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL 231
           + L +        ++   L   N  SL      T +    + +++   ++   L+ I+ +
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 232 LSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR 291
           L + K          +SI+  +    +L    +N+ + +  + + +L+        Y   
Sbjct: 201 LEDNKCSYF------LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 292 NPVAQDPN 299
           + V     
Sbjct: 255 SNVKLQGQ 262

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 13/185 (7%)

Query: 107 ILDLSFNRIREI-KGLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE 163
           ++D S N +  + K L        L +  N IS++    +  L KL++L +  N+I+ ++
Sbjct: 4   LVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 164 N--LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEA---LTNLTQL 218
                    LE L L  NK+ +I +      L  L L  N    +   +    ++ L  L
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKI-SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120

Query: 219 YLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVN 276
            LS   L       +      + L V        ++   L +     ++    ++     
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

Query: 277 VLENN 281
           +L+ +
Sbjct: 181 ILDVS 185

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 37/249 (14%), Positives = 81/249 (32%), Gaps = 27/249 (10%)

Query: 64  LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDH 123
             L  + IK +   +  +    +         + NL     L  ++ ++N    I  L  
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT----LNNIETTWNSFIRILQLVW 245

Query: 124 LANLEKLYLCSNKISKIENVDH-------LKKLKVLELGDNKIRIIENL--DGLTNLEEL 174
              +    + + K+    +          LK L + ++  +     ++   +  +N+   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 175 YLGKNKISRIDNLA--SLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIEN 230
               +    +  L    ++    L    N L     EN   LT L  L L  N L  +  
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 231 L----LSNEKLETLDVAYNKISIIQNIA---HLTELQEFWINDNQVSDWNTVNVLENNKQ 283
           +       + L+ LD++ N +S  +          L    ++ N ++D     +      
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--- 422

Query: 284 LQTIYLDRN 292
           ++ + L  N
Sbjct: 423 IKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 27/128 (21%)

Query: 169 TNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
                L + +N IS +    + SL+KL IL +  NR++ ++    +    L  L LS N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 225 LTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL 284
           L  I                       +      L+   ++ N            N  QL
Sbjct: 81  LVKI-----------------------SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 285 QTIYLDRN 292
           + + L   
Sbjct: 118 KFLGLSTT 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 11/131 (8%)

Query: 104 NLEILDLSFNRIREIK---GLDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNK 158
               L L+ N    ++       L  L K+   +NKI+ IE    +    +  + L  N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 159 IRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEAL 212
           +  +++    GL +L+ L L  N+I+ + N +   L+ + +LSL  N++ T+     + L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 213 TNLTQLYLSEN 223
            +L+ L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 125 ANLEKLYLCSNKISKIENV---DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
               +L L +N+ + +E       L +L+ +   +NKI  IE    +G + + E+ L  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 180 KISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTI 228
           ++  + +     L  L  L L+ NR+  + N     L+++  L L +N +TT+
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
            ++    N I  IE       + + E+ L  N+L  +++     L +L+ L L  NRI  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 118 IKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
           +       L+++  L L  N+I+ +     D L  L  L L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 52/155 (33%)

Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI 228
               EL L  N+ + ++      KL                     L ++  S N +T I
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKL-------------------PQLRKINFSNNKITDI 72

Query: 229 E-------------NLLSNE-------------KLETLDVAYNKISIIQNIA--HLTELQ 260
           E              L SN               L+TL +  N+I+ + N +   L+ ++
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132

Query: 261 EFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
              + DNQ++   TV     +    L T+ L  NP
Sbjct: 133 LLSLYDNQIT---TVAPGAFDTLHSLSTLNLLANP 164

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 93.3 bits (232), Expect = 3e-23
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 2/132 (1%)

Query: 186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN 245
             A++ +L + + + N  +         NL  L L   GL ++ NL    KL+ L+++ N
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 246 KISIIQNI--AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRK 303
           +I    ++    L  L    ++ N++ D +T+  L+  + L+++ L    V    +YR  
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141

Query: 304 IKLVCPWIVQID 315
           +  + P +  +D
Sbjct: 142 VFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 67  RWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLAN 126
           R +L  +      +  L       N   +       +NLE L L    +  +  L  L  
Sbjct: 13  RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK 72

Query: 127 LEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR---IIENLDGLTNLEELYLGKNKI 181
           L+KL L  N+I    +   + L  L  L L  NK++    +E L  L  L+ L L   ++
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

Query: 182 SRIDN-----LASLTKLNIL 196
           + +++        L +L  L
Sbjct: 133 TNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 113 NRIREIKGLDHLANLEKLYL--CSNKISKIENV-DHLKKLKVLELGDNKIRIIENLDGLT 169
            RI         A + +L L  C +   KIE +      L+ L L +  +  + NL  L 
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP 71

Query: 170 NLEELYLGKNKISRIDNL--ASLTKLNILSLQCNR---LRTIENLEALTNLTQLYLSENG 224
            L++L L +N+I    ++    L  L  L+L  N+   + T+E L+ L  L  L L    
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

Query: 225 LTTIEN 230
           +T + +
Sbjct: 132 VTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI 118
           +E L L    +  + N+  L  LK+LEL +N++    ++  + L NL  L+LS N++++I
Sbjct: 51  LEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 119 KGLDHLA---NLEKLYLCSNKISKIEN-----VDHLKKLKVLELGDNKIR 160
             L+ L     L+ L L + +++ + +        L +L  L+  D + +
Sbjct: 111 STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 1e-21
 Identities = 40/208 (19%), Positives = 84/208 (40%), Gaps = 21/208 (10%)

Query: 62  ERLLLRWNLIKKI-ENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLS-FNRIREI 118
           + + +    + ++ + +     L+ L L  N L  +  ++ +L  L  L +     + E+
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 119 ----------KGLDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIRII-ENLD 166
                          L NL+ L L    I  +  ++ +L+ LK L++ ++ +  +   + 
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226

Query: 167 GLTNLEELYL-GKNKISRI-DNLASLTKLNILSLQ-CNRLRTI-ENLEALTNLTQLYLSE 222
            L  LEEL L G   +            L  L L+ C+ L T+  ++  LT L +L L  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 223 N-GLTTIENLLSN-EKLETLDVAYNKIS 248
              L+ + +L++       + V  +  +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 20/208 (9%)

Query: 80  LTTLKELELYDNQL-TVIENLDTLINLEILDLSFNRIREI---KGLDHLANLEKLYLCSN 135
           L+  +     D              N +I   +   ++                L L S 
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91

Query: 136 KISKI-ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-DNLASLTK 192
            + +  +    L  L+ + +    +  + + +     LE L L +N +  +  ++ASL +
Sbjct: 92  PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151

Query: 193 LNILSLQ-CNRLRTI----------ENLEALTNLTQLYLSENGLTTIENLLSN-EKLETL 240
           L  LS++ C  L  +             + L NL  L L   G+ ++   ++N + L++L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 241 DVAYNKISII-QNIAHLTELQEFWINDN 267
            +  + +S +   I HL +L+E  +   
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 75  ENIHMLTTLKELELYD-NQLT-VIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYL 132
            + H  +  + L       L    + L         D   NR        +  N +    
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR--NRWHSAWRQANSNNPQIETR 63

Query: 133 CSNKISKIENV---DHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-DNL 187
               +    ++           LEL    +    +    L++L+ + +    +  + D +
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123

Query: 188 ASLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSE-NGLTTIENLLSN----------E 235
                L  L+L  N LR +  ++ +L  L +L +     LT +   L++           
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 236 KLETLDVAYNKISII-QNIAHLTELQEFWINDNQ 268
            L++L + +  I  +  +IA+L  L+   I ++ 
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 125 ANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
             + ++ L  N I  I        KKL+ ++L +N+I  +      GL +L  L L  NK
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSN 234
           I+ +       L  L +L L  N++  +     + L NL  L L +N L TI        
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 235 EKLETLDVAYN 245
             ++T+ +A N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 88.2 bits (219), Expect = 8e-21
 Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 28/151 (18%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
            T+ E+ L  N + VI          L  +DLS N+I E+       L +L  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90

Query: 137 ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLA--SLTKLN 194
                      K+  L             +GL +L+ L L  NKI+ +   A   L  LN
Sbjct: 91  -----------KITELPKSL--------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 195 ILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
           +LSL  N+L+TI       L  +  ++L++N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 10/128 (7%)

Query: 62  ERLLLRWNLIKKIENI--HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             + L  N IK I          L+ ++L +NQ++ +       L +L  L L  N+I E
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 118 IKG--LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNL 171
           +     + L +L+ L L +NKI+ +       L  L +L L DNK++ I       L  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 172 EELYLGKN 179
           + ++L +N
Sbjct: 155 QTMHLAQN 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 89.8 bits (223), Expect = 3e-21
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
              ++L+L    L  + +     L  L  L+L +N+++ +     D L  L  L L +N+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SL 190
           ++ +     DHL +L  L LG N+++ + +   D LT L+EL L  N++  I   A   L
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
           T L  LSL  N+L+++ +   + L  L  + L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.4 bits (178), Expect = 6e-15
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 15/156 (9%)

Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRT 205
           + L+L    +  + +    GLT L  L L  N++  +       LT+L  L L  N+L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 206 IENL--EALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQNIA--HLT 257
           +     + LT L +LYL  N L ++ +     L+   L+ L +  N++  I   A   LT
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK--LKELRLNTNQLQSIPAGAFDKLT 155

Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
            LQ   ++ NQ+         +   +LQTI L  N 
Sbjct: 156 NLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 8/108 (7%)

Query: 80  LTTLKELELYDNQLTVIENL--DTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSN 135
           LT L  L L +NQL  +     D L  L+ L L  N+++ +  G+ D L  L++L L +N
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 136 KISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
           ++  I     D L  L+ L L  N+++ + +   D L  L+ + L  N
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
             L L  N +  +       LT L +L L  NQL  + +   D L  L+ L L+ N+++ 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145

Query: 118 I-KGL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
           I  G  D L NL+ L L +N++  + +   D L KL+ + L  N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.6 bits (230), Expect = 4e-21
 Identities = 50/254 (19%), Positives = 86/254 (33%), Gaps = 22/254 (8%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-------TLINLEILDLSFN 113
           ++ +   W    K+        ++ L +Y+  +T   + +        L +L I  +   
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 114 RIREIKGL--DHLANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIE--NLDG 167
                K       A +    L  +    I  V          L    N            
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 168 LTNLEELYLGKNKISRI----DNLASLTKLNILSLQCNRLRTIEN---LEALTNLTQLYL 220
           L  L+ L L +N +           +++ L  L +  N L +           ++  L L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 221 SENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTELQEFWINDNQVSDWNTVNVLE 279
           S N LT         K++ LD+  N+I  I +++ HL  LQE  +  NQ+       V +
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV-PDGVFD 494

Query: 280 NNKQLQTIYLDRNP 293
               LQ I+L  NP
Sbjct: 495 RLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 23/232 (9%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK 136
              K L L  N ++ +    +  L  L +L LS NRIR +         +LE L +  N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 137 ISKIENVDHLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKISRID--NLASLT 191
           +  I +   +  L+ L+L  N   ++   +    LT L  L L   K  ++D   +A L 
Sbjct: 112 LQNI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 192 ----KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
                L+++S       T       T +  L    N L +++  +S   L  L ++  K+
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 248 ---------SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD 290
                    + +  +     L    +   + +   +V + +        YL+
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 49/265 (18%), Positives = 97/265 (36%), Gaps = 31/265 (11%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
            + L L  N I ++    I  L+ L+ L L  N++  ++        +LE LD+S NR++
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 117 EIKGLDHLANLEKLYLCSNKISKI---ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEE 173
            I     +A+L  L L  N    +   +   +L KL  L L   K R + +L  + +L  
Sbjct: 114 NIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHL 171

Query: 174 ----LYLGKNKISRIDNLA---SLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
               L L    I   +  +     T +  L    N L +++   ++  L  L LS   L 
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 227 TIEN--------------LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD- 271
                              L N  L+ ++  +     +        ++   I +  +++ 
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 272 WNTVNVLENNKQLQTIYLDRNPVAQ 296
            +      +   L+++ ++      
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQV 316

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAYNK 246
            +   LSL  N +  +    +  L+ L  L LS N + +++  +   N+ LE LDV++N+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 247 ISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           +  I     +  L+   ++ N            N  +L  + L   
Sbjct: 112 LQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.4 bits (212), Expect = 9e-20
 Identities = 38/210 (18%), Positives = 87/210 (41%), Gaps = 22/210 (10%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN-KI 137
              ++  +    +  I +L    + + L L    +R I      +L N+ ++Y+  +  +
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 138 SKIENV--DHLKKLKVLELGDNK-IRIIEN--LDGLTNLEELYLGKNKISRIDN---LAS 189
            ++E+    +L K+  +E+ + + +  I+   L  L  L+ L +    +    +   + S
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 190 LTKLNILSLQCN-RLRTIEN--LEALTNLTQ-LYLSENGLTTIE-NLLSNEKLETLDVAY 244
                IL +  N  + +I     + L N T  L L  NG T+++    +  KL+ + +  
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188

Query: 245 NK-ISIIQNIA---HLTELQEFWINDNQVS 270
           NK +++I   A     +      ++   V+
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDN-QLTVIEN--LDTLINLEILDLSFNR- 114
            + L L    ++ I +     L  +  + +  +  L  +E+     L  +  +++   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 115 IREIKG--LDHLANLEKLYLCSNKISKIEN---VDHLKKLKVLELGDN-KIRIIEN--LD 166
           +  I    L  L  L+ L + +  +    +   V       +LE+ DN  +  I      
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 167 GLTN-LEELYLGKNKISRIDNLA-SLTKLNILSLQCNR-LRTIEN---LEALTNLTQLYL 220
           GL N    L L  N  + +   A + TKL+ + L  N+ L  I+        +  + L +
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 221 SENGLTTI 228
           S+  +T +
Sbjct: 213 SQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 36/206 (17%), Positives = 84/206 (40%), Gaps = 26/206 (12%)

Query: 79  MLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFN-RIREIKG--LDHLANLEKLYLC 133
           +  + + L+L +  L  I +     L N+  + +S +  +++++     +L+ +  + + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 134 SNK-ISKIENV--DHLKKLKVLELGDNKIRIIEN---LDGLTNLEELYLGKN-KISRIDN 186
           + + ++ I+      L  LK L + +  +++  +   +        L +  N  ++ I  
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 187 --LASLTK-LNILSLQCNRLRTIE-NLEALTNLTQLYLSEN-GLTTIE-----NLLSNEK 236
                L      L L  N   +++      T L  +YL++N  LT I+      + S   
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG-- 206

Query: 237 LETLDVAYNKISIIQNIA--HLTELQ 260
              LDV+   ++ + +    HL EL 
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 80  LTTLKELELYDNQLTVIEN---LDTLINLEILDLSFN-RIREIKG--LDHLAN-LEKLYL 132
           L  LK L +++  L +  +   + +     IL+++ N  +  I       L N    L L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 133 CSNKISKIE-NVDHLKKLKVLELGDNK-IRIIEN--LDGL-TNLEELYLGKNKISRI--D 185
            +N  + ++    +  KL  + L  NK + +I+     G+ +    L + +  ++ +   
Sbjct: 164 YNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223

Query: 186 NLASLTKLNILSL 198
            L  L +L   + 
Sbjct: 224 GLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 169 TNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG-L 225
              E+  +    I RI +L        L L    LRTI +     L N++++Y+S +  L
Sbjct: 11  HQEEDFRVTCKDIQRIPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 226 TTIEN--LLSNEKLETLDVAYNK-ISIIQNIA--HLTELQEFWINDNQVSDWNTVNVLEN 280
             +E+    +  K+  +++   + ++ I   A   L  L+   I +  +  +  +  + +
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 281 NKQLQTIYLDRNP 293
                 + +  NP
Sbjct: 129 TDIFFILEITDNP 141

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.9 bits (215), Expect = 4e-19
 Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 20/227 (8%)

Query: 80  LTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNKIS 138
                      N+   +     +     L L+   +  +   L     +  L +  N + 
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI 93

Query: 139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSL 198
            +   +    L+ L+  DN++  +  L    +L+ L +  N+++ +  L     L  ++ 
Sbjct: 94  SLP--ELPASLEYLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPEL--PALLEYINA 147

Query: 199 QCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI-----SIIQNI 253
             N+L  +   E  T+L  L +  N LT +  L  +  LE LDV+ N +       ++N 
Sbjct: 148 DNNQLTML--PELPTSLEVLSVRNNQLTFLPELPES--LEALDVSTNLLESLPAVPVRNH 203

Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
                   F   +N+++       + +     TI L+ NP++     
Sbjct: 204 HSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLSSRIRE 248

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 187 LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYN 245
                K  +     N   ++     +   ++L L+   L+++ +NL     +  L++  N
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQN 90

Query: 246 KISII-QNIAHLTEL 259
            +  + +  A L  L
Sbjct: 91  ALISLPELPASLEYL 105

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.8 bits (203), Expect = 6e-18
 Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 21/189 (11%)

Query: 77  IHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIR-EI-KGLDHLANLEKLYL 132
           I  LT L  L +    ++  + + L  +  L  LD S+N +   +   +  L NL  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 133 CSNKIS-KI-ENVDHLKKL-KVLELGDNKI-----RIIENLDGLTNLEELYLGKNKIS-R 183
             N+IS  I ++     KL   + +  N++         NL    NL  + L +N +   
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----NLAFVDLSRNMLEGD 212

Query: 184 I-DNLASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLT-TIENLLSN-EKLET 239
                 S      + L  N L   +  +    NL  L L  N +  T+   L+  + L +
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 240 LDVAYNKIS 248
           L+V++N + 
Sbjct: 273 LNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 18/187 (9%)

Query: 75  ENIHMLTTLKELELYDNQLT-VI-ENLDTLINLEILDLSFNRI-----REIKGLDHLANL 127
           + +  + TL  L+   N L+  +  ++ +L NL  +    NRI             L   
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL--F 176

Query: 128 EKLYLCSNKIS-KI-ENVDHLKKLKVLELGDNKI--RIIENLDGLTNLEELYLGKNKIS- 182
             + +  N+++ KI     +L  L  ++L  N +            N ++++L KN ++ 
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 183 RIDNLASLTKLNILSLQCNRLR-TI-ENLEALTNLTQLYLSENGLT-TIENLLSNEKLET 239
            +  +     LN L L+ NR+  T+ + L  L  L  L +S N L   I    + ++ + 
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

Query: 240 LDVAYNK 246
              A NK
Sbjct: 296 SAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 14/140 (10%)

Query: 145 HLKKLKVLELGDNKIR----IIENLDGLTNLEELYL-GKNKIS-RI-DNLASLTKLNILS 197
              ++  L+L    +     I  +L  L  L  LY+ G N +   I   +A LT+L+ L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 198 LQCNRLR-TI-ENLEALTNLTQLYLSENGLT-TIENLLSN-EKLETLDVAYNKIS--IIQ 251
           +    +   I + L  +  L  L  S N L+ T+   +S+   L  +    N+IS  I  
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 252 NIAHLTELQEF-WINDNQVS 270
           +    ++L     I+ N+++
Sbjct: 168 SYGSFSKLFTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 24/124 (19%)

Query: 185 DNLASLTKLNILSLQCNRLR---TI-ENLEALTNLTQLYLS-ENGLT-----TIENLLSN 234
           D      ++N L L    L     I  +L  L  L  LY+   N L       I  L   
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL--- 100

Query: 235 EKLETLDVAYNKIS--IIQNIAHLTELQEFWINDNQVS----DWNTVNVLENNKQLQTIY 288
            +L  L + +  +S  I   ++ +  L     + N +S           + +   L  I 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-----ISSLPNLVGIT 155

Query: 289 LDRN 292
            D N
Sbjct: 156 FDGN 159

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 52/283 (18%), Positives = 92/283 (32%), Gaps = 27/283 (9%)

Query: 15  DNLVTLNVEAVENTHGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI 74
           + L   +VE        +  L   D E++        +    K + +    +   ++   
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 75  ENIHMLTTLKELELYDNQLT--VIENLDTLINLEILDLSFNRIREIKGLDHLA------- 125
             +  ++ L+EL L + ++T      L      ++  L+   +        LA       
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 126 -NLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENL------DGLTNLEELYL 176
             L+ L +          E V     L  L+L DN       L           L+ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 177 GKNKISRIDN-----LASLTKLNILSLQCNRLRTIENLEA---LTNLTQLYLSENGLTTI 228
               +           A+  +L  L L  N LR      +    + L  L LS  GL  +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 229 ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD 271
              L   KL  LD++YN++    +   L ++    +  N   D
Sbjct: 269 PKGLP-AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 37/168 (22%), Positives = 58/168 (34%), Gaps = 17/168 (10%)

Query: 78  HMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDH------LANLEK 129
            +   LK L +          E +     L  LDLS N     +GL           L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 130 LYLCSNKISKIENVD-----HLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKI 181
           L L +  +     V         +L+ L+L  N +R      + D  + L  L L    +
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 182 SRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE 229
            ++       KL++L L  NRL    + + L  +  L L  N     E
Sbjct: 266 KQVPK-GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 125 ANLEKLYLCSNKISKIENV---DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
            +  +L L  N++ +I +      L  L  LEL  N++  IE    +G ++++EL LG+N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 180 KISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSEN 223
           KI  I N     L +L  L+L  N++  +     E L +LT L L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 12/104 (11%)

Query: 106 EILDLSFNRIREIKG---LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIR 160
             L L+ N +  I        L +L KL L  N+++ IE    +    ++ L+LG+NKI+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 161 IIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILS 197
            I N    GL  L+ L L  N+IS +     ++L SLT LN+ S
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 62  ERLLLRWNLIKKIENI---HMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
             LLL  N + +I +      L  L +LEL  NQLT IE    +   +++ L L  N+I+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 117 EI-KGL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
           EI   +   L  L+ L L  N+IS +     +HL  L  L L  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 195 ILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIENLL--SNEKLETLDVAYNKISI 249
            L L  N L  I +      L +L +L L  N LT IE         ++ L +  NKI  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 250 IQNIA--HLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDRNP 293
           I N     L +L+   + DNQ+S    V     E+   L ++ L  NP
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQIS---CVMPGSFEHLNSLTSLNLASNP 137

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 12/125 (9%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSNK 136
           T  + L L+DNQ+T +E    D+LINL+ L L  N++  +  G+ D L  L  L L +N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI-----DNLA 188
           ++ + +   D L  LK L +  NK+  +   ++ LT+L  L L +N++  I     D L+
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 189 SLTKL 193
           SLT  
Sbjct: 160 SLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 28/150 (18%)

Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRT 205
           ++L L DN+I  +E    D L NL+ELYLG N++  +      SLT+L +L L  N+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 206 IEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFW 263
           + +   + L +L +L++  N LT                      + + I  LT L    
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT---------------------ELPRGIERLTHLTHLA 141

Query: 264 INDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
           ++ NQ+         +    L   YL  NP
Sbjct: 142 LDQNQLKSIPH-GAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGLDHLANLEKLYLCSNK 136
           LT L  L+L  NQLTV+ +   D L++L+ L +  N++ E+ +G++ L +L  L L  N+
Sbjct: 87  LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146

Query: 137 ISKIENV--DHLKKLKVLELGDN 157
           +  I +   D L  L    L  N
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 71.2 bits (175), Expect = 6e-15
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 13/126 (10%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSNK 136
                L+L  N L  + N   D L +L  L L  N+++ +  G+ + L +L  L L +N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNL 187
           +  + N   D L +LK L L  N+++ + +   D LT L++L L +N++  +     D L
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

Query: 188 ASLTKL 193
            SL  +
Sbjct: 148 TSLQYI 153

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 53/177 (29%)

Query: 125 ANLEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNK 180
           A    L L +N +  + N   D L  L  L LG NK++ + N   + LT+L  L L  N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 181 ISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEK 236
           +  + N     LT+L  L+L  N+L+++ +   + LT L  L L +N L ++ +      
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------ 141

Query: 237 LETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
                                                   V +    LQ I+L  NP
Sbjct: 142 ---------------------------------------GVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 80  LTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI-KGL-DHLANLEKLYLCSN 135
           LT+L  L L  NQL  + N   D L  L+ L L+ N+++ +  G+ D L  L+ L L  N
Sbjct: 75  LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134

Query: 136 KISKIEN--VDHLKKLKVLELGDN 157
           ++  + +   D L  L+ + L DN
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDN 158

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 106 EILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDNKIRII 162
             L L  N+   +   L +  +L  + L +N+IS + N    ++ +L  L L  N++R I
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 163 EN--LDGLTNLEELYLGKNKISRI-----DNLASLTKL 193
                DGL +L  L L  N IS +     ++L++L+ L
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 28/130 (21%)

Query: 169 TNLEELYLGKNKISRIDN-LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGL 225
            ++ ELYL  N+ + +   L++   L ++ L  NR+ T+ N     +T L  L LS N L
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 226 TTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV--NVLENNKQ 283
             I               ++          L  L+   ++ N +S    V      +   
Sbjct: 91  RCIPPR-----------TFDG---------LKSLRLLSLHGNDIS---VVPEGAFNDLSA 127

Query: 284 LQTIYLDRNP 293
           L  + +  NP
Sbjct: 128 LSHLAIGANP 137

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 63  RLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI 118
            + L  N I  + N     +T L  L L  N+L  I     D L +L +L L  N I  +
Sbjct: 58  LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

Query: 119 -KGL-DHLANLEKLYLCSN 135
            +G  + L+ L  L + +N
Sbjct: 118 PEGAFNDLSALSHLAIGAN 136

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 7e-14
 Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 72/284 (25%)

Query: 81  TTLKELELYDNQLTVIEN------------LDTLINLEILDLSFNRIREI------KGLD 122
             L+  E  D     +++            L     L  + LS N             L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 123 HLANLEKLYLCSNKIS---------------KIENVDHLKKLKVLELGDNKIR------I 161
               LE LYL +N +                  +   +   L+ +  G N++        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 162 IENLDGLTNLEELYLGKNKISRI-------DNLASLTKLNILSLQCNRLRTI------EN 208
            +       L  + + +N I          + LA   +L +L LQ N    +        
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 209 LEALTNLTQLYLSENGLTTIE--------NLLSNEKLETLDVAYNKISI--IQNIA---- 254
           L++  NL +L L++  L+           + L N  L+TL + YN+I +  ++ +     
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 255 -HLTELQEFWINDNQVSDWNTV-----NVLENNKQLQTIYLDRN 292
             + +L    +N N+ S+ + V      V     + +   LD  
Sbjct: 300 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 53/259 (20%)

Query: 82  TLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREI------KGLDHLANLEK 129
           +++   L  + +T      V   L    +++ + LS N I         + +    +LE 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 130 LYLCSNKISKIENVD------------HLKKLKVLELGDNKIR------IIENLDGLTNL 171
                    ++++                 KL  + L DN         +I+ L   T L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--- 228
           E LYL  N +       +      ++     L   +  +    L  +    N L      
Sbjct: 125 EHLYLHNNGLG--PQAGA-----KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 229 ---ENLLSNEKLETLDVAYNKIS-------IIQNIAHLTELQEFWINDNQVSD---WNTV 275
              +   S+  L T+ +  N I        +++ +A+  EL+   + DN  +        
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 276 NVLENNKQLQTIYLDRNPV 294
             L++   L+ + L+   +
Sbjct: 238 IALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 49/310 (15%), Positives = 91/310 (29%), Gaps = 80/310 (25%)

Query: 61  IERLLLRWNLIKK------IENIHMLTTLKELELYDNQLTVI------ENLDTLINLEIL 108
           IE   L+ + I           +    ++KE+ L  N +         EN+ +  +LEI 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 109 DLSFNRIREI------------KGLDHLANLEKLYLCSNKISKI------ENVDHLKKLK 150
           + S      +            + L     L  + L  N           + +     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 151 VLELGDNKI---------------RIIENLDGLTNLEELYLGKNKISRI------DNLAS 189
            L L +N +                + +       L  +  G+N++             S
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 190 LTKLNILSLQCNRLRTI-------ENLEALTNLTQLYLSENGLTTI------ENLLSNEK 236
              L+ + +  N +R         E L     L  L L +N  T +        L S   
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 237 LETLDVAYNKI---------SIIQNIAHLTELQEFWINDNQVSDWNTVNVL-----ENNK 282
           L  L +    +              + ++  LQ   +  N++   + V  L     E   
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIEL-DAVRTLKTVIDEKMP 303

Query: 283 QLQTIYLDRN 292
            L  + L+ N
Sbjct: 304 DLLFLELNGN 313

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 51/273 (18%), Positives = 95/273 (34%), Gaps = 57/273 (20%)

Query: 77  IHMLTTLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREIKGLDHLA----- 125
           + +L   + + L D  LT      +   L     L  L+L  N + +  G+  +      
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQT 82

Query: 126 ---NLEKLYLCSNKISKI------ENVDHLKKLKVLELGDNKI-----RIIEN--LDGLT 169
               ++KL L +  ++          +  L  L+ L L DN +     +++    LD   
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 170 NLEELYLGKNKISRIDN------LASLTKLNILSLQCNRL--RTIENL-EAL----TNLT 216
            LE+L L    +S          L +      L++  N +    +  L + L      L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 217 QLYLSENGLTT------IENLLSNEKLETLDVAYNKIS------IIQNIAH-LTELQEFW 263
            L L   G+T+         + S   L  L +  NK+       +   + H  + L+  W
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 264 INDNQVSDWNTV---NVLENNKQLQTIYLDRNP 293
           I +  ++         VL   + L+ + L  N 
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 53/269 (19%), Positives = 93/269 (34%), Gaps = 58/269 (21%)

Query: 81  TTLKELELYDNQLTVIE-------NLDTLINLEILDLSFNRIREI------KGLDHLANL 127
            TL+EL L DN L            LD    LE L L +  +           L    + 
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 128 EKLYLCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGLTNLEE 173
           ++L + +N I++   V  L         +L+ L+L    +       +   +    +L E
Sbjct: 173 KELTVSNNDINE-AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 174 LYLGKNKISRID-------NLASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYL 220
           L LG NK+  +         L   ++L  L +    +           L A  +L +L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 221 SEN-----GLTTIENLL--SNEKLETLDVAYNKIS------IIQNIAHLTELQEFWINDN 267
           + N     G   +   L     +LE+L V     +          +A    L E  I++N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 268 QVSDWNTVNVLE----NNKQLQTIYLDRN 292
           ++ D     + +        L+ ++L   
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADC 380

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 54/265 (20%)

Query: 81  TTLKELELYDNQLT---VIENLDTLINLEILDLSFNRIREI------KGLDHLANLEKLY 131
             ++ L++   +L+     E L  L   +++ L    + E         L     L +L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 132 LCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGLTNLEELYLG 177
           L SN++     V  +         K++ L L +  +       +   L  L  L+EL+L 
Sbjct: 63  LRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 178 KNKISRID-------NLASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYLSEN- 223
            N +            L    +L  L L+   L           L A  +  +L +S N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 224 ----GLTTIENLL--SNEKLETLDVAYNKIS------IIQNIAHLTELQEFWINDNQVSD 271
               G+  +   L  S  +LE L +    ++      +   +A    L+E  +  N++ D
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 272 WNTVN----VLENNKQLQTIYLDRN 292
                    +L  + +L+T+++   
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWEC 266

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 58/269 (21%)

Query: 81  TTLKELELYDNQL--TVIENL-----DTLINLEILDLSFNRIRE------IKGLDHLANL 127
              KEL + +N +    +  L     D+   LE L L    +           +   A+L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 128 EKLYLCSNKISKIENVDHL--------KKLKVLELGDNKI------RIIENLDGLTNLEE 173
            +L L SNK+     +  L         +L+ L + +  I       +   L    +L+E
Sbjct: 230 RELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 174 LYLGKNKI--SRIDNLASL-----TKLNILSLQCNRLRTI------ENLEALTNLTQLYL 220
           L L  N++       L         +L  L ++               L     L +L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348

Query: 221 SEN-----GLTTIENLL--SNEKLETLDVAYNKIS------IIQNIAHLTELQEFWINDN 267
           S N     G+  +   L      L  L +A   +S      +   +     L+E  +++N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

Query: 268 QVSDWNTVNVLE----NNKQLQTIYLDRN 292
            + D   + ++E        L+ + L   
Sbjct: 409 CLGDAGILQLVESVRQPGCLLEQLVLYDI 437

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 78  HMLTTLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREIKGLDHLA------ 125
                L+ L +     T          L     L  L +S NR+ +  G+  L       
Sbjct: 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQP 368

Query: 126 --NLEKLYLCSNKISKI------ENVDHLKKLKVLELGDNKI------RIIENL-DGLTN 170
              L  L+L    +S          +     L+ L+L +N +      +++E++      
Sbjct: 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 428

Query: 171 LEELYLGKNKISR--IDNLASLTKLN 194
           LE+L L     S    D L +L K  
Sbjct: 429 LEQLVLYDIYWSEEMEDRLQALEKDK 454

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 9e-12
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 150 KVLELGDNKIRIIENLDGLTNLEELYL-GKNKISRIDN--LASLTKLNILSLQCNRLRTI 206
            +    D  +  + +L G  NL ELY+  +  +  ++   L  L +L  L++  + LR +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 207 EN--LEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYN 245
                     L++L LS N L ++    +    L+ L ++ N
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.9 bits (147), Expect = 9e-11
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 133 CSNK--ISKIENVDHLKKLKVLEL-GDNKIRIIEN--LDGLTNLEELYLGKNKISRIDNL 187
           C+    +  + ++   + L  L +     ++ +E   L GL  L  L + K+ +  +   
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 188 A--SLTKLNILSLQCNRLRTI-ENLEALTNLTQLYLSENGLT 226
           A     +L+ L+L  N L ++        +L +L LS N L 
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 66  LRWNLIKKIENIHMLTTLKELELYDNQ-LTVIEN--LDTLINLEILDLSFNRIREI--KG 120
            R   +  + ++     L EL + + Q L  +E   L  L  L  L +  + +R +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 121 LDHLANLEKLYLCSNKISKI-ENVDHLKKLKVLELGDNKIR 160
                 L +L L  N +  +         L+ L L  N + 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 88  LYDNQLTVIENLDTLINLEILDLSFNR-IREIKG--LDHLANLEKLYLCSNKISKIEN-- 142
             D  L  + +L    NL  L +   + ++ ++   L  L  L  L +  + +  +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 143 VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
                +L  L L  N +  +    + GL +L+EL L  N
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 197 SLQCNRLRTIENLEA---LTNLTQLYLSEN-GLTTIEN-LLSN-EKLETLDVAYNKISII 250
            L+C R   +++L       NLT+LY+     L  +E   L    +L  L +  + +  +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 251 QNIA--HLTELQEFWINDNQVS--DWNTVNVLENNKQLQTIYLDRNPVAQD 297
              A      L    ++ N +    W TV  L     LQ + L  NP+   
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 65  LLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG 120
           +     ++ +E   +  L  L+ L +  + L  +          L  L+LSFN +  +  
Sbjct: 38  IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97

Query: 121 --LDHLANLEKLYLCSN 135
             +  L +L++L L  N
Sbjct: 98  KTVQGL-SLQELVLSGN 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 29/122 (23%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI 140
           ++   LEL  N+L  + +                       D L  L KL L  N+I  +
Sbjct: 28  SSATRLELESNKLQSLPH--------------------GVFDKLTQLTKLSLSQNQIQSL 67

Query: 141 EN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLT 191
            +   D L KL +L L +NK++ + N   D LT L+EL L  N++  +     D L SL 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127

Query: 192 KL 193
           K+
Sbjct: 128 KI 129

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
            RL L  N ++ + +     LT L +L L  NQ+  + +   D L  L IL L  N+++ 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 118 I-KGL-DHLANLEKLYLCSNKISKIEN--VDHLKKLKVLELGDN 157
           +  G+ D L  L++L L +N++  + +   D L  L+ + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRT 205
             LEL  NK++ + +   D LT L +L L +N+I  + +     LTKL IL L  N+L++
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 206 IEN--LEALTNLTQLYLSENGLTTI 228
           + N   + LT L +L L  N L ++
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSV 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 31/132 (23%)

Query: 169 TNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
           ++   L L  NK+  + +     LT+L  LSL  N+++++ +   + LT LT LYL EN 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 225 LTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENN 281
           L ++ N             ++K         LT+L+E  ++ NQ   V D     + +  
Sbjct: 88  LQSLPN-----------GVFDK---------LTQLKELALDTNQLKSVPD----GIFDRL 123

Query: 282 KQLQTIYLDRNP 293
             LQ I+L  NP
Sbjct: 124 TSLQKIWLHTNP 135

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 52/276 (18%), Positives = 94/276 (34%), Gaps = 67/276 (24%)

Query: 81  TTLKELELYDNQLT------VIENL-DTLINLEILDLSFNRIREIKGLDHLA-------- 125
             +  L+L  N L       +I+   +T  ++  L+LS N +   K  D L         
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPA 80

Query: 126 NLEKLYLCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGL-TN 170
           N+  L L  N +S  ++ D L          + VL+LG N           +    L  +
Sbjct: 81  NVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 171 LEELYLGKNKISR--IDNLASL-----TKLNILSLQCNRLRTIENLEAL--------TNL 215
           +  L L  N +     D L  +       +N L+L+ N L   +N   L         ++
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASV 198

Query: 216 TQLYLSENGLTT------IENLLSN-EKLETLDVAYNKIS------IIQNIAHLTELQEF 262
           T L LS N L             S    + +L++  N +       +      L  LQ  
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 263 WINDNQVSD------WNTVNVLENNKQLQTIYLDRN 292
           +++ + V +              N +++  +  +  
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 58/222 (26%)

Query: 81  TTLKELELYDNQLT---------VIENLDTLINLEILDLSFNRIREIKGLDHLA------ 125
             +  L L  N L+          +  +     + +LDL +N     K            
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPF--TITVLDLGWNDFSS-KSSSEFKQAFSNL 136

Query: 126 --NLEKLYLCSNKISKIENVDHL--------KKLKVLELGDNKIR------IIENLDGL- 168
             ++  L L  N +   ++ D L          +  L L  N +       + + L  + 
Sbjct: 137 PASITSLNLRGNDLGI-KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 169 TNLEELYLGKNKISR--IDNLASL-----TKLNILSLQCNRLRT------IENLEALTNL 215
            ++  L L  N +       LA +       +  L+L  N L            ++L +L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 216 TQLYLSENGLTTI---------ENLLSNEKLETLDVAYNKIS 248
             +YL  + +  +             + +K+  +D    +I 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 37/199 (18%)

Query: 81  TTLKELELYDNQLT---------VIENLDTLINLEILDLSFNRIREIKGLDHLA------ 125
             +  L L  N L           + ++    ++  LDLS N +   K    LA      
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLLGL-KSYAELAYIFSSI 223

Query: 126 --NLEKLYLCSNKISK------IENVDHLKKLKVLELGDNKIR---------IIENLDGL 168
             ++  L LC N +            D LK L+ + L  + ++         +      +
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 169 TNLEELYLGKNKISR--IDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT 226
             +  +     +I       +++L +          L     + A  + T +        
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 227 TIENLLSNEKLETLDVAYN 245
             E++ + + L      ++
Sbjct: 344 LRESIQTCKPLLEHHHHHH 362

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 55/255 (21%)

Query: 79  MLTTLKELELYDNQLTVIEN-------LDTLINLEILDLSFNRIREIKG---LDHLANLE 128
           +L++L++L L   ++T ++              L+ ++L+  ++        L       
Sbjct: 70  VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 129 KLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI---- 184
           KL L  N +   E    L+ L    L  ++            +  L L  N ++      
Sbjct: 130 KLGLQLNSLGP-EACKDLRDL----LLHDQ----------CQITTLRLSNNPLTAAGVAV 174

Query: 185 --DNLASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYLSENGLTTI------EN 230
             + LA  T +  LSL    L           L+    L +L ++ NG            
Sbjct: 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234

Query: 231 LLSNEKLETLDVAYNKIS---------IIQNIAHLTELQEFWINDNQVSDWNTV---NVL 278
              +  LE L + +N++S         +         +         VS++ +V    V 
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

Query: 279 ENNKQLQTIYLDRNP 293
            N        + R+ 
Sbjct: 295 RNLNSWDRARVQRHL 309

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 36/182 (19%), Positives = 60/182 (32%), Gaps = 34/182 (18%)

Query: 146 LKKLKVLELGDNKIR------IIENL-DGLTNLEELYLGKNKIS---RIDNLASLTKLNI 195
           L  L+ L L   ++       +   L  G   L+E+ L   ++        L    +   
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 196 LSLQCNRLRTIENLEAL--------TNLTQLYLSENGLTTI------ENLLSNEKLETLD 241
           L LQ N L   E  + L          +T L LS N LT        E L  N  +  L 
Sbjct: 131 LGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 242 VAYNKIS------IIQNIAHLTELQEFWINDNQVSD---WNTVNVLENNKQLQTIYLDRN 292
           + +  +       +   +    +LQE  +  N   D            +  L+ ++L  N
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 293 PV 294
            +
Sbjct: 250 EL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 38/201 (18%)

Query: 81  TTLKELELYDNQLTVI------ENLDTLINLEILDLSFNRIREIKGLDHLA-------NL 127
             +  L L +N LT        E L    ++  L L    + + +GL+ LA        L
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD-EGLELLAAQLDRNRQL 213

Query: 128 EKLYLCSNKISKI------ENVDHLKKLKVLELGDNKIR------IIENLDGLTNLEELY 175
           ++L +  N                   L++L L  N++       + +          + 
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273

Query: 176 LGKNKISRIDNLASLTKLNILS--LQCNRLRTIENLEALTNLTQLYLSENGLTTI----- 228
           +   + + +    S+    ILS   +         ++    L    L ++   T+     
Sbjct: 274 VSLTEGTAVSEYWSV----ILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRK 329

Query: 229 -ENLLSNEKLETLDVAYNKIS 248
            + L    ++  L        
Sbjct: 330 AQLLRVEGEVRALLEQLGSSG 350

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNR 202
           + L L +N+I  +E    D L NL++LY   NK++ I     D    LT+L  L L  N 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD---KLTQLTQLDLNDNH 92

Query: 203 LRTIEN--LEALTNLTQLYLSEN 223
           L++I     + L +LT +YL  N
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 26/104 (25%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL-DHLANLEKLYLCSNKISK 139
           T  + L L +NQ+T +E                      G+ DHL NL++LY  SNK++ 
Sbjct: 33  TDKQRLWLNNNQITKLEP---------------------GVFDHLVNLQQLYFNSNKLTA 71

Query: 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
           I     D L +L  L+L DN ++ I     D L +L  +YL  N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           +RL L  N I K+E      L  L++L    N+LT I     D L  L  LDL+ N ++ 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 118 I-KG-LDHLANLEKLYLCSN 135
           I +G  D+L +L  +YL +N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 169 TNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
           T+ + L+L  N+I++++      L  L  L    N+L  I     + LT LTQL L++N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 225 LTTI 228
           L +I
Sbjct: 93  LKSI 96

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 29/108 (26%)

Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
           T    L L  N++  +E    + L NL QLY + N LT I               ++K  
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-----------GVFDK-- 79

Query: 249 IIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTIYLDRNP 293
                  LT+L +  +NDN    +         +N K L  IYL  NP
Sbjct: 80  -------LTQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNP 116

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 150 KVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNR 202
           +VL L DN+I  +E    D LT L  L L  N+++ +     D    LT+L  LSL  N+
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD---KLTQLTQLSLNDNQ 89

Query: 203 LRTIEN--LEALTNLTQLYLSEN 223
           L++I     + L +LT ++L  N
Sbjct: 90  LKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 26/104 (25%)

Query: 81  TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGL-DHLANLEKLYLCSNKISK 139
           TT + L LYDNQ+T +E                      G+ D L  L +L L +N+++ 
Sbjct: 30  TTTQVLYLYDNQITKLEP---------------------GVFDRLTQLTRLDLDNNQLTV 68

Query: 140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKN 179
           +     D L +L  L L DN+++ I     D L +L  ++L  N
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 62  ERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIRE 117
           + L L  N I K+E      LT L  L+L +NQLTV+     D L  L  L L+ N+++ 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 118 I-KG-LDHLANLEKLYLCSN 135
           I +G  D+L +L  ++L +N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 169 TNLEELYLGKNKISRIDNLA--SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG 224
           T  + LYL  N+I++++      LT+L  L L  N+L  +     + LT LTQL L++N 
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 225 LTTI 228
           L +I
Sbjct: 90  LKSI 93

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 29/108 (26%)

Query: 191 TKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS 248
           T   +L L  N++  +E    + LT LT+L L  N LT +               ++K  
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-----------AGVFDK-- 76

Query: 249 IIQNIAHLTELQEFWINDNQ---VSDWNTVNVLENNKQLQTIYLDRNP 293
                  LT+L +  +NDNQ   +         +N K L  I+L  NP
Sbjct: 77  -------LTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNP 113

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 29/177 (16%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDN-LASLTKLNILSLQCNRLRTIE 207
            K+L+  + +I II N     +     L   ++ ++   ++     +  +L    LR+  
Sbjct: 82  YKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP 141

Query: 208 NLEALTNLTQLYLSENGLTTIENLLSN-EKLETLDVAYNKISIIQNIAHLTE----LQEF 262
           +L A      L        T+  +  N  +L +L+++ N++  + +++ + +    L+  
Sbjct: 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 201

Query: 263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA----QDPNYRRKIKLVCPWIVQID 315
            ++ N++     ++ ++  K L+ ++LD N +         Y   I+   P ++++D
Sbjct: 202 NLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 78  HMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA----NLEKLYLC 133
           ++   L         L +IE  + +  L  L+LS NR+  +  +  +     NL+ L L 
Sbjct: 147 NIDVVLNRRSCMAATLRIIE--ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS 204

Query: 134 SNKISKIENVDHLKKLKVLEL 154
            N++     +D +K LK+ EL
Sbjct: 205 GNELKSERELDKIKGLKLEEL 225

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 107 ILDLS-FNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENL 165
            LDL       ++   +    L +    +  +  IE  +++ +L  L L +N++  ++++
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE--ENIPELLSLNLSNNRLYRLDDM 188

Query: 166 DGL----TNLEELYLGKNKISRIDNLASLTKLNILSL 198
             +     NL+ L L  N++     L  +  L +  L
Sbjct: 189 SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 225

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 127 LEKLYLCSNKISKIENV--DHLKKLKVLELGDNKIRIIENL-----DGLTNLEELYLGKN 179
           + K Y  S +   ++ +  D     + +++  N+   +        + +  L  L L  N
Sbjct: 121 MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN 180

Query: 180 KISRIDNLASL----TKLNILSLQCNRLRTIENLEALT--NLTQLYLSENGLTTIENLLS 233
           ++ R+D+++S+      L IL+L  N L++   L+ +    L +L+L  N L       S
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240

Query: 234 N 234
            
Sbjct: 241 T 241

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 6e-08
 Identities = 55/307 (17%), Positives = 100/307 (32%), Gaps = 73/307 (23%)

Query: 41  ESEAETTESKAEDEESKEVCIERLLLRWN---LIKK--IENIHMLTTLKE--LELYDNQL 93
                     +          +RL   +N   +  K  +  +     L++  LEL   + 
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 94  TVIEN----------LDTLINLEILD--------LSFNRIREIKGLDHLANLEKLYLCSN 135
            +I+           LD  ++ ++          L+       + +  L  L+KL    +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQID 210

Query: 136 KISKIENVDHLK--KLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL 193
             +     DH    KL++  +     R++++      L  L L         N+ +    
Sbjct: 211 P-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVL--------LNVQNAKAW 259

Query: 194 NILSLQCNRL---RTIENLEALTNLTQLYLSEN----GLTTIE--NLLSN------EKL- 237
           N  +L C  L   R  +  + L+  T  ++S +     LT  E  +LL        + L 
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 238 -ETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ 296
            E L     ++SII     + +    W N      W  VN    +K    I    N    
Sbjct: 320 REVLTTNPRRLSIIA--ESIRDGLATWDN------WKHVN---CDKLTTIIESSLN--VL 366

Query: 297 DPNYRRK 303
           +P   RK
Sbjct: 367 EPAEYRK 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 51/309 (16%), Positives = 105/309 (33%), Gaps = 70/309 (22%)

Query: 17  LVT----LNVEAVENTHGNQMSLDNPD---EESEAETTESKA----EDEESKEVC-IERL 64
           L+T       + +       +SLD+        E ++   K       +  +EV      
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 65  LL------------RWNLIKKIENIHMLTTLK---------EL-ELYDNQLTVIENLDTL 102
            L             W+  K +    + T ++         E  +++D +L+V       
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPP-SAH 386

Query: 103 IN---LEIL--DLSFNRIREIKGLDHLAN---LEKLYLCSNKISKIENVDHLKKLKVLEL 154
           I    L ++  D+  + +  +  ++ L     +EK     + IS I ++    K+K+   
Sbjct: 387 IPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEK-QPKESTIS-IPSIYLELKVKLENE 442

Query: 155 GDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTN 214
                 I+++ +     +   L       +D           S   + L+ IE+ E +T 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPP---YLDQY-------FYSHIGHHLKNIEHPERMTL 492

Query: 215 LTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEF--WINDNQVSDW 272
              ++L       +E      K+     A+N    I N   L +L+ +  +I DN     
Sbjct: 493 FRMVFLD---FRFLEQ-----KIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYE 542

Query: 273 NTVNVLENN 281
             VN + + 
Sbjct: 543 RLVNAILDF 551

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.1 bits (117), Expect = 9e-07
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 29/204 (14%)

Query: 104 NLEILDLSFNRIREI--KGLDHLA----NLEKLYL--CSNKISK--IEN-VDHLKKLKVL 152
           NL+ LDL  + + ++    L H      +L  L +   ++++S   +E  V     LK L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 153 ELGDNKI--RIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLE 210
           +L       ++   L     LEEL  G    +        + L++    C  LR +    
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTG--GYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 211 ALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS---IIQNIAHLTELQEFWINDN 267
                         L  + ++ S   L TL+++Y  +    +++ +    +LQ  W+ D 
Sbjct: 275 DAVP--------AYLPAVYSVCSR--LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

Query: 268 QVSDWNTVNVLENNKQLQTIYLDR 291
            + D     +    K L+ + +  
Sbjct: 325 -IEDAGLEVLASTCKDLRELRVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 49/264 (18%)

Query: 69  NLIKKIENIHMLTTLK-ELELYDNQLTVIENLDTLINLEILDLSFNRIRE---IKGLDHL 124
            L   +     L  L    +     L  +        L  L+LS+  ++    +K L   
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 125 ANLEKLYLCSNKISKIENVD------HLKKLKVLELGDNKIRIIENLDGLT--------- 169
             L++L++       IE+          K L+ L +  ++  ++E    LT         
Sbjct: 314 PKLQRLWVLDY----IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369

Query: 170 ---NLEELYLGKNKISR------IDNLASLTKLNILSLQCNRLRTIEN----------LE 210
               LE +     +++         N  ++T+  +  ++      +            +E
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 211 ALTNLTQLYLSEN-GLTTIENLLSN-EKLETLDVAYNKIS---IIQNIAHLTELQEFWIN 265
              +L +L LS        E + +  +K+E L VA+   S   +   ++    L++  I 
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 266 DNQVSDWNTVNVLENNKQLQTIYL 289
           D    D   +      + ++++++
Sbjct: 490 DCPFGDKALLANASKLETMRSLWM 513

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 26/129 (20%)

Query: 80  LTTLKELELYDNQLT--VIENLDT--LINLEILDLSFNR-----------IREIKGLDHL 124
              LK LE+    L   V+E++    L NLE L L                R +   D  
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 125 ANLEKLYLCSNKIS-----KIENVDHLKKLKVLELGDNKIR------IIENLDGLTNLEE 173
            NL+ L +   +            D L +L+ +++    +       +++++D + +L+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 174 LYLGKNKIS 182
           + +  N +S
Sbjct: 312 INMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 9e-05
 Identities = 29/208 (13%), Positives = 69/208 (33%), Gaps = 36/208 (17%)

Query: 99  LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK--IENV--DHLKKLKVLEL 154
           LD +  L  L +       I       NL+ L + S  +    +E++    L  L+ L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 155 GDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL-----RTIENL 209
                  +E+     ++            + +      L  L +                
Sbjct: 227 YVG----VEDYGFDGDMNVF-------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 210 EALTNLTQLYLSENGLTT------IENLLSNEKLETLDVAYNKIS------IIQNIAHLT 257
           + L  L  + +S   LT       ++++   + L+ +++ YN +S      + +++    
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335

Query: 258 ELQEFWINDNQVSDWNTVNVLENNKQLQ 285
           ++ +    D+   D++   + E      
Sbjct: 336 DVSDSQEYDD---DYSYPMITELEHHHH 360

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 36/291 (12%), Positives = 80/291 (27%), Gaps = 51/291 (17%)

Query: 70  LIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLA---N 126
               +     L  L    +  N++ ++        +  LDL +  +        +    N
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPIL--FPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319

Query: 127 LEKLYLCS----NKISKIENVDHLKKLKVLELGDNKIRIIENLD--------------GL 168
           LE L   +      +  +    + K+LK L +           +              G 
Sbjct: 320 LEVLETRNVIGDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377

Query: 169 TNLEELYLGKNKISR------IDNLASLTKLNILSLQCNRLRTIENLEA--------LTN 214
             LE + +  + I+          L +L    ++ L      T   L+            
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437

Query: 215 LTQLYLSEN-------GLTTIENLLSNEKLETLDVAYNKIS---IIQNIAHLTELQEFWI 264
           L +             GL+ I     N  +  + + Y   S   +++       LQ+  +
Sbjct: 438 LRRFAFYLRQGGLTDLGLSYIGQYSPN--VRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495

Query: 265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID 315
                S+      +     L+ +++     +       ++      I  I 
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	319
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.87
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.35
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.27

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.5e-34  Score=251.79  Aligned_cols=295  Identities=25%  Similarity=0.332  Sum_probs=224.1

Q ss_pred             CceEEEEEeeeccc----cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccC
Q psy14728         15 DNLVTLNVEAVENT----HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYD   90 (319)
Q Consensus        15 ~~l~~l~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~   90 (319)
                      ++++.++++.....    ......++.++++.+......    .+..+++|++|++++|.+..++.+..+++|++|++++
T Consensus        44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS----PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE  119 (347)
T ss_dssp             TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred             ccccEEEEeCCccccchhhhhcCCccEEEccCCccccch----hhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence            34455555443322    222334555666555443321    1667777777777777777776677777777777777


Q ss_pred             CCccCccCCCCCCCCcEEEccCC-CCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCC
Q psy14728         91 NQLTVIENLDTLINLEILDLSFN-RIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLT  169 (319)
Q Consensus        91 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~  169 (319)
                      |.++.++.+..+++|++|++++| ....++.+..+++|++|++++|.+...+.+..+++|++|++++|.+..++.+..++
T Consensus       120 n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~  199 (347)
T 4fmz_A          120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLT  199 (347)
T ss_dssp             SCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCT
T ss_pred             CcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCC
Confidence            77776665777777777777777 34445556777777778877777777666777788888888888777666677788


Q ss_pred             CccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCC
Q psy14728        170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI  249 (319)
Q Consensus       170 ~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  249 (319)
                      +|+.+++++|.+.+.+.+..+++|++|++++|+++.++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.
T Consensus       200 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          200 SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC
Confidence            88888888888777766788888999999999888877788889999999999998888888888999999999999988


Q ss_pred             ccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        250 IQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       250 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ++.+..+++|++|++++|++++. .+..+..+++|+.|++++|+++..+.     +..+++|+.|++++|
T Consensus       280 ~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          280 ISVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQ  343 (347)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCGG-GHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC
T ss_pred             ChhhcCCCCCCEEECcCCcCCCc-ChhHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhh
Confidence            88888899999999999998873 44667889999999999999988876     567999999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.8e-33  Score=243.53  Aligned_cols=276  Identities=26%  Similarity=0.341  Sum_probs=237.8

Q ss_pred             ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCC
Q psy14728         34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN  113 (319)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  113 (319)
                      .++.++++.+....-    ..+..+++|++|++++|.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|
T Consensus        45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED  120 (347)
T ss_dssp             TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS
T ss_pred             cccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC
Confidence            355555555444321    3477889999999999998888778889999999999998888888888999999999999


Q ss_pred             CCccccCCCCCCCccEEEccCCc-ccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCC
Q psy14728        114 RIREIKGLDHLANLEKLYLCSNK-ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK  192 (319)
Q Consensus       114 ~~~~l~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~  192 (319)
                      .+..++.+..+++|+.|++++|. ....+.+..+++|++|+++++.+.....+..+++|++|++++|.+.+++.+..+++
T Consensus       121 ~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~  200 (347)
T 4fmz_A          121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS  200 (347)
T ss_dssp             CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTT
T ss_pred             cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCc
Confidence            98888778888999999999984 45556788899999999999988877778889999999999999888877888999


Q ss_pred             CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728        193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW  272 (319)
Q Consensus       193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  272 (319)
                      |+.+++++|.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.++.++.+..+++|++|++++|+++++
T Consensus       201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  280 (347)
T 4fmz_A          201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI  280 (347)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             cceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC
Confidence            99999999999887778899999999999999999888999999999999999999998899999999999999999985


Q ss_pred             cccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        273 NTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       273 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                         ..+..+++|+.|++++|++...+.   ..+..+++|+.|++++|
T Consensus       281 ---~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          281 ---SVLNNLSQLNSLFLNNNQLGNEDM---EVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             ---GGGGGCTTCSEEECCSSCCCGGGH---HHHHTCTTCSEEECCSS
T ss_pred             ---hhhcCCCCCCEEECcCCcCCCcCh---hHhhccccCCEEEccCC
Confidence               457889999999999999987654   35678999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3e-32  Score=248.73  Aligned_cols=256  Identities=35%  Similarity=0.425  Sum_probs=116.5

Q ss_pred             ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcccc---------------
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK---------------  119 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---------------  119 (319)
                      +..+++|++|+++++.+.+++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..++               
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN  165 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCC
Confidence            44444444444444444444334444444444444444443333444444444444444333322               


Q ss_pred             ------CCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCC
Q psy14728        120 ------GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKL  193 (319)
Q Consensus       120 ------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L  193 (319)
                            .+..+++|+.|++++|.++.++.+..+++|++|++++|.+.....+..+++|+.|++++|.+.+++.+..+++|
T Consensus       166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L  245 (466)
T 1o6v_A          166 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL  245 (466)
T ss_dssp             SCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             cccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCC
Confidence                  23334444444444444444444444444444444444443333333444444444444444444334444444


Q ss_pred             CEEECCCCC----------------------CCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCcc
Q psy14728        194 NILSLQCNR----------------------LRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ  251 (319)
Q Consensus       194 ~~L~l~~~~----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  251 (319)
                      +.|++++|.                      +..++.+..+++|+.|++++|++++++.+..+++|+.|++++|.++++.
T Consensus       246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG
T ss_pred             CEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch
Confidence            444444444                      4443334444444444444444444444444444444444444444443


Q ss_pred             ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728        252 NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       252 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~  318 (319)
                      .+..+++|++|++++|++++.   ..+..+++|+.|++++|++...+.     +..+++|+.|++++
T Consensus       326 ~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          326 PVSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP-----LANLTRITQLGLND  384 (466)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCCEEECCC
T ss_pred             hhccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch-----hhcCCCCCEEeccC
Confidence            344445555555555544442   234445555555555555554433     34455555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.3e-31  Score=244.57  Aligned_cols=257  Identities=33%  Similarity=0.384  Sum_probs=188.7

Q ss_pred             cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728         54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC  133 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~  133 (319)
                      .+..+++|++|++++|.+.+++.+..+++|++|++++|.++.++.+.++++|++|++++|.+..++.+..+++|++|+++
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  142 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  142 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence            47789999999999999999888999999999999999998776699999999999999999998889999999999999


Q ss_pred             CCcccccCCCC---------------------CCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCC
Q psy14728        134 SNKISKIENVD---------------------HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK  192 (319)
Q Consensus       134 ~~~~~~~~~~~---------------------~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~  192 (319)
                      +|.++.++.+.                     .+++|++|++++|.+..++.+..+++|++|++++|.+.+...+..+++
T Consensus       143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~  222 (466)
T 1o6v_A          143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN  222 (466)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT
T ss_pred             CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCC
Confidence            99887765443                     455666666666666655556667777777777777666655666777


Q ss_pred             CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728        193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW  272 (319)
Q Consensus       193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  272 (319)
                      |++|++++|++..++.+..+++|+.|++++|.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|++.+.
T Consensus       223 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~  302 (466)
T 1o6v_A          223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI  302 (466)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC
T ss_pred             CCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc
Confidence            77788877777776666677777777777777776655666666777777776666655555666666666666666553


Q ss_pred             cccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728        273 NTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       273 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~  318 (319)
                      ..   +..+++|+.|++++|++...+.     +..+++|+.|++++
T Consensus       303 ~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          303 SP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYN  340 (466)
T ss_dssp             GG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCS
T ss_pred             hh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCC
Confidence            21   4455555666666655555443     23455555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=5.4e-29  Score=226.16  Aligned_cols=210  Identities=26%  Similarity=0.344  Sum_probs=105.3

Q ss_pred             cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728         54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC  133 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~  133 (319)
                      .+..+++|++|+++++.+++++.+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ +..+++|++|+++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~  114 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD  114 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence            34445555555555555555555555555555555555555443 455555555555555555543 4455555555555


Q ss_pred             CCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC-CccccCCCCCCCCCEEECCCCCCCCCcCCcCC
Q psy14728        134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK-ISRIDNLASLTKLNILSLQCNRLRTIENLEAL  212 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  212 (319)
                      +|.+++++ +..+++|++|++++|.+..++ ++.+++|++|++++|. +..+ .+..+++|+.|++++|+++.++ +..+
T Consensus       115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l  190 (457)
T 3bz5_A          115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD-VSQN  190 (457)
T ss_dssp             SSCCSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCC-CTTC
T ss_pred             CCcCCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceec-cccC
Confidence            55555543 455555555555555554432 4445555555555552 2222 3444445555555555554443 4444


Q ss_pred             CCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728        213 TNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       213 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      ++|+.|++++|.+++++ +..+++|+.|++++|++++++ +..+++|++|++++|++++
T Consensus       191 ~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC
T ss_pred             CCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCC
Confidence            45555555555544442 444445555555555544444 4444455555555554444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.2e-29  Score=222.24  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             ccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCcc
Q psy14728         55 ESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLE  128 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~  128 (319)
                      +..+++|++|+++++.+..++  .+..+++|++|++++|.++.+  ..++.+++|++|++++|.+..++.  +..+++|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            344455555555555444432  244455555555555544432  124444555555555555444442  34445555


Q ss_pred             EEEccCCcccccC--CCCCCCCccEEEccCCcC
Q psy14728        129 KLYLCSNKISKIE--NVDHLKKLKVLELGDNKI  159 (319)
Q Consensus       129 ~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~  159 (319)
                      +|++++|.++.++  .+..+++|++|++++|.+
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            5555555444432  244444555555544444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=6.1e-29  Score=221.80  Aligned_cols=294  Identities=18%  Similarity=0.212  Sum_probs=200.8

Q ss_pred             ccCCCceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCC
Q psy14728         11 EVDNDNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTT   82 (319)
Q Consensus        11 ~~~~~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~   82 (319)
                      .+...+++.+.++......      .....++.++++.+......+  ..+..+++|++|++++|.+..++  .+..+++
T Consensus        41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh--hhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            4445566666665543321      122346666666665544332  46677777777777777777664  2667777


Q ss_pred             CCEEEccCCCccCccC--CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCc
Q psy14728         83 LKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK  158 (319)
Q Consensus        83 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  158 (319)
                      |++|++++|.++.++.  +..+++|++|++++|.+..++  .+..+++|++|++++|.++.. .+..+++|+.++++++.
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccc
Confidence            7777777777775543  567777777777777777664  366777777777777777665 34566777777777776


Q ss_pred             CcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCcc--ccCCCCC
Q psy14728        159 IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEK  236 (319)
Q Consensus       159 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~  236 (319)
                      +..+   ...++|+.|++++|.+..++. ...++|+.|++++|.++..+.+..+++|++|++++|.+++++  .+..+++
T Consensus       198 l~~~---~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (390)
T 3o6n_A          198 LSTL---AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR  273 (390)
T ss_dssp             CSEE---ECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred             cccc---CCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence            5433   234567777777777766532 234678888888888877777777888888888888877652  3677788


Q ss_pred             ccEEEccCCCCCCccc-cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEe
Q psy14728        237 LETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID  315 (319)
Q Consensus       237 L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~  315 (319)
                      |++|++++|.++.++. +..+++|++|++++|+++..+  ..+..+++|+.|++++|+++..+      ...+++|+.|+
T Consensus       274 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~  345 (390)
T 3o6n_A          274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLT  345 (390)
T ss_dssp             CCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEE
T ss_pred             CCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEE
Confidence            8888888888876643 456788888888888877633  44567788888888888887764      34678888888


Q ss_pred             cccC
Q psy14728        316 ATLA  319 (319)
Q Consensus       316 ~~~C  319 (319)
                      ++++
T Consensus       346 l~~N  349 (390)
T 3o6n_A          346 LSHN  349 (390)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            7753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=5e-29  Score=228.11  Aligned_cols=265  Identities=27%  Similarity=0.301  Sum_probs=153.4

Q ss_pred             cCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccC--CCCCCCCcEEEc
Q psy14728         35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDL  110 (319)
Q Consensus        35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l  110 (319)
                      ++.++++.+...+..+  ..+..+++|++|++++|.+..+.  .+..+++|++|++++|+++.++.  +.++++|++|++
T Consensus        34 l~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQ--DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             CSEEECCSSCCCEECT--TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CcEEECCCCccceECH--hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            3444444444433322  44555666666666666555442  35556666666666665554332  455566666666


Q ss_pred             cCCCCcccc--CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc
Q psy14728        111 SFNRIREIK--GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI  184 (319)
Q Consensus       111 ~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~  184 (319)
                      ++|.+..++  .+..+++|++|++++|.++.+.  .+..+++|++|++++|.+..++  .+..+++|+.|++.+|.+..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            666555442  3555556666666666555432  4555555666666555554332  244455555555555544433


Q ss_pred             --cCCCCCC------------------------CCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCC
Q psy14728        185 --DNLASLT------------------------KLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSN  234 (319)
Q Consensus       185 --~~l~~~~------------------------~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~  234 (319)
                        ..+..++                        +|++|++++|+++.++  .+..+++|+.|++++|.++.++.  +..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence              1233333                        5556666666665554  25666777777777777776543  6666


Q ss_pred             CCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728        235 EKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR  302 (319)
Q Consensus       235 ~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  302 (319)
                      ++|++|++++|.++.+  ..+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++...|
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~c~c~~~~  340 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE-ESVFHSVGNLETLILDSNPLACDCRLLW  340 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC-GGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC-HhHcCCCcccCEEEccCCCccCccchHh
Confidence            7777777777777654  34667777777777777777643 2456667777777777777777776544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=5.3e-28  Score=219.62  Aligned_cols=269  Identities=21%  Similarity=0.234  Sum_probs=151.1

Q ss_pred             cccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccC
Q psy14728         33 MSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSF  112 (319)
Q Consensus        33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  112 (319)
                      ..++.++++.+...+.    ..+..+++|++|++++|.+++++ ++.+++|++|++++|.++.++ ++.+++|++|++++
T Consensus        42 ~~L~~L~Ls~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM----TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDT  115 (457)
T ss_dssp             TTCCEEECCSSCCCCC----TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCS
T ss_pred             CCCCEEEccCCCcccC----hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCC
Confidence            3344455555444332    13566667777777777666664 666667777777766666553 66666677777766


Q ss_pred             CCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCC
Q psy14728        113 NRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTK  192 (319)
Q Consensus       113 ~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~  192 (319)
                      |.+..++ +..+++|++|++++|.+++++ +..+++|++|++++|.......+..+++|++|++++|.+++++ +..+++
T Consensus       116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~  192 (457)
T 3bz5_A          116 NKLTKLD-VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKL  192 (457)
T ss_dssp             SCCSCCC-CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-CTTCTT
T ss_pred             CcCCeec-CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-cccCCC
Confidence            6666654 566666666666666666653 5555666666666553221113445555555555555555544 444555


Q ss_pred             CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCcc---------------------
Q psy14728        193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ---------------------  251 (319)
Q Consensus       193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------------------  251 (319)
                      |+.|++++|+++.++ +..+++|+.|++++|+++++| +..+++|+.|++++|.+++++                     
T Consensus       193 L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          193 LNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             CCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             CCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEE
Confidence            555555555554442 444455555555555555544 444455555555555444322                     


Q ss_pred             ----------ccccCCCCcEEEcCCCcCCCCcc-----c--ccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEE
Q psy14728        252 ----------NIAHLTELQEFWINDNQVSDWNT-----V--NVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQI  314 (319)
Q Consensus       252 ----------~l~~~~~L~~L~l~~n~~~~~~~-----~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l  314 (319)
                                .+..+++|++|++++|...+...     .  -.+.++++|+.|++++|.++..+      +..|++|+.|
T Consensus       271 l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------l~~l~~L~~L  344 (457)
T 3bz5_A          271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------VSHNTKLKSL  344 (457)
T ss_dssp             CTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------CTTCTTCSEE
T ss_pred             CCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------cccCCcCcEE
Confidence                      12344556666666664322100     0  01456677788888888777752      4567888888


Q ss_pred             eccc
Q psy14728        315 DATL  318 (319)
Q Consensus       315 ~~~~  318 (319)
                      ++++
T Consensus       345 ~l~~  348 (457)
T 3bz5_A          345 SCVN  348 (457)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            7764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=3.7e-28  Score=228.68  Aligned_cols=127  Identities=24%  Similarity=0.367  Sum_probs=54.0

Q ss_pred             CCCCCccEEEccCCcCcCc-cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC-Cc--CCcCCCCCCe
Q psy14728        144 DHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT-IE--NLEALTNLTQ  217 (319)
Q Consensus       144 ~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~-~~--~~~~~~~L~~  217 (319)
                      ..+++|++|++++|.+..+ ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+.. ++  .+..+++|++
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  354 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE  354 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred             ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence            3344555555555544433 2344455555555555554433  123344444444444443321 11  1334444555


Q ss_pred             EeccCCcCcCcc----ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCC
Q psy14728        218 LYLSENGLTTIE----NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVS  270 (319)
Q Consensus       218 L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~  270 (319)
                      |++++|.+++.+    .+..+++|++|++++|.+..+  ..+..+++|++|++++|++.
T Consensus       355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            555544444331    234444444444444444321  12333344444444444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=222.41  Aligned_cols=278  Identities=21%  Similarity=0.269  Sum_probs=204.1

Q ss_pred             CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccc--cccCCCCCEE
Q psy14728         15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIEN--IHMLTTLKEL   86 (319)
Q Consensus        15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L   86 (319)
                      .+++.++++.+...      ......++.++++.+...+..+  ..+..+++|++|++++|.++.++.  +..+++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh--hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            46677777665543      2334457777777776655444  678889999999999999888763  7888999999


Q ss_pred             EccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCc
Q psy14728         87 ELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIR  160 (319)
Q Consensus        87 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  160 (319)
                      ++++|+++.+  ..+..+++|++|++++|.+..++  .+..+++|+.|++++|.++.++  .+..+++|+.|+++++.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            9999988743  34788888999999888887664  5777888888888888877654  3566677777777766654


Q ss_pred             Ccc--ccCCCC------------------------CccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCcC--Cc
Q psy14728        161 IIE--NLDGLT------------------------NLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIEN--LE  210 (319)
Q Consensus       161 ~~~--~l~~~~------------------------~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~  210 (319)
                      .+.  .+..++                        +|++|++++|.+..++  .+..+++|+.|++++|.+..++.  +.
T Consensus       190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            221  233333                        5566666666666654  47788999999999999987643  78


Q ss_pred             CCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        211 ALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       211 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      .+++|+.|++++|++++++  .+..+++|+.|++++|.++.++  .+..+++|++|++++|.+........+  ......
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~~~  347 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRRWR  347 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--HTTTTS
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--Hhhhhc
Confidence            8999999999999999874  4889999999999999999864  478899999999999998864322222  122333


Q ss_pred             EEcCCCcCcC
Q psy14728        287 IYLDRNPVAQ  296 (319)
Q Consensus       287 L~l~~n~~~~  296 (319)
                      +.+.++...+
T Consensus       348 ~~~~~~~~~C  357 (477)
T 2id5_A          348 LNFNRQQPTC  357 (477)
T ss_dssp             SCCTTCCCBE
T ss_pred             cccCccCcee
Confidence            4455555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.2e-28  Score=229.69  Aligned_cols=256  Identities=20%  Similarity=0.222  Sum_probs=132.0

Q ss_pred             hcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccC--CCCCCC
Q psy14728         53 DEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKG--LDHLAN  126 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~  126 (319)
                      ..+..+++|+.|++++|.+.+++  .+..+++|++|++++|.++.++  .++++++|++|++++|.+..+|.  +..+++
T Consensus        69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  148 (597)
T 3oja_B           69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK  148 (597)
T ss_dssp             HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCC
Confidence            34556666666666666666553  3566666666666666665432  25666666666666666666553  456666


Q ss_pred             ccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc-------------------ccc
Q psy14728        127 LEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS-------------------RID  185 (319)
Q Consensus       127 L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~-------------------~~~  185 (319)
                      |++|++++|.+++++  .+..+++|++|++++|.+..++ +..+++|+.|++++|.+.                   .++
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR  227 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence            666666666666543  4566666666666666554332 233344444444433332                   221


Q ss_pred             CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCccc-cccCCCCcEE
Q psy14728        186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN-IAHLTELQEF  262 (319)
Q Consensus       186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L  262 (319)
                      .. ..++|+.|++++|.++.++.+..+++|+.|++++|.+++++  .+..+++|+.|++++|.++.++. +..+++|++|
T Consensus       228 ~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  306 (597)
T 3oja_B          228 GP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL  306 (597)
T ss_dssp             CS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred             cc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence            10 11344555555555544444445555555555555554431  24445555555555555544332 2334555555


Q ss_pred             EcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728        263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       263 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~  318 (319)
                      ++++|.++..  +..+..+++|+.|++++|+++..+      ...++.|+.|++++
T Consensus       307 ~Ls~N~l~~i--~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~  354 (597)
T 3oja_B          307 DLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSH  354 (597)
T ss_dssp             ECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCS
T ss_pred             ECCCCCCCcc--CcccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeC
Confidence            5555555432  123344455555555555544432      23344555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.5e-28  Score=232.22  Aligned_cols=298  Identities=21%  Similarity=0.274  Sum_probs=227.2

Q ss_pred             CCCceEEEEEeeeccc------cccccccCCCCcchhh-hhc-cCchhhcccc------cccceEEEecCCcccCccc--
Q psy14728         13 DNDNLVTLNVEAVENT------HGNQMSLDNPDEESEA-ETT-ESKAEDEESK------EVCIERLLLRWNLIKKIEN--   76 (319)
Q Consensus        13 ~~~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~------~~~L~~L~l~~~~~~~l~~--   76 (319)
                      ...++++++++.+...      ..+...++.++++.+. ..+ ..+  ..+..      +++|+.|++++|.++.+|.  
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp--~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK--DDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH--HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch--HHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence            4677888888876422      3344567777777776 544 333  44444      4889999999998888875  


Q ss_pred             -cccCCCCCEEEccCCCcc-CccCCCCCCCCcEEEccCCCCcccc-CCCCCCC-ccEEEccCCcccccCC-CCC--CCCc
Q psy14728         77 -IHMLTTLKELELYDNQLT-VIENLDTLINLEILDLSFNRIREIK-GLDHLAN-LEKLYLCSNKISKIEN-VDH--LKKL  149 (319)
Q Consensus        77 -~~~~~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~-L~~L~l~~~~~~~~~~-~~~--~~~L  149 (319)
                       +..+++|++|++++|+++ .++.+..+++|++|++++|.+..+| .+..+++ |++|++++|.++.+|. +..  +++|
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence             788899999999999887 6667888889999999999888776 4777888 9999999998887763 343  3489


Q ss_pred             cEEEccCCcCcCc--cccC-------CCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcC-----
Q psy14728        150 KVLELGDNKIRII--ENLD-------GLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEA-----  211 (319)
Q Consensus       150 ~~L~l~~~~~~~~--~~l~-------~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~-----  211 (319)
                      ++|++++|.+...  ..+.       .+++|++|++++|.+..++.  +..+++|+.|++++|+++.+|.  +..     
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            9999998887532  3344       66789999999998887643  4568889999999998887653  222     


Q ss_pred             --CCCCCeEeccCCcCcCccc-cC--CCCCccEEEccCCCCCCcc-ccccCCCCcEEEcC------CCcCCCCccccccc
Q psy14728        212 --LTNLTQLYLSENGLTTIEN-LL--SNEKLETLDVAYNKISIIQ-NIAHLTELQEFWIN------DNQVSDWNTVNVLE  279 (319)
Q Consensus       212 --~~~L~~L~l~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~------~n~~~~~~~~~~~~  279 (319)
                        +++|+.|++++|.++.+|. +.  .+++|++|++++|.++.++ .+..+++|++|+++      +|++.+ ..+..+.
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~  563 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGIT  563 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGG
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc-cChHHHh
Confidence              2389999999999988875 54  8899999999999988764 57888999999995      455555 3456778


Q ss_pred             CCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        280 NNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       280 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      .+++|+.|++++|++...|..      ..++|+.||+++|
T Consensus       564 ~l~~L~~L~Ls~N~l~~ip~~------~~~~L~~L~Ls~N  597 (636)
T 4eco_A          564 LCPSLTQLQIGSNDIRKVNEK------ITPNISVLDIKDN  597 (636)
T ss_dssp             GCSSCCEEECCSSCCCBCCSC------CCTTCCEEECCSC
T ss_pred             cCCCCCEEECCCCcCCccCHh------HhCcCCEEECcCC
Confidence            889999999999999887773      2388999998875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.3e-28  Score=232.66  Aligned_cols=281  Identities=19%  Similarity=0.255  Sum_probs=196.4

Q ss_pred             cccccCCCCcchhhhhccCchhhcccccccceEEEecCCc-ccC--cc-ccccC------CCCCEEEccCCCccCccC--
Q psy14728         31 NQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNL-IKK--IE-NIHML------TTLKELELYDNQLTVIEN--   98 (319)
Q Consensus        31 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--l~-~~~~~------~~L~~L~l~~~~~~~~~~--   98 (319)
                      +...++.++++.+...+..+  ..+..+++|+.|++++|. +++  +| .++.+      ++|++|++++|+++.++.  
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLP--TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             ccCCCCEEEecCCcCCccCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence            34456666666666665555  666777777777777776 664  44 24443      777777777777765543  


Q ss_pred             -CCCCCCCcEEEccCCCCc-cccCCCCCCCccEEEccCCcccccC-CCCCCCC-ccEEEccCCcCcCccc-cCC--CCCc
Q psy14728         99 -LDTLINLEILDLSFNRIR-EIKGLDHLANLEKLYLCSNKISKIE-NVDHLKK-LKVLELGDNKIRIIEN-LDG--LTNL  171 (319)
Q Consensus        99 -~~~l~~L~~L~l~~~~~~-~l~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~-L~~L~l~~~~~~~~~~-l~~--~~~L  171 (319)
                       ++.+++|++|++++|.+. .+|.+..+++|+.|++++|.++.++ .+..+++ |++|++++|.+..++. +..  +++|
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence             677777788888777777 6676777777788888877777665 5667777 8888888877764443 333  3378


Q ss_pred             cEEEcCCCCCccc--cCCC-------CCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCC-----
Q psy14728        172 EELYLGKNKISRI--DNLA-------SLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLS-----  233 (319)
Q Consensus       172 ~~L~l~~~~l~~~--~~l~-------~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~-----  233 (319)
                      ++|++++|.+.+.  ..+.       .+++|+.|++++|+++.+|.  +..+++|+.|++++|+++.+|.  +..     
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            8888888877653  2344       56678888888888887654  4567888888888888887653  222     


Q ss_pred             --CCCccEEEccCCCCCCccc-cc--cCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCC------CcCc-CChhhH
Q psy14728        234 --NEKLETLDVAYNKISIIQN-IA--HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDR------NPVA-QDPNYR  301 (319)
Q Consensus       234 --~~~L~~L~l~~~~~~~~~~-l~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~------n~~~-~~~~~~  301 (319)
                        +++|+.|++++|.++.++. +.  .+++|++|++++|++++  .+..+..+++|+.|++++      |.+. ..|.  
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--  560 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--  560 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChH--
Confidence              2288888888888886643 44  78888888888888887  346677888888888854      4444 3343  


Q ss_pred             HHHHHhCCceEEEecccC
Q psy14728        302 RKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       302 ~~~~~~~~~L~~l~~~~C  319 (319)
                        .+..+++|+.|++++|
T Consensus       561 --~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          561 --GITLCPSLTQLQIGSN  576 (636)
T ss_dssp             --TGGGCSSCCEEECCSS
T ss_pred             --HHhcCCCCCEEECCCC
Confidence              2567888998888875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=9.3e-29  Score=224.92  Aligned_cols=283  Identities=23%  Similarity=0.295  Sum_probs=168.4

Q ss_pred             CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-c-ccccCCCCCEE
Q psy14728         15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-E-NIHMLTTLKEL   86 (319)
Q Consensus        15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~-~~~~~~~L~~L   86 (319)
                      +++++++++.+...      ..+...++.++++.+...+..+ ...+..+++|++|++++|.+..+ + .+..+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            45666666655433      2233345555665554432221 24566677777777777776654 2 36677777777


Q ss_pred             EccCCCccC--ccC--CCCCCCCcEEEccCCCCccc-cC--CCCCCCccEEEccCCcccccC--CCC-------------
Q psy14728         87 ELYDNQLTV--IEN--LDTLINLEILDLSFNRIREI-KG--LDHLANLEKLYLCSNKISKIE--NVD-------------  144 (319)
Q Consensus        87 ~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~~~~l-~~--~~~l~~L~~L~l~~~~~~~~~--~~~-------------  144 (319)
                      ++++|.++.  +..  +..+++|++|++++|.+..+ |.  +..+++|++|++++|.++...  .+.             
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            777777664  333  66677777777777777655 32  556777777777777665532  111             


Q ss_pred             ---------------------CCCCccEEEccCCcCcCc--cc-------------------------------------
Q psy14728        145 ---------------------HLKKLKVLELGDNKIRII--EN-------------------------------------  164 (319)
Q Consensus       145 ---------------------~~~~L~~L~l~~~~~~~~--~~-------------------------------------  164 (319)
                                           .+++|++|++++|.+...  ..                                     
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence                                 224555555555543210  00                                     


Q ss_pred             cC--CCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCC
Q psy14728        165 LD--GLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEK  236 (319)
Q Consensus       165 l~--~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~  236 (319)
                      +.  ..++|+.|++++|.+.+.  ..+..+++|++|++++|++..++  .+..+++|++|++++|.+++++  .+..+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence            00  113555555555555543  23556667777777777766542  3566677777777777776653  2566677


Q ss_pred             ccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        237 LETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       237 L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      |++|++++|.++.+  ..+..+++|++|++++|++++.+ ...+..+++|+.|++++|++.+.++
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCC-HhHhccCCcccEEEccCCCcccCCC
Confidence            77777777777654  34666777777777777777632 2445667777777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=4.1e-28  Score=227.87  Aligned_cols=255  Identities=20%  Similarity=0.287  Sum_probs=213.4

Q ss_pred             ccccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEE
Q psy14728         57 KEVCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKL  130 (319)
Q Consensus        57 ~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L  130 (319)
                      .+++++.++++++.+..+|.  +..+++|++|++++|.++.++  .+..+++|++|++++|.+..++  .+..+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            47889999999999998875  788999999999999998653  5899999999999999999886  37899999999


Q ss_pred             EccCCcccccCC--CCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCC---
Q psy14728        131 YLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL---  203 (319)
Q Consensus       131 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~---  203 (319)
                      ++++|.++.++.  +..+++|++|++++|.+..+.  .+..+++|++|++++|.+..++ +..+++|+.|++++|.+   
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccc
Confidence            999999998863  689999999999999987543  5889999999999999987753 44455555555555544   


Q ss_pred             ----------------CCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcC
Q psy14728        204 ----------------RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWIN  265 (319)
Q Consensus       204 ----------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~  265 (319)
                                      ..++. ...++|+.|++++|.+++.+.+..+++|+.|++++|.++++  ..+..+++|++|+++
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             cCCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence                            33322 22367899999999999888889999999999999999865  468899999999999


Q ss_pred             CCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        266 DNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       266 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      +|.++++  +..+..+++|+.|++++|++...|..    +..+++|+.|++++|
T Consensus       287 ~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          287 NNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERN----QPQFDRLENLYLDHN  334 (597)
T ss_dssp             TSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGG----HHHHTTCSEEECCSS
T ss_pred             CCCCCCC--CcccccCCCCcEEECCCCCCCccCcc----cccCCCCCEEECCCC
Confidence            9999874  35557789999999999999988874    467899999999876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=5.1e-28  Score=233.54  Aligned_cols=279  Identities=18%  Similarity=0.226  Sum_probs=156.3

Q ss_pred             ccccCCCCcchhhhhccCchhhcccccccceEEEecCCc-ccC--ccc-cc-------cCCCCCEEEccCCCccCccC--
Q psy14728         32 QMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNL-IKK--IEN-IH-------MLTTLKELELYDNQLTVIEN--   98 (319)
Q Consensus        32 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--l~~-~~-------~~~~L~~L~l~~~~~~~~~~--   98 (319)
                      ...|+.++++.+...+..+  ..+..+++|+.|++++|. +++  +|. +.       .+++|++|++++|.++.++.  
T Consensus       490 L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~  567 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLP--DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA  567 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred             CCCCCEEECcCCCCCccCh--HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence            3445556666665555544  556666666666666665 553  331 22       33466666666666664443  


Q ss_pred             -CCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccC-CCCCCCC-ccEEEccCCcCcCccc-cCCC--CCcc
Q psy14728         99 -LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE-NVDHLKK-LKVLELGDNKIRIIEN-LDGL--TNLE  172 (319)
Q Consensus        99 -~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~-L~~L~l~~~~~~~~~~-l~~~--~~L~  172 (319)
                       +.++++|++|++++|.+..+|.+..+++|+.|++++|.++.++ .+..+++ |++|++++|.+..++. +...  ++|+
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG  647 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred             hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence             6666666666666666666666666666666666666666554 4555565 6666666665543321 2222  1244


Q ss_pred             EEEcCCC-----------------------------CCccccC--CCCCCCCCEEECCCCCCCCCcC-C-c-------CC
Q psy14728        173 ELYLGKN-----------------------------KISRIDN--LASLTKLNILSLQCNRLRTIEN-L-E-------AL  212 (319)
Q Consensus       173 ~L~l~~~-----------------------------~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~-~-~-------~~  212 (319)
                      .|++++|                             .+..++.  +..+++|+.|++++|++..+|. . .       .+
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl  727 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT  727 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTG
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccccc
Confidence            4444444                             4443321  1245556666666665555432 1 1       11


Q ss_pred             CCCCeEeccCCcCcCccc-cC--CCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCC------CcCCCCcccccccCCC
Q psy14728        213 TNLTQLYLSENGLTTIEN-LL--SNEKLETLDVAYNKISIIQ-NIAHLTELQEFWIND------NQVSDWNTVNVLENNK  282 (319)
Q Consensus       213 ~~L~~L~l~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~  282 (319)
                      ++|+.|++++|+++.+|. +.  .+++|+.|++++|.+++++ .+..+++|+.|++++      |.+.+ ..+..+..++
T Consensus       728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~  806 (876)
T 4ecn_A          728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCP  806 (876)
T ss_dssp             GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCS
T ss_pred             CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcCC
Confidence            266666666666665553 33  5666666666666666543 355666666666655      44443 2334556666


Q ss_pred             CCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        283 QLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       283 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      +|+.|++++|++...|..      .+++|+.||+++|
T Consensus       807 ~L~~L~Ls~N~L~~Ip~~------l~~~L~~LdLs~N  837 (876)
T 4ecn_A          807 SLIQLQIGSNDIRKVDEK------LTPQLYILDIADN  837 (876)
T ss_dssp             SCCEEECCSSCCCBCCSC------CCSSSCEEECCSC
T ss_pred             CCCEEECCCCCCCccCHh------hcCCCCEEECCCC
Confidence            666677766666655552      2356666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=6.2e-28  Score=232.93  Aligned_cols=280  Identities=18%  Similarity=0.263  Sum_probs=196.8

Q ss_pred             CCCceEEEEEeeeccc------cccccccCCCCcchhh-hhc-cCchhhccc-------ccccceEEEecCCcccCccc-
Q psy14728         13 DNDNLVTLNVEAVENT------HGNQMSLDNPDEESEA-ETT-ESKAEDEES-------KEVCIERLLLRWNLIKKIEN-   76 (319)
Q Consensus        13 ~~~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~-------~~~~L~~L~l~~~~~~~l~~-   76 (319)
                      ...+++.++++.+...      ..+...|+.++++.+. ..+ ..|  ..+.       .+++|+.|++++|.+..+|. 
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP--~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK--ADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH--HHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccch--HHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence            4677888888776422      2334456667777665 443 222  2233       34477777777777776655 


Q ss_pred             --cccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcccc-CCCCCCC-ccEEEccCCcccccCC-CC-------
Q psy14728         77 --IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK-GLDHLAN-LEKLYLCSNKISKIEN-VD-------  144 (319)
Q Consensus        77 --~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~-L~~L~l~~~~~~~~~~-~~-------  144 (319)
                        +..+++|+.|++++|+++.++.++.+++|+.|++++|.+..+| .+..+++ |+.|++++|.++.+|. +.       
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence              6677777777777777765556667777777777777766655 3556666 6666666666554431 11       


Q ss_pred             ------------------------CCCCccEEEccCCcCcCccc--cCCCCCccEEEcCCCCCccccC-CC--------C
Q psy14728        145 ------------------------HLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN-LA--------S  189 (319)
Q Consensus       145 ------------------------~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~-l~--------~  189 (319)
                                              .+++|+.|++++|.+..++.  +..+++|+.|++++|.+..++. +.        +
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence                                    22356666666666554432  2367899999999999887643 22        2


Q ss_pred             CCCCCEEECCCCCCCCCcC-Cc--CCCCCCeEeccCCcCcCccc-cCCCCCccEEEccC------CCCCC-c-cccccCC
Q psy14728        190 LTKLNILSLQCNRLRTIEN-LE--ALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAY------NKISI-I-QNIAHLT  257 (319)
Q Consensus       190 ~~~L~~L~l~~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~------~~~~~-~-~~l~~~~  257 (319)
                      +++|+.|++++|+++.+|. +.  .+++|+.|++++|.++++|. +..+++|+.|++++      |.+.. + ..+..++
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence            3389999999999998765 44  89999999999999999874 88999999999987      55543 3 4688999


Q ss_pred             CCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCCh
Q psy14728        258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP  298 (319)
Q Consensus       258 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  298 (319)
                      +|++|++++|+++..+  ..+.  ++|+.|++++|++....
T Consensus       807 ~L~~L~Ls~N~L~~Ip--~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          807 SLIQLQIGSNDIRKVD--EKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             SCCEEECCSSCCCBCC--SCCC--SSSCEEECCSCTTCEEE
T ss_pred             CCCEEECCCCCCCccC--Hhhc--CCCCEEECCCCCCCccC
Confidence            9999999999996543  3333  79999999999998653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=2.7e-27  Score=222.77  Aligned_cols=261  Identities=21%  Similarity=0.244  Sum_probs=153.4

Q ss_pred             hcccccccceEEEecCCcccCcc-ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCc-ccc--CCCCCCC
Q psy14728         53 DEESKEVCIERLLLRWNLIKKIE-NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR-EIK--GLDHLAN  126 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~-~l~--~~~~l~~  126 (319)
                      ..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.+  ..+..+++|++|++++|.+. .++  .+..+++
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            34666677777777777666665 366667777777777766543  23566666666666666654 333  2556666


Q ss_pred             ccEEEccCCcccccC----CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc---cCCCCCCCCCEEE
Q psy14728        127 LEKLYLCSNKISKIE----NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI---DNLASLTKLNILS  197 (319)
Q Consensus       127 L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~---~~l~~~~~L~~L~  197 (319)
                      |++|++++|.++...    .+..+++|++|++++|.+...  ..+..+++|++|++++|.+...   ..+..+++|+.|+
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  431 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN  431 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence            666666666665532    455666666666666665422  3455566666666666665543   1255566666666


Q ss_pred             CCCCCCCCCc--CCcCCCCCCeEeccCCcCcCc-----cccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCc
Q psy14728        198 LQCNRLRTIE--NLEALTNLTQLYLSENGLTTI-----ENLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQ  268 (319)
Q Consensus       198 l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~  268 (319)
                      +++|.+...+  .+..+++|++|++++|.+++.     ..+..+++|++|++++|.++.+  ..+..+++|++|++++|+
T Consensus       432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            6666665431  255566666666666666541     1255556666666666666543  235566666666666666


Q ss_pred             CCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728        269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~  318 (319)
                      +++. .+..+..++.| .|++++|+++..+..   .+..+++|+.+++++
T Consensus       512 l~~~-~~~~l~~l~~L-~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          512 LTSS-SIEALSHLKGI-YLNLASNHISIILPS---LLPILSQQRTINLRQ  556 (606)
T ss_dssp             CCGG-GGGGGTTCCSC-EEECCSSCCCCCCGG---GHHHHHTSSEEECTT
T ss_pred             cCcC-ChhHhCccccc-EEECcCCcccccCHh---hcccCCCCCEEeCCC
Confidence            6652 33455566666 666666666655441   234555666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=9.3e-28  Score=225.99  Aligned_cols=128  Identities=23%  Similarity=0.240  Sum_probs=79.2

Q ss_pred             CCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCcc---ccCCCCCccEEEccCCCCCCc--cccccCCCCcEE
Q psy14728        189 SLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIE---NLLSNEKLETLDVAYNKISII--QNIAHLTELQEF  262 (319)
Q Consensus       189 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L  262 (319)
                      .+++|++|++++|.+..++ .+..+++|++|++++|.+.+.+   .+..+++|++|++++|.+...  ..+..+++|++|
T Consensus       374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            3344444444444443332 2455566666666666665542   355666777777777766542  346677777777


Q ss_pred             EcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       263 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ++++|.+++...+..+..+++|+.|++++|.++..+.   ..+..+++|+.|++++|
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW---GVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSS
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh---hhhcccccCCEEECCCC
Confidence            7777777653344566777888888888887776543   13567788888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=2e-27  Score=216.14  Aligned_cols=260  Identities=25%  Similarity=0.292  Sum_probs=207.6

Q ss_pred             ccCCCceEEEEEeeeccc-------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccC--ccc--ccc
Q psy14728         11 EVDNDNLVTLNVEAVENT-------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK--IEN--IHM   79 (319)
Q Consensus        11 ~~~~~~l~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~--~~~   79 (319)
                      .-...+++.++++.+...       ......++.++++.+...+..+  ..+..+++|++|++++|.+++  ++.  +..
T Consensus        50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  127 (455)
T 3v47_A           50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET--GAFNGLANLEVLTLTQCNLDGAVLSGNFFKP  127 (455)
T ss_dssp             TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT--TTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred             hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh--hhccCcccCCEEeCCCCCCCccccCcccccC
Confidence            345578889998877442       3444568888888887766544  678899999999999999986  333  888


Q ss_pred             CCCCCEEEccCCCccCc-c-C-CCCCCCCcEEEccCCCCcccc--CCC--------------------------------
Q psy14728         80 LTTLKELELYDNQLTVI-E-N-LDTLINLEILDLSFNRIREIK--GLD--------------------------------  122 (319)
Q Consensus        80 ~~~L~~L~l~~~~~~~~-~-~-~~~l~~L~~L~l~~~~~~~l~--~~~--------------------------------  122 (319)
                      +++|++|++++|.++.+ + . +.++++|++|++++|.+..++  .+.                                
T Consensus       128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  207 (455)
T 3v47_A          128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN  207 (455)
T ss_dssp             CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred             cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence            99999999999998854 3 2 788999999999999877542  122                                


Q ss_pred             --CCCCccEEEccCCcccccC---------------------------------------CCC--CCCCccEEEccCCcC
Q psy14728        123 --HLANLEKLYLCSNKISKIE---------------------------------------NVD--HLKKLKVLELGDNKI  159 (319)
Q Consensus       123 --~l~~L~~L~l~~~~~~~~~---------------------------------------~~~--~~~~L~~L~l~~~~~  159 (319)
                        .+++|++|++++|.+++..                                       .+.  ..++|++|++++|.+
T Consensus       208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  287 (455)
T 3v47_A          208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI  287 (455)
T ss_dssp             TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred             ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence              3468999999999775310                                       000  136899999999988


Q ss_pred             cCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--cc
Q psy14728        160 RII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NL  231 (319)
Q Consensus       160 ~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~  231 (319)
                      ...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++..++  .+..+++|++|++++|++++++  .+
T Consensus       288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence            633  4578899999999999999886  36889999999999999998763  4788999999999999999873  48


Q ss_pred             CCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCC
Q psy14728        232 LSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDW  272 (319)
Q Consensus       232 ~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~  272 (319)
                      ..+++|++|++++|.++.++.  +..+++|++|++++|+++..
T Consensus       368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            899999999999999998653  78999999999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=8.4e-27  Score=219.45  Aligned_cols=244  Identities=21%  Similarity=0.187  Sum_probs=136.8

Q ss_pred             ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCC---------------------
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN---------------------  113 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~---------------------  113 (319)
                      +..+++|+.|+++++.+..++.+..+++|++|++++|.+..++.+ .+++|++|++++|                     
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~  359 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR  359 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcC
Confidence            566667777777777666666666666666666666666555444 5555555555555                     


Q ss_pred             -CCccc---c-CCCCCCCccEEEccCCcccccC-CCCCCCCccEEEccCCcCcCc---cccCCCCCccEEEcCCCCCccc
Q psy14728        114 -RIREI---K-GLDHLANLEKLYLCSNKISKIE-NVDHLKKLKVLELGDNKIRII---ENLDGLTNLEELYLGKNKISRI  184 (319)
Q Consensus       114 -~~~~l---~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~l~~~  184 (319)
                       .+...   + .+..+++|++|++++|.++.++ .+..+++|++|++++|.+...   ..+..+++|++|++++|.+...
T Consensus       360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (606)
T 3vq2_A          360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID  439 (606)
T ss_dssp             SCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence             44332   1 1333445555555555544443 445555566666655555422   2345556666666666655443


Q ss_pred             --cCCCCCCCCCEEECCCCCCCC--Cc-CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--ccccc
Q psy14728        185 --DNLASLTKLNILSLQCNRLRT--IE-NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAH  255 (319)
Q Consensus       185 --~~l~~~~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~  255 (319)
                        ..+..+++|++|++++|++..  ++ .+..+++|++|++++|.+++++  .+..+++|++|++++|.++.+  ..+..
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence              235555666666666665543  22 2555666666666666665542  255566666666666666553  34556


Q ss_pred             CCCCcEEEcCCCcCCCCcccccccCCC-CCcEEEcCCCcCcCChhhH
Q psy14728        256 LTELQEFWINDNQVSDWNTVNVLENNK-QLQTIYLDRNPVAQDPNYR  301 (319)
Q Consensus       256 ~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~  301 (319)
                      +++|++|++++|+++..+  ..+..++ +|+.|++++|++.+++...
T Consensus       520 l~~L~~L~l~~N~l~~~p--~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIETSK--GILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             CTTCCEEECTTSCCCCEE--SCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             CCcCCEEECCCCcCcccC--HhHhhhcccCcEEEccCCCcccCCccH
Confidence            666666666666666432  2345554 4666666666666655543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=9e-27  Score=216.73  Aligned_cols=123  Identities=20%  Similarity=0.179  Sum_probs=95.5

Q ss_pred             CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccc--cccCCCCCEE
Q psy14728         15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIEN--IHMLTTLKEL   86 (319)
Q Consensus        15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~L~~L   86 (319)
                      .+++.++++.+...      ......++.++++.+...+..+  ..+..+++|++|++++|.+.+++.  ++.+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--hhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence            57888888776543      2344567778888877665443  678889999999999999988753  8889999999


Q ss_pred             EccCCCccCc---cCCCCCCCCcEEEccCCC-Ccccc--CCCCCCCccEEEccCCcccc
Q psy14728         87 ELYDNQLTVI---ENLDTLINLEILDLSFNR-IREIK--GLDHLANLEKLYLCSNKISK  139 (319)
Q Consensus        87 ~l~~~~~~~~---~~~~~l~~L~~L~l~~~~-~~~l~--~~~~l~~L~~L~l~~~~~~~  139 (319)
                      ++++|.++.+   +.++++++|++|++++|. +..++  .+..+++|++|++++|.+++
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            9999988743   458889999999999987 55665  57788888888888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=220.96  Aligned_cols=128  Identities=19%  Similarity=0.178  Sum_probs=70.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCc---CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCC--Cc-cccccCCC
Q psy14728        187 LASLTKLNILSLQCNRLRTIE---NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKIS--II-QNIAHLTE  258 (319)
Q Consensus       187 l~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~--~~-~~l~~~~~  258 (319)
                      +..+++|++|++++|.+...+   .+..+++|+.|++++|.+.+..  .+..+++|++|++++|.+.  .+ ..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            344455555555555444321   2445556666666666555432  2455566666666666554  12 34556666


Q ss_pred             CcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728        259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       259 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~  318 (319)
                      |++|++++|++++. .+..+..+++|+.|++++|.++..+..   .+..+++|+.|++++
T Consensus       472 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          472 LTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQLKSVPDG---IFDRLTSLQKIWLHT  527 (570)
T ss_dssp             CCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccccC-ChhhhhcccCCCEEeCCCCcCCCCCHH---HhhcccCCcEEEecC
Confidence            66666666666652 234555666666666666666655441   245566666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=5.7e-26  Score=206.09  Aligned_cols=224  Identities=23%  Similarity=0.334  Sum_probs=129.2

Q ss_pred             ccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728         59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~  138 (319)
                      ++|++|++++|.+++++.+..+++|++|++++|+++.++..  ..+|++|++++|.+..+|++..+++|++|++++|.++
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence            45666666666666665566666666666666666544321  2366666666666666666666666666666666665


Q ss_pred             ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeE
Q psy14728        139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL  218 (319)
Q Consensus       139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  218 (319)
                      +++..  .++|++|++++|.+..++.+..+++|++|++++|.+.+++..  .++|+.|++++|++..++..  +++|+.|
T Consensus       209 ~l~~~--~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~--~~~L~~L  282 (454)
T 1jl5_A          209 KLPDL--PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL--PQSLTFL  282 (454)
T ss_dssp             SCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC--CTTCCEE
T ss_pred             cCCCC--cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc--cCcCCEE
Confidence            54432  245666666666655555555666666666666665554332  24555555555555544321  2445555


Q ss_pred             eccCCcCcCccccC-----------------C-CCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccC
Q psy14728        219 YLSENGLTTIENLL-----------------S-NEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLEN  280 (319)
Q Consensus       219 ~l~~~~~~~~~~~~-----------------~-~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  280 (319)
                      ++++|.+++++.+.                 . +++|++|++++|.+++++..  +++|++|++++|+++..+.     .
T Consensus       283 ~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~lp~-----~  355 (454)
T 1jl5_A          283 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-----L  355 (454)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCC-----C
T ss_pred             ECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc--CCcCCEEECCCCccccccc-----h
Confidence            55555444432110                 1 13666666666666655432  4677777777777775332     3


Q ss_pred             CCCCcEEEcCCCcCcCC
Q psy14728        281 NKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       281 ~~~L~~L~l~~n~~~~~  297 (319)
                      +++|+.|++++|+++..
T Consensus       356 l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             CTTCCEEECCSSCCSSC
T ss_pred             hhhccEEECCCCCCCcC
Confidence            57777888888777763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.2e-26  Score=202.54  Aligned_cols=255  Identities=25%  Similarity=0.286  Sum_probs=208.3

Q ss_pred             cccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728         58 EVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC  133 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~  133 (319)
                      .++++.|++++|.+..++  .+..+++|++|++++|+++.+  ..+..+++|++|++++|.+..+|.-.. ++|++|+++
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~  131 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIH  131 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECC
Confidence            368999999999999774  488999999999999999854  458999999999999999998874322 899999999


Q ss_pred             CCcccccC--CCCCCCCccEEEccCCcCcC----ccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728        134 SNKISKIE--NVDHLKKLKVLELGDNKIRI----IENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE  207 (319)
Q Consensus       134 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~  207 (319)
                      +|.++.++  .+..+++|++|++++|.+..    ...+..+ +|++|++++|.+..++... .++|++|++++|.++.++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccC
Confidence            99998876  37889999999999998852    2345555 9999999999988875322 278999999999998764


Q ss_pred             --CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccC--
Q psy14728        208 --NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLEN--  280 (319)
Q Consensus       208 --~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~--  280 (319)
                        .+..+++|++|++++|.+++++  .+..+++|++|++++|.++.++ ++..+++|++|++++|++++.+. ..+..  
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~  288 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV-NDFCPVG  288 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCT-TSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccCh-hHccccc
Confidence              4889999999999999999875  3888999999999999998765 48899999999999999998543 33332  


Q ss_pred             ----CCCCcEEEcCCCcCc--CChhhHHHHHHhCCceEEEecccC
Q psy14728        281 ----NKQLQTIYLDRNPVA--QDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       281 ----~~~L~~L~l~~n~~~--~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                          .+.|+.|++++|++.  ..+.   ..+..++.|+.++++++
T Consensus       289 ~~~~~~~l~~L~l~~N~~~~~~~~~---~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          289 FGVKRAYYNGISLFNNPVPYWEVQP---ATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCSSSCCBSEEECCSSSSCGGGSCG---GGGTTBCCSTTEEC---
T ss_pred             cccccccccceEeecCcccccccCc---ccccccchhhhhhcccc
Confidence                467899999999987  3333   24677999999988764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.3e-26  Score=200.53  Aligned_cols=256  Identities=23%  Similarity=0.311  Sum_probs=210.7

Q ss_pred             cccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728         58 EVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC  133 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~  133 (319)
                      .++++.|+++++.+++++  .+..+++|++|++++|.++.+  ..+..+++|++|++++|.++.+|.-. .++|++|+++
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~  129 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVH  129 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECC
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEECC
Confidence            368999999999999886  488999999999999999865  45899999999999999999887422 2799999999


Q ss_pred             CCcccccC--CCCCCCCccEEEccCCcCcC----ccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCC-
Q psy14728        134 SNKISKIE--NVDHLKKLKVLELGDNKIRI----IENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTI-  206 (319)
Q Consensus       134 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~-  206 (319)
                      +|.++.++  .+..+++|++|++++|.+..    ...+..+++|++|++++|.+..++... .++|++|++++|+++.+ 
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEEC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccC
Confidence            99998875  47889999999999998852    345788999999999999988875432 28899999999999875 


Q ss_pred             -cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCccccccc---
Q psy14728        207 -ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLE---  279 (319)
Q Consensus       207 -~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~---  279 (319)
                       ..+..+++|++|++++|.+++++  .+..+++|++|++++|.++.++ ++..+++|++|++++|++++.+. ..+.   
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~-~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS-NDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT-TSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh-hhcCCcc
Confidence             34889999999999999999875  4888999999999999998774 58899999999999999988543 3332   


Q ss_pred             ---CCCCCcEEEcCCCcCcC--ChhhHHHHHHhCCceEEEecccC
Q psy14728        280 ---NNKQLQTIYLDRNPVAQ--DPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       280 ---~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                         ..+.++.|++++|++..  .+.   ..+..++.++.++++++
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~~i~~---~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYWEIQP---STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGGSCG---GGGTTCCCGGGEEC---
T ss_pred             cccccccccceEeecCcccccccCc---cccccccceeEEEeccc
Confidence               24788999999999874  222   23567888888888753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=214.62  Aligned_cols=100  Identities=18%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             CceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEc
Q psy14728         15 DNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELEL   88 (319)
Q Consensus        15 ~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l   88 (319)
                      .+++.++++.+....      .....++.++++.+...+..+  ..+..+++|++|++++|.++.++.. .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI--SVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG--GGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh--HHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence            778888888776542      233457777777776665433  6788888899999998888887765 7888888888


Q ss_pred             cCCCccCc---cCCCCCCCCcEEEccCCCCcc
Q psy14728         89 YDNQLTVI---ENLDTLINLEILDLSFNRIRE  117 (319)
Q Consensus        89 ~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~  117 (319)
                      ++|.++.+   ..++.+++|++|++++|.+..
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch
Confidence            88888742   457888888888888877653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=3.2e-26  Score=207.77  Aligned_cols=250  Identities=20%  Similarity=0.237  Sum_probs=117.0

Q ss_pred             CccccCCCceEEEEEeeecc-----ccccccccCCCCcchhhhhccCchhhccccccc-------------ceEEEecCC
Q psy14728          8 NTDEVDNDNLVTLNVEAVEN-----THGNQMSLDNPDEESEAETTESKAEDEESKEVC-------------IERLLLRWN   69 (319)
Q Consensus         8 ~~~~~~~~~l~~l~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~   69 (319)
                      +.+.+....++.+.++.+..     ..++...++.++++.+...+..+  ..+..+++             ++.|+++++
T Consensus         4 ~p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            4 NPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP--PGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSC--TTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             cccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCC--cccccchhcchhhhhhhhccCCCEEEecCC
Confidence            34455556666655544432     34445556677777777766655  44555554             377777777


Q ss_pred             cccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCc
Q psy14728         70 LIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL  149 (319)
Q Consensus        70 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L  149 (319)
                      .++++|.+  .++|++|++++|.++.++.  .+++|++|++++|.+..++.+.  ++|++|++++|.+++++.+..+++|
T Consensus        82 ~l~~lp~~--~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~~~~l~~L  155 (454)
T 1jl5_A           82 GLSSLPEL--PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFL  155 (454)
T ss_dssp             CCSCCCSC--CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             ccccCCCC--cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcccCCCCCC
Confidence            77766553  3566666666666655432  1245555555555544443321  3455555555555444444445555


Q ss_pred             cEEEccCCcC--------------------cCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCC
Q psy14728        150 KVLELGDNKI--------------------RIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL  209 (319)
Q Consensus       150 ~~L~l~~~~~--------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~  209 (319)
                      ++|++++|.+                    ..++.+..+++|++|++++|.+.+++...  ++|++|++++|.+..+|.+
T Consensus       156 ~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~n~l~~lp~~  233 (454)
T 1jl5_A          156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVAGNNILEELPEL  233 (454)
T ss_dssp             CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCSSCCCC
T ss_pred             CEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc--CcccEEECcCCcCCccccc
Confidence            5555555444                    43334444444555555444444432221  3455555555555444445


Q ss_pred             cCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728        210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       210 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      ..+++|++|++++|+++++|..  +++|++|++++|.+++++..  +++|++|++++|++++
T Consensus       234 ~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          234 QNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             TTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred             CCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence            5555555555555555554431  24555555555555544322  2455555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=7.4e-27  Score=225.34  Aligned_cols=299  Identities=25%  Similarity=0.268  Sum_probs=183.1

Q ss_pred             CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCccc-Ccc-ccccCC-CCCE
Q psy14728         15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIK-KIE-NIHMLT-TLKE   85 (319)
Q Consensus        15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~-~~~~~~-~L~~   85 (319)
                      .+++.++++.+...      ......++.++++.+...+..+ ...+..+++|++|++++|.+. .++ .+..++ +|++
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            56677776655432      3344456666777666655444 123666777777777777665 333 233333 4444


Q ss_pred             EEccCC--------------------------CccC--ccCCCCCCCCcEEEccCCCCcc-cc-CCCCCCCccEEEccCC
Q psy14728         86 LELYDN--------------------------QLTV--IENLDTLINLEILDLSFNRIRE-IK-GLDHLANLEKLYLCSN  135 (319)
Q Consensus        86 L~l~~~--------------------------~~~~--~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~  135 (319)
                      |++++|                          .++.  +..+.++++|++|++++|.+.. +| .+..+++|+.|++++|
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence            444444                          4431  1234555555555555555542 22 3455556666666666


Q ss_pred             ccccc-C-CCCCCCCccEEEccCCcCc--CccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC-Cc-
Q psy14728        136 KISKI-E-NVDHLKKLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT-IE-  207 (319)
Q Consensus       136 ~~~~~-~-~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~-~~-  207 (319)
                      .+++. + .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|++.+ +| 
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            55532 2 4555666666666666664  223456666777777777766543  345666777777777777653 33 


Q ss_pred             CCcCCCCCCeEeccCCcCcC-cc---------------------------------------------------------
Q psy14728        208 NLEALTNLTQLYLSENGLTT-IE---------------------------------------------------------  229 (319)
Q Consensus       208 ~~~~~~~L~~L~l~~~~~~~-~~---------------------------------------------------------  229 (319)
                      .+..+++|+.|++++|.+++ +|                                                         
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            36677777777777776542 11                                                         


Q ss_pred             --------------ccCCCCCccEEEccCCCCCC-c-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCc
Q psy14728        230 --------------NLLSNEKLETLDVAYNKISI-I-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP  293 (319)
Q Consensus       230 --------------~~~~~~~L~~L~l~~~~~~~-~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  293 (319)
                                    .+..+++|+.|++++|.+++ + ..++.+++|+.|++++|++++ .++..++.+++|+.|++++|.
T Consensus       613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCc
Confidence                          12234567788888888764 3 457788888888888888887 455777888888888888888


Q ss_pred             CcC-ChhhHHHHHHhCCceEEEecccC
Q psy14728        294 VAQ-DPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       294 ~~~-~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ++. +|.    .+..++.|+.||++++
T Consensus       692 l~g~ip~----~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          692 LDGRIPQ----AMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CEECCCG----GGGGCCCCSEEECCSS
T ss_pred             ccCcCCh----HHhCCCCCCEEECcCC
Confidence            884 344    3577888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=8.1e-26  Score=204.73  Aligned_cols=242  Identities=29%  Similarity=0.394  Sum_probs=209.5

Q ss_pred             cceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCC
Q psy14728         60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSN  135 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~  135 (319)
                      ..+.++..+..++.+|. .-.++++.|++++|+++.+  ..+.++++|++|++++|.+..++  .+..+++|++|++++|
T Consensus        44 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            46788888888888874 2237899999999999854  45899999999999999998875  5888999999999999


Q ss_pred             cccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCC-Cccc--cCCCCCCCCCEEECCCCCCCCCcC
Q psy14728        136 KISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNK-ISRI--DNLASLTKLNILSLQCNRLRTIEN  208 (319)
Q Consensus       136 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~-l~~~--~~l~~~~~L~~L~l~~~~~~~~~~  208 (319)
                      .++.++  .+..+++|++|++++|.+..++  .+..+++|++|+++++. +..+  ..+..+++|++|++++|+++.++.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  202 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN  202 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence            999876  5889999999999999987554  47889999999999854 5444  358889999999999999999999


Q ss_pred             CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCC
Q psy14728        209 LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL  284 (319)
Q Consensus       209 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  284 (319)
                      +..+++|++|++++|.+++++  .+..+++|++|++++|.++.+  ..+..+++|++|++++|+++..+ ...+..+++|
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  281 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHL  281 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTC
T ss_pred             cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHhccccCC
Confidence            999999999999999999874  488999999999999999875  45889999999999999999854 3677889999


Q ss_pred             cEEEcCCCcCcCChhhHHH
Q psy14728        285 QTIYLDRNPVAQDPNYRRK  303 (319)
Q Consensus       285 ~~L~l~~n~~~~~~~~~~~  303 (319)
                      +.|++++|++.+++...+.
T Consensus       282 ~~L~L~~Np~~CdC~l~~l  300 (440)
T 3zyj_A          282 ERIHLHHNPWNCNCDILWL  300 (440)
T ss_dssp             CEEECCSSCEECSSTTHHH
T ss_pred             CEEEcCCCCccCCCCchHH
Confidence            9999999999999887654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.2e-26  Score=224.00  Aligned_cols=302  Identities=22%  Similarity=0.228  Sum_probs=217.8

Q ss_pred             CCceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccC-cc---ccccCCCC
Q psy14728         14 NDNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK-IE---NIHMLTTL   83 (319)
Q Consensus        14 ~~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~---~~~~~~~L   83 (319)
                      ...++.++++......      .....+..+++......+..+....+..+++|++|++++|.+.+ ++   .++.+++|
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            3567777776433211      11223444555555444444444678889999999999998874 33   57889999


Q ss_pred             CEEEccCCCccCc--cC-CCCCCCCcEEEccCCCCcccc--C---CCCCCCccEEEccCCcccccCCCCCCCCccEEEcc
Q psy14728         84 KELELYDNQLTVI--EN-LDTLINLEILDLSFNRIREIK--G---LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG  155 (319)
Q Consensus        84 ~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~~~~~~l~--~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  155 (319)
                      ++|++++|.++..  .. +.++++|++|++++|.+....  .   +..+++|++|++++|.+++...+..+++|++|+++
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls  208 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS  208 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECC
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECc
Confidence            9999999988632  22 378899999999999888654  2   67888999999999988877666888999999999


Q ss_pred             CCcCcC-ccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCc-Cccc-
Q psy14728        156 DNKIRI-IENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLT-TIEN-  230 (319)
Q Consensus       156 ~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~-  230 (319)
                      +|.+.. ++.+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+......+++|++|++++|.++ .+|. 
T Consensus       209 ~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~  288 (768)
T 3rgz_A          209 SNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF  288 (768)
T ss_dssp             SSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCC
T ss_pred             CCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHH
Confidence            888763 44578889999999999888754  467888899999999988865322237888889999888887 4453 


Q ss_pred             cCC-CCCccEEEccCCCCCC--ccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCc-CChhhHHHHHH
Q psy14728        231 LLS-NEKLETLDVAYNKISI--IQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA-QDPNYRRKIKL  306 (319)
Q Consensus       231 ~~~-~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~  306 (319)
                      +.. +++|++|++++|.+++  +..+..+++|++|++++|.+.+......+..+++|+.|++++|.+. ..|..    +.
T Consensus       289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~----l~  364 (768)
T 3rgz_A          289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES----LT  364 (768)
T ss_dssp             SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT----HH
T ss_pred             HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH----HH
Confidence            434 4888888988888763  3457888888888888888874222244778888888888888887 44443    23


Q ss_pred             hCC-ceEEEecccC
Q psy14728        307 VCP-WIVQIDATLA  319 (319)
Q Consensus       307 ~~~-~L~~l~~~~C  319 (319)
                      .++ +|+.|+++.|
T Consensus       365 ~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          365 NLSASLLTLDLSSN  378 (768)
T ss_dssp             HHTTTCSEEECCSS
T ss_pred             hhhcCCcEEEccCC
Confidence            333 6666666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=2.5e-26  Score=214.37  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             CceEEEEEeeecccc------ccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEc
Q psy14728         15 DNLVTLNVEAVENTH------GNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELEL   88 (319)
Q Consensus        15 ~~l~~l~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l   88 (319)
                      .+++.++++.+....      .....++.++++.+...+..+  ..+..+++|++|++++|.++.++.. .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH--HHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEEC
Confidence            455555555443321      222234445555554443322  4455566666666666666555543 5566666666


Q ss_pred             cCCCccCc---cCCCCCCCCcEEEccCCCCc
Q psy14728         89 YDNQLTVI---ENLDTLINLEILDLSFNRIR  116 (319)
Q Consensus        89 ~~~~~~~~---~~~~~l~~L~~L~l~~~~~~  116 (319)
                      ++|+++.+   ..++++++|++|++++|.+.
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccc
Confidence            66655532   23556666666666666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.5e-25  Score=209.19  Aligned_cols=102  Identities=22%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEcc
Q psy14728         34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLS  111 (319)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  111 (319)
                      .++.++++.+...+..+  ..+..+++|++|++++|.+++++  .+..+++|++|++++|+++.++.. .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRM--PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCG--GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccCh--hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence            45556666666554433  56677777777777777777653  367777777777777777655544 67777777777


Q ss_pred             CCCCcccc---CCCCCCCccEEEccCCccc
Q psy14728        112 FNRIREIK---GLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus       112 ~~~~~~l~---~~~~l~~L~~L~l~~~~~~  138 (319)
                      +|.+..++   .+..+++|++|++++|.++
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccc
Confidence            77776643   3566666666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.7e-25  Score=203.37  Aligned_cols=242  Identities=25%  Similarity=0.355  Sum_probs=209.2

Q ss_pred             cceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCC
Q psy14728         60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSN  135 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~  135 (319)
                      ..+.++.++..++.+|. .-.+++++|++++|.++.+  ..+.++++|++|++++|.+..++  .+..+++|++|++++|
T Consensus        55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            35788888888888874 2237899999999999854  45899999999999999999875  5888999999999999


Q ss_pred             cccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCC-CCccc--cCCCCCCCCCEEECCCCCCCCCcC
Q psy14728        136 KISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKN-KISRI--DNLASLTKLNILSLQCNRLRTIEN  208 (319)
Q Consensus       136 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~-~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~  208 (319)
                      .++.++  .+..+++|++|++++|.+..++  .+..+++|++|+++++ .+..+  ..+..+++|+.|++++|+++.++.
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~  213 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN  213 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence            999876  4788999999999999987554  4788999999999985 45555  358889999999999999999999


Q ss_pred             CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCC
Q psy14728        209 LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQL  284 (319)
Q Consensus       209 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  284 (319)
                      +..+++|++|++++|.+++++  .+..+++|+.|++++|.++.+  ..+..+++|++|++++|+++..+ ...+..+++|
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  292 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYL  292 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTC
T ss_pred             ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccccCC
Confidence            999999999999999999874  488999999999999999865  45889999999999999999853 3667889999


Q ss_pred             cEEEcCCCcCcCChhhHHH
Q psy14728        285 QTIYLDRNPVAQDPNYRRK  303 (319)
Q Consensus       285 ~~L~l~~n~~~~~~~~~~~  303 (319)
                      +.|++++|++.+++...+.
T Consensus       293 ~~L~L~~Np~~CdC~~~~l  311 (452)
T 3zyi_A          293 VELHLHHNPWNCDCDILWL  311 (452)
T ss_dssp             CEEECCSSCEECSTTTHHH
T ss_pred             CEEEccCCCcCCCCCchHH
Confidence            9999999999999887553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=213.73  Aligned_cols=104  Identities=20%  Similarity=0.226  Sum_probs=86.5

Q ss_pred             cccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEc
Q psy14728         33 MSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDL  110 (319)
Q Consensus        33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l  110 (319)
                      ..++.++++.+...+..+  ..+..+++|++|++++|.++++.  .+..+++|++|++++|+++.++.. .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWT--SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCH--HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccCh--hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEec
Confidence            457777888887765444  67889999999999999999873  589999999999999999877655 8999999999


Q ss_pred             cCCCCccc--c-CCCCCCCccEEEccCCcccc
Q psy14728        111 SFNRIREI--K-GLDHLANLEKLYLCSNKISK  139 (319)
Q Consensus       111 ~~~~~~~l--~-~~~~l~~L~~L~l~~~~~~~  139 (319)
                      ++|.+..+  | .+..+++|++|++++|.++.
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch
Confidence            99999864  3 57888899999998887654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=2.4e-25  Score=212.23  Aligned_cols=195  Identities=23%  Similarity=0.291  Sum_probs=126.0

Q ss_pred             CCCCCCccEEEccCCcccc-cC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc----cCCCCCC
Q psy14728        121 LDHLANLEKLYLCSNKISK-IE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI----DNLASLT  191 (319)
Q Consensus       121 ~~~l~~L~~L~l~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~----~~l~~~~  191 (319)
                      +..+++|+.|++++|.+++ ++  .+..+++|++|++++|.+...  ..+..+++|+.|++.+|.+...    ..+..++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            3444455555555555432 11  344455555555555544322  2344455555555555554322    3466677


Q ss_pred             CCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc----------ccCCCCCccEEEccCCCCCCcc--ccccCC
Q psy14728        192 KLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE----------NLLSNEKLETLDVAYNKISIIQ--NIAHLT  257 (319)
Q Consensus       192 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~~~~--~l~~~~  257 (319)
                      +|+.|++++|+++.++.  +..+++|+.|++++|.++.++          .+..+++|+.|++++|.++.++  .+.+++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            78888888888777643  677788888888888777542          1567788888888888887765  377888


Q ss_pred             CCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHH-hCCceEEEecccC
Q psy14728        258 ELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKL-VCPWIVQIDATLA  319 (319)
Q Consensus       258 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~L~~l~~~~C  319 (319)
                      +|++|++++|+++..+ ...+..+++|+.|++++|.++..+..   .+. .+++|+.++++++
T Consensus       561 ~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVEKK---VFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCCHH---HHHHHHTTCSEEECTTC
T ss_pred             CcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccChh---HhcccccccCEEEccCC
Confidence            8888888888888643 35567788888888888888877662   233 6788888887653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.1e-26  Score=215.14  Aligned_cols=123  Identities=24%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEE
Q psy14728         15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKEL   86 (319)
Q Consensus        15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L   86 (319)
                      .+++.++++.+...      ......++.++++.+...+..+  ..+..+++|++|++++|.++.++  .+..+++|++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc--ccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            45666776665432      2334456667777665544332  56777778888888887777654  36777777777


Q ss_pred             EccCCCccCccC--CCCCCCCcEEEccCCCCcc--cc-CCCCCCCccEEEccCCcccc
Q psy14728         87 ELYDNQLTVIEN--LDTLINLEILDLSFNRIRE--IK-GLDHLANLEKLYLCSNKISK  139 (319)
Q Consensus        87 ~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~~~~~  139 (319)
                      ++++|+++.++.  ++++++|++|++++|.+..  +| .+..+++|++|++++|.++.
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            777777765443  6777777777777777765  33 36667777777777776544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3.7e-25  Score=207.00  Aligned_cols=219  Identities=21%  Similarity=0.237  Sum_probs=107.6

Q ss_pred             cccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcc
Q psy14728         58 EVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI  137 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~  137 (319)
                      +++|++|++++|.++.++.  .+++|++|++++|.++.++.  .+++|++|++++|.++.+|..  +++|++|++++|.+
T Consensus        80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l  153 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQL  153 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCC
T ss_pred             CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcC
Confidence            3444444444444444433  33444444444444443332  334444444444444444321  24444444444444


Q ss_pred             cccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCe
Q psy14728        138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ  217 (319)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~  217 (319)
                      +.++.  .+++|+.|++++|.+..++  ..+++|+.|++++|.+..++..  .++|+.|++++|.++.++.  .+++|+.
T Consensus       154 ~~l~~--~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~--~~~~L~~  225 (622)
T 3g06_A          154 ASLPA--LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA--LPSGLKE  225 (622)
T ss_dssp             SCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCC--CCTTCCE
T ss_pred             CCcCC--ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCC--CCCCCCE
Confidence            44332  2334444444444444333  2334555555555555544321  3455555555555554442  2355666


Q ss_pred             EeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcC
Q psy14728        218 LYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ  296 (319)
Q Consensus       218 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  296 (319)
                      |++++|.++++|  ..+++|+.|++++|.++.++.  .+++|++|++++|.++..  +..+..+++|+.|++++|++..
T Consensus       226 L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l--p~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          226 LIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             EECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC--CGGGGGSCTTCEEECCSCCCCH
T ss_pred             EEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC--CHHHhhccccCEEEecCCCCCC
Confidence            666666666555  344556666666666665544  455666666666666642  2445566666666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=7.2e-26  Score=195.32  Aligned_cols=238  Identities=21%  Similarity=0.221  Sum_probs=178.3

Q ss_pred             eEEEecCCcccCccccccCCCCCEEEccCCCccCccC--CCCCCCCcEEEccCCCCccc----cCCCCCCCccEEEccCC
Q psy14728         62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI----KGLDHLANLEKLYLCSN  135 (319)
Q Consensus        62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l----~~~~~l~~L~~L~l~~~  135 (319)
                      +.++++++.++.+|. ...++|++|++++|+++.++.  +.++++|++|++++|.+..+    ..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            456777777776664 223677788888777775543  67777888888887777644    23445677888888887


Q ss_pred             cccccC-CCCCCCCccEEEccCCcCcCcc---ccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC--C-
Q psy14728        136 KISKIE-NVDHLKKLKVLELGDNKIRIIE---NLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT--I-  206 (319)
Q Consensus       136 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~---~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~--~-  206 (319)
                      .++.++ .+..+++|++|++++|.+....   .+..+++|++|++++|.+...  ..+..+++|++|++++|.+..  + 
T Consensus        89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            777654 4667778888888877775442   467778888888888877654  346778888888888888765  3 


Q ss_pred             cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCC
Q psy14728        207 ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNK  282 (319)
Q Consensus       207 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  282 (319)
                      ..+..+++|++|++++|.+++++  .+..+++|++|++++|.++.++  .+..+++|++|++++|++++. .+..+..++
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~  247 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFP  247 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-SSSSCCCCC
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-CHHHHHhhh
Confidence            34778889999999999988763  3778889999999999988754  477889999999999999884 335666774


Q ss_pred             -CCcEEEcCCCcCcCChhhH
Q psy14728        283 -QLQTIYLDRNPVAQDPNYR  301 (319)
Q Consensus       283 -~L~~L~l~~n~~~~~~~~~  301 (319)
                       +|+.|++++|++.+++...
T Consensus       248 ~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          248 SSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             TTCCEEECTTCCEECSGGGH
T ss_pred             ccCCEEEccCCCeecccChH
Confidence             8999999999999887754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=3.1e-25  Score=211.54  Aligned_cols=279  Identities=28%  Similarity=0.322  Sum_probs=188.5

Q ss_pred             cCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCcc------Ccc-----CCCC
Q psy14728         35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLT------VIE-----NLDT  101 (319)
Q Consensus        35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~------~~~-----~~~~  101 (319)
                      ++.++++.+...+..+  ..+..+++|++|++++|.+.++.  .+..+++|++|+++++...      .++     .+..
T Consensus       250 L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             CCEEECTTSCCCEECT--TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCEEECCCCCcCccCc--ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence            5555555555443332  45666677777777776666442  2455555555555543221      111     2444


Q ss_pred             CCCCcEEEccCCCCcccc--CCCCCCC----------------------------ccEEEccCCcccccC--CCCCCCCc
Q psy14728        102 LINLEILDLSFNRIREIK--GLDHLAN----------------------------LEKLYLCSNKISKIE--NVDHLKKL  149 (319)
Q Consensus       102 l~~L~~L~l~~~~~~~l~--~~~~l~~----------------------------L~~L~l~~~~~~~~~--~~~~~~~L  149 (319)
                      +++|++|++++|.+..++  .+..+++                            |+.|++++|.++.+.  .+..+++|
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            555555555555554432  1334444                            444444555554432  46667777


Q ss_pred             cEEEccCCcCcC-c--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCC---Cc-CCcCCCCCCeEec
Q psy14728        150 KVLELGDNKIRI-I--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRT---IE-NLEALTNLTQLYL  220 (319)
Q Consensus       150 ~~L~l~~~~~~~-~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~---~~-~~~~~~~L~~L~l  220 (319)
                      ++|++++|.+.. +  ..+.++++|++|++++|.+...  ..+..+++|+.|++++|.+..   .| .+..+++|+.|++
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            788877777642 2  3566777888888888776654  356677888888888887653   22 4778899999999


Q ss_pred             cCCcCcCccc--cCCCCCccEEEccCCCCCCcc----------ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEE
Q psy14728        221 SENGLTTIEN--LLSNEKLETLDVAYNKISIIQ----------NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIY  288 (319)
Q Consensus       221 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~----------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  288 (319)
                      ++|++++++.  +..+++|+.|++++|.++.++          .+.++++|++|++++|+++..+ ...+.++++|+.|+
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIID  566 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC-HHHcccccCcceeE
Confidence            9999998764  788899999999999887541          2678899999999999998643 25688999999999


Q ss_pred             cCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        289 LDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       289 l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      +++|.++..+..   .+..++.|+.|+++++
T Consensus       567 Ls~N~l~~l~~~---~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          567 LGLNNLNTLPAS---VFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCSSCCCCCCTT---TTTTCTTCCEEECTTS
T ss_pred             CCCCCCCcCCHh---HhCCCCCCCEEECCCC
Confidence            999999988773   4678899999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=9.7e-26  Score=219.66  Aligned_cols=235  Identities=24%  Similarity=0.261  Sum_probs=139.7

Q ss_pred             CceEEEEEeeeccc------cccccccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-c-ccccCCCCCEE
Q psy14728         15 DNLVTLNVEAVENT------HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-E-NIHMLTTLKEL   86 (319)
Q Consensus        15 ~~l~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~-~~~~~~~L~~L   86 (319)
                      .+++.++++.+...      ..+...|+.++++.+......+ ...+..+++|++|++++|.+..+ + .+..+++|++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            55666666654432      2223345555555553322221 24566666666666666666654 2 35666666666


Q ss_pred             EccCCCccC--ccC--CCCCCCCcEEEccCCCCcccc---CCCCCCCccEEEccCCcccccC------------------
Q psy14728         87 ELYDNQLTV--IEN--LDTLINLEILDLSFNRIREIK---GLDHLANLEKLYLCSNKISKIE------------------  141 (319)
Q Consensus        87 ~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~~~~~~------------------  141 (319)
                      ++++|.++.  ++.  +..+++|++|++++|.+..++   .+..+++|++|++++|.++...                  
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            666666653  222  556666666666666655442   2455556666666555442210                  


Q ss_pred             ----------CCCC------------------------------------------------------------------
Q psy14728        142 ----------NVDH------------------------------------------------------------------  145 (319)
Q Consensus       142 ----------~~~~------------------------------------------------------------------  145 (319)
                                .+..                                                                  
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence                      0000                                                                  


Q ss_pred             --CCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCC--cCCcCCCCCCe
Q psy14728        146 --LKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQ  217 (319)
Q Consensus       146 --~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~  217 (319)
                        .++|+.|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|++++|++..+  ..+..+++|+.
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  342 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY  342 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred             cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence              13455555555544322  2366778888888888887765  3577788888888888887765  24677788888


Q ss_pred             EeccCCcCcCccc--cCCCCCccEEEccCCCCCCc
Q psy14728        218 LYLSENGLTTIEN--LLSNEKLETLDVAYNKISII  250 (319)
Q Consensus       218 L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~  250 (319)
                      |++++|.++.++.  +..+++|+.|++++|.++.+
T Consensus       343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            8888888777653  66777788888877776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=4.1e-25  Score=205.55  Aligned_cols=173  Identities=24%  Similarity=0.288  Sum_probs=109.4

Q ss_pred             CCCccEEEccCCccccc-----CCCCCCCCccEEEccCCcCcCcc----ccCCCCCccEEEcCCCCCcccc-CCCCCCCC
Q psy14728        124 LANLEKLYLCSNKISKI-----ENVDHLKKLKVLELGDNKIRIIE----NLDGLTNLEELYLGKNKISRID-NLASLTKL  193 (319)
Q Consensus       124 l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~-~l~~~~~L  193 (319)
                      +++|+.|++++|.+++.     ..+..+++|++|++++|.+..++    .+..+++|++|++++|.+..++ .+..+++|
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L  412 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM  412 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTC
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccc
Confidence            45555555555555441     12455556666666665554332    2455556666666666555542 34455566


Q ss_pred             CEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q psy14728        194 NILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN  273 (319)
Q Consensus       194 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  273 (319)
                      ++|++++|+++.++. ..+++|++|++++|++++++  ..+++|++|++++|+++.++....+++|++|++++|++++. 
T Consensus       413 ~~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~-  488 (549)
T 2z81_A          413 RFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSV-  488 (549)
T ss_dssp             CEEECTTSCCSCCCT-TSCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCC-
T ss_pred             cEEECCCCCcccccc-hhcCCceEEECCCCChhhhc--ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCc-
Confidence            666666666555432 11246666666666665543  46778888888888888777667788888888888888874 


Q ss_pred             ccccccCCCCCcEEEcCCCcCcCChhh
Q psy14728        274 TVNVLENNKQLQTIYLDRNPVAQDPNY  300 (319)
Q Consensus       274 ~~~~~~~~~~L~~L~l~~n~~~~~~~~  300 (319)
                      .+..+..+++|+.|++++|++.+.+..
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          489 PDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             CTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             CHHHHhcCcccCEEEecCCCccCCCcc
Confidence            335577888888888888888887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.94  E-value=4.8e-26  Score=196.56  Aligned_cols=195  Identities=30%  Similarity=0.407  Sum_probs=133.7

Q ss_pred             ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccC
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS  134 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~  134 (319)
                      ...+++|+.|+++++.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence            44577777777777777777777777777777777777776555777777777777777777766677777777777777


Q ss_pred             CcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCC
Q psy14728        135 NKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTN  214 (319)
Q Consensus       135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  214 (319)
                      |.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.+.+++.+..+++|+.|++++|+++.++.+..+++
T Consensus       117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~  196 (308)
T 1h6u_A          117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN  196 (308)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             CCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCC
Confidence            77776666666777777777777666555566666666666666666665556666666666666666666555666666


Q ss_pred             CCeEeccCCcCcCccccCCCCCccEEEccCCCCCC
Q psy14728        215 LTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI  249 (319)
Q Consensus       215 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  249 (319)
                      |++|++++|++++++.+..+++|+.|++++|.++.
T Consensus       197 L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          197 LIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            66666666666666556666666666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=217.44  Aligned_cols=264  Identities=20%  Similarity=0.244  Sum_probs=176.9

Q ss_pred             cccccCCCCcchhhhhccCchhhcccccccceEEEecCCcc-cCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCC
Q psy14728         31 NQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLI-KKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINL  105 (319)
Q Consensus        31 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L  105 (319)
                      ....++.++++.+...+..+  ..+..+++|++|++++|.. ..++  .+.++++|++|++++|.++.+  +.+.++++|
T Consensus        22 lp~~l~~LdLs~N~i~~i~~--~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECS--SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CCCCcCEEECCCCcCCccCh--hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            33467788898887766544  7799999999999999954 4452  589999999999999999853  569999999


Q ss_pred             cEEEccCCCCcc-cc-C--CCCCCCccEEEccCCcccccC---CCCCCCCccEEEccCCcCcCc--cccCCC--CC----
Q psy14728        106 EILDLSFNRIRE-IK-G--LDHLANLEKLYLCSNKISKIE---NVDHLKKLKVLELGDNKIRII--ENLDGL--TN----  170 (319)
Q Consensus       106 ~~L~l~~~~~~~-l~-~--~~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l~~~--~~----  170 (319)
                      ++|++++|.+.. ++ .  +..+++|++|++++|.++...   .+..+++|++|++++|.+...  ..+..+  ++    
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            999999999986 33 3  889999999999999998753   578999999999999877432  222222  34    


Q ss_pred             --------------------------ccEEEcCCCCCccc--c------------------------------------C
Q psy14728        171 --------------------------LEELYLGKNKISRI--D------------------------------------N  186 (319)
Q Consensus       171 --------------------------L~~L~l~~~~l~~~--~------------------------------------~  186 (319)
                                                |+.|++++|.+...  .                                    .
T Consensus       180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence                                      55555555432210  0                                    0


Q ss_pred             CCC--CCCCCEEECCCCCCCCC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCC
Q psy14728        187 LAS--LTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTE  258 (319)
Q Consensus       187 l~~--~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~  258 (319)
                      +..  .++|+.|++++|.+..+  ..+..+++|+.|++++|.+++++  .+..+++|++|++++|.++.+  ..+..+++
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence            001  13455566666555443  12555666666666666666542  255566666666666666543  24556666


Q ss_pred             CcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC
Q psy14728        259 LQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       259 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  297 (319)
                      |++|++++|.+...+ ...+..+++|+.|++++|.++..
T Consensus       340 L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             CCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCcc
Confidence            666666666665532 23455566666666666666544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.9e-27  Score=203.15  Aligned_cols=216  Identities=23%  Similarity=0.271  Sum_probs=116.1

Q ss_pred             cccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEE
Q psy14728         54 EESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLY  131 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~  131 (319)
                      .+..+++|++|++++|.++.++  .+..+++|++|++++|.++....+..+++|++|++++|.+..++.   .++|++|+
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~  105 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---GPSIETLH  105 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE---CTTCCEEE
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC---CCCcCEEE
Confidence            3445666777777777766654  366677777777777766644446666677777777776665542   25666666


Q ss_pred             ccCCcccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCC
Q psy14728        132 LCSNKISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL  209 (319)
Q Consensus       132 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~  209 (319)
                      +++|.++.++. ..+++|++|++++|.+....  .+..+++|++|++++|.+.+..                    ...+
T Consensus       106 l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------~~~~  164 (317)
T 3o53_A          106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------------------FAEL  164 (317)
T ss_dssp             CCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--------------------GGGG
T ss_pred             CCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--------------------HHHH
Confidence            66666655432 12455555555555554332  2344455555555555544431                    0111


Q ss_pred             -cCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCc-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEE
Q psy14728        210 -EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTI  287 (319)
Q Consensus       210 -~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  287 (319)
                       ..+++|++|++++|.++.++....+++|++|++++|.++.+ +.+..+++|++|++++|+++..  +..+..+++|+.|
T Consensus       165 ~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L  242 (317)
T 3o53_A          165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHF  242 (317)
T ss_dssp             GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEE
T ss_pred             hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--hhHhhcCCCCCEE
Confidence             23445555555555555444444445555555555555443 2344555555555555555532  2334455555555


Q ss_pred             EcCCCcCc
Q psy14728        288 YLDRNPVA  295 (319)
Q Consensus       288 ~l~~n~~~  295 (319)
                      ++++|++.
T Consensus       243 ~l~~N~~~  250 (317)
T 3o53_A          243 DLRGNGFH  250 (317)
T ss_dssp             ECTTCCCB
T ss_pred             EccCCCcc
Confidence            55555555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=2.9e-25  Score=193.53  Aligned_cols=256  Identities=22%  Similarity=0.268  Sum_probs=209.0

Q ss_pred             ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-c-ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEcc
Q psy14728         34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-E-NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLS  111 (319)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~  111 (319)
                      .++.++++.+...+..+  ..+..+++|++|++++|.++++ + .+..+++|++|++++|.++.++.- ..++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKD--GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCT--TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECC
T ss_pred             CCeEEECCCCcCCEeCh--hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECC
Confidence            45666777776655433  5688999999999999999987 3 589999999999999999866542 22899999999


Q ss_pred             CCCCcccc--CCCCCCCccEEEccCCcccc--c--CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc-
Q psy14728        112 FNRIREIK--GLDHLANLEKLYLCSNKISK--I--ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI-  184 (319)
Q Consensus       112 ~~~~~~l~--~~~~l~~L~~L~l~~~~~~~--~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-  184 (319)
                      +|.+..++  .+..+++|+.|++++|.++.  .  ..+..+++|++|++++|.+..++... .++|++|++++|.+.+. 
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEEC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccC
Confidence            99999876  37889999999999999864  2  35788999999999999987665322 28999999999998876 


Q ss_pred             -cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccc--cc----
Q psy14728        185 -DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQN--IA----  254 (319)
Q Consensus       185 -~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--l~----  254 (319)
                       ..+..+++|+.|++++|.+..++  .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.  +.    
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence             46889999999999999998764  47889999999999999999875 8889999999999999987642  32    


Q ss_pred             --cCCCCcEEEcCCCcCCCCccc-ccccCCCCCcEEEcCCCc
Q psy14728        255 --HLTELQEFWINDNQVSDWNTV-NVLENNKQLQTIYLDRNP  293 (319)
Q Consensus       255 --~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~  293 (319)
                        ..++++.+++++|.+..+... ..+..+++++.+++++|+
T Consensus       289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence              347899999999999765443 567888999999999984

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.94  E-value=1.5e-25  Score=193.51  Aligned_cols=213  Identities=26%  Similarity=0.367  Sum_probs=190.4

Q ss_pred             ceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccccc
Q psy14728         61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI  140 (319)
Q Consensus        61 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~  140 (319)
                      +..+.+....+.++.....+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.+
T Consensus        21 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~  100 (308)
T 1h6u_A           21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV  100 (308)
T ss_dssp             HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC
T ss_pred             HHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc
Confidence            33345566677776667789999999999999998888999999999999999999888888999999999999999998


Q ss_pred             CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEec
Q psy14728        141 ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYL  220 (319)
Q Consensus       141 ~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  220 (319)
                      +.+..+++|++|++++|.+..++.+..+++|++|++++|.+..++.+..+++|+.|++++|+++.++.+..+++|+.|++
T Consensus       101 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  180 (308)
T 1h6u_A          101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (308)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence            88999999999999999998887888999999999999999888778899999999999999988877889999999999


Q ss_pred             cCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q psy14728        221 SENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWN  273 (319)
Q Consensus       221 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  273 (319)
                      ++|.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|+++..+
T Consensus       181 ~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCC
T ss_pred             CCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCC
Confidence            99999988888889999999999999998877889999999999999988743

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=1e-24  Score=190.23  Aligned_cols=251  Identities=25%  Similarity=0.339  Sum_probs=209.7

Q ss_pred             ccceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccC
Q psy14728         59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCS  134 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~  134 (319)
                      .+++.++++++.++.+|.- -.++|++|++++|.++.+  ..+.++++|++|++++|.+..++  .+..+++|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            3799999999999988742 247999999999999865  35899999999999999999873  588999999999999


Q ss_pred             CcccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc----cCCCCCCCCCEEECCCCCCCCCcC
Q psy14728        135 NKISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI----DNLASLTKLNILSLQCNRLRTIEN  208 (319)
Q Consensus       135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~----~~l~~~~~L~~L~l~~~~~~~~~~  208 (319)
                      |.++.++.-.. ++|++|++++|.+..++  .+..+++|++|++++|.+...    ..+..+ +|+.|++++|+++.+|.
T Consensus       112 n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~  189 (332)
T 2ft3_A          112 NHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK  189 (332)
T ss_dssp             SCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred             CcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence            99998764322 89999999999998654  378899999999999998642    345556 89999999999998765


Q ss_pred             CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCC
Q psy14728        209 LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQL  284 (319)
Q Consensus       209 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  284 (319)
                       ...++|++|++++|.+++++  .+..+++|++|++++|.++.++  .+..+++|++|++++|+++..  +..+..+++|
T Consensus       190 -~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~l~~l~~L  266 (332)
T 2ft3_A          190 -DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV--PAGLPDLKLL  266 (332)
T ss_dssp             -SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC--CTTGGGCTTC
T ss_pred             -cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec--ChhhhcCccC
Confidence             22389999999999999875  4889999999999999998764  588999999999999999964  3568899999


Q ss_pred             cEEEcCCCcCcCChhhHHHHHH------hCCceEEEeccc
Q psy14728        285 QTIYLDRNPVAQDPNYRRKIKL------VCPWIVQIDATL  318 (319)
Q Consensus       285 ~~L~l~~n~~~~~~~~~~~~~~------~~~~L~~l~~~~  318 (319)
                      +.|++++|+++..+..   .+.      ..+.++.+++++
T Consensus       267 ~~L~l~~N~l~~~~~~---~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVN---DFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             CEEECCSSCCCBCCTT---SSSCSSCCSSSCCBSEEECCS
T ss_pred             CEEECCCCCCCccChh---HccccccccccccccceEeec
Confidence            9999999999987652   111      146788888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=195.94  Aligned_cols=240  Identities=25%  Similarity=0.352  Sum_probs=194.6

Q ss_pred             ccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEc
Q psy14728         59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYL  132 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l  132 (319)
                      ++|++|+++++.++.++.  +..+++|++|++++|+++.+  ..+.++++|++|++++|.++.++.  +..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            589999999999887753  88899999999999988754  348888999999999999888763  778899999999


Q ss_pred             cCCcccccCC---CCCCCCccEEEccCCc-CcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCC
Q psy14728        133 CSNKISKIEN---VDHLKKLKVLELGDNK-IRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLR  204 (319)
Q Consensus       133 ~~~~~~~~~~---~~~~~~L~~L~l~~~~-~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~  204 (319)
                      ++|.++.++.   +..+++|++|++++|. +..+  ..+.++++|++|++++|.+.+.  ..+..+++|++|++++|++.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            9998888754   7788999999998874 4433  3577888999999999888775  46788889999999999887


Q ss_pred             CCcC--CcCCCCCCeEeccCCcCcCccc-----cCCCCCccEEEccCCCCCC------ccccccCCCCcEEEcCCCcCCC
Q psy14728        205 TIEN--LEALTNLTQLYLSENGLTTIEN-----LLSNEKLETLDVAYNKISI------IQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       205 ~~~~--~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~------~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      .++.  +..+++|+.|++++|.+++.+.     ......++.++++++.+++      ++.+..+++|++|++++|+++.
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence            7654  4467899999999998886532     3456778888888888764      2347789999999999999997


Q ss_pred             CcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        272 WNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       272 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      .+. ..+..+++|+.|++++|++.+++.
T Consensus       292 i~~-~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          292 VPD-GIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCH-HHHhcCCCCCEEEeeCCCccCcCC
Confidence            432 446899999999999999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=9.7e-27  Score=201.79  Aligned_cols=228  Identities=22%  Similarity=0.263  Sum_probs=185.4

Q ss_pred             ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCC
Q psy14728         34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFN  113 (319)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~  113 (319)
                      .++.++++.+...+..+  ..+..+++|+.|++++|.+++++.+..+++|++|++++|.++.++   ..++|++|++++|
T Consensus        35 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~~n  109 (317)
T 3o53_A           35 NVKELDLSGNPLSQISA--ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN  109 (317)
T ss_dssp             GCSEEECTTSCCCCCCH--HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred             CCCEEECcCCccCcCCH--HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc---CCCCcCEEECCCC
Confidence            57778888887766543  678999999999999999998777999999999999999988654   3489999999999


Q ss_pred             CCccccCCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCc--ccc-CCCCCccEEEcCCCCCccccCCC
Q psy14728        114 RIREIKGLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENL-DGLTNLEELYLGKNKISRIDNLA  188 (319)
Q Consensus       114 ~~~~l~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~l~~~~~l~  188 (319)
                      .+..++. ..+++|++|++++|.++.++  .+..+++|++|++++|.+...  ..+ ..+++|++|++++|.+..++...
T Consensus       110 ~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  188 (317)
T 3o53_A          110 NISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (317)
T ss_dssp             CCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             ccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence            9988763 23788999999999999874  677899999999999998744  234 46789999999999988877666


Q ss_pred             CCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCC-C-c-cccccCCCCcEEE
Q psy14728        189 SLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKIS-I-I-QNIAHLTELQEFW  263 (319)
Q Consensus       189 ~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~-~-~~l~~~~~L~~L~  263 (319)
                      .+++|++|++++|+++.++ .+..+++|+.|++++|.++.+|. +..+++|+.|++++|.+. . + .++..+++|+.++
T Consensus       189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            7888888888888887763 47777888888888888887764 677788888888888876 2 2 3466777788777


Q ss_pred             cCCC
Q psy14728        264 INDN  267 (319)
Q Consensus       264 l~~n  267 (319)
                      ++++
T Consensus       269 l~~~  272 (317)
T 3o53_A          269 KQTV  272 (317)
T ss_dssp             HHHH
T ss_pred             CCCc
Confidence            7754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=7.4e-24  Score=198.22  Aligned_cols=234  Identities=20%  Similarity=0.256  Sum_probs=204.8

Q ss_pred             ccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728         59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~  138 (319)
                      ++|+.|++++|.++.++.  .+++|++|++++|+++.++.  .+++|++|++++|.++.+|.  .+++|+.|++++|.++
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCS
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCC
Confidence            789999999999999877  68999999999999987765  78999999999999999887  6789999999999999


Q ss_pred             ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeE
Q psy14728        139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQL  218 (319)
Q Consensus       139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  218 (319)
                      .++..  +++|++|++++|.+..++.  ..++|+.|++++|.+..++  ..+++|+.|++++|.++.++.  .+++|+.|
T Consensus       135 ~lp~~--l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L  206 (622)
T 3g06_A          135 SLPVL--PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--LPSELYKL  206 (622)
T ss_dssp             CCCCC--CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEE
T ss_pred             cCCCC--CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--ccchhhEE
Confidence            88753  5999999999999876654  4578999999999998887  567899999999999998765  35899999


Q ss_pred             eccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCCh
Q psy14728        219 YLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP  298 (319)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  298 (319)
                      ++++|.++.++..  +++|+.|++++|.++.++  ..+++|++|++++|.++.++.     .+++|+.|++++|.++..|
T Consensus       207 ~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp  277 (622)
T 3g06_A          207 WAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP  277 (622)
T ss_dssp             ECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC
T ss_pred             ECcCCcccccCCC--CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC
Confidence            9999999988753  588999999999999887  567899999999999997542     6789999999999999888


Q ss_pred             hhHHHHHHhCCceEEEecccC
Q psy14728        299 NYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       299 ~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ..    +..+++|+.|+++++
T Consensus       278 ~~----l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          278 ES----LIHLSSETTVNLEGN  294 (622)
T ss_dssp             GG----GGGSCTTCEEECCSC
T ss_pred             HH----HhhccccCEEEecCC
Confidence            73    678999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=2.7e-24  Score=203.04  Aligned_cols=113  Identities=21%  Similarity=0.222  Sum_probs=83.0

Q ss_pred             CCCCEEECCCCCCCC--Cc-CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEE
Q psy14728        191 TKLNILSLQCNRLRT--IE-NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFW  263 (319)
Q Consensus       191 ~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~  263 (319)
                      +.++.|++++|.+..  .+ .+..+++|+.|++++|++++++  .+..+++|++|++++|+++.++  .+.++++|++|+
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            344444554443221  12 3667788888899888888764  3788889999999999888763  477888999999


Q ss_pred             cCCCcCCCCcccccccCC-CCCcEEEcCCCcCcCChhhHHHH
Q psy14728        264 INDNQVSDWNTVNVLENN-KQLQTIYLDRNPVAQDPNYRRKI  304 (319)
Q Consensus       264 l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~  304 (319)
                      +++|++++. .+..+..+ ++|+.|++++||+.|++...+..
T Consensus       549 Ls~N~l~~~-~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~  589 (635)
T 4g8a_A          549 YSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFACTCEHQSFL  589 (635)
T ss_dssp             CTTSCCCBC-CSSCTTCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             CCCCcCCCC-CHHHHHhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence            999998884 33566666 57999999999999988876543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.3e-25  Score=205.59  Aligned_cols=231  Identities=24%  Similarity=0.289  Sum_probs=157.3

Q ss_pred             cccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728         56 SKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC  133 (319)
Q Consensus        56 ~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~  133 (319)
                      ..+++|+.|++++|.+.+++  .+..+++|++|++++|.++....+..+++|++|++++|.+..++..   ++|+.|+++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~  107 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAA  107 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC---TTCCEEECC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC---CCcCEEECc
Confidence            35668888888888888764  4778888888888888887554478888888888888887776533   678888888


Q ss_pred             CCcccccCCCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCC-CCCCCCEEECCCCCCCCCcC
Q psy14728        134 SNKISKIENVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLA-SLTKLNILSLQCNRLRTIEN  208 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~-~~~~L~~L~l~~~~~~~~~~  208 (319)
                      +|.++.++. ..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+.  ..+. .+++|+.|++++|.++.++.
T Consensus       108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            888777543 2357777777777777643  2456677777777777776654  2333 56677777777777766655


Q ss_pred             CcCCCCCCeEeccCCcCcCcc-ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        209 LEALTNLTQLYLSENGLTTIE-NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       209 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      ...+++|+.|++++|.+++++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.....+..+..++.++.
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~  266 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHH
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcE
Confidence            556677777777777776654 3556666777777777666543 35566667777777776663233344555555555


Q ss_pred             EEcC
Q psy14728        287 IYLD  290 (319)
Q Consensus       287 L~l~  290 (319)
                      ++++
T Consensus       267 l~~~  270 (487)
T 3oja_A          267 VAKQ  270 (487)
T ss_dssp             HHHH
T ss_pred             Eecc
Confidence            5553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=2.8e-25  Score=192.19  Aligned_cols=236  Identities=19%  Similarity=0.218  Sum_probs=198.1

Q ss_pred             ccceEEEecCCcccC---cc-ccccCCCCCEEEccC-CCcc-C-ccCCCCCCCCcEEEccCCCCc-ccc-CCCCCCCccE
Q psy14728         59 VCIERLLLRWNLIKK---IE-NIHMLTTLKELELYD-NQLT-V-IENLDTLINLEILDLSFNRIR-EIK-GLDHLANLEK  129 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~---l~-~~~~~~~L~~L~l~~-~~~~-~-~~~~~~l~~L~~L~l~~~~~~-~l~-~~~~l~~L~~  129 (319)
                      .+++.|+++++.+.+   ++ .+..+++|++|++++ |.+. . ++.+.++++|++|++++|.+. .+| .+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            589999999999985   44 589999999999995 8776 3 345899999999999999998 455 4888999999


Q ss_pred             EEccCCcccc-cC-CCCCCCCccEEEccCCcCc--CccccCCCC-CccEEEcCCCCCccc--cCCCCCCCCCEEECCCCC
Q psy14728        130 LYLCSNKISK-IE-NVDHLKKLKVLELGDNKIR--IIENLDGLT-NLEELYLGKNKISRI--DNLASLTKLNILSLQCNR  202 (319)
Q Consensus       130 L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~--~~~~l~~~~-~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~  202 (319)
                      |++++|.+++ .+ .+..+++|++|++++|.+.  .+..+..++ +|++|++++|.+.+.  ..+..++ |+.|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999999985 44 6888999999999999986  445678887 999999999998743  4566666 9999999999


Q ss_pred             CCCC--cCCcCCCCCCeEeccCCcCcCc-cccCCCCCccEEEccCCCCC-Cc-cccccCCCCcEEEcCCCcCCCCccccc
Q psy14728        203 LRTI--ENLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKIS-II-QNIAHLTELQEFWINDNQVSDWNTVNV  277 (319)
Q Consensus       203 ~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~  277 (319)
                      +...  ..+..+++|+.|++++|.+++. +.+..+++|++|++++|.++ .+ .++..+++|++|++++|++++. .+. 
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~-  286 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQ-  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-CCC-
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-CCC-
Confidence            8753  3478999999999999999864 55788899999999999997 33 5688999999999999999863 333 


Q ss_pred             ccCCCCCcEEEcCCCcCcCC
Q psy14728        278 LENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       278 ~~~~~~L~~L~l~~n~~~~~  297 (319)
                      ...+++|+.+++++|+..+.
T Consensus       287 ~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          287 GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEES
T ss_pred             CccccccChHHhcCCCCccC
Confidence            37889999999999996554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=8.4e-24  Score=191.48  Aligned_cols=213  Identities=28%  Similarity=0.426  Sum_probs=187.2

Q ss_pred             ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEc
Q psy14728         59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYL  132 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l  132 (319)
                      ++++.|++++|.+..++  .+..+++|++|++++|.++.+  ..+.++++|++|++++|.++.++  .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            67999999999999774  589999999999999999855  35899999999999999999887  3888999999999


Q ss_pred             cCCcccccC--CCCCCCCccEEEccCCc-CcCc--cccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728        133 CSNKISKIE--NVDHLKKLKVLELGDNK-IRII--ENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE  207 (319)
Q Consensus       133 ~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~  207 (319)
                      ++|.++.++  .+..+++|++|+++++. +..+  ..+.++++|++|++++|.+..++.+..+++|++|++++|+++.++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence            999999876  58899999999999844 4433  257889999999999999999999999999999999999998753


Q ss_pred             --CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCC
Q psy14728        208 --NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       208 --~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~  271 (319)
                        .+..+++|+.|++++|+++.++  .+..+++|+.|++++|.++.++  .+..+++|++|++++|.+..
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence              4889999999999999999875  3788999999999999999764  37889999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=4.2e-23  Score=176.16  Aligned_cols=216  Identities=23%  Similarity=0.313  Sum_probs=133.4

Q ss_pred             eEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCc-
Q psy14728         62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNK-  136 (319)
Q Consensus        62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~-  136 (319)
                      +.+++++..++.+|. ...++|++|++++|.++.++  .+..+++|++|++++|.+..++  .+..+++|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            566777777776653 23467777777777776443  3667777777777777776653  46666667777776665 


Q ss_pred             ccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--Cc
Q psy14728        137 ISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LE  210 (319)
Q Consensus       137 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~~  210 (319)
                      ++.++  .+..+++|++|++++|.+                      ...  ..+..+++|++|++++|++..++.  +.
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  150 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGL----------------------QELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCC----------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcC----------------------CEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence            55442  344455555555555444                      433  224445555555555555554432  55


Q ss_pred             CCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        211 ALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       211 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      .+++|++|++++|++++++.  +..+++|++|++++|.++.+  ..+..+++|++|++++|++++.+ ...+..+++|+.
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  229 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQY  229 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCE
T ss_pred             cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCE
Confidence            56666666666666665543  56666777777777766643  34666777777777777777632 245667777777


Q ss_pred             EEcCCCcCcCChhhH
Q psy14728        287 IYLDRNPVAQDPNYR  301 (319)
Q Consensus       287 L~l~~n~~~~~~~~~  301 (319)
                      |++++|++.+++...
T Consensus       230 L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          230 LRLNDNPWVCDCRAR  244 (285)
T ss_dssp             EECCSSCEECSGGGH
T ss_pred             EeccCCCccCCCCcH
Confidence            777777777766653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.2e-23  Score=191.01  Aligned_cols=213  Identities=28%  Similarity=0.374  Sum_probs=187.7

Q ss_pred             ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEc
Q psy14728         59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYL  132 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l  132 (319)
                      ++++.|++++|.++.++  .+..+++|++|++++|.++.+  ..+.++++|++|++++|.+..++.  +..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            58999999999999873  589999999999999999855  458999999999999999998873  888999999999


Q ss_pred             cCCcccccC--CCCCCCCccEEEccCC-cCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728        133 CSNKISKIE--NVDHLKKLKVLELGDN-KIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE  207 (319)
Q Consensus       133 ~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~  207 (319)
                      ++|.++.++  .+..+++|++|+++++ .+..++  .+.++++|++|++++|.+.+++.+..+++|+.|++++|++..++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence            999999876  5889999999999984 444333  47889999999999999999999999999999999999998763


Q ss_pred             --CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCC
Q psy14728        208 --NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       208 --~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~  271 (319)
                        .+..+++|+.|++++|+++.++  .+..+++|+.|++++|.++.++  .+..+++|++|++++|.+..
T Consensus       235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence              4889999999999999999874  3888999999999999999764  37889999999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9.6e-25  Score=199.83  Aligned_cols=231  Identities=22%  Similarity=0.285  Sum_probs=194.2

Q ss_pred             ccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEcc
Q psy14728         78 HMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG  155 (319)
Q Consensus        78 ~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  155 (319)
                      ..+++|++|++++|.++.+.  .+..+++|++|++++|.+...+++..+++|++|++++|.+++++..   ++|++|+++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~  107 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG---PSIETLHAA  107 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC---TTCCEEECC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC---CCcCEEECc
Confidence            35569999999999998653  5899999999999999999877799999999999999999987643   899999999


Q ss_pred             CCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCC--cCCc-CCCCCCeEeccCCcCcCccc
Q psy14728        156 DNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLE-ALTNLTQLYLSENGLTTIEN  230 (319)
Q Consensus       156 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~~~  230 (319)
                      +|.+..++. ..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++..  +.+. .+++|++|++++|.+++++.
T Consensus       108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            999876653 3568999999999999886  3578899999999999999874  2344 78999999999999999988


Q ss_pred             cCCCCCccEEEccCCCCCCc-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCC
Q psy14728        231 LLSNEKLETLDVAYNKISII-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCP  309 (319)
Q Consensus       231 ~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  309 (319)
                      ...+++|+.|++++|.++++ +.+..+++|+.|++++|.+++.  +..+..+++|+.|++++|++.+...  ...+..++
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~  262 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQ  262 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCBCHHHH--HHHHTTCH
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCCCCcCcch--HHHHHhCC
Confidence            88899999999999999976 5688999999999999999973  4567889999999999999984422  12344555


Q ss_pred             ceEEEec
Q psy14728        310 WIVQIDA  316 (319)
Q Consensus       310 ~L~~l~~  316 (319)
                      .++.+++
T Consensus       263 ~L~~l~~  269 (487)
T 3oja_A          263 RVQTVAK  269 (487)
T ss_dssp             HHHHHHH
T ss_pred             CCcEEec
Confidence            5554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=1.3e-23  Score=181.11  Aligned_cols=239  Identities=23%  Similarity=0.325  Sum_probs=195.5

Q ss_pred             ccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCc----cCCCCCCCCcEEEccCCCCcccc-CCCCCCCccEEE
Q psy14728         59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVI----ENLDTLINLEILDLSFNRIREIK-GLDHLANLEKLY  131 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~  131 (319)
                      +++++|+++++.++.++.  +..+++|++|++++|.++..    ..+..+++|++|++++|.+..++ .+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            689999999999998874  78999999999999998743    34667899999999999999886 478899999999


Q ss_pred             ccCCcccccC---CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCcc--c-cCCCCCCCCCEEECCCCCC
Q psy14728        132 LCSNKISKIE---NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISR--I-DNLASLTKLNILSLQCNRL  203 (319)
Q Consensus       132 l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~--~-~~l~~~~~L~~L~l~~~~~  203 (319)
                      +++|.++..+   .+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+  . ..+..+++|++|++++|++
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            9999998864   588899999999999988633  357889999999999999876  3 5688899999999999999


Q ss_pred             CCC--cCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccC-CCCcEEEcCCCcCCCCcccc
Q psy14728        204 RTI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHL-TELQEFWINDNQVSDWNTVN  276 (319)
Q Consensus       204 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~-~~L~~L~l~~n~~~~~~~~~  276 (319)
                      +.+  ..+..+++|++|++++|.+++++.  +..+++|+.|++++|.+++.  ..+..+ ++|++|++++|.+.......
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            875  347889999999999999998764  78899999999999999864  357777 49999999999998643221


Q ss_pred             -cccCCCCCcEEEcCCCcCcCC
Q psy14728        277 -VLENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       277 -~~~~~~~L~~L~l~~n~~~~~  297 (319)
                       ....+...+.+.+..+.+.+.
T Consensus       268 ~~~~~l~~~~~~~~~~~~~~C~  289 (306)
T 2z66_A          268 SFLQWIKDQRQLLVEVERMECA  289 (306)
T ss_dssp             HHHHHHHHTGGGBSCGGGCBEE
T ss_pred             HHHHHHHhhhhhhccccccccC
Confidence             122333444455555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.2e-23  Score=183.07  Aligned_cols=228  Identities=18%  Similarity=0.187  Sum_probs=154.8

Q ss_pred             cccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc-CCCCCCCccEEEccC
Q psy14728         58 EVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK-GLDHLANLEKLYLCS  134 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~  134 (319)
                      .++++.|+++++.++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..+| .+..+++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            3567777777777776653 6667777777777777665433 667777777777777776665 466667777777776


Q ss_pred             Ccccc-cC-CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc-cCCCCCCCCCEEECCCCCCCCCc-CCc
Q psy14728        135 NKISK-IE-NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI-DNLASLTKLNILSLQCNRLRTIE-NLE  210 (319)
Q Consensus       135 ~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~  210 (319)
                      |.+.+ ++ .+..      .       .....+.++++|++|++++|.+..+ ..+..+++|++|++++|++..++ .+.
T Consensus       160 n~~~~~~p~~~~~------~-------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~  226 (328)
T 4fcg_A          160 CPELTELPEPLAS------T-------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH  226 (328)
T ss_dssp             ETTCCCCCSCSEE------E-------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred             CCCccccChhHhh------c-------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence            54332 22 1110      0       0011234567777777777777665 34667777888888888777754 467


Q ss_pred             CCCCCCeEeccCCcCcC-cc-ccCCCCCccEEEccCCCCCC-c-cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        211 ALTNLTQLYLSENGLTT-IE-NLLSNEKLETLDVAYNKISI-I-QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       211 ~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~-~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      .+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+ ..+..+..+++++.
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCI  305 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCE
T ss_pred             cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-hccHHHhhccCceE
Confidence            78888888888877664 34 37778888888888877654 3 357888899999999988777 46678888899999


Q ss_pred             EEcCCCcCcCChh
Q psy14728        287 IYLDRNPVAQDPN  299 (319)
Q Consensus       287 L~l~~n~~~~~~~  299 (319)
                      +++..+.+.....
T Consensus       306 l~l~~~~~~~l~~  318 (328)
T 4fcg_A          306 ILVPPHLQAQLDQ  318 (328)
T ss_dssp             EECCGGGSCC---
T ss_pred             EeCCHHHHHHHhh
Confidence            9888876665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=7.4e-24  Score=180.87  Aligned_cols=190  Identities=28%  Similarity=0.365  Sum_probs=130.9

Q ss_pred             cccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCC-Ccccc--CCCCCCCccEE
Q psy14728         58 EVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNR-IREIK--GLDHLANLEKL  130 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~-~~~l~--~~~~l~~L~~L  130 (319)
                      .++++.|+++++.++.++  .+..+++|++|++++|.++.+  ..+..+++|++|++++|. +..++  .+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            568999999999999876  488999999999999999854  458999999999999997 88773  58889999999


Q ss_pred             EccCCcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCC
Q psy14728        131 YLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLR  204 (319)
Q Consensus       131 ~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~  204 (319)
                      ++++|.++..+  .+..+++|++|++++|.+..++  .+..+++|++|++++|.+..++  .+..+++|++|++++|++.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            99999998864  4677788888888877766443  2555666666666666655542  2445555555555555554


Q ss_pred             CC--cCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCC
Q psy14728        205 TI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKI  247 (319)
Q Consensus       205 ~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~  247 (319)
                      .+  ..+..+++|+.|++++|.+++++.  +..+++|+.|++++|.+
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            32  124444444444444444444331  34444444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=185.12  Aligned_cols=261  Identities=21%  Similarity=0.263  Sum_probs=217.4

Q ss_pred             ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEE
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKL  130 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L  130 (319)
                      ...|+.....+++++.++.+|. .-.++|++|++++|+++.++  .+.++++|++|++++|.+..++  .+..+++|++|
T Consensus        27 ~~~C~~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CCEECTTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4457777778999999999875 23469999999999998654  4899999999999999999875  48899999999


Q ss_pred             EccCCcccccCC--CCCCCCccEEEccCCcCcCcc---ccCCCCCccEEEcCCCC-Cccc--cCCCCCCCCCEEECCCCC
Q psy14728        131 YLCSNKISKIEN--VDHLKKLKVLELGDNKIRIIE---NLDGLTNLEELYLGKNK-ISRI--DNLASLTKLNILSLQCNR  202 (319)
Q Consensus       131 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~---~l~~~~~L~~L~l~~~~-l~~~--~~l~~~~~L~~L~l~~~~  202 (319)
                      ++++|.++.++.  +..+++|++|++++|.+..++   .+..+++|++|++++|. +..+  ..+..+++|++|++++|+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999998763  789999999999999987664   37889999999999984 6655  468889999999999999


Q ss_pred             CCCC--cCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCcc-----ccccCCCCcEEEcCCCcCCCCc
Q psy14728        203 LRTI--ENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQ-----NIAHLTELQEFWINDNQVSDWN  273 (319)
Q Consensus       203 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~l~~~~~L~~L~l~~n~~~~~~  273 (319)
                      +..+  ..+..+++|++|++++|.++.++.  +..+++|++|++++|.++..+     .....+.++.++++++.+.+..
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            9875  348889999999999999988764  456899999999999988643     2345678899999999887632


Q ss_pred             ---ccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        274 ---TVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       274 ---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                         .+..+..+++|+.|++++|.++..|..   ++..+++|+.|+++++
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSVPDG---IFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCccCHH---HHhcCCCCCEEEeeCC
Confidence               234577899999999999999988773   4578999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=2.9e-24  Score=185.82  Aligned_cols=233  Identities=20%  Similarity=0.226  Sum_probs=192.0

Q ss_pred             cCCCCcchhhhhccCchhhcccccccceEEEecC-CcccC-cc-ccccCCCCCEEEccCCCcc-C-ccCCCCCCCCcEEE
Q psy14728         35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRW-NLIKK-IE-NIHMLTTLKELELYDNQLT-V-IENLDTLINLEILD  109 (319)
Q Consensus        35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~-l~-~~~~~~~L~~L~l~~~~~~-~-~~~~~~l~~L~~L~  109 (319)
                      +..++++.+...+.......+..+++|++|++++ +.+.+ ++ .+..+++|++|++++|.++ . +..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            4445555555554112236889999999999995 88774 45 5899999999999999997 3 34589999999999


Q ss_pred             ccCCCCc-ccc-CCCCCCCccEEEccCCcccc-cC-CCCCCC-CccEEEccCCcCc--CccccCCCCCccEEEcCCCCCc
Q psy14728        110 LSFNRIR-EIK-GLDHLANLEKLYLCSNKISK-IE-NVDHLK-KLKVLELGDNKIR--IIENLDGLTNLEELYLGKNKIS  182 (319)
Q Consensus       110 l~~~~~~-~l~-~~~~l~~L~~L~l~~~~~~~-~~-~~~~~~-~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~l~  182 (319)
                      +++|.+. .+| .+..+++|++|++++|.+++ ++ .+..++ +|++|++++|.+.  .+..+..++ |++|++++|.+.
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence            9999998 455 58889999999999999984 44 677787 9999999999886  334566666 999999999987


Q ss_pred             cc--cCCCCCCCCCEEECCCCCCCC-CcCCcCCCCCCeEeccCCcCcC-cc-ccCCCCCccEEEccCCCCC-CccccccC
Q psy14728        183 RI--DNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGLTT-IE-NLLSNEKLETLDVAYNKIS-IIQNIAHL  256 (319)
Q Consensus       183 ~~--~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~-~~~~l~~~  256 (319)
                      +.  ..+..+++|+.|++++|+++. ++.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .++....+
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l  290 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence            64  457889999999999999985 4557889999999999999984 55 4888999999999999998 46667889


Q ss_pred             CCCcEEEcCCCc
Q psy14728        257 TELQEFWINDNQ  268 (319)
Q Consensus       257 ~~L~~L~l~~n~  268 (319)
                      ++|+.+++++|+
T Consensus       291 ~~L~~l~l~~N~  302 (313)
T 1ogq_A          291 QRFDVSAYANNK  302 (313)
T ss_dssp             GGSCGGGTCSSS
T ss_pred             cccChHHhcCCC
Confidence            999999999997

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6e-24  Score=180.21  Aligned_cols=217  Identities=23%  Similarity=0.312  Sum_probs=132.6

Q ss_pred             cceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccc
Q psy14728         60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK  139 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~  139 (319)
                      ++..+++..+.+.+......+++|+.|+++++.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~   99 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS   99 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc
Confidence            34444455555555544555666666666666665555555666666666666666555555556666666666666655


Q ss_pred             cCC--CCCCCCccEEEccCCcCcCccc--cCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcC
Q psy14728        140 IEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEA  211 (319)
Q Consensus       140 ~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~  211 (319)
                      ++.  +..+++|++|++++|.+...+.  +..+++|++|++++|.+..++.  +..+++|+.|++++|+++.++.  +..
T Consensus       100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  179 (272)
T 3rfs_A          100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK  179 (272)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence            442  4556666666666666553332  5566667777776666665532  5566777777777777766543  566


Q ss_pred             CCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCC
Q psy14728        212 LTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNK  282 (319)
Q Consensus       212 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  282 (319)
                      +++|++|++++|.+++++.  +..+++|+.|++++|.+.     ..+++|+++++.+|.+++ ..+..++.++
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~~n~~~g-~ip~~~~~~~  246 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSG-VVRNSAGSVA  246 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-----CCTTTTHHHHHHHHHTGG-GBBCTTSCBC
T ss_pred             CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-----ccCcHHHHHHHHHHhCCC-cccCcccccC
Confidence            7777777777777776653  566777777777777553     345667777777777766 3334444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.90  E-value=4.4e-22  Score=187.89  Aligned_cols=125  Identities=23%  Similarity=0.232  Sum_probs=105.1

Q ss_pred             cccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEE
Q psy14728         33 MSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEIL  108 (319)
Q Consensus        33 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L  108 (319)
                      ..++.+|++.+....-.+  ..|..+++|++|++++|.++.++  .|.++++|++|+|++|+++.++  .|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~--~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCH--HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            356778888887765443  67899999999999999999885  3889999999999999998654  38999999999


Q ss_pred             EccCCCCcccc--CCCCCCCccEEEccCCcccccC---CCCCCCCccEEEccCCcC
Q psy14728        109 DLSFNRIREIK--GLDHLANLEKLYLCSNKISKIE---NVDHLKKLKVLELGDNKI  159 (319)
Q Consensus       109 ~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~  159 (319)
                      ++++|.++.++  .+..+++|++|++++|.++.++   .+..+++|++|++++|.+
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            99999999887  3888999999999999987642   467789999999888765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.4e-22  Score=174.79  Aligned_cols=214  Identities=18%  Similarity=0.169  Sum_probs=144.3

Q ss_pred             ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCcc-CCCCCCCCcEEEcc
Q psy14728         34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIE-NLDTLINLEILDLS  111 (319)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~  111 (319)
                      .+..++++.+... ..+  ..+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFP--DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCC--SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcC--hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            3555666666554 222  557789999999999999998874 899999999999999998654 58999999999999


Q ss_pred             CCCCc-cccC-CC---------CCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728        112 FNRIR-EIKG-LD---------HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK  180 (319)
Q Consensus       112 ~~~~~-~l~~-~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~  180 (319)
                      +|.+. .+|. +.         .+++|++|++++|.++.++                     ..+..+++|++|++++|.
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---------------------~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---------------------ASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC---------------------GGGGGCTTCCEEEEESSC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch---------------------HhhcCCCCCCEEEccCCC
Confidence            97544 4442 22         2555555555555554433                     234445555555555555


Q ss_pred             Cccc-cCCCCCCCCCEEECCCCCCCC-Cc-CCcCCCCCCeEeccCCcCcC-cc-ccCCCCCccEEEccCCCCCC--cccc
Q psy14728        181 ISRI-DNLASLTKLNILSLQCNRLRT-IE-NLEALTNLTQLYLSENGLTT-IE-NLLSNEKLETLDVAYNKISI--IQNI  253 (319)
Q Consensus       181 l~~~-~~l~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~--~~~l  253 (319)
                      +.++ +.+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.+  ++++
T Consensus       218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            5544 235556666666666665543 22 36667777777777766543 34 36777788888888876643  3457


Q ss_pred             ccCCCCcEEEcCCCcCCC
Q psy14728        254 AHLTELQEFWINDNQVSD  271 (319)
Q Consensus       254 ~~~~~L~~L~l~~n~~~~  271 (319)
                      ..+++|+.+++..+.+..
T Consensus       298 ~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          298 AQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             GGSCTTCEEECCGGGSCC
T ss_pred             hhccCceEEeCCHHHHHH
Confidence            788888888887765544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.2e-21  Score=167.34  Aligned_cols=200  Identities=24%  Similarity=0.316  Sum_probs=120.4

Q ss_pred             cccCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEE
Q psy14728         77 IHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLE  153 (319)
Q Consensus        77 ~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  153 (319)
                      +..+++++.++++++.++.++. +  .++++.|++++|.+..++  .+..+++|+.|++++|.++.++....+++|++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            4556667777777776665442 2  256667777777666553  3556666666666666666555445555555555


Q ss_pred             ccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc-
Q psy14728        154 LGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN-  230 (319)
Q Consensus       154 l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-  230 (319)
                      +++|.+..++                     ..+..+++|++|++++|+++.++  .+..+++|++|++++|+++.++. 
T Consensus        84 Ls~N~l~~l~---------------------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G           84 LSHNQLQSLP---------------------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             CCSSCCSSCC---------------------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCcCCcCc---------------------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence            5555544322                     12344555555555555555543  25556666666666666666543 


Q ss_pred             -cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhH
Q psy14728        231 -LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYR  301 (319)
Q Consensus       231 -~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  301 (319)
                       +..+++|+.|++++|+++.++.  +..+++|++|++++|+++..  +..+...++|+.+++++|++.+.+...
T Consensus       143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i--p~~~~~~~~L~~l~L~~Np~~C~c~~~  214 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI--PKGFFGSHLLPFAFLHGNPWLCNCEIL  214 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCCCSEEECCSCCBCCSGGGH
T ss_pred             hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc--ChhhcccccCCeEEeCCCCccCcCccH
Confidence             4556667777777777666542  45667777777777777753  244555667777777777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.89  E-value=2.4e-23  Score=178.15  Aligned_cols=184  Identities=33%  Similarity=0.467  Sum_probs=100.3

Q ss_pred             EecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCC
Q psy14728         65 LLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVD  144 (319)
Q Consensus        65 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~  144 (319)
                      .+....+.++.....+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|+.|++++|.++.++.+.
T Consensus        30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~  109 (291)
T 1h6t_A           30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLK  109 (291)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGT
T ss_pred             HhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhc
Confidence            34444444444444555555555555555555445555555555555555555544555555555555555555555555


Q ss_pred             CCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCc
Q psy14728        145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENG  224 (319)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (319)
                      .+++|++|++++|.+..++.+..+++|+.|++++|.+.+++.+..+++|+.|++++|++..++.+..+++|+.|++++|.
T Consensus       110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence            55555555555555554444555555555555555555554455555555555555555554445555555555555555


Q ss_pred             CcCccccCCCCCccEEEccCCCCC
Q psy14728        225 LTTIENLLSNEKLETLDVAYNKIS  248 (319)
Q Consensus       225 ~~~~~~~~~~~~L~~L~l~~~~~~  248 (319)
                      ++.++.+..+++|+.|++++|.++
T Consensus       190 i~~l~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          190 ISDLRALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred             CCCChhhccCCCCCEEECcCCccc
Confidence            555555555555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=5.5e-24  Score=184.03  Aligned_cols=237  Identities=18%  Similarity=0.159  Sum_probs=159.4

Q ss_pred             cccccccceEEEecCCcccCccc-cccCCCCCEEEccCCCccC--ccC-CC-------CCCCCcEEEccCCCCcc-ccC-
Q psy14728         54 EESKEVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTV--IEN-LD-------TLINLEILDLSFNRIRE-IKG-  120 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~--~~~-~~-------~l~~L~~L~l~~~~~~~-l~~-  120 (319)
                      .+...++|+.++++++.+ .+|. +...  |+.|++++|.++.  ++. +.       ++++|++|++++|.+.. +|. 
T Consensus        38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            445566677777777777 4442 3322  6677777776642  111 22       46777777777777763 442 


Q ss_pred             C--CCCCCccEEEccCCcccccC-CCCC-----CCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc----cC
Q psy14728        121 L--DHLANLEKLYLCSNKISKIE-NVDH-----LKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI----DN  186 (319)
Q Consensus       121 ~--~~l~~L~~L~l~~~~~~~~~-~~~~-----~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~----~~  186 (319)
                      +  ..+++|++|++++|.+++.+ .+..     +++|++|++++|.+....  .+..+++|++|++++|.+.+.    +.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            2  66777777777777776653 1222     277777777777776443  567777888888888775431    22


Q ss_pred             C--CCCCCCCEEECCCCCCCCCcC-----CcCCCCCCeEeccCCcCcCcc---ccCCCCCccEEEccCCCCCCccccccC
Q psy14728        187 L--ASLTKLNILSLQCNRLRTIEN-----LEALTNLTQLYLSENGLTTIE---NLLSNEKLETLDVAYNKISIIQNIAHL  256 (319)
Q Consensus       187 l--~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~~  256 (319)
                      +  ..+++|++|++++|+++.++.     +..+++|+.|++++|.+++.+   .+..+++|++|++++|.++.++.... 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            2  677888888888888875432     346688888888888887743   35566888888888888887654222 


Q ss_pred             CCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC
Q psy14728        257 TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       257 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  297 (319)
                      ++|++|++++|++++.+  . +..+++|+.|++++|+++..
T Consensus       274 ~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SEEEEEECCSSCCCSCC--C-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCceEEECCCCCCCCCh--h-HhhCCCCCEEeccCCCCCCC
Confidence            78888888888888752  3 77888888888888887753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.6e-21  Score=163.79  Aligned_cols=196  Identities=25%  Similarity=0.377  Sum_probs=124.9

Q ss_pred             CCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcC
Q psy14728         82 TLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI  159 (319)
Q Consensus        82 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  159 (319)
                      +.+.++++++.++.++.- -.++|++|++++|.+..++  .+..+++|++|++++|.++.++.                 
T Consensus        17 ~~~~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-----------------   78 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-----------------   78 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-----------------
T ss_pred             CCCEEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-----------------
Confidence            456666666666654421 1145666666666665554  25555666666666655554431                 


Q ss_pred             cCccccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCC
Q psy14728        160 RIIENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLS  233 (319)
Q Consensus       160 ~~~~~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~  233 (319)
                         ..+..+++|++|++++|.+..++  .+..+++|++|++++|+++.++.  +..+++|++|++++|.++.++.  +..
T Consensus        79 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           79 ---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             ---TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ---hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence               11334455555555555554442  34556666666666666665532  5677777777777777777654  667


Q ss_pred             CCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        234 NEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      +++|++|++++|.++.++  .+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++.
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCeeCCCc
Confidence            788888888888877654  3677888888888888888743 2456778888888888888887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.89  E-value=8.7e-23  Score=174.64  Aligned_cols=193  Identities=28%  Similarity=0.375  Sum_probs=172.1

Q ss_pred             CCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCc
Q psy14728         81 TTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIR  160 (319)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  160 (319)
                      ..+..+.+....++.+..+..+++|++|++++|.+..++++..+++|++|++++|.++.++.+..+++|++|++++|.+.
T Consensus        24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC
Confidence            33444556666666666677889999999999999999889999999999999999998877899999999999999998


Q ss_pred             CccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEE
Q psy14728        161 IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL  240 (319)
Q Consensus       161 ~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L  240 (319)
                      .++.+..+++|++|++++|.+.+++.+..+++|+.|++++|+++.++.+..+++|+.|++++|.+++++.+..+++|+.|
T Consensus       104 ~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L  183 (291)
T 1h6t_A          104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL  183 (291)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred             CChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEE
Confidence            88889999999999999999998888889999999999999999888889999999999999999988778899999999


Q ss_pred             EccCCCCCCccccccCCCCcEEEcCCCcCCCCc
Q psy14728        241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWN  273 (319)
Q Consensus       241 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  273 (319)
                      ++++|.++.++.+..+++|+.|++++|+++..+
T Consensus       184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred             ECCCCcCCCChhhccCCCCCEEECcCCcccCCc
Confidence            999999998888999999999999999887743

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=1.8e-23  Score=180.73  Aligned_cols=231  Identities=25%  Similarity=0.262  Sum_probs=184.0

Q ss_pred             ccCCCCcchhhhhccCchhhcccccccceEEEecCCcccC--ccc-cc-------cCCCCCEEEccCCCccC-c-cCC--
Q psy14728         34 SLDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKK--IEN-IH-------MLTTLKELELYDNQLTV-I-ENL--   99 (319)
Q Consensus        34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~-~~-------~~~~L~~L~l~~~~~~~-~-~~~--   99 (319)
                      .++.++++.+..  ..+  ..+...  ++.|+++++.+..  ++. +.       .+++|++|++++|+++. . ..+  
T Consensus        44 ~L~~l~l~~n~l--~~p--~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADL--GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             ECTTHHHHCCTT--CCC--HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CceeEeeccccc--ccH--HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            455555665555  223  223222  8889999998864  332 22       68999999999999973 3 334  


Q ss_pred             CCCCCCcEEEccCCCCccccC-CCCC-----CCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcC----cccc--
Q psy14728        100 DTLINLEILDLSFNRIREIKG-LDHL-----ANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRI----IENL--  165 (319)
Q Consensus       100 ~~l~~L~~L~l~~~~~~~l~~-~~~l-----~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l--  165 (319)
                      ..+++|++|++++|.+..+|. +..+     ++|++|++++|.++.++  .+..+++|++|++++|++..    +..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            889999999999999987753 3333     89999999999998875  68899999999999998642    2333  


Q ss_pred             CCCCCccEEEcCCCCCcccc-----CCCCCCCCCEEECCCCCCCCC---cCCcCCCCCCeEeccCCcCcCccccCCCCCc
Q psy14728        166 DGLTNLEELYLGKNKISRID-----NLASLTKLNILSLQCNRLRTI---ENLEALTNLTQLYLSENGLTTIENLLSNEKL  237 (319)
Q Consensus       166 ~~~~~L~~L~l~~~~l~~~~-----~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L  237 (319)
                      ..+++|++|++++|.+..++     .+..+++|++|++++|++...   +.+..+++|++|++++|.++.+|.... ++|
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L  276 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKL  276 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCc
Confidence            78999999999999988542     235779999999999999874   346678999999999999998876333 899


Q ss_pred             cEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728        238 ETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       238 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      ++|++++|++++++.+..+++|++|++++|++++
T Consensus       277 ~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          277 SVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             eEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            9999999999988779999999999999999986

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.1e-22  Score=169.58  Aligned_cols=209  Identities=26%  Similarity=0.379  Sum_probs=133.8

Q ss_pred             cCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCc
Q psy14728         79 MLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNK  158 (319)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  158 (319)
                      .+.++..+++.++.+........+++|+.|+++++.+..++.+..+++|+.|++++|.++.++.+..+++|++|++++|.
T Consensus        17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC
T ss_pred             hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc
Confidence            34455556666666666555667778888888888887777777788888888888887777667777777777777777


Q ss_pred             CcCccc--cCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--
Q psy14728        159 IRIIEN--LDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--  230 (319)
Q Consensus       159 ~~~~~~--l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--  230 (319)
                      +..+..  +..+++|++|++++|.+..++.  +..+++|++|++++|+++.++.  +..+++|++|++++|++++++.  
T Consensus        97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  176 (272)
T 3rfs_A           97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV  176 (272)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence            664432  5666777777777776665532  5566666666666666665543  4566666666666666665543  


Q ss_pred             cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCc
Q psy14728        231 LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVA  295 (319)
Q Consensus       231 ~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  295 (319)
                      +..+++|++|++++|.++.++.  +..+++|++|++++|.+..        .+++++.++++.|.+.
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHS  235 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTG
T ss_pred             hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCC
Confidence            4556666666666666655432  4556666666666665443        2445555555544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=3.1e-21  Score=163.75  Aligned_cols=215  Identities=25%  Similarity=0.321  Sum_probs=133.3

Q ss_pred             EEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCccc
Q psy14728         63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus        63 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~  138 (319)
                      ..+..+..+..+|. .-.++|++|++++|.++.++  .+.++++|++|++++|.+..++  .+..+++|++|++++|.++
T Consensus        11 ~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             eEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            34455555655553 11256778888877776443  4677777777777777777665  3666777777777777766


Q ss_pred             ccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCC--Cc-CCcCCC
Q psy14728        139 KIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRT--IE-NLEALT  213 (319)
Q Consensus       139 ~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~--~~-~~~~~~  213 (319)
                      .++  .+..+++|++|++++|.+.....                    ..+..+++|++|++++|.+..  ++ .+..++
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~  149 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLEN--------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTT--------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             ccChhhhcCCccccEEECCCCCccccCc--------------------hhcccCCCCCEEECcCCccceecCchhhccCC
Confidence            543  34555555555555554432221                    124455555555555555544  22 355666


Q ss_pred             CCCeEeccCCcCcCcc--ccCCCCCcc----EEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        214 NLTQLYLSENGLTTIE--NLLSNEKLE----TLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       214 ~L~~L~l~~~~~~~~~--~~~~~~~L~----~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      +|++|++++|++++++  .+..++.|+    +|++++|.++.++ ......+|++|++++|+++..+ ...+..+++|+.
T Consensus       150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  228 (276)
T 2z62_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQK  228 (276)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCE
T ss_pred             CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC-HhHhcccccccE
Confidence            6777777777666543  233333333    7788888777653 3334457888888888888743 255677888888


Q ss_pred             EEcCCCcCcCChh
Q psy14728        287 IYLDRNPVAQDPN  299 (319)
Q Consensus       287 L~l~~n~~~~~~~  299 (319)
                      |++++|++.+++.
T Consensus       229 L~l~~N~~~c~c~  241 (276)
T 2z62_A          229 IWLHTNPWDCSCP  241 (276)
T ss_dssp             EECCSSCBCCCTT
T ss_pred             EEccCCcccccCC
Confidence            8888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=3.6e-24  Score=194.90  Aligned_cols=174  Identities=21%  Similarity=0.201  Sum_probs=96.8

Q ss_pred             CCCccEEEccCCcCcC------ccccCCCCCccEEEcCCCCCccc------cC-CCCCCCCCEEECCCCCCCC-----Cc
Q psy14728        146 LKKLKVLELGDNKIRI------IENLDGLTNLEELYLGKNKISRI------DN-LASLTKLNILSLQCNRLRT-----IE  207 (319)
Q Consensus       146 ~~~L~~L~l~~~~~~~------~~~l~~~~~L~~L~l~~~~l~~~------~~-l~~~~~L~~L~l~~~~~~~-----~~  207 (319)
                      .++|++|++++|.+..      ...+..+++|++|++++|.+.+.      +. ...+++|++|++++|.++.     ++
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            3455555555555543      12234456666666666655442      11 2245667777777766654     22


Q ss_pred             -CCcCCCCCCeEeccCCcCcCcc-----c-c-CCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCc
Q psy14728        208 -NLEALTNLTQLYLSENGLTTIE-----N-L-LSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWN  273 (319)
Q Consensus       208 -~~~~~~~L~~L~l~~~~~~~~~-----~-~-~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~  273 (319)
                       .+..+++|++|++++|.++..+     . + ...++|++|++++|.++..      ..+..+++|++|++++|.+++..
T Consensus       278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence             2445667777777777665321     1 1 2235677777777766542      23455677777777777776532


Q ss_pred             ccc---ccc-CCCCCcEEEcCCCcCcCChh-hHHHHHHhCCceEEEecccC
Q psy14728        274 TVN---VLE-NNKQLQTIYLDRNPVAQDPN-YRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       274 ~~~---~~~-~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ...   .+. ..++|+.|++++|.++.... .....+..+++|+.|++++|
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence            211   111 15677777777777664211 11223456777888777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=7.6e-24  Score=192.78  Aligned_cols=305  Identities=21%  Similarity=0.183  Sum_probs=187.2

Q ss_pred             CceEEEEEeeecccc-------ccccccCCCCcchhhhhccC--chhhcccccccceEEEecCCcccCc--ccc-ccCC-
Q psy14728         15 DNLVTLNVEAVENTH-------GNQMSLDNPDEESEAETTES--KAEDEESKEVCIERLLLRWNLIKKI--ENI-HMLT-   81 (319)
Q Consensus        15 ~~l~~l~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l--~~~-~~~~-   81 (319)
                      .++..++++......       .....++.++++.+......  .....+..+++|++|++++|.+.+.  ..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            346666776554331       12234566666666543321  1224456677777777777776642  222 2233 


Q ss_pred             ---CCCEEEccCCCccC------ccCCCCCCCCcEEEccCCCCcccc--C-----CCCCCCccEEEccCCccccc-----
Q psy14728         82 ---TLKELELYDNQLTV------IENLDTLINLEILDLSFNRIREIK--G-----LDHLANLEKLYLCSNKISKI-----  140 (319)
Q Consensus        82 ---~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~l~--~-----~~~l~~L~~L~l~~~~~~~~-----  140 (319)
                         +|++|++++|.++.      +..+..+++|++|++++|.+....  .     ....++|++|++++|.++..     
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               57777777777763      234677777778888777765321  1     22345677788877776652     


Q ss_pred             -CCCCCCCCccEEEccCCcCcCc--cccC-----CCCCccEEEcCCCCCccc------cCCCCCCCCCEEECCCCCCCCC
Q psy14728        141 -ENVDHLKKLKVLELGDNKIRII--ENLD-----GLTNLEELYLGKNKISRI------DNLASLTKLNILSLQCNRLRTI  206 (319)
Q Consensus       141 -~~~~~~~~L~~L~l~~~~~~~~--~~l~-----~~~~L~~L~l~~~~l~~~------~~l~~~~~L~~L~l~~~~~~~~  206 (319)
                       ..+..+++|++|++++|.+...  ..+.     ..++|++|++++|.+...      ..+..+++|++|++++|.+...
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence             1345567788888887776421  1111     245788888888876652      2355677888888888876542


Q ss_pred             ------cC-CcCCCCCCeEeccCCcCcC-----cc-ccCCCCCccEEEccCCCCCCc--ccc-----ccCCCCcEEEcCC
Q psy14728        207 ------EN-LEALTNLTQLYLSENGLTT-----IE-NLLSNEKLETLDVAYNKISII--QNI-----AHLTELQEFWIND  266 (319)
Q Consensus       207 ------~~-~~~~~~L~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~~~~~--~~l-----~~~~~L~~L~l~~  266 (319)
                            +. ...+++|++|++++|.++.     ++ .+..+++|++|++++|.++..  ..+     ...++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                  11 2357788888888887775     33 255677888888888877532  111     1235888888888


Q ss_pred             CcCCCCc---ccccccCCCCCcEEEcCCCcCcCChhh-HHHHH-HhCCceEEEecccC
Q psy14728        267 NQVSDWN---TVNVLENNKQLQTIYLDRNPVAQDPNY-RRKIK-LVCPWIVQIDATLA  319 (319)
Q Consensus       267 n~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~-~~~~~L~~l~~~~C  319 (319)
                      |.+++..   .+..+..+++|+.|++++|+++..... ....+ ..+++|+.|++++|
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            8887642   224456678888888888877654321 11111 12678888888876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.87  E-value=2.1e-22  Score=188.13  Aligned_cols=173  Identities=36%  Similarity=0.440  Sum_probs=99.4

Q ss_pred             ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccC
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS  134 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~  134 (319)
                      +..+++|+.|+++++.+..++.+..+++|+.|+|++|+++.++.+..+++|+.|+|++|.+..++.+..+++|+.|++++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            34455566666666666655555566666666666666555444555666666666666655555555556666666666


Q ss_pred             CcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCC
Q psy14728        135 NKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTN  214 (319)
Q Consensus       135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  214 (319)
                      |.+..++.+..+++|+.|++++|.+..+..+..+++|+.|++++|.+.++..+..+++|+.|++++|.+..++.+..+++
T Consensus       119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~  198 (605)
T 1m9s_A          119 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN  198 (605)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred             CCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCC
Confidence            65555555555555555555555555555555555555555555555554335555555555555555555555555555


Q ss_pred             CCeEeccCCcCcC
Q psy14728        215 LTQLYLSENGLTT  227 (319)
Q Consensus       215 L~~L~l~~~~~~~  227 (319)
                      |+.|++++|.+..
T Consensus       199 L~~L~L~~N~l~~  211 (605)
T 1m9s_A          199 LDVLELFSQECLN  211 (605)
T ss_dssp             CSEEECCSEEEEC
T ss_pred             CCEEEccCCcCcC
Confidence            5555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.87  E-value=9.3e-23  Score=190.52  Aligned_cols=193  Identities=32%  Similarity=0.419  Sum_probs=160.8

Q ss_pred             cccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcc
Q psy14728         58 EVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI  137 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~  137 (319)
                      +.++..+.+....+.++..+..+++|+.|++++|.+..++.+..+++|+.|+|++|.+..++.+..+++|+.|++++|.+
T Consensus        20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC
Confidence            44555666777778887778889999999999999998888999999999999999999888788899999999999999


Q ss_pred             cccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCe
Q psy14728        138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQ  217 (319)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~  217 (319)
                      +.++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+.+++.+..+++|+.|++++|.+..++.+..+++|+.
T Consensus       100 ~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~  179 (605)
T 1m9s_A          100 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN  179 (605)
T ss_dssp             CCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             CCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCE
Confidence            88888888889999999888888777788888888888888888877777788888888888888877655777788888


Q ss_pred             EeccCCcCcCccccCCCCCccEEEccCCCCCCc
Q psy14728        218 LYLSENGLTTIENLLSNEKLETLDVAYNKISII  250 (319)
Q Consensus       218 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  250 (319)
                      |++++|.+++++.+..+++|+.|++++|.+...
T Consensus       180 L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          180 LYLSKNHISDLRALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             EECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred             EECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence            888888888777777778888888888776643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.3e-20  Score=161.04  Aligned_cols=194  Identities=26%  Similarity=0.289  Sum_probs=166.0

Q ss_pred             cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEE
Q psy14728         54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLY  131 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~  131 (319)
                      .++.+++++.++++++.++.+|. .-.++++.|++++|.++.+  ..+..+++|++|++++|.++.++....+++|+.|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             cccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            46778999999999999998874 1237999999999999854  45899999999999999999998778899999999


Q ss_pred             ccCCcccccC-CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCC
Q psy14728        132 LCSNKISKIE-NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTI  206 (319)
Q Consensus       132 l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~  206 (319)
                      +++|.++.++ .+..+++|++|++++|.+..++  .+.++++|++|++++|.+..++  .+..+++|+.|++++|+++.+
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            9999999887 5778999999999999987653  4788999999999999988873  367888999999999999887


Q ss_pred             cC--CcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCC
Q psy14728        207 EN--LEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKIS  248 (319)
Q Consensus       207 ~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  248 (319)
                      +.  +..+++|+.|++++|+++.+|. +...+.|+.+++++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            64  5778999999999999988864 667778999999988764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=8.5e-21  Score=161.07  Aligned_cols=194  Identities=29%  Similarity=0.426  Sum_probs=137.0

Q ss_pred             ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEc
Q psy14728         59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYL  132 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l  132 (319)
                      +++++|+++++.+++++  .+..+++|++|++++|+++.++  .+..+++|++|++++|.+..++  .+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            47999999999999875  5889999999999999998654  4899999999999999999876  4888999999999


Q ss_pred             cCCcccccC--CCCCCCCccEEEccCCcCcC---ccccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCC
Q psy14728        133 CSNKISKIE--NVDHLKKLKVLELGDNKIRI---IENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRT  205 (319)
Q Consensus       133 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~  205 (319)
                      ++|.++.++  .+..+++|++|++++|.+..   +..+..+++|++|++++|.+.+++  .+..+++++           
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-----------  176 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-----------  176 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence            999998875  47788899999998888764   335666777777777777665542  222222222           


Q ss_pred             CcCCcCCCCCC-eEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCC
Q psy14728        206 IENLEALTNLT-QLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       206 ~~~~~~~~~L~-~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~  271 (319)
                              .+. .+++++|.++.++. .....+|++|++++|.++.++.  +..+++|++|++++|++..
T Consensus       177 --------~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          177 --------LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             --------TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             --------ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence                    111 45555555554432 2233355566666665554432  4556666666666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=6.1e-20  Score=155.32  Aligned_cols=188  Identities=28%  Similarity=0.405  Sum_probs=129.5

Q ss_pred             ccceEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccC
Q psy14728         59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCS  134 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~  134 (319)
                      ...+.++++++.++.+|. .-.+++++|++++|+++.++  .+.++++|++|++++|.+..++.  +..+++|++|++++
T Consensus        16 ~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            357899999999998874 12378999999999998664  48899999999999999998874  67899999999999


Q ss_pred             CcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC
Q psy14728        135 NKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN  208 (319)
Q Consensus       135 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~  208 (319)
                      |.++.++  .+..+++|++|++++|.+..++  .+..+++|++|++++|.+..++.  +..+++|++|++++|+++.++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            9988765  4567777777777777765443  25566666666666666655432  4555556666666555555432


Q ss_pred             --CcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCC
Q psy14728        209 --LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKI  247 (319)
Q Consensus       209 --~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~  247 (319)
                        +..+++|++|++++|.++.++.  +..+++|+.|++++|.+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence              4445555555555555554432  34445555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=4e-21  Score=165.90  Aligned_cols=217  Identities=18%  Similarity=0.131  Sum_probs=113.1

Q ss_pred             cceEEEecCCcccC-----ccccccCCCCCEEEccCCCccCc--cCC--CCCCCCcEEEccCCCCccc------cCCCCC
Q psy14728         60 CIERLLLRWNLIKK-----IENIHMLTTLKELELYDNQLTVI--ENL--DTLINLEILDLSFNRIREI------KGLDHL  124 (319)
Q Consensus        60 ~L~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~~~--~~~--~~l~~L~~L~l~~~~~~~l------~~~~~l  124 (319)
                      .++.+.+.++.+..     +.....+++|++|++++|.++..  ..+  ..+++|++|++++|.+...      ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            45666666655542     11223345577777777766532  223  5666777777777666541      112345


Q ss_pred             CCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCC
Q psy14728        125 ANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR  202 (319)
Q Consensus       125 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~  202 (319)
                      ++|++|++++|.++..+  .+..+++|++|++++|++.....                +.....+..+++|++|++++|+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------LMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------HHTTSCTTSSCCCCSCBCCSSC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------hhHHHhhhcCCCCCEEECCCCC
Confidence            56666666666655443  34445555555555544321000                0000112344555555555555


Q ss_pred             CCCCcC-----CcCCCCCCeEeccCCcCcCc-c-ccCCC---CCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728        203 LRTIEN-----LEALTNLTQLYLSENGLTTI-E-NLLSN---EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW  272 (319)
Q Consensus       203 ~~~~~~-----~~~~~~L~~L~l~~~~~~~~-~-~~~~~---~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  272 (319)
                      ++.++.     ++.+++|++|++++|++++. | .+..+   ++|++|++++|.++.++... .++|++|++++|+++++
T Consensus       209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC
T ss_pred             CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC
Confidence            544322     24455666666666665554 2 23333   46666666666666543211 25677777777776664


Q ss_pred             cccccccCCCCCcEEEcCCCcCcC
Q psy14728        273 NTVNVLENNKQLQTIYLDRNPVAQ  296 (319)
Q Consensus       273 ~~~~~~~~~~~L~~L~l~~n~~~~  296 (319)
                      +.   +..+++|+.|++++|+++.
T Consensus       288 ~~---~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 PQ---PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC---TTSCCCCSCEECSSTTTSC
T ss_pred             ch---hhhCCCccEEECcCCCCCC
Confidence            22   4556677777777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=7.1e-23  Score=182.27  Aligned_cols=242  Identities=21%  Similarity=0.208  Sum_probs=144.5

Q ss_pred             hcccccccceEEEecCCcccCc-----c-ccccCCCCCEEEccCCCccCcc-----C-------CCCCCCCcEEEccCCC
Q psy14728         53 DEESKEVCIERLLLRWNLIKKI-----E-NIHMLTTLKELELYDNQLTVIE-----N-------LDTLINLEILDLSFNR  114 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~~~~~-----~-------~~~l~~L~~L~l~~~~  114 (319)
                      ..+..+++|+.|++++|.+...     . .+..+++|++|++++|.+..+.     .       +..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            4455666777777777766642     1 2556667777777665443211     1       2455666666666665


Q ss_pred             Ccc-----cc-CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCC---------CCccEEEcC
Q psy14728        115 IRE-----IK-GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGL---------TNLEELYLG  177 (319)
Q Consensus       115 ~~~-----l~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~---------~~L~~L~l~  177 (319)
                      +..     ++ .+..+++|++|++++|.++...  .+.                  ..+..+         ++|++|+++
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~------------------~~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA------------------RALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH------------------HHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH------------------HHHHHHhhhhhcccCCCCcEEECC
Confidence            543     22 2344555555555555543210  000                  011222         566666666


Q ss_pred             CCCCcc--cc----CCCCCCCCCEEECCCCCCCC------Cc-CCcCCCCCCeEeccCCcCc-----Ccc-ccCCCCCcc
Q psy14728        178 KNKISR--ID----NLASLTKLNILSLQCNRLRT------IE-NLEALTNLTQLYLSENGLT-----TIE-NLLSNEKLE  238 (319)
Q Consensus       178 ~~~l~~--~~----~l~~~~~L~~L~l~~~~~~~------~~-~~~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~L~  238 (319)
                      +|.+..  ++    .+..+++|++|++++|++..      ++ .+..+++|+.|++++|.++     .++ .+..+++|+
T Consensus       168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            666542  12    34456677777777777662      23 5667778888888888774     233 367778888


Q ss_pred             EEEccCCCCCCc------ccc--ccCCCCcEEEcCCCcCCCC---cccccc-cCCCCCcEEEcCCCcCcCChhhHHHHHH
Q psy14728        239 TLDVAYNKISII------QNI--AHLTELQEFWINDNQVSDW---NTVNVL-ENNKQLQTIYLDRNPVAQDPNYRRKIKL  306 (319)
Q Consensus       239 ~L~l~~~~~~~~------~~l--~~~~~L~~L~l~~n~~~~~---~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~  306 (319)
                      +|++++|.++..      ..+  ..+++|++|++++|.+++.   ..+..+ .++++|+.|++++|+++....+...+..
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  327 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE  327 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence            888888887643      234  3378888888888888762   122333 5578888888888888877764455555


Q ss_pred             hCCceE
Q psy14728        307 VCPWIV  312 (319)
Q Consensus       307 ~~~~L~  312 (319)
                      .+|.++
T Consensus       328 ~l~~~~  333 (386)
T 2ca6_A          328 VFSTRG  333 (386)
T ss_dssp             HHHHHT
T ss_pred             HhhhcC
Confidence            555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=9.7e-21  Score=157.29  Aligned_cols=197  Identities=18%  Similarity=0.341  Sum_probs=101.6

Q ss_pred             ccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCC-Ccccc--CCCCCCCccEEEccC-CcccccC--C
Q psy14728         71 IKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNR-IREIK--GLDHLANLEKLYLCS-NKISKIE--N  142 (319)
Q Consensus        71 ~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~l~--~~~~l~~L~~L~l~~-~~~~~~~--~  142 (319)
                      ++.+|.  -.++|++|++++|+++.++  .+..+++|++|++++|. ++.++  .+..+++|++|++++ |.++.++  .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            444444  2235666666666665432  25566666666666664 55554  345566666666665 5555543  2


Q ss_pred             CCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCC-CCCCCcC--CcCCCCCC-eE
Q psy14728        143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCN-RLRTIEN--LEALTNLT-QL  218 (319)
Q Consensus       143 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~-~~~~~~~--~~~~~~L~-~L  218 (319)
                      +..+++|++|++++|.+..++.+..+++|+                   .|++|++++| +++.++.  +..+++|+ +|
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~-------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L  161 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTD-------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTL  161 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCCCTTCCBCC-------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred             hCCCCCCCEEeCCCCCCccccccccccccc-------------------cccEEECCCCcchhhcCcccccchhcceeEE
Confidence            344445555555544443333333333333                   0014444444 3333321  44455555 55


Q ss_pred             eccCCcCcCccc-cCCCCCccEEEccCCC-CCCcc--ccccC-CCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCC
Q psy14728        219 YLSENGLTTIEN-LLSNEKLETLDVAYNK-ISIIQ--NIAHL-TELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN  292 (319)
Q Consensus       219 ~l~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~--~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  292 (319)
                      ++++|+++.+|. ....++|++|++++|+ ++.++  .+..+ ++|++|++++|+++..+.    ..+++|+.|+++++
T Consensus       162 ~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          162 KLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT  236 (239)
T ss_dssp             ECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred             EcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence            555555554442 1222556666666663 55442  35555 667777777776665432    14566666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=4.8e-21  Score=161.36  Aligned_cols=172  Identities=23%  Similarity=0.303  Sum_probs=136.7

Q ss_pred             ccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCc
Q psy14728         57 KEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNK  136 (319)
Q Consensus        57 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~  136 (319)
                      .+.++..++++++.+++++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|+.|++++|.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence            46667777888888888877888888999999888888777788888888888888888887778888888888888888


Q ss_pred             ccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCC
Q psy14728        137 ISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLT  216 (319)
Q Consensus       137 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~  216 (319)
                      ++.++.+.. ++|++|++++|.+..++.+..+++|+.|++++|.+++++.+..+++|+.|++++|+++.++.+..+++|+
T Consensus        97 l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~  175 (263)
T 1xeu_A           97 LKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN  175 (263)
T ss_dssp             CSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCC
T ss_pred             cCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCC
Confidence            888776655 7888888888877777677777888888888887777776777777788888777777766677777777


Q ss_pred             eEeccCCcCcCcc
Q psy14728        217 QLYLSENGLTTIE  229 (319)
Q Consensus       217 ~L~l~~~~~~~~~  229 (319)
                      .|++++|.++..|
T Consensus       176 ~L~l~~N~~~~~~  188 (263)
T 1xeu_A          176 WIDLTGQKCVNEP  188 (263)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             EEeCCCCcccCCc
Confidence            7777777766543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=4.4e-21  Score=161.61  Aligned_cols=171  Identities=25%  Similarity=0.328  Sum_probs=145.2

Q ss_pred             CCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728        101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK  180 (319)
Q Consensus       101 ~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~  180 (319)
                      .+.++..++++++.++.++.+..+++|+.|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence            45667778888888888887788899999999999988888888889999999999988877668888899999999998


Q ss_pred             CccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCc
Q psy14728        181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQ  260 (319)
Q Consensus       181 l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~  260 (319)
                      +.+++.+.. ++|++|++++|+++.++.+..+++|+.|++++|++++++.+..+++|+.|++++|.++.++.+..+++|+
T Consensus        97 l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~  175 (263)
T 1xeu_A           97 LKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN  175 (263)
T ss_dssp             CSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCC
T ss_pred             cCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCC
Confidence            888766666 8888899998888888778888888889988888888888888888888888888888877788888888


Q ss_pred             EEEcCCCcCCCC
Q psy14728        261 EFWINDNQVSDW  272 (319)
Q Consensus       261 ~L~l~~n~~~~~  272 (319)
                      +|++++|+++..
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.4e-20  Score=153.33  Aligned_cols=184  Identities=20%  Similarity=0.261  Sum_probs=127.0

Q ss_pred             ccceEEEecCCcccCccc--cccCCCCCEEEccCCC-ccCcc--CCCCCCCCcEEEccC-CCCcccc--CCCCCCCccEE
Q psy14728         59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQ-LTVIE--NLDTLINLEILDLSF-NRIREIK--GLDHLANLEKL  130 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~--~~~~l~~L~~L~l~~-~~~~~l~--~~~~l~~L~~L  130 (319)
                      ++++.|+++++.++.++.  +..+++|++|++++|+ ++.++  .+.++++|++|++++ |.++.++  .+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            489999999999998864  8899999999999997 87654  488999999999998 9999887  46789999999


Q ss_pred             EccCCcccccCCCCCCCCcc---EEEccCC-cCcCcc--ccCCCCCcc-EEEcCCCCCccccC-CCCCCCCCEEECCCCC
Q psy14728        131 YLCSNKISKIENVDHLKKLK---VLELGDN-KIRIIE--NLDGLTNLE-ELYLGKNKISRIDN-LASLTKLNILSLQCNR  202 (319)
Q Consensus       131 ~l~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~--~l~~~~~L~-~L~l~~~~l~~~~~-l~~~~~L~~L~l~~~~  202 (319)
                      ++++|.++.++.+..+++|+   +|++++| .+..++  .+.++++|+ .|++++|.+..++. ....++|+.|++++|+
T Consensus       111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence            99999999988888888887   8888888 665443  256666777 77777666655421 1112445555555552


Q ss_pred             -CCCCc--CCcCC-CCCCeEeccCCcCcCccccCCCCCccEEEcc
Q psy14728        203 -LRTIE--NLEAL-TNLTQLYLSENGLTTIENLLSNEKLETLDVA  243 (319)
Q Consensus       203 -~~~~~--~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  243 (319)
                       ++.++  .+..+ ++|+.|++++|+++.+|.. .+++|+.|+++
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred             CcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence             44432  13334 4444444444444443322 33344444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=5.4e-20  Score=158.77  Aligned_cols=195  Identities=16%  Similarity=0.105  Sum_probs=132.9

Q ss_pred             ccccceEEEecCCcccCc-c-cc--ccCCCCCEEEccCCCccCc------cCCCCCCCCcEEEccCCCCcccc--CCCCC
Q psy14728         57 KEVCIERLLLRWNLIKKI-E-NI--HMLTTLKELELYDNQLTVI------ENLDTLINLEILDLSFNRIREIK--GLDHL  124 (319)
Q Consensus        57 ~~~~L~~L~l~~~~~~~l-~-~~--~~~~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~l~--~~~~l  124 (319)
                      .+++|++|++++|.+.+. + .+  ..+++|++|++++|.++..      ..+..+++|++|++++|.+..++  .+..+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            457799999999999864 3 34  8899999999999998752      12457999999999999998775  47889


Q ss_pred             CCccEEEccCCcccc---cC---CCCCCCCccEEEccCCcCcCccc-----cCCCCCccEEEcCCCCCccc--cCCCCCC
Q psy14728        125 ANLEKLYLCSNKISK---IE---NVDHLKKLKVLELGDNKIRIIEN-----LDGLTNLEELYLGKNKISRI--DNLASLT  191 (319)
Q Consensus       125 ~~L~~L~l~~~~~~~---~~---~~~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~--~~l~~~~  191 (319)
                      ++|++|++++|++.+   ++   .+..+++|++|++++|.+..++.     +..+++|++|++++|.+.+.  +.+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-
Confidence            999999999999764   21   23456666666666666543322     23344555555555544432  111111 


Q ss_pred             CCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728        192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       192 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                                        ..+++|++|++++|+++.+|... +++|++|++++|++++++.+..+++|++|++++|++++
T Consensus       248 ------------------~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          248 ------------------MWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ------------------CCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             ------------------cCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence                              11256666666666666655421 26777777777777776656677778888888887765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.4e-21  Score=174.00  Aligned_cols=242  Identities=21%  Similarity=0.223  Sum_probs=146.6

Q ss_pred             ccccCCCCcchhhhhccCc--hhhcccccccceEEEecCCcccCc----c-c-------cccCCCCCEEEccCCCccC--
Q psy14728         32 QMSLDNPDEESEAETTESK--AEDEESKEVCIERLLLRWNLIKKI----E-N-------IHMLTTLKELELYDNQLTV--   95 (319)
Q Consensus        32 ~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l----~-~-------~~~~~~L~~L~l~~~~~~~--   95 (319)
                      ...++.++++.+.......  ....+..+++|++|+++++.+..+    | .       +..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            3457777888776655433  224577899999999999765533    2 1       3688999999999999875  


Q ss_pred             ---c-cCCCCCCCCcEEEccCCCCcccc--C----CCCC---------CCccEEEccCCcccc--cCCCCCCCCccEEEc
Q psy14728         96 ---I-ENLDTLINLEILDLSFNRIREIK--G----LDHL---------ANLEKLYLCSNKISK--IENVDHLKKLKVLEL  154 (319)
Q Consensus        96 ---~-~~~~~l~~L~~L~l~~~~~~~l~--~----~~~l---------~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l  154 (319)
                         + ..+..+++|++|++++|.+....  .    +..+         ++|++|++++|.++.  ++.+           
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----------  179 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-----------  179 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-----------
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH-----------
Confidence               2 34788999999999999987432  1    2223         677777777777652  2210           


Q ss_pred             cCCcCcCccccCCCCCccEEEcCCCCCcc------cc-CCCCCCCCCEEECCCCCCC-----CCc-CCcCCCCCCeEecc
Q psy14728        155 GDNKIRIIENLDGLTNLEELYLGKNKISR------ID-NLASLTKLNILSLQCNRLR-----TIE-NLEALTNLTQLYLS  221 (319)
Q Consensus       155 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~------~~-~l~~~~~L~~L~l~~~~~~-----~~~-~~~~~~~L~~L~l~  221 (319)
                             ...+..+++|++|++++|.+..      .+ .+..+++|+.|++++|.++     .++ .+..+++|++|+++
T Consensus       180 -------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          180 -------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             -------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             -------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence                   0112234444455554444441      12 4445555555666555553     122 24556666777777


Q ss_pred             CCcCcCc-----c-cc--CCCCCccEEEccCCCCCC-----cc-cc-ccCCCCcEEEcCCCcCCCCcc--cccccCCCCC
Q psy14728        222 ENGLTTI-----E-NL--LSNEKLETLDVAYNKISI-----IQ-NI-AHLTELQEFWINDNQVSDWNT--VNVLENNKQL  284 (319)
Q Consensus       222 ~~~~~~~-----~-~~--~~~~~L~~L~l~~~~~~~-----~~-~l-~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L  284 (319)
                      +|.++..     + .+  ..+++|++|++++|.++.     ++ .+ .++++|++|++++|.+++...  ......++++
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~  332 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR  332 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence            7766543     2 23  336777777777777765     32 23 456778888888887776441  2222334444


Q ss_pred             cEEEcCC
Q psy14728        285 QTIYLDR  291 (319)
Q Consensus       285 ~~L~l~~  291 (319)
                      +.+.+..
T Consensus       333 ~~~~l~~  339 (386)
T 2ca6_A          333 GRGELDE  339 (386)
T ss_dssp             TCCEECC
T ss_pred             Ccchhhh
Confidence            4445544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=3.9e-18  Score=142.57  Aligned_cols=171  Identities=26%  Similarity=0.344  Sum_probs=97.9

Q ss_pred             CCcEEEccCCCCccccC-CCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728        104 NLEILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK  180 (319)
Q Consensus       104 ~L~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~  180 (319)
                      ..++++++++.+..+|. +.  ++++.|++++|.++.++  .+..+++|++|++++|.+.....                
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------   76 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA----------------   76 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH----------------
Confidence            45566666666666653 22  45666666666665543  34444555555555444432211                


Q ss_pred             CccccCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCcc--ccc
Q psy14728        181 ISRIDNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQ--NIA  254 (319)
Q Consensus       181 l~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~l~  254 (319)
                          ..+..+++|++|++++|+++.++  .+..+++|++|++++|+++.++.  +..+++|++|++++|.++.++  .+.
T Consensus        77 ----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  152 (251)
T 3m19_A           77 ----GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD  152 (251)
T ss_dssp             ----TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ----hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence                12445555555555555555443  24556666666666666665543  455666666666666666543  356


Q ss_pred             cCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC
Q psy14728        255 HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       255 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  297 (319)
                      .+++|++|++++|+++..+ ...+..+++|+.|++++|++.+.
T Consensus       153 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCceeCC
Confidence            6667777777777766532 24556667777777777777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.8e-18  Score=160.00  Aligned_cols=177  Identities=23%  Similarity=0.340  Sum_probs=141.1

Q ss_pred             CCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcC
Q psy14728         81 TTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI  159 (319)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  159 (319)
                      .+|+.|++++|.++.++. +  +++|++|++++|.++.+|  ..+++|+.|++++|.+++++.+..  +|++|++++|.+
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCC
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcC
Confidence            389999999999887654 4  478999999999999888  667899999999999988876433  899999999888


Q ss_pred             cCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCc--
Q psy14728        160 RIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKL--  237 (319)
Q Consensus       160 ~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L--  237 (319)
                      ..++.  .+++|+.|++++|.+..++.  .+++|+.|++++|+++.+|.+.  ++|+.|++++|.++.+|.+.  .+|  
T Consensus       133 ~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~--~~L~~  204 (571)
T 3cvr_A          133 TMLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVP--VRNHH  204 (571)
T ss_dssp             SCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC-------
T ss_pred             CCCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHH--Hhhhc
Confidence            77665  67888889988888887765  5678888888888888877643  88888888888888777633  266  


Q ss_pred             -----cEEEccCCCCCCccc-cccCCCCcEEEcCCCcCCC
Q psy14728        238 -----ETLDVAYNKISIIQN-IAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       238 -----~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~  271 (319)
                           +.|++++|.++.++. +..+++|++|++++|++++
T Consensus       205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence                 888888888887653 6678888888888888876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.7e-18  Score=160.25  Aligned_cols=176  Identities=21%  Similarity=0.274  Sum_probs=152.4

Q ss_pred             cceEEEecCCcccCccc-cccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728         60 CIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~  138 (319)
                      +++.|+++++.++++|. +  +++|++|++++|.++.++  ..+++|++|++++|.++.+|.+..  +|+.|++++|.++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~  133 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLT  133 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCC
Confidence            89999999999998875 4  489999999999999777  678999999999999999887443  9999999999999


Q ss_pred             ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCC---
Q psy14728        139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL---  215 (319)
Q Consensus       139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L---  215 (319)
                      +++.  .+++|+.|++++|.+..++.  .+++|++|++++|.+..++.+.  ++|+.|++++|+++.+|.+..  +|   
T Consensus       134 ~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~  205 (571)
T 3cvr_A          134 MLPE--LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHS  205 (571)
T ss_dssp             CCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--------
T ss_pred             CCCC--cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhcc
Confidence            9887  78999999999999987665  5789999999999998887644  899999999999998876433  77   


Q ss_pred             ----CeEeccCCcCcCccc-cCCCCCccEEEccCCCCCC
Q psy14728        216 ----TQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISI  249 (319)
Q Consensus       216 ----~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~  249 (319)
                          +.|++++|.++.+|. +..+++|+.|++++|.+++
T Consensus       206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence                999999999999885 7779999999999999975

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=2.1e-19  Score=144.68  Aligned_cols=147  Identities=20%  Similarity=0.254  Sum_probs=85.3

Q ss_pred             cccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCcc--ccCCCCCCCccEEEcc
Q psy14728         56 SKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIRE--IKGLDHLANLEKLYLC  133 (319)
Q Consensus        56 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~l~~L~~L~l~  133 (319)
                      ..+++|+.|+++++.+..++.+..+++|++|++++|.++.++.+..+++|++|++++|.+..  .+.+..+++|++|+++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            55667777777777777666666777777777777766666666667777777777776664  3356666666666666


Q ss_pred             CCcccc--cCCCCCCCCccEEEccCCc-CcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCC
Q psy14728        134 SNKISK--IENVDHLKKLKVLELGDNK-IRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNR  202 (319)
Q Consensus       134 ~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~  202 (319)
                      +|.++.  ...+..+++|++|++++|. +..++.+..+++|+.|++++|.+.+++.+..+++|++|++++|+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence            666654  2244455555555555554 44444444444444444444444444344444444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=3.4e-21  Score=180.65  Aligned_cols=301  Identities=16%  Similarity=0.138  Sum_probs=173.5

Q ss_pred             ceEEEEEeeeccc--------cccccccCCCCcchhhhhccCc--hhhcccccccceEEEecCCcccCc-----cc-ccc
Q psy14728         16 NLVTLNVEAVENT--------HGNQMSLDNPDEESEAETTESK--AEDEESKEVCIERLLLRWNLIKKI-----EN-IHM   79 (319)
Q Consensus        16 ~l~~l~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l-----~~-~~~   79 (319)
                      +++.++++.+...        ...+..|+.++++.+...+...  .......+++|+.|+++++.++++     +. +..
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~  218 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN  218 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence            4777777665421        1134567777777776544322  123455677888888887777632     22 456


Q ss_pred             CCCCCEEEccCCCccCccC-CCCCCCCcEEEc---------------------------cCCCCccccC-CCCCCCccEE
Q psy14728         80 LTTLKELELYDNQLTVIEN-LDTLINLEILDL---------------------------SFNRIREIKG-LDHLANLEKL  130 (319)
Q Consensus        80 ~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l---------------------------~~~~~~~l~~-~~~l~~L~~L  130 (319)
                      +++|++|++++|.+..++. +..+++|++|++                           +++....++. +..+++|++|
T Consensus       219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred             CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence            7778888887776543322 344444444444                           4433333332 3446677777


Q ss_pred             EccCCcccccC---CCCCCCCccEEEccCCcCc--Cccc-cCCCCCccEEEcCC-----------CCCccc--cC-CCCC
Q psy14728        131 YLCSNKISKIE---NVDHLKKLKVLELGDNKIR--IIEN-LDGLTNLEELYLGK-----------NKISRI--DN-LASL  190 (319)
Q Consensus       131 ~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~--~~~~-l~~~~~L~~L~l~~-----------~~l~~~--~~-l~~~  190 (319)
                      ++++|.++...   .+..+++|++|++. +.+.  .+.. ...+++|++|+++.           +.++..  .. ...+
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~  377 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC  377 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence            77776654321   24566777777766 2221  1111 23456777777772           233321  11 3346


Q ss_pred             CCCCEEECCCCCCCC--CcCCc-CCCCCCeEecc----CCcCcCcc------c-cCCCCCccEEEccCCC--CCC--ccc
Q psy14728        191 TKLNILSLQCNRLRT--IENLE-ALTNLTQLYLS----ENGLTTIE------N-LLSNEKLETLDVAYNK--ISI--IQN  252 (319)
Q Consensus       191 ~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~----~~~~~~~~------~-~~~~~~L~~L~l~~~~--~~~--~~~  252 (319)
                      ++|++|+++.+.++.  +..+. .+++|++|+++    .+.+++.|      . +..+++|++|++++|.  ++.  +..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            777777776666654  22233 36777777775    34555431      1 4457778888886543  332  222


Q ss_pred             c-ccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        253 I-AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       253 l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      + ..+++|++|++++|++++......+.++++|+.|++++|+++.. .. ......+++|+.|++++|
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AI-AAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-HH-HHHHHHCSSCCEEEEESC
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-HH-HHHHHhcCccCeeECcCC
Confidence            3 24777888888888877644445567778888888888886432 11 234457888888888776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=4.4e-19  Score=142.84  Aligned_cols=149  Identities=20%  Similarity=0.335  Sum_probs=101.6

Q ss_pred             cccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccc--cCCCCCCCCccEEEc
Q psy14728         77 IHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISK--IENVDHLKKLKVLEL  154 (319)
Q Consensus        77 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l  154 (319)
                      ...+++|++|++++|.++.++.+..+++|++|++++|.+..++.+..+++|++|++++|.++.  ...+..+++|++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            367888999999999888777788888999999998888777777888888888888888875  446667777777777


Q ss_pred             cCCcCcC--ccccCCCCCccEEEcCCCC-CccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcC
Q psy14728        155 GDNKIRI--IENLDGLTNLEELYLGKNK-ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGL  225 (319)
Q Consensus       155 ~~~~~~~--~~~l~~~~~L~~L~l~~~~-l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  225 (319)
                      ++|.+..  +..+..+++|++|++++|. +..++.+..+++|++|++++|+++.++.+..+++|++|++++|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence            7776653  3445566666666666665 555544555555555555555555544444455555555555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.78  E-value=1.8e-17  Score=138.50  Aligned_cols=166  Identities=30%  Similarity=0.432  Sum_probs=125.7

Q ss_pred             CCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEcc
Q psy14728         81 TTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELG  155 (319)
Q Consensus        81 ~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~  155 (319)
                      ...++++++++.++.++. +.  ++|+.|++++|.+..++  .+..+++|++|++++|.++.++  .+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            567899999999987654 33  68999999999999876  4888999999999999999875  47889999999999


Q ss_pred             CCcCcCcc--ccCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc
Q psy14728        156 DNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE  229 (319)
Q Consensus       156 ~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~  229 (319)
                      +|.+..++  .+..+++|++|++++|.+..++.  +..+++|++|++++|+++.++.  +..+++|++|++++|++++++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99887543  45677888888888887776632  5667777777777777766543  566677777777777766654


Q ss_pred             c--cCCCCCccEEEccCCCCC
Q psy14728        230 N--LLSNEKLETLDVAYNKIS  248 (319)
Q Consensus       230 ~--~~~~~~L~~L~l~~~~~~  248 (319)
                      .  +..+++|+.|++++|.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBC
T ss_pred             HHHHhCCCCCCEEEeeCCcee
Confidence            2  556666666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=3.1e-19  Score=155.64  Aligned_cols=233  Identities=17%  Similarity=0.181  Sum_probs=160.8

Q ss_pred             cceEEEecCCcccCccccccC--CCCCEEEccCCCccCc-cCCCCCCCCcEEEccCCCCcc--cc-CCCCCCCccEEEcc
Q psy14728         60 CIERLLLRWNLIKKIENIHML--TTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIRE--IK-GLDHLANLEKLYLC  133 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~  133 (319)
                      .++.++++++.+.. ..+..+  ++++.|+++++.+... +.+..+++|++|++++|.+..  ++ .+..+++|++|+++
T Consensus        48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             hheeeccccccCCH-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            47888998887762 234555  8899999999888743 446778999999999998764  44 46778899999999


Q ss_pred             CCccccc--CCCCCCCCccEEEccCC-cCcC--cc-ccCCCCCccEEEcCCC-CCccc---cCCCCCC-CCCEEECCCCC
Q psy14728        134 SNKISKI--ENVDHLKKLKVLELGDN-KIRI--IE-NLDGLTNLEELYLGKN-KISRI---DNLASLT-KLNILSLQCNR  202 (319)
Q Consensus       134 ~~~~~~~--~~~~~~~~L~~L~l~~~-~~~~--~~-~l~~~~~L~~L~l~~~-~l~~~---~~l~~~~-~L~~L~l~~~~  202 (319)
                      +|.++..  ..+..+++|++|++++| .+..  ++ .+..+++|++|++++| .+++.   ..+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            9887642  35667888899998888 4542  22 3566788888888888 66642   3356677 88888888884


Q ss_pred             --CC--CCc-CCcCCCCCCeEeccCCc-CcC--ccccCCCCCccEEEccCCC-CCC--ccccccCCCCcEEEcCCCcCCC
Q psy14728        203 --LR--TIE-NLEALTNLTQLYLSENG-LTT--IENLLSNEKLETLDVAYNK-ISI--IQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       203 --~~--~~~-~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~L~~L~l~~~~-~~~--~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                        ++  .++ .+..+++|++|++++|. +++  ++.+..+++|++|++++|. +..  +..+..+++|++|++++| +++
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence              43  232 24567888888888887 443  3457777888888888885 221  234677888888888888 554


Q ss_pred             CcccccccCCCCCcEEEcCCCcCcCC
Q psy14728        272 WNTVNVLENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       272 ~~~~~~~~~~~~L~~L~l~~n~~~~~  297 (319)
                      ... ..+.  .++..|++++|.++..
T Consensus       286 ~~~-~~l~--~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          286 GTL-QLLK--EALPHLQINCSHFTTI  308 (336)
T ss_dssp             TCH-HHHH--HHSTTSEESCCCSCCT
T ss_pred             HHH-HHHH--hhCcceEEecccCccc
Confidence            222 2221  2244455777777754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=2.2e-19  Score=158.31  Aligned_cols=219  Identities=21%  Similarity=0.208  Sum_probs=140.1

Q ss_pred             hcccccccceEEEecCCcccCcc------ccccCC-CCCEEEccCCCccCc--cCCCCC-----CCCcEEEccCCCCccc
Q psy14728         53 DEESKEVCIERLLLRWNLIKKIE------NIHMLT-TLKELELYDNQLTVI--ENLDTL-----INLEILDLSFNRIREI  118 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~~~~~--~~~~~l-----~~L~~L~l~~~~~~~l  118 (319)
                      ..+...++|+.|++++|.+++.+      .+..++ +|++|++++|.++..  ..+..+     ++|++|++++|.+...
T Consensus        16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK   95 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence            44445556888888888887653      356777 888888888887743  223332     7888888888887754


Q ss_pred             c------CCCCC-CCccEEEccCCcccccC------CCCC-CCCccEEEccCCcCcCc------cccCCCC-CccEEEcC
Q psy14728        119 K------GLDHL-ANLEKLYLCSNKISKIE------NVDH-LKKLKVLELGDNKIRII------ENLDGLT-NLEELYLG  177 (319)
Q Consensus       119 ~------~~~~l-~~L~~L~l~~~~~~~~~------~~~~-~~~L~~L~l~~~~~~~~------~~l~~~~-~L~~L~l~  177 (319)
                      +      .+..+ ++|++|++++|.++..+      .+.. .++|++|++++|.+...      ..+...+ +|++|+++
T Consensus        96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A           96 SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence            3      13344 67888888888877643      1334 35788888888776521      1223343 77788887


Q ss_pred             CCCCcccc------CCCCC-CCCCEEECCCCCCCC-----Cc-CCcC-CCCCCeEeccCCcCcCcc------ccCCCCCc
Q psy14728        178 KNKISRID------NLASL-TKLNILSLQCNRLRT-----IE-NLEA-LTNLTQLYLSENGLTTIE------NLLSNEKL  237 (319)
Q Consensus       178 ~~~l~~~~------~l~~~-~~L~~L~l~~~~~~~-----~~-~~~~-~~~L~~L~l~~~~~~~~~------~~~~~~~L  237 (319)
                      +|.+.+..      .+... ++|++|++++|.+..     ++ .+.. .++|++|++++|.++..+      .+..+++|
T Consensus       176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L  255 (362)
T 3goz_A          176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL  255 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC
T ss_pred             CCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc
Confidence            77766542      23344 477777777777765     22 1322 457777777777776542      14556777


Q ss_pred             cEEEccCCCCCCc---------cccccCCCCcEEEcCCCcCCC
Q psy14728        238 ETLDVAYNKISII---------QNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       238 ~~L~l~~~~~~~~---------~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      ++|++++|.+..+         ..+..+++|++|++++|++.+
T Consensus       256 ~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             SEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             cEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            7777777764322         235566677777777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=2e-19  Score=156.89  Aligned_cols=208  Identities=19%  Similarity=0.199  Sum_probs=99.5

Q ss_pred             CCEEEccCCCccCccCCCCC--CCCcEEEccCCCCcccc-CCCCCCCccEEEccCCcccc--cC-CCCCCCCccEEEccC
Q psy14728         83 LKELELYDNQLTVIENLDTL--INLEILDLSFNRIREIK-GLDHLANLEKLYLCSNKISK--IE-NVDHLKKLKVLELGD  156 (319)
Q Consensus        83 L~~L~l~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~  156 (319)
                      ++.++++++.+. ...+..+  +.++.|+++++.+...+ .+..+++|++|++++|.++.  ++ .+..+++|++|++++
T Consensus        49 ~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~  127 (336)
T 2ast_B           49 WQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG  127 (336)
T ss_dssp             SSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             heeeccccccCC-HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC
Confidence            455555555443 1112333  45555555555544332 34445555555555555443  22 344555555555555


Q ss_pred             CcCc--CccccCCCCCccEEEcCCC-CCcc--cc-CCCCCCCCCEEECCCC-CCCC--Cc-CCcCCC-CCCeEeccCCc-
Q psy14728        157 NKIR--IIENLDGLTNLEELYLGKN-KISR--ID-NLASLTKLNILSLQCN-RLRT--IE-NLEALT-NLTQLYLSENG-  224 (319)
Q Consensus       157 ~~~~--~~~~l~~~~~L~~L~l~~~-~l~~--~~-~l~~~~~L~~L~l~~~-~~~~--~~-~~~~~~-~L~~L~l~~~~-  224 (319)
                      |.+.  .+..+..+++|++|++++| .+++  ++ .+..+++|++|++++| .++.  ++ .+..++ +|++|++++|. 
T Consensus       128 ~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~  207 (336)
T 2ast_B          128 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  207 (336)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence            5543  1223444555555555555 3332  21 2444555555555555 4443  11 134445 55555555552 


Q ss_pred             -Cc--Cccc-cCCCCCccEEEccCCC-CCC--ccccccCCCCcEEEcCCCc-CCCCcccccccCCCCCcEEEcCCC
Q psy14728        225 -LT--TIEN-LLSNEKLETLDVAYNK-ISI--IQNIAHLTELQEFWINDNQ-VSDWNTVNVLENNKQLQTIYLDRN  292 (319)
Q Consensus       225 -~~--~~~~-~~~~~~L~~L~l~~~~-~~~--~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n  292 (319)
                       ++  .++. +..+++|++|++++|. ++.  ++.+..+++|++|++++|. ++. .....+..+++|+.|++++|
T Consensus       208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTS
T ss_pred             cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-HHHHHHhcCCCCCEEeccCc
Confidence             22  2222 3445555555555555 332  3345555555555555553 222 11223445555555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=2e-19  Score=158.63  Aligned_cols=235  Identities=20%  Similarity=0.226  Sum_probs=167.9

Q ss_pred             EEEecCCcccCc-cccc-cCCCCCEEEccCCCccCc------cCCCCCC-CCcEEEccCCCCcccc--CCCCC-----CC
Q psy14728         63 RLLLRWNLIKKI-ENIH-MLTTLKELELYDNQLTVI------ENLDTLI-NLEILDLSFNRIREIK--GLDHL-----AN  126 (319)
Q Consensus        63 ~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~~~------~~~~~l~-~L~~L~l~~~~~~~l~--~~~~l-----~~  126 (319)
                      .+.++++.+++. +.+. ..++|++|++++|.++..      ..+..++ +|++|++++|.+....  .+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            356778888764 4444 445599999999988754      3366777 8999999999887643  23332     88


Q ss_pred             ccEEEccCCcccccC------CCCCC-CCccEEEccCCcCcCcc--c----cCC-CCCccEEEcCCCCCccc------cC
Q psy14728        127 LEKLYLCSNKISKIE------NVDHL-KKLKVLELGDNKIRIIE--N----LDG-LTNLEELYLGKNKISRI------DN  186 (319)
Q Consensus       127 L~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~~~~~~~~--~----l~~-~~~L~~L~l~~~~l~~~------~~  186 (319)
                      |++|++++|.++...      .+..+ ++|++|++++|.+....  .    +.. .++|++|++++|.+.+.      ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999887643      24445 78999999999886432  1    333 36899999999987753      22


Q ss_pred             CCCCC-CCCEEECCCCCCCCCc------CCcCC-CCCCeEeccCCcCcC-----ccc-cCC-CCCccEEEccCCCCCCcc
Q psy14728        187 LASLT-KLNILSLQCNRLRTIE------NLEAL-TNLTQLYLSENGLTT-----IEN-LLS-NEKLETLDVAYNKISIIQ  251 (319)
Q Consensus       187 l~~~~-~L~~L~l~~~~~~~~~------~~~~~-~~L~~L~l~~~~~~~-----~~~-~~~-~~~L~~L~l~~~~~~~~~  251 (319)
                      +...+ +|++|++++|+++...      .+... ++|++|++++|.++.     ++. +.. +++|++|++++|.++...
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            34444 8999999999886542      23444 589999999999886     332 333 468999999999887642


Q ss_pred             ------ccccCCCCcEEEcCCCcCCCCcc------cccccCCCCCcEEEcCCCcCcCC
Q psy14728        252 ------NIAHLTELQEFWINDNQVSDWNT------VNVLENNKQLQTIYLDRNPVAQD  297 (319)
Q Consensus       252 ------~l~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~~L~~L~l~~n~~~~~  297 (319)
                            .+..+++|++|++++|.+.....      ...+..+++|+.|++++|++...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                  25677889999999998444221      13456778888999999988765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=4.4e-20  Score=173.10  Aligned_cols=283  Identities=14%  Similarity=0.089  Sum_probs=157.4

Q ss_pred             cCCCCcchhhhhccCchhhcccccccceEEEecCCcccCc-----cc-cccCCCCCEEEccCCCccCc-----cC-CCCC
Q psy14728         35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRWNLIKKI-----EN-IHMLTTLKELELYDNQLTVI-----EN-LDTL  102 (319)
Q Consensus        35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~~~~~-----~~-~~~l  102 (319)
                      ++.++++.+..............+++|++|++++|.+.+.     +. ...+++|++|+++++.++.+     .. +.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            5555555544222111222334677777777777766532     11 34567777777777766522     11 3567


Q ss_pred             CCCcEEEccCCCCcccc-CCCCCCCccEEEccCCccc-----ccCCCCCCCCccEEEccCCcCcCcc-ccCCCCCccEEE
Q psy14728        103 INLEILDLSFNRIREIK-GLDHLANLEKLYLCSNKIS-----KIENVDHLKKLKVLELGDNKIRIIE-NLDGLTNLEELY  175 (319)
Q Consensus       103 ~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~  175 (319)
                      ++|++|++++|.+..++ .+..+++|++|+++.....     ....+..+++|+.+.+.......++ .+..+++|++|+
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence            77778877777766554 2444566666666532211     0113445555666655554333222 233455666666


Q ss_pred             cCCCCCccc---cCCC------------------------CCCCCCEEECCC-----------CCCCC--CcC-CcCCCC
Q psy14728        176 LGKNKISRI---DNLA------------------------SLTKLNILSLQC-----------NRLRT--IEN-LEALTN  214 (319)
Q Consensus       176 l~~~~l~~~---~~l~------------------------~~~~L~~L~l~~-----------~~~~~--~~~-~~~~~~  214 (319)
                      +++|.+...   ..+.                        .+++|++|++++           +.++.  +.. ...+++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE  379 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence            666553321   1123                        345556666552           22221  111 234566


Q ss_pred             CCeEeccCCcCcCc--cccC-CCCCccEEEcc----CCCCCCc------c-ccccCCCCcEEEcCCCc--CCCCcccccc
Q psy14728        215 LTQLYLSENGLTTI--ENLL-SNEKLETLDVA----YNKISII------Q-NIAHLTELQEFWINDNQ--VSDWNTVNVL  278 (319)
Q Consensus       215 L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~----~~~~~~~------~-~l~~~~~L~~L~l~~n~--~~~~~~~~~~  278 (319)
                      |+.|+++.+.+++.  ..+. .+++|++|+++    .+.+++.      + .+.++++|++|++++|.  +++.......
T Consensus       380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence            77777765665532  2233 36778888875    4455542      1 14567888888887543  5553332333


Q ss_pred             cCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        279 ENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       279 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ..+++|+.|++++|+++....  ..+...|++|+.|++++|
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGL--MEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHH--HHHHTCCTTCCEEEEESC
T ss_pred             HhCccceEeeccCCCCCHHHH--HHHHhcCcccCeeeccCC
Confidence            468899999999998765322  235678999999999987

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=4.7e-17  Score=142.69  Aligned_cols=207  Identities=22%  Similarity=0.279  Sum_probs=115.0

Q ss_pred             ccceEEEecCCcccCccc--cccCCCCCEEEccCCCcc-Ccc--CCCCCCCCcE-EEccCCCCcccc--CCCCCCCccEE
Q psy14728         59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLT-VIE--NLDTLINLEI-LDLSFNRIREIK--GLDHLANLEKL  130 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~-~~~--~~~~l~~L~~-L~l~~~~~~~l~--~~~~l~~L~~L  130 (319)
                      +++++|++++|.|+.++.  |.++++|++|+|++|++. .++  .+.+++++++ +.+..|.+..++  .+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            456666676666666642  566666777777666653 222  2556665554 344556666654  35566666666


Q ss_pred             EccCCcccccCC--CCCCCCccEEEccC-CcCcCcc--ccCCC-CCccEEEcCCCCCccc-cCCCCCCCCCEEECCC-CC
Q psy14728        131 YLCSNKISKIEN--VDHLKKLKVLELGD-NKIRIIE--NLDGL-TNLEELYLGKNKISRI-DNLASLTKLNILSLQC-NR  202 (319)
Q Consensus       131 ~l~~~~~~~~~~--~~~~~~L~~L~l~~-~~~~~~~--~l~~~-~~L~~L~l~~~~l~~~-~~l~~~~~L~~L~l~~-~~  202 (319)
                      ++++|.++.++.  +....++..+++.+ +.+..++  .+..+ ..++.|++++|.++.+ +......+++++.+.+ |.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            666666666543  23334455555543 3333222  23333 3466666666666655 2333445566666653 45


Q ss_pred             CCCCcC--CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCC-CCCCccccccCCCCcEEEcCC
Q psy14728        203 LRTIEN--LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYN-KISIIQNIAHLTELQEFWIND  266 (319)
Q Consensus       203 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~  266 (319)
                      ++.++.  +..+++|+.|++++|+++.+|. ..+.+|++|.+.++ .++.++.+..+++|+.+++.+
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             ccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            555543  5566666666666666666653 22445555554433 345555566666666666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=3.7e-20  Score=173.67  Aligned_cols=85  Identities=11%  Similarity=0.056  Sum_probs=41.7

Q ss_pred             CCCCCccEEEccCCCCCC--cccccc-CCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhC
Q psy14728        232 LSNEKLETLDVAYNKISI--IQNIAH-LTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC  308 (319)
Q Consensus       232 ~~~~~L~~L~l~~~~~~~--~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  308 (319)
                      ..+++|++|++++ .++.  ++.+.. +++|++|++++|.+++........++++|+.|++++|+++.. .. ......+
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~-~~~~~~l  505 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-AL-LANASKL  505 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-HH-HHTGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-HH-HHHHHhC
Confidence            3445555555544 3321  122222 556666666666655432222224566666666666665221 11 1233445


Q ss_pred             CceEEEecccC
Q psy14728        309 PWIVQIDATLA  319 (319)
Q Consensus       309 ~~L~~l~~~~C  319 (319)
                      ++|+.|++++|
T Consensus       506 ~~L~~L~l~~~  516 (594)
T 2p1m_B          506 ETMRSLWMSSC  516 (594)
T ss_dssp             GGSSEEEEESS
T ss_pred             CCCCEEeeeCC
Confidence            66666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=4.5e-21  Score=178.04  Aligned_cols=125  Identities=24%  Similarity=0.343  Sum_probs=113.1

Q ss_pred             CCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCC
Q psy14728        192 KLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVS  270 (319)
Q Consensus       192 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~  270 (319)
                      .|+.|++++|.++.+|.++.+++|+.|++++|.++.+|. +..+++|+.|++++|.+++++.+..+++|++|++++|+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            488999999999998888999999999999999998874 8899999999999999999989999999999999999999


Q ss_pred             CCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728        271 DWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA  316 (319)
Q Consensus       271 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~  316 (319)
                      +...+..+..+++|+.|++++|+++..+.....+...+|+|+.|++
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8643578899999999999999999988776677888999999975

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=2.3e-16  Score=138.35  Aligned_cols=224  Identities=21%  Similarity=0.245  Sum_probs=164.7

Q ss_pred             eEEEecCCcccCccc-cccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcc-cc--CCCCCCCccE-EEccC
Q psy14728         62 ERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIRE-IK--GLDHLANLEK-LYLCS  134 (319)
Q Consensus        62 ~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~-l~--~~~~l~~L~~-L~l~~  134 (319)
                      ++++.+++.++.+|. +  .+++++|+|++|+++.++  .|.++++|++|++++|.+.. ++  .+..++++.+ +.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            567888888888874 4  368999999999998664  38889999999999998754 54  3677777765 55667


Q ss_pred             CcccccC--CCCCCCCccEEEccCCcCcCccc--cCCCCCccEEEcCC-CCCcccc--CCCCC-CCCCEEECCCCCCCCC
Q psy14728        135 NKISKIE--NVDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGK-NKISRID--NLASL-TKLNILSLQCNRLRTI  206 (319)
Q Consensus       135 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~-~~l~~~~--~l~~~-~~L~~L~l~~~~~~~~  206 (319)
                      |+++.++  .+..+++|++|++++|.+..++.  +....++..+++.. +.+..++  .+..+ ..++.|++++|+++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            8888764  57888999999999988876543  34456677777755 4455552  34444 3578899999999887


Q ss_pred             cC-CcCCCCCCeEeccC-CcCcCccc--cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCC-cCCCCcccccccCC
Q psy14728        207 EN-LEALTNLTQLYLSE-NGLTTIEN--LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDN-QVSDWNTVNVLENN  281 (319)
Q Consensus       207 ~~-~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~  281 (319)
                      +. .....+++++.+.+ |.++.+|.  +..+++|+.|++++|+++.++. ..+.+|+.|.+.++ .+...   ..+..+
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~l---P~l~~l  245 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKL---PTLEKL  245 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCC---CCTTTC
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcC---CCchhC
Confidence            54 44567888998875 67888764  6888999999999999988763 33567777777665 34433   346778


Q ss_pred             CCCcEEEcCC
Q psy14728        282 KQLQTIYLDR  291 (319)
Q Consensus       282 ~~L~~L~l~~  291 (319)
                      ++|+.+++.+
T Consensus       246 ~~L~~l~l~~  255 (350)
T 4ay9_X          246 VALMEASLTY  255 (350)
T ss_dssp             CSCCEEECSC
T ss_pred             cChhhCcCCC
Confidence            8899998875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=6.9e-16  Score=127.06  Aligned_cols=165  Identities=24%  Similarity=0.291  Sum_probs=117.9

Q ss_pred             ccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCc
Q psy14728        149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENG  224 (319)
Q Consensus       149 L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~  224 (319)
                      .+.++++++.+..++. .-.++|++|++++|.+..+  ..+..+++|+.|++++|++..++.  +..+++|+.|++++|+
T Consensus        21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            3445555555544432 1126777777777777665  346677788888888888877653  6778888888888888


Q ss_pred             CcCccc--cCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh--
Q psy14728        225 LTTIEN--LLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN--  299 (319)
Q Consensus       225 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--  299 (319)
                      ++.++.  +..+++|+.|++++|.++.++ .+..+++|++|++++|+++..+. ..+..+++|+.|++++|++.+.+.  
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchh
Confidence            887764  677888999999998888764 57888999999999999887543 567888999999999999998775  


Q ss_pred             --hHHHHHHhCCceEEEe
Q psy14728        300 --YRRKIKLVCPWIVQID  315 (319)
Q Consensus       300 --~~~~~~~~~~~L~~l~  315 (319)
                        +...+....+.+..++
T Consensus       179 ~~l~~~~~~~~~~~~~~~  196 (229)
T 3e6j_A          179 MYLRNWVADHTSIAMRWD  196 (229)
T ss_dssp             HHHHHHHHHCGGGEEEES
T ss_pred             HHHHHHHHhCcccccccc
Confidence              2223334444554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.71  E-value=2.3e-17  Score=130.24  Aligned_cols=134  Identities=23%  Similarity=0.332  Sum_probs=94.8

Q ss_pred             CCCCCCCCCEEECCCCCCCCCcCCcCCC-CCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCcc-c-cccCCCCcEE
Q psy14728        186 NLASLTKLNILSLQCNRLRTIENLEALT-NLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQ-N-IAHLTELQEF  262 (319)
Q Consensus       186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-l~~~~~L~~L  262 (319)
                      .+..+++|++|++++|+++.++.+..+. +|+.|++++|.+++++.+..+++|++|++++|.++.++ . +..+++|++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3455666777777777776665554444 77777777777777766777777777777777777654 2 4677788888


Q ss_pred             EcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        263 WINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       263 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ++++|++++++....+..+++|+.|++++|++...+.++...+..+|+|+.||++.+
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            888887776544346677778888888888887777766666777888888877653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=9.8e-16  Score=125.33  Aligned_cols=150  Identities=21%  Similarity=0.315  Sum_probs=110.6

Q ss_pred             EEEccCCcCcCccc-cCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCC--cCCcCCCCCCeEeccCCcC
Q psy14728        151 VLELGDNKIRIIEN-LDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGL  225 (319)
Q Consensus       151 ~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~  225 (319)
                      .++++++.+..++. +.  ++++.|++++|.+..++  .+..+++|+.|++++|+++.+  ..+..+++|+.|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            44555554443332 21  46777777777766653  466777777777777777665  3477788888888888888


Q ss_pred             cCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhH
Q psy14728        226 TTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYR  301 (319)
Q Consensus       226 ~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  301 (319)
                      +.++.  +..+++|+.|++++|.++.+  ..+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++...
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            87764  67788888888888888875  35788899999999999998854 356778899999999999999988875


Q ss_pred             HH
Q psy14728        302 RK  303 (319)
Q Consensus       302 ~~  303 (319)
                      +.
T Consensus       172 ~l  173 (220)
T 2v9t_B          172 WL  173 (220)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=3.8e-16  Score=126.64  Aligned_cols=162  Identities=25%  Similarity=0.347  Sum_probs=84.1

Q ss_pred             CEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcC
Q psy14728         84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRI  161 (319)
Q Consensus        84 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  161 (319)
                      +.++++++.++.++. ...++|++|++++|.+..++.  +..+++|++|++++|.++.++.                   
T Consensus        10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------   69 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-------------------   69 (208)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------------------
T ss_pred             CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-------------------
Confidence            345555555544331 123456666666666555442  4455555555555555554431                   


Q ss_pred             ccccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCC
Q psy14728        162 IENLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNE  235 (319)
Q Consensus       162 ~~~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~  235 (319)
                       ..+..+++|++|++++|.+..++  .+..+++|++|++++|+++.++.  +..+++|++|++++|.+++++.  +..++
T Consensus        70 -~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  148 (208)
T 2o6s_A           70 -GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  148 (208)
T ss_dssp             -TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             -hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence             01334444444444444444432  13455555555555555554432  4555666666666666655543  45556


Q ss_pred             CccEEEccCCCCCCccccccCCCCcEEEcCCCcCCC
Q psy14728        236 KLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       236 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      +|++|++++|.+.     ..+++|++|+++.|++++
T Consensus       149 ~L~~L~l~~N~~~-----~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          149 SLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             TCCEEECCSCCBC-----CCTTTTHHHHHHHHHCTT
T ss_pred             CccEEEecCCCee-----cCCCCHHHHHHHHHhCCc
Confidence            6666666666432     344566666666666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=3.7e-16  Score=137.61  Aligned_cols=175  Identities=24%  Similarity=0.328  Sum_probs=110.3

Q ss_pred             cEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccC-CCCCccEEEcCCCCCccc
Q psy14728        106 EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLD-GLTNLEELYLGKNKISRI  184 (319)
Q Consensus       106 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~  184 (319)
                      +.++++++.++.+|.- -.+.++.|++++|.++.++.                    ..+. .+++|++|++++|.+..+
T Consensus        21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~--------------------~~~~~~l~~L~~L~L~~N~i~~i   79 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRA--------------------EWTPTRLTNLHSLLLSHNHLNFI   79 (361)
T ss_dssp             TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECT--------------------TSSSSCCTTCCEEECCSSCCCEE
T ss_pred             CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccCh--------------------hhhhhcccccCEEECCCCcCCcc
Confidence            4566676666666531 12346666666666665431                    1122 344555555555554444


Q ss_pred             c--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCccc--c---
Q psy14728        185 D--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQN--I---  253 (319)
Q Consensus       185 ~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--l---  253 (319)
                      +  .+..+++|++|++++|+++.++.  +..+++|+.|++++|.++.++  .+..+++|++|++++|.++.++.  +   
T Consensus        80 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~  159 (361)
T 2xot_A           80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG  159 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred             ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence            2  35555666666666666655432  566677777777777777653  36677778888888887776542  2   


Q ss_pred             ccCCCCcEEEcCCCcCCCCcccccccCCCC--CcEEEcCCCcCcCChhhHH
Q psy14728        254 AHLTELQEFWINDNQVSDWNTVNVLENNKQ--LQTIYLDRNPVAQDPNYRR  302 (319)
Q Consensus       254 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~  302 (319)
                      ..+++|++|++++|+++..+. ..+..++.  ++.|++++|++.+++...+
T Consensus       160 ~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~l~~  209 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKLYQ  209 (361)
T ss_dssp             --CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred             ccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcCcHH
Confidence            568889999999998887543 45666666  4789999999999987644

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1.8e-18  Score=162.24  Aligned_cols=104  Identities=7%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             CCCCCeEeccCCcCcCc--ccc-CCCCCccEEEcc--C----CCCCCcc-------ccccCCCCcEEEcCCCcCCCCccc
Q psy14728        212 LTNLTQLYLSENGLTTI--ENL-LSNEKLETLDVA--Y----NKISIIQ-------NIAHLTELQEFWINDNQVSDWNTV  275 (319)
Q Consensus       212 ~~~L~~L~l~~~~~~~~--~~~-~~~~~L~~L~l~--~----~~~~~~~-------~l~~~~~L~~L~l~~n~~~~~~~~  275 (319)
                      +++|+.|.+..+.++..  ..+ ..+++|++|+++  +    +.++..+       .+..+++|++|++++ .+++... 
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-
Confidence            56666666655555532  222 356788888888  3    3454321       145678888888877 5665332 


Q ss_pred             cccc-CCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        276 NVLE-NNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       276 ~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      ..+. .+++|+.|++++|.++....  ..+...|++|+.|++++|
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCC
Confidence            3333 48899999999998755322  234467999999999987

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=1.2e-15  Score=124.76  Aligned_cols=132  Identities=21%  Similarity=0.345  Sum_probs=95.5

Q ss_pred             CccEEEcCCCCCcccc---CCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEc
Q psy14728        170 NLEELYLGKNKISRID---NLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDV  242 (319)
Q Consensus       170 ~L~~L~l~~~~l~~~~---~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l  242 (319)
                      .+++|++++|.+..++   .+..+++|+.|++++|+++.++  .+..+++|++|++++|.+++++.  +..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            4456666666665541   2556677777777777776653  36777778888888887777653  677788888888


Q ss_pred             cCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728        243 AYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR  302 (319)
Q Consensus       243 ~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  302 (319)
                      ++|.++.+  ..+..+++|++|++++|++++. .+..+..+++|+.|++++|++.+++...+
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  173 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFNCNCYLAW  173 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence            88888765  3477888888888888888874 33667788888888888888888877644

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=4e-16  Score=122.12  Aligned_cols=129  Identities=23%  Similarity=0.289  Sum_probs=81.0

Q ss_pred             CCCCEEECCCCCCC--CCcC-CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCC-ccc-cccCCCCcEEEcC
Q psy14728        191 TKLNILSLQCNRLR--TIEN-LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI-IQN-IAHLTELQEFWIN  265 (319)
Q Consensus       191 ~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-l~~~~~L~~L~l~  265 (319)
                      +++++|++++|.+.  .++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++. ++. +..+++|++|+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            45666666666655  3443 35566666666666666666556666666777777666665 433 3346677777777


Q ss_pred             CCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        266 DNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       266 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      +|++++++.+..+..+++|+.|++++|+++..+.+....+..+|+|+.|++++|
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            777666544455666677777777777777666655555666777777766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=4.2e-16  Score=119.46  Aligned_cols=129  Identities=22%  Similarity=0.316  Sum_probs=107.9

Q ss_pred             CCCCCEEECCCCCCC--CCcC-CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCC-ccc-cccCCCCcEEEc
Q psy14728        190 LTKLNILSLQCNRLR--TIEN-LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI-IQN-IAHLTELQEFWI  264 (319)
Q Consensus       190 ~~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-l~~~~~L~~L~l  264 (319)
                      .++++.|++++|.++  .++. +..+++|+.|++++|.+++++.+..+++|++|++++|.++. ++. +..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            356778888888776  4544 57788889999999888888778888999999999999987 554 456899999999


Q ss_pred             CCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEeccc
Q psy14728        265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       265 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~  318 (319)
                      ++|++++.+.+..+..+++|+.|++++|+++..+.+....+..+|+|+.||+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999865557788999999999999999999887667889999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=1.5e-14  Score=117.20  Aligned_cols=159  Identities=26%  Similarity=0.392  Sum_probs=87.2

Q ss_pred             cEEEccCCcccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccC--CCCCCCCCEEECCCCCC
Q psy14728        128 EKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRL  203 (319)
Q Consensus       128 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~--l~~~~~L~~L~l~~~~~  203 (319)
                      +.++..++.++.++. ...+++++|+++++.+..++  .+..+++|++|++++|.+..++.  +..+++|++|++++|++
T Consensus        10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            455556655555442 12346666666666665333  24556666666666666655422  45566666666666666


Q ss_pred             CCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcCCCCccccc
Q psy14728        204 RTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNV  277 (319)
Q Consensus       204 ~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~  277 (319)
                      +.++.  +..+++|++|++++|++++++.  +..+++|++|++++|.++.++.  +..+++|++|++++|.+..      
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence            55432  4555666666666666655543  4555566666666665554432  4555566666666654432      


Q ss_pred             ccCCCCCcEEEcCCCcCc
Q psy14728        278 LENNKQLQTIYLDRNPVA  295 (319)
Q Consensus       278 ~~~~~~L~~L~l~~n~~~  295 (319)
                        .+++|+.|+++.|.++
T Consensus       163 --~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             --CTTTTHHHHHHHHHCT
T ss_pred             --CCCCHHHHHHHHHhCC
Confidence              2344555555554444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=4.9e-19  Score=164.40  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=100.9

Q ss_pred             CccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcC-CcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCC
Q psy14728        170 NLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN-LEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKIS  248 (319)
Q Consensus       170 ~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  248 (319)
                      .|+.|++++|.+++++.+..+++|+.|++++|.++.+|. ++.+++|+.|++++|.++++|.+..+++|+.|++++|.++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            588888988888888778888899999999999888754 8889999999999999999988899999999999999998


Q ss_pred             Cc---cccccCCCCcEEEcCCCcCCCCccc--ccccCCCCCcEEEc
Q psy14728        249 II---QNIAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYL  289 (319)
Q Consensus       249 ~~---~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l  289 (319)
                      ++   ..+..+++|+.|++++|.+++.+..  ..+..+|+|+.|++
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            75   4588999999999999999875321  23455889998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=5.9e-15  Score=129.89  Aligned_cols=164  Identities=24%  Similarity=0.323  Sum_probs=117.0

Q ss_pred             CEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CC-CCCCccEEEccCCcccccC--CCCCCCCccEEEccCCc
Q psy14728         84 KELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LD-HLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNK  158 (319)
Q Consensus        84 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~-~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~  158 (319)
                      +.++++++.++.++. .-.+.++.|++++|.++.++.  +. .+++|+.|++++|.++.++  .+..+++|++|++++|.
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            689999999887654 123568999999999998863  55 8999999999999999875  57888888888888888


Q ss_pred             CcCcc--ccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--C---cCCCCCCeEeccCCcCcCcc
Q psy14728        159 IRIIE--NLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--L---EALTNLTQLYLSENGLTTIE  229 (319)
Q Consensus       159 ~~~~~--~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~L~l~~~~~~~~~  229 (319)
                      +..++  .+..+++|+.|++++|.+..+  ..+..+++|+.|++++|+++.++.  +   ..+++|+.|++++|.++.++
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            76543  366778888888888877765  346667777777777777766543  2   34666666666666666554


Q ss_pred             c--cCCCCC--ccEEEccCCCCC
Q psy14728        230 N--LLSNEK--LETLDVAYNKIS  248 (319)
Q Consensus       230 ~--~~~~~~--L~~L~l~~~~~~  248 (319)
                      .  +..++.  ++.|++++|.+.
T Consensus       180 ~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          180 LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             HHHhhhccHhhcceEEecCCCcc
Confidence            2  344443  355666666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.61  E-value=2.1e-14  Score=117.40  Aligned_cols=140  Identities=29%  Similarity=0.437  Sum_probs=76.7

Q ss_pred             cEEEccCCCCccccC-CCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCC
Q psy14728        106 EILDLSFNRIREIKG-LDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNK  180 (319)
Q Consensus       106 ~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~  180 (319)
                      +.++++++.++.+|. +.  ++++.|++++|.++.++  .+..+++|++|++++|.+..+  ..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            467777777777763 22  56777777777777654  456666666666666666533  345555566666666555


Q ss_pred             CccccC--CCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCC
Q psy14728        181 ISRIDN--LASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKI  247 (319)
Q Consensus       181 l~~~~~--l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~  247 (319)
                      +..++.  +..+++|+.|++++|+++.++  .+..+++|+.|++++|.+++++.  +..+++|++|++++|.+
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            555422  344555555555555554432  24444445555555554444432  33444444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=2.3e-14  Score=117.10  Aligned_cols=143  Identities=21%  Similarity=0.334  Sum_probs=77.2

Q ss_pred             cEEEccCCCCccccCCCCCCCccEEEccCCcccccC---CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc
Q psy14728        106 EILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE---NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS  182 (319)
Q Consensus       106 ~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  182 (319)
                      +.++++++.++.+|.- ..+.++.|++++|.++.++   .+..+++|++|++++|                      .+.
T Consensus        14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N----------------------~i~   70 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----------------------KIT   70 (220)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS----------------------CCC
T ss_pred             CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC----------------------cCC
Confidence            3666666666666531 1234566666666666542   1344445555555544                      444


Q ss_pred             ccc--CCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccc
Q psy14728        183 RID--NLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIA  254 (319)
Q Consensus       183 ~~~--~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~  254 (319)
                      .++  .+..+++|++|++++|+++.++.  +..+++|++|++++|.+++++  .+..+++|+.|++++|.++.+  ..+.
T Consensus        71 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            432  34455555555555555554432  455555666666666555542  255556666666666666554  2355


Q ss_pred             cCCCCcEEEcCCCcCCC
Q psy14728        255 HLTELQEFWINDNQVSD  271 (319)
Q Consensus       255 ~~~~L~~L~l~~n~~~~  271 (319)
                      .+++|++|++++|.+..
T Consensus       151 ~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          151 TLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TCTTCCEEECCSCCEEC
T ss_pred             CCCCCCEEEecCcCCcC
Confidence            56666666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=4.1e-14  Score=116.40  Aligned_cols=146  Identities=27%  Similarity=0.365  Sum_probs=77.2

Q ss_pred             CcEEEccCCCCccccCCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc
Q psy14728        105 LEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS  182 (319)
Q Consensus       105 L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  182 (319)
                      -+.++.+++.+..+|.- ..++|+.|++++|.++.+.  .+..+++|++|++++|.+..++.                  
T Consensus        21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~------------------   81 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV------------------   81 (229)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------
T ss_pred             CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh------------------
Confidence            34566666666655531 1255666666666655542  34445555555555554443321                  


Q ss_pred             cccCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCcc-ccCCCCCccEEEccCCCCCCcc--ccccCC
Q psy14728        183 RIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIE-NLLSNEKLETLDVAYNKISIIQ--NIAHLT  257 (319)
Q Consensus       183 ~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~l~~~~  257 (319)
                        ..+..+++|+.|++++|+++.++.  +..+++|+.|++++|+++.+| .+..+++|+.|++++|.++.++  .+..++
T Consensus        82 --~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  159 (229)
T 3e6j_A           82 --GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS  159 (229)
T ss_dssp             --TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             --hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence              123445555555555555554432  445555556666666555554 2555566666666666665543  255566


Q ss_pred             CCcEEEcCCCcCCC
Q psy14728        258 ELQEFWINDNQVSD  271 (319)
Q Consensus       258 ~L~~L~l~~n~~~~  271 (319)
                      +|+.|++++|.+..
T Consensus       160 ~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          160 SLTHAYLFGNPWDC  173 (229)
T ss_dssp             TCCEEECTTSCBCT
T ss_pred             CCCEEEeeCCCccC
Confidence            66666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=7.8e-15  Score=127.43  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=71.3

Q ss_pred             CCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCc-EEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        212 LTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQ-EFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       212 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      +++|+.+++++|+++.++.  +..|++|+++++.++ +..+  .+|.+|++|+ .+++.+ .++.. ....|.+|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCE
Confidence            6778888888877777764  777788888888776 5544  3477888888 888877 55553 2256778888888


Q ss_pred             EEcCCCcCcCChhhHHHHHHhCCceEEEe
Q psy14728        287 IYLDRNPVAQDPNYRRKIKLVCPWIVQID  315 (319)
Q Consensus       287 L~l~~n~~~~~~~~~~~~~~~~~~L~~l~  315 (319)
                      +++++|.+..++..   .+..|++|+.+.
T Consensus       302 l~l~~n~i~~I~~~---aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDE---LFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTT---TTCTTCCCCEEE
T ss_pred             EEeCCCccCccchh---hhcCCcchhhhc
Confidence            88888877776653   567788887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=113.67  Aligned_cols=132  Identities=25%  Similarity=0.283  Sum_probs=95.5

Q ss_pred             CCCccEEEcCCCCCc--cccC-CCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcC-ccc-cCCCCCccEEEc
Q psy14728        168 LTNLEELYLGKNKIS--RIDN-LASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT-IEN-LLSNEKLETLDV  242 (319)
Q Consensus       168 ~~~L~~L~l~~~~l~--~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~L~l  242 (319)
                      .++++.|++++|.+.  .++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.+++ +|. +..+++|+.|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            356677777776665  4432 46667777777777777666567777888888888888777 554 445788888888


Q ss_pred             cCCCCCCc---cccccCCCCcEEEcCCCcCCCCcc--cccccCCCCCcEEEcCCCcCcCChh
Q psy14728        243 AYNKISII---QNIAHLTELQEFWINDNQVSDWNT--VNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       243 ~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      ++|.++.+   +.+..+++|++|++++|.+++.+.  ...+..+++|+.|++++|+....|.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            88888775   357788888888888888887542  1367788888888888888776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=4.7e-15  Score=116.91  Aligned_cols=130  Identities=23%  Similarity=0.269  Sum_probs=96.2

Q ss_pred             hcccccccceEEEecCCcccCccccccCC-CCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CCCCCCccE
Q psy14728         53 DEESKEVCIERLLLRWNLIKKIENIHMLT-TLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEK  129 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~  129 (319)
                      ..+..+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+..+++|++|++++|.+..++.  +..+++|++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34667888899999988888887766555 888999988888877778888888888888888887763  367788888


Q ss_pred             EEccCCcccccC---CCCCCCCccEEEccCCcCcCccc-----cCCCCCccEEEcCCCCCc
Q psy14728        130 LYLCSNKISKIE---NVDHLKKLKVLELGDNKIRIIEN-----LDGLTNLEELYLGKNKIS  182 (319)
Q Consensus       130 L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~  182 (319)
                      |++++|.++.++   .+..+++|+.|++++|.+...+.     +..+++|+.|+++.+...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888877654   35667777777777776654432     455666666666666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.1e-13  Score=110.58  Aligned_cols=130  Identities=20%  Similarity=0.256  Sum_probs=105.3

Q ss_pred             cEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCC
Q psy14728        172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKIS  248 (319)
Q Consensus       172 ~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~  248 (319)
                      +.++++++.+..++.- -.+++++|++++|.++.++ .+..+++|+.|++++|.++.++.  +..+++|++|++++|.++
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            5677777777766431 1357888888888888775 47788999999999999988764  788899999999999998


Q ss_pred             Ccc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHH
Q psy14728        249 IIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRK  303 (319)
Q Consensus       249 ~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  303 (319)
                      .++  .+..+++|++|++++|+++..+ ...+..+++|+.|++++|++.+++...+.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c~l~~l  147 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCDCNMQWL  147 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence            764  4888999999999999999753 25678899999999999999999887553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=1.2e-13  Score=110.38  Aligned_cols=129  Identities=24%  Similarity=0.248  Sum_probs=97.3

Q ss_pred             cEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcC---CcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCC
Q psy14728        172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN---LEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNK  246 (319)
Q Consensus       172 ~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~  246 (319)
                      +.++++++.+..++.- -..++++|++++|++..++.   +..+++|++|++++|++++++  .+..+++|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            5677777777666431 12377888888888777542   677888888888888888763  37788888888888888


Q ss_pred             CCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728        247 ISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR  302 (319)
Q Consensus       247 ~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  302 (319)
                      ++.++  .+..+++|++|++++|++++. .+..+..+++|+.|++++|++.+++...+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  146 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence            88653  377888899999999988873 34667788889999999999988877544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=3e-14  Score=109.04  Aligned_cols=124  Identities=24%  Similarity=0.303  Sum_probs=98.7

Q ss_pred             CCCccEEEcCCCCCc--ccc-CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcC-ccc-cCCCCCccEEEc
Q psy14728        168 LTNLEELYLGKNKIS--RID-NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTT-IEN-LLSNEKLETLDV  242 (319)
Q Consensus       168 ~~~L~~L~l~~~~l~--~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~-~~~~~~L~~L~l  242 (319)
                      .++++.|++++|.+.  .++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+++ +|. +..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            467888888888776  443 457788888888888888877668888899999999999887 665 455889999999


Q ss_pred             cCCCCCCc---cccccCCCCcEEEcCCCcCCCCccc--ccccCCCCCcEEEcCC
Q psy14728        243 AYNKISII---QNIAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTIYLDR  291 (319)
Q Consensus       243 ~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~  291 (319)
                      ++|.++.+   ..+..+++|++|++++|.+++.+..  ..+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99998875   5688899999999999999875431  3678889999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=1.9e-16  Score=127.46  Aligned_cols=132  Identities=27%  Similarity=0.499  Sum_probs=100.7

Q ss_pred             CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccccccCCCCcEEEc
Q psy14728        186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWI  264 (319)
Q Consensus       186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l  264 (319)
                      .+..+++|++|++++|.++.++.+..+++|+.|++++|.++.+|. +..+++|+.|++++|.++.++.+..+++|++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence            455677777777777777777667777888888888888887765 4455788888888888888777778888888888


Q ss_pred             CCCcCCCCcccccccCCCCCcEEEcCCCcCcCC-------hhhHHHHHHhCCceEEEecc
Q psy14728        265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD-------PNYRRKIKLVCPWIVQIDAT  317 (319)
Q Consensus       265 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~~~~L~~l~~~  317 (319)
                      ++|++++++....+..+++|+.|++++|++.+.       ..+....+..+|+|+.||..
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~  182 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence            888888755445677888888888888888765       44555667888888888743

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=7.5e-13  Score=104.28  Aligned_cols=127  Identities=24%  Similarity=0.359  Sum_probs=99.6

Q ss_pred             ccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCC
Q psy14728        171 LEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNK  246 (319)
Q Consensus       171 L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~  246 (319)
                      .+.+++.++.+..++. ...+++++|++++|+++.++.  +..+++|++|++++|.+++++.  +..+++|+.|++++|.
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4567777777666642 223678888888888877643  6778889999999998888764  6788899999999999


Q ss_pred             CCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        247 ISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       247 ~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      ++.++.  +..+++|++|++++|.++..+ ...+..+++|+.|++++|++.+.+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccCc
Confidence            887643  678899999999999998743 2556788999999999999998876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=1.1e-13  Score=120.13  Aligned_cols=227  Identities=16%  Similarity=0.139  Sum_probs=152.4

Q ss_pred             cccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCccCCCC--------CCCCcEEEccCCCCcccc--CCCCCCC
Q psy14728         58 EVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIENLDT--------LINLEILDLSFNRIREIK--GLDHLAN  126 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~l~--~~~~l~~  126 (319)
                      +++|+.|+|++|.+..+.. -+.++.++.+.+..+.+.. ..|.+        |++|+.++++. .++.++  .+..+++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCH-HHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence            7889999999999883321 1233334555555553321 22555        78888888887 677665  4777888


Q ss_pred             ccEEEccCCcccccC--CCCCCCCccEEEccCCcC----cCcc--ccCCCCCcc--------------------------
Q psy14728        127 LEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKI----RIIE--NLDGLTNLE--------------------------  172 (319)
Q Consensus       127 L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~----~~~~--~l~~~~~L~--------------------------  172 (319)
                      |+.+++.+|.+..++  .+..+.++..+.......    ..+.  .+..+..|+                          
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~  205 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN  205 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred             cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence            888888888776654  556666666665544211    1111  122233333                          


Q ss_pred             EEEcCCCCCcc-ccCC-CCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCcc-EEEccCC
Q psy14728        173 ELYLGKNKISR-IDNL-ASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLE-TLDVAYN  245 (319)
Q Consensus       173 ~L~l~~~~l~~-~~~l-~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~-~L~l~~~  245 (319)
                      .+.+.+.-... ...+ ..+++|+.+++++|+++.++.  +..+++|+++++.++ ++.++.  +..|++|+ .+++.+ 
T Consensus       206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence            23222211000 0011 137899999999999988764  889999999999987 777764  88999999 999998 


Q ss_pred             CCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEc
Q psy14728        246 KISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL  289 (319)
Q Consensus       246 ~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  289 (319)
                      .++.+  .++.+|++|+.+++++|.++..+ ...|.++++|+.++.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLG-DELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence            67655  45899999999999999998854 367899999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=1e-11  Score=110.41  Aligned_cols=227  Identities=17%  Similarity=0.237  Sum_probs=130.8

Q ss_pred             cccccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCc
Q psy14728         54 EESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANL  127 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L  127 (319)
                      .|..+ +|+.+.+..+ +..++  .|.++ +|+.+.+.. .++.+  ..|.+|++|+.++++.+.+..++.  +. +.+|
T Consensus       131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L  205 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI  205 (401)
T ss_dssp             TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred             hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence            44444 5666666544 44443  24443 577777764 44433  236677777777777776666652  33 4667


Q ss_pred             cEEEccCCcccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCC
Q psy14728        128 EKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCN  201 (319)
Q Consensus       128 ~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~  201 (319)
                      +.+.+..+ ++.+.  .|..+++|+.+.+..+ +..+  ..+.+ .+|+.+.+.. .+..+  .++..+++|+.+.+.++
T Consensus       206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESS
T ss_pred             CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCc
Confidence            77777643 44433  5666777777777653 2211  23333 5677776633 33333  35667777777777666


Q ss_pred             CCC-----CCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCC
Q psy14728        202 RLR-----TIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVS  270 (319)
Q Consensus       202 ~~~-----~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~  270 (319)
                      .+.     .++  .+..+++|+.+.+. +.++.++  .+..|.+|+.+.+..+ ++.+  .++.++ +|+.+++.+|.+.
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            543     222  26667777777776 3455554  2666777777777543 4433  346666 7777777777665


Q ss_pred             CCcccccccCCC-CCcEEEcCCCc
Q psy14728        271 DWNTVNVLENNK-QLQTIYLDRNP  293 (319)
Q Consensus       271 ~~~~~~~~~~~~-~L~~L~l~~n~  293 (319)
                      .... ..+.+++ .+..|++..+.
T Consensus       359 ~l~~-~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          359 QVFE-KVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             BCCC-SSCCCSCTTCCEEEECGGG
T ss_pred             cccc-ccccCCCCCccEEEeCHHH
Confidence            5322 4455553 56677766543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.41  E-value=3.7e-12  Score=101.70  Aligned_cols=119  Identities=29%  Similarity=0.357  Sum_probs=72.7

Q ss_pred             eEEEecCCcccCccccccCCCCCEEEccCCCccCccC---CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCc
Q psy14728         62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN---LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNK  136 (319)
Q Consensus        62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~  136 (319)
                      +.++++++.++.+|. .-.++|++|++++|.++.++.   +..+++|++|++++|.++.++  .+..+++|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            667777777777664 112377777777777765432   667777777777777777652  46667777777777777


Q ss_pred             ccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCC
Q psy14728        137 ISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKI  181 (319)
Q Consensus       137 ~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l  181 (319)
                      ++.++  .+..+++|++|++++|.+...  ..+..+++|++|++++|.+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            76654  255556666666655555422  2344445555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=6.4e-12  Score=98.89  Aligned_cols=120  Identities=29%  Similarity=0.460  Sum_probs=72.2

Q ss_pred             ceEEEecCCcccCccccccCCCCCEEEccCCCccCccC--CCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCCc
Q psy14728         61 IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSNK  136 (319)
Q Consensus        61 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~  136 (319)
                      .+.++++++.++.++. ...++|++|++++|+++.++.  +..+++|++|++++|.+..++.  +..+++|+.|++++|.
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4567777777776652 223677777777777765432  5667777777777777766653  5666777777777776


Q ss_pred             ccccCC--CCCCCCccEEEccCCcCcCccc--cCCCCCccEEEcCCCCC
Q psy14728        137 ISKIEN--VDHLKKLKVLELGDNKIRIIEN--LDGLTNLEELYLGKNKI  181 (319)
Q Consensus       137 ~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~l  181 (319)
                      ++.++.  +..+++|++|++++|.+..++.  +..+++|++|++++|.+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            666542  4555556666665555543321  33445555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=3.9e-12  Score=101.61  Aligned_cols=119  Identities=28%  Similarity=0.425  Sum_probs=76.9

Q ss_pred             eEEEecCCcccCccccccCCCCCEEEccCCCccCcc-CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCccc
Q psy14728         62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE-NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus        62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~  138 (319)
                      +.++++++.++.+|. .-.++|++|++++|.++.++ .+..+++|++|++++|.++.++  .+..+++|++|++++|.++
T Consensus        13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            567777777777664 12357777788777777553 4677777777777777777665  3667777777777777777


Q ss_pred             ccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCC
Q psy14728        139 KIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKI  181 (319)
Q Consensus       139 ~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l  181 (319)
                      .++  .+..+++|++|++++|.+..++  .+..+++|+.|++++|.+
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            654  3556666666666666655333  244555555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.38  E-value=3.6e-11  Score=106.86  Aligned_cols=243  Identities=16%  Similarity=0.193  Sum_probs=169.0

Q ss_pred             ccccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEE
Q psy14728         57 KEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKL  130 (319)
Q Consensus        57 ~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L  130 (319)
                      .+..++.+.+.. .++.++  .|.++ +|+.+.+..+ ++.++  .|.++ +|+.+.+.. .+..++  .+..+++|+.+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            345566665544 233332  35554 6888888765 55443  36664 688998886 566665  58888999999


Q ss_pred             EccCCcccccC--CCCCCCCccEEEccCCcCcCc--cccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCC
Q psy14728        131 YLCSNKISKIE--NVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLR  204 (319)
Q Consensus       131 ~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~  204 (319)
                      ++..|.++.++  .+. +.+|+.+.+..+ +..+  ..+.++++|+.+.+..+ +..+  .++.+ .+|+.+.+. +.++
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            99988888775  344 688999998754 4433  35778889999998764 4444  34555 789999884 4455


Q ss_pred             CCc--CCcCCCCCCeEeccCCcCc-----Ccc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCc
Q psy14728        205 TIE--NLEALTNLTQLYLSENGLT-----TIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWN  273 (319)
Q Consensus       205 ~~~--~~~~~~~L~~L~l~~~~~~-----~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~  273 (319)
                      .++  .+..+++|+.+.+.++.+.     .++  .+..|++|+.+.+.. .+..+  ..+.+|.+|+.+.+..+ ++.. 
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I-  337 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI-  337 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE-
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE-
Confidence            543  3788999999999887765     344  388999999999984 46655  45889999999999665 5543 


Q ss_pred             ccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCC-ceEEEec
Q psy14728        274 TVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCP-WIVQIDA  316 (319)
Q Consensus       274 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~L~~l~~  316 (319)
                      ....|.++ +|+.+++.+|.....+.   ..+..++ .+..|.+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~---~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFE---KVWYGFPDDITVIRV  377 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCC---SSCCCSCTTCCEEEE
T ss_pred             cHHhCCCC-CCCEEEEcCCCCccccc---ccccCCCCCccEEEe
Confidence            23678888 99999999997776544   2344554 5555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=2.7e-11  Score=95.00  Aligned_cols=104  Identities=27%  Similarity=0.372  Sum_probs=78.5

Q ss_pred             CEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCcC
Q psy14728        194 NILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQV  269 (319)
Q Consensus       194 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~  269 (319)
                      +.++++++++..+|. ...++|+.|++++|++++++.  +..+++|+.|++++|+++.++.  +..+++|++|++++|++
T Consensus        15 ~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            567777777776654 223778888888888887643  6778888888888888887643  57788888888888888


Q ss_pred             CCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        270 SDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       270 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      +..+. ..+..+++|+.|++++|++.+.+.
T Consensus        94 ~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           94 KSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            87432 457788888888888888888875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=8.4e-15  Score=117.76  Aligned_cols=106  Identities=33%  Similarity=0.404  Sum_probs=57.9

Q ss_pred             cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCccccCCCCCCCccEEEc
Q psy14728         54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYL  132 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l  132 (319)
                      .+..+++|+.|++++|.+.+++.+..+++|++|++++|.++.++. +..+++|++|++++|.+..++.+..+++|+.|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence            455555666666666665555555555666666666665554433 3334556666666655555554555555555555


Q ss_pred             cCCcccccC---CCCCCCCccEEEccCCcC
Q psy14728        133 CSNKISKIE---NVDHLKKLKVLELGDNKI  159 (319)
Q Consensus       133 ~~~~~~~~~---~~~~~~~L~~L~l~~~~~  159 (319)
                      ++|.++.++   .+..+++|++|++++|.+
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            555555432   244455555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=2.5e-11  Score=94.87  Aligned_cols=105  Identities=25%  Similarity=0.344  Sum_probs=82.2

Q ss_pred             CCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCccc--cccCCCCcEEEcCCCc
Q psy14728        193 LNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISIIQN--IAHLTELQEFWINDNQ  268 (319)
Q Consensus       193 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~n~  268 (319)
                      .+.+++++++++.+|. ...++++.|++++|++++++.  +..+++|++|++++|+++.++.  +..+++|++|++++|+
T Consensus        11 ~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4667777777777664 224788888888888888743  7788888888888888887643  6788899999999998


Q ss_pred             CCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      ++..+ ...+..+++|+.|++++|++.+.+.
T Consensus        90 l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           90 LKSIP-RGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCC-TTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cCEeC-HHHhcCCCCCCEEEeCCCCCCCCch
Confidence            88743 2567888999999999999988875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=4.4e-13  Score=128.16  Aligned_cols=147  Identities=20%  Similarity=0.307  Sum_probs=64.3

Q ss_pred             ccceEEEecCCcccCcc-ccccCCCCCEEEc-----cCCCccCc-cCCCCCCCCcEEEccCCCCcccc-CCCCCCCccEE
Q psy14728         59 VCIERLLLRWNLIKKIE-NIHMLTTLKELEL-----YDNQLTVI-ENLDTLINLEILDLSFNRIREIK-GLDHLANLEKL  130 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~-~~~~~~~L~~L~l-----~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L  130 (319)
                      +.++.|++.++.+...+ .+.....|..+.+     ..+.+..+ +.+..++.|+.|+|++|.+..++ .+..+++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            45667777766666543 1222222333222     22223222 23566677777777777766665 35566667777


Q ss_pred             EccCCcccccC-CCCCCCCccEEEccCCcCcCc-cccCCCCCccEEEcCCCCCcccc-CCCCCCCCCEEECCCCCCCC
Q psy14728        131 YLCSNKISKIE-NVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISRID-NLASLTKLNILSLQCNRLRT  205 (319)
Q Consensus       131 ~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~-~l~~~~~L~~L~l~~~~~~~  205 (319)
                      ++++|.++.+| .+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..++ .+..+++|+.|++++|.+++
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            77777666554 355666666666666666533 24555666666666666655542 35555666666666665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=9.9e-12  Score=118.82  Aligned_cols=107  Identities=24%  Similarity=0.308  Sum_probs=48.0

Q ss_pred             CCCCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCcc-ccccCCCCcEEE
Q psy14728        187 LASLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFW  263 (319)
Q Consensus       187 l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~  263 (319)
                      +..++.|+.|++++|.+..++ .+..+++|+.|++++|.++.+|. +..+++|+.|+|++|.++.++ .+..+++|++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            334444444444444444432 23344444444555444444432 444444555555555444332 244444455555


Q ss_pred             cCCCcCCCCcccccccCCCCCcEEEcCCCcCc
Q psy14728        264 INDNQVSDWNTVNVLENNKQLQTIYLDRNPVA  295 (319)
Q Consensus       264 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  295 (319)
                      +++|.++.+  +..+..+++|+.|++++|++.
T Consensus       300 L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          300 FFDNMVTTL--PWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCSSCCCCC--CSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCCCCcc--ChhhhcCCCccEEeCCCCccC
Confidence            555544432  223444445555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.17  E-value=2.1e-10  Score=89.93  Aligned_cols=98  Identities=28%  Similarity=0.322  Sum_probs=78.1

Q ss_pred             ceEEEecCCcccCccc-cccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCC
Q psy14728         61 IERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN  135 (319)
Q Consensus        61 L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~  135 (319)
                      -+.++++++.+..+|. +  .++|++|++++|+++.+  ..+.++++|++|++++|.+..++.  +..+++|+.|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3678888888888875 3  38889999999988865  347888899999999998888874  577888888888888


Q ss_pred             cccccC--CCCCCCCccEEEccCCcCc
Q psy14728        136 KISKIE--NVDHLKKLKVLELGDNKIR  160 (319)
Q Consensus       136 ~~~~~~--~~~~~~~L~~L~l~~~~~~  160 (319)
                      .++.++  .+..+++|++|++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            888775  3777888888888887765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.15  E-value=3e-10  Score=88.61  Aligned_cols=100  Identities=29%  Similarity=0.336  Sum_probs=78.6

Q ss_pred             cceEEEecCCcccCccccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEEccCC
Q psy14728         60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLYLCSN  135 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~  135 (319)
                      ..+.++++++.++.+|.- -.++|++|++++|+++.+  ..+.++++|++|++++|.+..++.  +..+++|+.|++++|
T Consensus        10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            357888888888888741 247889999999988865  337888899999999998888763  677888888888888


Q ss_pred             cccccC--CCCCCCCccEEEccCCcCc
Q psy14728        136 KISKIE--NVDHLKKLKVLELGDNKIR  160 (319)
Q Consensus       136 ~~~~~~--~~~~~~~L~~L~l~~~~~~  160 (319)
                      .++.++  .+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            888775  3677888888888887664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=5.9e-10  Score=97.21  Aligned_cols=106  Identities=20%  Similarity=0.279  Sum_probs=75.5

Q ss_pred             EEECCCC-CCCCCcCCcCCCCCCeEeccC-CcCcCccc--cCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCc
Q psy14728        195 ILSLQCN-RLRTIENLEALTNLTQLYLSE-NGLTTIEN--LLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQ  268 (319)
Q Consensus       195 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~  268 (319)
                      .++++++ +++.+|.+..+++|++|++++ |.+++++.  +..+++|+.|+|++|.+++++  .+..+++|++|+|++|+
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            4566665 666666666677788888875 77777653  777788888888888877653  46778888888888888


Q ss_pred             CCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728        269 VSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR  302 (319)
Q Consensus       269 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  302 (319)
                      ++..+ ...+..++ |+.|++.+|++.+++...+
T Consensus        92 l~~~~-~~~~~~~~-L~~l~l~~N~~~c~c~l~~  123 (347)
T 2ifg_A           92 LESLS-WKTVQGLS-LQELVLSGNPLHCSCALRW  123 (347)
T ss_dssp             CSCCC-STTTCSCC-CCEEECCSSCCCCCGGGHH
T ss_pred             cceeC-HHHcccCC-ceEEEeeCCCccCCCccHH
Confidence            87643 23444444 8888888888888877544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.11  E-value=2.4e-09  Score=95.10  Aligned_cols=250  Identities=17%  Similarity=0.131  Sum_probs=132.8

Q ss_pred             hhcccccccceEEEecCCcccCcc--ccccCCCCCEEEccCC------------Cc---------c--CccCCCCCCCCc
Q psy14728         52 EDEESKEVCIERLLLRWNLIKKIE--NIHMLTTLKELELYDN------------QL---------T--VIENLDTLINLE  106 (319)
Q Consensus        52 ~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~------------~~---------~--~~~~~~~l~~L~  106 (319)
                      ..+|..|++|+.+++..+ ++.+.  .+..+.+|+.+.+..+            ..         .  ....+.+|++|+
T Consensus        87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~  165 (394)
T 4fs7_A           87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLE  165 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCC
T ss_pred             hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCc
Confidence            357888899999988654 44332  3566666666555322            00         0  012255666777


Q ss_pred             EEEccCCCCcccc--CCCCCCCccEEEccCCccccc--CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCc
Q psy14728        107 ILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS  182 (319)
Q Consensus       107 ~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  182 (319)
                      .+.+..+. ..++  .+..+.+|+.+.+..+ ++.+  ..+..++.|+.+.+..+....-......+.|+.+.+.... .
T Consensus       166 ~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~-~  242 (394)
T 4fs7_A          166 YVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF-T  242 (394)
T ss_dssp             EEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC-C
T ss_pred             EEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCc-e
Confidence            77765442 2232  3555666666666544 2222  1444555555554443322111112223344444443221 1


Q ss_pred             cc--cCCCCCCCCCEEECCCCCCC--------------------CC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCC
Q psy14728        183 RI--DNLASLTKLNILSLQCNRLR--------------------TI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEK  236 (319)
Q Consensus       183 ~~--~~l~~~~~L~~L~l~~~~~~--------------------~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~  236 (319)
                      .+  ..+..+..++.+.+..+...                    .+  ..+..+.+|+.+.+..+ ++.++  .+..|.+
T Consensus       243 ~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~  321 (394)
T 4fs7_A          243 ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS  321 (394)
T ss_dssp             EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred             ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCC
Confidence            11  22334444444444332110                    01  12456677777777543 55454  3677888


Q ss_pred             ccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEE
Q psy14728        237 LETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQI  314 (319)
Q Consensus       237 L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l  314 (319)
                      |+.+++..+ ++.+  .++.+|.+|+.+.+..+ ++.. ....|.+|++|+.+++..+ +... .   ..+..|++|+.+
T Consensus       322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~~-~~~~-~---~~F~~c~~L~~I  393 (394)
T 4fs7_A          322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPKR-LEQY-R---YDFEDTTKFKWI  393 (394)
T ss_dssp             CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEGG-GGGG-G---GGBCTTCEEEEE
T ss_pred             CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECCC-CEEh-h---heecCCCCCcEE
Confidence            888888643 5544  35778888888888766 4443 2256788888888888654 2222 1   246678888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=7.9e-09  Score=91.74  Aligned_cols=274  Identities=13%  Similarity=0.115  Sum_probs=157.8

Q ss_pred             ccccCCccccCCCceEEEEEeeeccc-----cccccccCCCCcchhhhhccCchhhcccccccceEEEecCC--------
Q psy14728          3 VETVPNTDEVDNDNLVTLNVEAVENT-----HGNQMSLDNPDEESEAETTESKAEDEESKEVCIERLLLRWN--------   69 (319)
Q Consensus         3 ~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------   69 (319)
                      |+++.+-+.-+-.+|..+.+......     ..++..|+.+++... .  .......|..|++|+.+.+..+        
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-V--KMIGRCTFSGCYALKSILLPLMLKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-c--eEccchhhcccccchhhcccCceeeeccee
Confidence            34444445555577777777532222     122344555555332 1  1111245666666666554321        


Q ss_pred             ----c---------cc--CccccccCCCCCEEEccCCCcc-CccCCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEE
Q psy14728         70 ----L---------IK--KIENIHMLTTLKELELYDNQLT-VIENLDTLINLEILDLSFNRIREIK--GLDHLANLEKLY  131 (319)
Q Consensus        70 ----~---------~~--~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~  131 (319)
                          .         ..  +-..|..+++|+.+.+..+-.+ ....+.++.+|+.+.+..+ +..++  .+..+..|+.+.
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence                0         00  1123677888999988765322 2234778888888888765 34333  355555565555


Q ss_pred             ccCCcccccC-----------------------CCCCCCCccEEEccCCcCc-CccccCCCCCccEEEcCCCCCccccCC
Q psy14728        132 LCSNKISKIE-----------------------NVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNL  187 (319)
Q Consensus       132 l~~~~~~~~~-----------------------~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~l  187 (319)
                      +..+....-.                       .+..+..++.+.+..+... ....+..+..++.+......+. -..+
T Consensus       215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F  293 (394)
T 4fs7_A          215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTF  293 (394)
T ss_dssp             CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTT
T ss_pred             cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccc
Confidence            5443322112                       3344445555554433222 1123444455555544433221 1346


Q ss_pred             CCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcE
Q psy14728        188 ASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQE  261 (319)
Q Consensus       188 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~  261 (319)
                      ..+.+|+.+.+..+ +..++  .+..+++|+.+++..+ ++.++  .+.+|.+|+.+.+..+ ++.+  .++.+|.+|+.
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            77888988888654 44443  3788999999999743 66665  3889999999999876 6554  46899999999


Q ss_pred             EEcCCCcCCCCcccccccCCCCCcEE
Q psy14728        262 FWINDNQVSDWNTVNVLENNKQLQTI  287 (319)
Q Consensus       262 L~l~~n~~~~~~~~~~~~~~~~L~~L  287 (319)
                      +++..+ +....  ..+.++++|+.+
T Consensus       371 i~lp~~-~~~~~--~~F~~c~~L~~I  393 (394)
T 4fs7_A          371 VELPKR-LEQYR--YDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEGG-GGGGG--GGBCTTCEEEEE
T ss_pred             EEECCC-CEEhh--heecCCCCCcEE
Confidence            999865 33322  457888888765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.05  E-value=1.8e-11  Score=107.74  Aligned_cols=149  Identities=23%  Similarity=0.274  Sum_probs=98.6

Q ss_pred             CCCccEEEccCCcccccC------CCC-CCCCccEEEccCCcCcCc--ccc-CCCCCccEEEcCCCCCccc--cC----C
Q psy14728        124 LANLEKLYLCSNKISKIE------NVD-HLKKLKVLELGDNKIRII--ENL-DGLTNLEELYLGKNKISRI--DN----L  187 (319)
Q Consensus       124 l~~L~~L~l~~~~~~~~~------~~~-~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~l~~~--~~----l  187 (319)
                      .+.|+.|++++|.++...      .+. ..++|++|++++|.+...  ..+ ..+++|++|++++|.+.+.  ..    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467889999998877531      122 346888888888877521  222 2356788888888887653  11    2


Q ss_pred             -CCCCCCCEEECCCCCCCCC------cCCcCCCCCCeEeccCCcCcCc------cccCCCCCccEEEccCCCCCCc----
Q psy14728        188 -ASLTKLNILSLQCNRLRTI------ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKISII----  250 (319)
Q Consensus       188 -~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~----  250 (319)
                       ...++|++|++++|.++..      ..+...++|++|++++|.++..      ..+..+++|++|++++|.++..    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3467788888888877541      1235677788888888877642      2255667788888888877642    


Q ss_pred             --cccccCCCCcEEEcCCCcCCCC
Q psy14728        251 --QNIAHLTELQEFWINDNQVSDW  272 (319)
Q Consensus       251 --~~l~~~~~L~~L~l~~n~~~~~  272 (319)
                        ..+..+++|++|++++|.+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence              2344567788888888887763

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=7.3e-08  Score=85.46  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             CCCCCCCCEEECCCCCCC-CCcCCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcE
Q psy14728        187 LASLTKLNILSLQCNRLR-TIENLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQE  261 (319)
Q Consensus       187 l~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~  261 (319)
                      +..+..|+.+.+...... +-..+..+++|+.+.+. +.++.++.  +..|.+|+++.+..+ ++.+  .++.+|.+|+.
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            444455555555432211 01124556666666664 33444432  666677777777643 4433  34667777777


Q ss_pred             EEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728        262 FWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA  316 (319)
Q Consensus       262 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~  316 (319)
                      +.+..+ ++..+ ...|.+|++|+.+++.++...      ...+..|..|+.+.+
T Consensus       339 i~ip~s-v~~I~-~~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          339 IAIPSS-VTKIP-ESAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPV  385 (394)
T ss_dssp             EEECTT-CCBCC-GGGGTTCTTCCEEEESSCHHH------HHTCBCCCCC-----
T ss_pred             EEECcc-cCEEh-HhHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEe
Confidence            777543 44322 255677777777777765321      123345666665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.00  E-value=4.7e-11  Score=105.13  Aligned_cols=154  Identities=22%  Similarity=0.272  Sum_probs=115.1

Q ss_pred             CCCccEEEccCCcCcCc--cc----cC-CCCCccEEEcCCCCCccc--cC-CCCCCCCCEEECCCCCCCCC--cC----C
Q psy14728        146 LKKLKVLELGDNKIRII--EN----LD-GLTNLEELYLGKNKISRI--DN-LASLTKLNILSLQCNRLRTI--EN----L  209 (319)
Q Consensus       146 ~~~L~~L~l~~~~~~~~--~~----l~-~~~~L~~L~l~~~~l~~~--~~-l~~~~~L~~L~l~~~~~~~~--~~----~  209 (319)
                      ++.|++|++++|.+...  ..    +. ..++|++|++++|.+.+.  .. ...+++|++|++++|.++..  ..    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46789999999988632  11    22 337999999999998653  22 23456799999999998653  11    2


Q ss_pred             -cCCCCCCeEeccCCcCcCc-----c-ccCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCcc--
Q psy14728        210 -EALTNLTQLYLSENGLTTI-----E-NLLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNT--  274 (319)
Q Consensus       210 -~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~--  274 (319)
                       ...++|++|++++|.++..     + .+..+++|++|++++|.++..      ..+..+++|++|++++|.+++...  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3568899999999998752     2 256788999999999998742      346778899999999999987432  


Q ss_pred             -cccccCCCCCcEEEcCCCcCcCChh
Q psy14728        275 -VNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       275 -~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                       ...+..+++|+.|++++|+++..+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHH
Confidence             2334567999999999999886544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=2.7e-07  Score=81.82  Aligned_cols=254  Identities=13%  Similarity=0.182  Sum_probs=142.4

Q ss_pred             hcccccc-cceEEEecCCcccCcc--ccccCCCCCEEEccCCC---ccCc--cCCCCCCCCcEEEccCCCCcccc--CCC
Q psy14728         53 DEESKEV-CIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQ---LTVI--ENLDTLINLEILDLSFNRIREIK--GLD  122 (319)
Q Consensus        53 ~~~~~~~-~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~---~~~~--~~~~~l~~L~~L~l~~~~~~~l~--~~~  122 (319)
                      .+|..+. .|+.+.+... ++.+.  .|.++.+|+.+.+..+.   ++.+  ..|..+.+|+.+.+..+ ++.++  .+.
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~  134 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH  134 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence            4566664 4777777643 44442  46777777777776553   3333  23666677776666544 33333  356


Q ss_pred             CCCCccEEEccCCccccc--CCCCCCCCccEEEccCCcCcCc-cccCCCCCccEEEcCCCCCcc-ccCCCCCCCCCEEEC
Q psy14728        123 HLANLEKLYLCSNKISKI--ENVDHLKKLKVLELGDNKIRII-ENLDGLTNLEELYLGKNKISR-IDNLASLTKLNILSL  198 (319)
Q Consensus       123 ~l~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~-~~~l~~~~~L~~L~l  198 (319)
                      .+.+|+.+.+..+. ..+  ..+..+.+|+.+.+..+-...- ..+ ....|+.+.+....... ...+..+..++....
T Consensus       135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTTCCEEEE
T ss_pred             hhccccccccccee-eeecccceecccccccccccceeeEeccccc-cccceeEEEECCcccccccchhhhccccceecc
Confidence            66677777665432 222  2455666666666654321111 112 12345555443221100 012222222222211


Q ss_pred             CCC------------------------------------CCCCC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCcc
Q psy14728        199 QCN------------------------------------RLRTI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLE  238 (319)
Q Consensus       199 ~~~------------------------------------~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~  238 (319)
                      ...                                    .+..+  ..+..+.+|+.+.+..... .++  .+..++.|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~  291 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQ  291 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCcccccccccc
Confidence            110                                    01111  1256778888888765433 332  377888999


Q ss_pred             EEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728        239 TLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA  316 (319)
Q Consensus       239 ~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~  316 (319)
                      .+.+.. .+..+  ..+.+|.+|+.+.+..+ ++.. ....|.+|.+|+.+.+..+ ++.++..   .+..|++|+.+++
T Consensus       292 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~  364 (394)
T 4gt6_A          292 DIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS-VTKIPES---AFSNCTALNNIEY  364 (394)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTCCEEEE
T ss_pred             cccCCC-cccccCceeecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCCCEEEE
Confidence            999864 45444  35888999999999764 4432 2256889999999999764 6666553   5789999999887


Q ss_pred             cc
Q psy14728        317 TL  318 (319)
Q Consensus       317 ~~  318 (319)
                      .+
T Consensus       365 ~~  366 (394)
T 4gt6_A          365 SG  366 (394)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=3.4e-09  Score=92.38  Aligned_cols=95  Identities=23%  Similarity=0.364  Sum_probs=41.8

Q ss_pred             EccCC-cCcCccccCCCCCccEEEcCC-CCCcccc--CCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCc
Q psy14728        153 ELGDN-KIRIIENLDGLTNLEELYLGK-NKISRID--NLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLT  226 (319)
Q Consensus       153 ~l~~~-~~~~~~~l~~~~~L~~L~l~~-~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  226 (319)
                      +++++ .+..++.+..+++|+.|++++ |.+..++  .+..+++|+.|++++|+++.++  .+..+++|+.|++++|+++
T Consensus        14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence            44443 443333344444555555543 4444442  2444455555555555444432  1344445555555555444


Q ss_pred             Cccc--cCCCCCccEEEccCCCCC
Q psy14728        227 TIEN--LLSNEKLETLDVAYNKIS  248 (319)
Q Consensus       227 ~~~~--~~~~~~L~~L~l~~~~~~  248 (319)
                      ++|.  +..++ |+.|++.+|.+.
T Consensus        94 ~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           94 SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eeCHHHcccCC-ceEEEeeCCCcc
Confidence            4432  22222 444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.75  E-value=2.4e-08  Score=83.11  Aligned_cols=85  Identities=15%  Similarity=0.343  Sum_probs=69.8

Q ss_pred             CCCCCccEEEccCCCCCCcccc----ccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcC----ChhhHHH
Q psy14728        232 LSNEKLETLDVAYNKISIIQNI----AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQ----DPNYRRK  303 (319)
Q Consensus       232 ~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~  303 (319)
                      ..+++|+.|++++|.++.++.+    ..+++|+.|+|++|++.++.....+..+ +|+.|++++|++..    .+.++..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            4567899999999998876543    4789999999999999987555555555 99999999999985    3467778


Q ss_pred             HHHhCCceEEEecc
Q psy14728        304 IKLVCPWIVQIDAT  317 (319)
Q Consensus       304 ~~~~~~~L~~l~~~  317 (319)
                      ++..+|+|+.||..
T Consensus       246 il~~~P~L~~LDg~  259 (267)
T 3rw6_A          246 IRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHCTTCCEESSC
T ss_pred             HHHHCcccCeECCc
Confidence            89999999999864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.67  E-value=1.3e-08  Score=78.92  Aligned_cols=101  Identities=12%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             CCCCCeEeccCCcCcC--ccccCCCCCccEEEccCCC-CCC--cccccc----CCCCcEEEcCCCc-CCCCcccccccCC
Q psy14728        212 LTNLTQLYLSENGLTT--IENLLSNEKLETLDVAYNK-ISI--IQNIAH----LTELQEFWINDNQ-VSDWNTVNVLENN  281 (319)
Q Consensus       212 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~--~~~l~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~  281 (319)
                      ...|+.|++++|.++.  +..+..+++|++|++++|. ++.  +..+..    +++|++|++++|. +++. ....+..+
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~  138 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF  138 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence            3578999999998874  4568899999999999995 653  444555    3589999999994 8874 44667889


Q ss_pred             CCCcEEEcCCCcCcCChh-hHHHHHHhCCceEE
Q psy14728        282 KQLQTIYLDRNPVAQDPN-YRRKIKLVCPWIVQ  313 (319)
Q Consensus       282 ~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~L~~  313 (319)
                      ++|+.|++++|+-.++.+ ....+....|+++.
T Consensus       139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            999999999998776654 34567788998864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.59  E-value=3.5e-08  Score=86.23  Aligned_cols=150  Identities=17%  Similarity=0.221  Sum_probs=69.8

Q ss_pred             CCCCCCccEEEccCCcccc----------c-CCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCC
Q psy14728        121 LDHLANLEKLYLCSNKISK----------I-ENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNL  187 (319)
Q Consensus       121 ~~~l~~L~~L~l~~~~~~~----------~-~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l  187 (319)
                      +..+++|+.|.+.......          + +.+..+|+|+.|.++++.-..++.+ .+++|++|.+..+.+..-  ..+
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHH
Confidence            4456788888776543211          1 1123456677777765521112222 256666666665554321  112


Q ss_pred             --CCCCCCCEEECCCC--C------CCCCc-CC--cCCCCCCeEeccCCcCcCc-----cccCCCCCccEEEccCCCCCC
Q psy14728        188 --ASLTKLNILSLQCN--R------LRTIE-NL--EALTNLTQLYLSENGLTTI-----ENLLSNEKLETLDVAYNKISI  249 (319)
Q Consensus       188 --~~~~~L~~L~l~~~--~------~~~~~-~~--~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~  249 (319)
                        ..+++|++|+++.+  .      +..+. .+  ..+++|+.|++.+|.+...     .....+++|++|++++|.++.
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence              24566666655321  1      10110 11  2345555555555554421     111234555555555555543


Q ss_pred             c------cccccCCCCcEEEcCCCcCCC
Q psy14728        250 I------QNIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       250 ~------~~l~~~~~L~~L~l~~n~~~~  271 (319)
                      .      ..+..+++|+.|++++|.+++
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            1      122344555555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.57  E-value=1.3e-05  Score=70.41  Aligned_cols=102  Identities=17%  Similarity=0.214  Sum_probs=58.1

Q ss_pred             CCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCc
Q psy14728        187 LASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQ  260 (319)
Q Consensus       187 l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~  260 (319)
                      +..+..|+.+.+..+ ++.+.  .+..+.+|+.+.+..+ ++.++  .+..|.+|+.+.+.++.++.+  ..+.+|.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            445555666555443 32221  2455666666666432 44343  266677777777776666654  3466777777


Q ss_pred             EEEcCCCcCCCCcccccccCCCCCcEEEcCCC
Q psy14728        261 EFWINDNQVSDWNTVNVLENNKQLQTIYLDRN  292 (319)
Q Consensus       261 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  292 (319)
                      .+.+..+ ++.. ....|.+|++|+.+.+..+
T Consensus       314 ~i~lp~~-l~~I-~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          314 SVTLPTA-LKTI-QVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCTT-CCEE-CTTTTTTCTTCCCCCCCTT
T ss_pred             EEEcCcc-ccEE-HHHHhhCCCCCCEEEECCc
Confidence            7777643 3332 1245667777777777543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=6.8e-08  Score=76.26  Aligned_cols=113  Identities=20%  Similarity=0.166  Sum_probs=81.2

Q ss_pred             CCCCCCCCCEEECCCC-CCCCC------cCCcCCCCCCeEeccCCcCcCc------cccCCCCCccEEEccCCCCCC---
Q psy14728        186 NLASLTKLNILSLQCN-RLRTI------ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKISI---  249 (319)
Q Consensus       186 ~l~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~---  249 (319)
                      .+...+.|++|++++| .+..-      ..+...++|++|++++|.+..-      ..+...++|++|++++|.++.   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3566788899999888 77541      2356678888999998888742      225566788889998888874   


Q ss_pred             ---ccccccCCCCcEEEc--CCCcCCCCc---ccccccCCCCCcEEEcCCCcCcCCh
Q psy14728        250 ---IQNIAHLTELQEFWI--NDNQVSDWN---TVNVLENNKQLQTIYLDRNPVAQDP  298 (319)
Q Consensus       250 ---~~~l~~~~~L~~L~l--~~n~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~  298 (319)
                         ...+...++|++|++  ++|.+++..   ....+...+.|+.|++++|.+....
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence               245677788888998  778887643   2244556688888888888876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.54  E-value=9.4e-08  Score=83.51  Aligned_cols=127  Identities=18%  Similarity=0.198  Sum_probs=67.4

Q ss_pred             CCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccccc--CCC--CCCCCccEEEccCC--c------CcCc-ccc-
Q psy14728        100 DTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKI--ENV--DHLKKLKVLELGDN--K------IRII-ENL-  165 (319)
Q Consensus       100 ~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~--~~~--~~~~~L~~L~l~~~--~------~~~~-~~l-  165 (319)
                      ..+++|+.|+++++.-..++.+. +++|+.|.+..+.++.-  ..+  ..+|+|+.|+++.+  .      +..+ +.+ 
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             hcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            34455666666555212223322 55666666655554321  111  24566666665321  1      1001 111 


Q ss_pred             -CCCCCccEEEcCCCCCccc-----cCCCCCCCCCEEECCCCCCCCC-----c-CCcCCCCCCeEeccCCcCcC
Q psy14728        166 -DGLTNLEELYLGKNKISRI-----DNLASLTKLNILSLQCNRLRTI-----E-NLEALTNLTQLYLSENGLTT  227 (319)
Q Consensus       166 -~~~~~L~~L~l~~~~l~~~-----~~l~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~  227 (319)
                       ..+++|+.|++.+|.+.+.     .....+++|++|+++.|.+...     . .+..+++|+.|++++|.++.
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence             2467777777777765531     1123467788888887777541     1 23456788888888887764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.53  E-value=3.5e-08  Score=77.95  Aligned_cols=111  Identities=12%  Similarity=0.159  Sum_probs=55.2

Q ss_pred             CcCCCCCCeEeccCC-cCcCc------cccCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCcc-
Q psy14728        209 LEALTNLTQLYLSEN-GLTTI------ENLLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNT-  274 (319)
Q Consensus       209 ~~~~~~L~~L~l~~~-~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~-  274 (319)
                      +...++|++|++++| .+..-      ..+...++|++|++++|.+..-      ..+...++|++|++++|.+++... 
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344555666666665 55421      1244455566666666655421      223444556666666666554221 


Q ss_pred             --cccccCCCCCcEEEc--CCCcCcCChh-hHHHHHHhCCceEEEecccC
Q psy14728        275 --VNVLENNKQLQTIYL--DRNPVAQDPN-YRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       275 --~~~~~~~~~L~~L~l--~~n~~~~~~~-~~~~~~~~~~~L~~l~~~~C  319 (319)
                        ...+...+.|+.|++  ++|.+..... .....+..++.|+.|++++|
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence              133344555666666  5555554322 11233445556666665543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=1.1e-07  Score=73.73  Aligned_cols=82  Identities=10%  Similarity=0.029  Sum_probs=66.3

Q ss_pred             CCccEEEccCCCCCC--ccccccCCCCcEEEcCCCc-CCCCcccccccCC----CCCcEEEcCCCcCcCChhhHHHHHHh
Q psy14728        235 EKLETLDVAYNKISI--IQNIAHLTELQEFWINDNQ-VSDWNTVNVLENN----KQLQTIYLDRNPVAQDPNYRRKIKLV  307 (319)
Q Consensus       235 ~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~----~~L~~L~l~~n~~~~~~~~~~~~~~~  307 (319)
                      ..|++|++++|.++.  +..+.++++|++|++++|. +++. ....+..+    ++|+.|++++|+-.++.++  ..+..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGI--IALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHhc
Confidence            579999999999864  5678899999999999995 7774 44555553    5899999999985555554  23568


Q ss_pred             CCceEEEecccC
Q psy14728        308 CPWIVQIDATLA  319 (319)
Q Consensus       308 ~~~L~~l~~~~C  319 (319)
                      |++|+.|++++|
T Consensus       138 ~~~L~~L~L~~c  149 (176)
T 3e4g_A          138 FRNLKYLFLSDL  149 (176)
T ss_dssp             CTTCCEEEEESC
T ss_pred             CCCCCEEECCCC
Confidence            999999999998

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.21  E-value=1.1e-06  Score=72.94  Aligned_cols=78  Identities=21%  Similarity=0.386  Sum_probs=52.9

Q ss_pred             CCCCCCeEeccCCcCcCcccc----CCCCCccEEEccCCCCCCccccccCC--CCcEEEcCCCcCCCCc------ccccc
Q psy14728        211 ALTNLTQLYLSENGLTTIENL----LSNEKLETLDVAYNKISIIQNIAHLT--ELQEFWINDNQVSDWN------TVNVL  278 (319)
Q Consensus       211 ~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~------~~~~~  278 (319)
                      .+++|++|++++|++++++.+    ..+++|+.|+|++|.++.+..+..+.  +|++|++++|.+.+..      ....+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            466777777777777765433    36778888888888887765444444  7888888888876411      01345


Q ss_pred             cCCCCCcEEE
Q psy14728        279 ENNKQLQTIY  288 (319)
Q Consensus       279 ~~~~~L~~L~  288 (319)
                      ..+|+|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            6788888765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.20  E-value=0.00042  Score=60.69  Aligned_cols=123  Identities=13%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             CCCCCCCCCEEECCCCCCCCC--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCC
Q psy14728        186 NLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTEL  259 (319)
Q Consensus       186 ~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L  259 (319)
                      .+..+..++.+.+..+ +..+  ..+..+..|+.+.+..+ ++.++  .+..+.+|+.+.+..+ +..+  ..+.+|.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3555667777776543 2222  23667888888888664 55554  3778889999998654 4433  358899999


Q ss_pred             cEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEec
Q psy14728        260 QEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDA  316 (319)
Q Consensus       260 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~  316 (319)
                      +.+.+.++.++..+ ...|.+|.+|+.+.+..+ ++.++.   ..+..|++|+.+.+
T Consensus       289 ~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~---~aF~~C~~L~~i~i  340 (379)
T 4h09_A          289 TKVVMDNSAIETLE-PRVFMDCVKLSSVTLPTA-LKTIQV---YAFKNCKALSTISY  340 (379)
T ss_dssp             CEEEECCTTCCEEC-TTTTTTCTTCCEEECCTT-CCEECT---TTTTTCTTCCCCCC
T ss_pred             ccccccccccceeh-hhhhcCCCCCCEEEcCcc-ccEEHH---HHhhCCCCCCEEEE
Confidence            99999988877643 367899999999999764 555554   35788999988765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.67  E-value=0.00019  Score=52.66  Aligned_cols=64  Identities=17%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             EEEccCCCCC--CccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHH
Q psy14728        239 TLDVAYNKIS--IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKI  304 (319)
Q Consensus       239 ~L~l~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  304 (319)
                      .++.+++.++  .++. .-.++|++|+|++|+++.++. ..|..+++|+.|+|.+|++.+++...+..
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~~l~   77 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRLVPLR   77 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCccHHHH
Confidence            5666666665  5542 123468888888888887543 56777888888888888888888765543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.35  E-value=0.00039  Score=54.73  Aligned_cols=108  Identities=14%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             CCCCCCCCEEECCCC-CCCC--C----cCCcCCCCCCeEeccCCcCcCc-----c-ccCCCCCccEEEccCCCCCCc---
Q psy14728        187 LASLTKLNILSLQCN-RLRT--I----ENLEALTNLTQLYLSENGLTTI-----E-NLLSNEKLETLDVAYNKISII---  250 (319)
Q Consensus       187 l~~~~~L~~L~l~~~-~~~~--~----~~~~~~~~L~~L~l~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~~~~---  250 (319)
                      +..-+.|++|+++++ ++..  .    ..+..-+.|+.|++++|++...     . .+...+.|++|+|++|.++.-   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345567778888774 5543  1    2245567777788877777642     1 244556777777777777631   


Q ss_pred             ---cccccCCCCcEEEcCCC---cCCCC---cccccccCCCCCcEEEcCCCcC
Q psy14728        251 ---QNIAHLTELQEFWINDN---QVSDW---NTVNVLENNKQLQTIYLDRNPV  294 (319)
Q Consensus       251 ---~~l~~~~~L~~L~l~~n---~~~~~---~~~~~~~~~~~L~~L~l~~n~~  294 (319)
                         +.+.....|++|+++++   .+++.   .+.+.+...+.|..|+++.|..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               34555666777777754   33431   1224455567777777776643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.86  E-value=0.00047  Score=54.22  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=27.5

Q ss_pred             cCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCccc---ccccCCCCCcEEEcCCC
Q psy14728        231 LLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNTV---NVLENNKQLQTIYLDRN  292 (319)
Q Consensus       231 ~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n  292 (319)
                      +.....|+.|+|++|.+...      +.+...+.|+.|+|++|.|++....   +.+...+.|+.|++++|
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            33444555555555555421      1233444555555555555442211   22233344555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.27  E-value=0.011  Score=43.11  Aligned_cols=53  Identities=15%  Similarity=0.163  Sum_probs=26.7

Q ss_pred             eEeccCCcCc--CccccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCC
Q psy14728        217 QLYLSENGLT--TIENLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVS  270 (319)
Q Consensus       217 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~  270 (319)
                      .++.++++++  .+|. .-.+++++|+|++|.++.++  .+..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555554  4442 11234555555555555543  2455555666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	319
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-26
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-13
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-13
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-13
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-12
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-11
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-12
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-11
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-12
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-10
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-09
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-07
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-09
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-08
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	6e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	7e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  104 bits (260), Expect = 4e-26
 Identities = 65/200 (32%), Positives = 110/200 (55%)

Query: 68  WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
            N +  I  +  LT L+ L   +NQ++ I  L  L NL+ L L+ N++++I  L  L NL
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 243

Query: 128 EKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL 187
             L L +N+IS +  +  L KL  L+LG N+I  I  L GLT L  L L +N++  I  +
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 188 ASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
           ++L  L  L+L  N +  I  + +LT L +L+ + N ++ + +L +   +  L   +N+I
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363

Query: 248 SIIQNIAHLTELQEFWINDN 267
           S +  +A+LT + +  +ND 
Sbjct: 364 SDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  100 bits (249), Expect = 1e-24
 Identities = 57/164 (34%), Positives = 86/164 (52%)

Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
            ++ L L  N +K I  +  LT L +L+L +NQ++ +  L  L  L  L L  N+I  I 
Sbjct: 220 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279

Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
            L  L  L  L L  N++  I  + +LK L  L L  N I  I  +  LT L+ L+   N
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339

Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSEN 223
           K+S + +LA+LT +N LS   N++  +  L  LT +TQL L++ 
Sbjct: 340 KVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 98.9 bits (245), Expect = 5e-24
 Identities = 64/186 (34%), Positives = 94/186 (50%)

Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
            +E L+   N I  I  + +LT L EL L  NQL  I  L +L NL  LDL+ N+I  + 
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 257

Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKN 179
            L  L  L +L L +N+IS I  +  L  L  LEL +N++  I  +  L NL  L L  N
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 180 KISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLET 239
            IS I  ++SLTKL  L    N++  + +L  LTN+  L    N ++ +  L +  ++  
Sbjct: 318 NISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQ 377

Query: 240 LDVAYN 245
           L +   
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 93.5 bits (231), Expect = 4e-22
 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 68  WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
            N +  ++ +  LTTL+ L++  N+++ I  L  L NLE L  + N+I +I  L  L NL
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221

Query: 128 EKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNL 187
           ++L L  N++  I  +  L  L  L+L +N+I  +  L GLT L EL LG N+IS I  L
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 281

Query: 188 ASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
           A LT L  L L  N+L  I  +  L NLT L L  N ++ I  + S  KL+ L  A NK+
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV 341

Query: 248 SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
           S + ++A+LT +       NQ+SD   +  L N  ++  + L+  
Sbjct: 342 SDVSSLANLTNINWLSAGHNQISD---LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 4e-11
 Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 24/259 (9%)

Query: 63  RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
           + +L    +    +   L  +  L+     +  I+ ++ L NL  ++ S N++ +I  L 
Sbjct: 26  KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 85

Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
           +L  L  + + +N+I+ I  + +L  L  L L +N+I  I+ L  LTNL  L L  N IS
Sbjct: 86  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 145

Query: 183 RID---------------------NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLS 221
            I                       LA+LT L  L +  N++  I  L  LTNL  L  +
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 222 ENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENN 281
            N ++ I  L     L+ L +  N++  I  +A LT L +  + +NQ+S+      L   
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGL 262

Query: 282 KQLQTIYLDRNPVAQDPNY 300
            +L  + L  N ++     
Sbjct: 263 TKLTELKLGANQISNISPL 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 24/85 (28%), Positives = 38/85 (44%)

Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
           D  I  I     L    +  LGK  ++   +   L ++  L      +++I+ +E L NL
Sbjct: 9   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 68

Query: 216 TQLYLSENGLTTIENLLSNEKLETL 240
           TQ+  S N LT I  L +  KL  +
Sbjct: 69  TQINFSNNQLTDITPLKNLTKLVDI 93

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 8e-09
 Identities = 21/87 (24%), Positives = 40/87 (45%)

Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
           I +I     LA   K  L    ++   +   L ++  L+     I+ I+ ++ L NL ++
Sbjct: 12  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 71

Query: 175 YLGKNKISRIDNLASLTKLNILSLQCN 201
               N+++ I  L +LTKL  + +  N
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 17/86 (19%), Positives = 30/86 (34%)

Query: 90  DNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149
           D  +  I     L       L    + +      L  +  L      I  I+ V++L  L
Sbjct: 9   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 68

Query: 150 KVLELGDNKIRIIENLDGLTNLEELY 175
             +   +N++  I  L  LT L ++ 
Sbjct: 69  TQINFSNNQLTDITPLKNLTKLVDIL 94

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.0 bits (162), Expect = 1e-13
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
           I  I     L    ++    + +T       L  +  L      +  I+G+ +L NL  L
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL 68

Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
            L  N+I+ +  + +L K+  LEL  N ++ +  + GL +++ L L   +I+ +  LA L
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
           + L +L L  N++  I  L  LTNL  L +    ++ +  L +  KL TL    NKIS I
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 251 QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYL 289
             +A L  L E  + +NQ+SD   V+ L N   L  + L
Sbjct: 189 SPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 4e-13
 Identities = 55/204 (26%), Positives = 99/204 (48%)

Query: 63  RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
           ++    + +        L  +  L  +   +T IE +  L NL  L+L  N+I ++  L 
Sbjct: 23  KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLK 82

Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
           +L  + +L L  N +  +  +  L+ +K L+L   +I  +  L GL+NL+ LYL  N+I+
Sbjct: 83  NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT 142

Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
            I  LA LT L  LS+   ++  +  L  L+ LT L   +N ++ I  L S   L  + +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202

Query: 243 AYNKISIIQNIAHLTELQEFWIND 266
             N+IS +  +A+ + L    + +
Sbjct: 203 KNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 27/97 (27%), Positives = 49/97 (50%)

Query: 60  CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIK 119
            ++ L L  N I  I  +  LT L+ L + + Q++ +  L  L  L  L    N+I +I 
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 120 GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGD 156
            L  L NL +++L +N+IS +  + +   L ++ L +
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 24/130 (18%), Positives = 50/130 (38%)

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
           I+ I    +L     ++   + +        L  +T L     G+TTIE +     L  L
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGL 68

Query: 241 DVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY 300
           ++  N+I+ +  + +LT++ E  ++ N + + + +  L++ K L         V      
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 301 RRKIKLVCPW 310
                L    
Sbjct: 129 SNLQVLYLDL 138

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 4e-13
 Identities = 57/194 (29%), Positives = 100/194 (51%)

Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
           IK+I +        +  L    +T     + L +++ +  + + I+ ++G+ +L N+ KL
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
           +L  NK++ I+ + +LK L  L L +NK++ + +L  L  L+ L L  N IS I+ L  L
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
            +L  L L  N++  I  L  LT L  L L +N ++ I  L    KL+ L ++ N IS +
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193

Query: 251 QNIAHLTELQEFWI 264
           + +A L  L    +
Sbjct: 194 RALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.7 bits (151), Expect = 3e-12
 Identities = 61/180 (33%), Positives = 100/180 (55%)

Query: 63  RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
           +  L+   +      + L ++ ++   ++ +  ++ +  L N+  L L+ N++ +IK L 
Sbjct: 28  KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLA 87

Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
           +L NL  L+L  NK+  + ++  LKKLK L L  N I  I  L  L  LE LYLG NKI+
Sbjct: 88  NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 147

Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDV 242
            I  L+ LTKL+ LSL+ N++  I  L  LT L  LYLS+N ++ +  L   + L+ L++
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 3e-11
 Identities = 62/161 (38%), Positives = 87/161 (54%)

Query: 61  IERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG 120
           I++++   + IK ++ I  L  + +L L  N+LT I+ L  L NL  L L  N+++++  
Sbjct: 48  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107

Query: 121 LDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK 180
           L  L  L+ L L  N IS I  + HL +L+ L LG+NKI  I  L  LT L+ L L  N+
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167

Query: 181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLS 221
           IS I  LA LTKL  L L  N +  +  L  L NL  L L 
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 96  IENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG 155
           I + D        +L    + +    + L +++++   ++ I  ++ + +L  +  L L 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 76

Query: 156 DNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNL 215
            NK+  I+ L  L NL  L+L +NK+  + +L  L KL  LSL+ N +  I  L  L  L
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 216 TQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTV 275
             LYL  N +T I  L    KL+TL +  N+IS I  +A LT+LQ  +++ N +SD   +
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---L 193

Query: 276 NVLENNKQLQTIYL 289
             L   K L  + L
Sbjct: 194 RALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 3e-09
 Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 3/180 (1%)

Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
           I++I   D  A   K  L    ++     + L  +  +   ++ I+ ++ +  L N+ +L
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 73

Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
           +L  NK++ I  LA+L  L  L L  N+++ + +L+ L  L  L L  NG++ I  L+  
Sbjct: 74  FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
            +LE+L +  NKI+ I  ++ LT+L    + DNQ+SD      L    +LQ +YL +N +
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI 190

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 27/67 (40%), Positives = 35/67 (52%)

Query: 68  WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
            N I  I  +  LT L  L L DNQ++ I  L  L  L+ L LS N I +++ L  L NL
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNL 202

Query: 128 EKLYLCS 134
           + L L S
Sbjct: 203 DVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.7 bits (144), Expect = 6e-12
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 195 ILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN-EKLETLDVAYNKISIIQNI 253
           +L L    L  + +LE L  +T L LS N L  +   L+    LE L  + N +  +  +
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQ 313
           A+L  LQE  + +N++     +  L +  +L  + L  N + Q+   + ++  + P +  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 314 I 314
           I
Sbjct: 122 I 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 84  KELELYDNQLTVIENLDTLINLEILDLSFNRIREIK-GLDHLANLEKLYLCSNKISKIEN 142
           + L L    LTV+ +L+ L+ +  LDLS NR+R +   L  L  LE L    N +  ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 143 VDHLKKLKVLELGDNKIR---IIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQ 199
           V +L +L+ L L +N+++    I+ L     L  L L  N + + + +       + S+ 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (129), Expect = 8e-10
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKIS-RIDNLASLTKLNILSLQCNRLRTIEN 208
           +VL L    + ++ +L+ L  +  L L  N++      LA+L  L +L    N L  ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 209 LEALTNLTQLYLSENGLTTI---ENLLSNEKLETLDVAYNKISIIQNI 253
           +  L  L +L L  N L      + L+S  +L  L++  N +   + I
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 130 LYLCSNKISKIENVDHLKKLKVLELGDNKIR-IIENLDGLTNLEELYLGKNKISRIDNLA 188
           L+L    ++ + +++ L  +  L+L  N++R +   L  L  LE L    N +  +D +A
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 189 SLTKLNILSLQCNRLRTI---ENLEALTNLTQLYLSENGLTTIENLLSN 234
           +L +L  L L  NRL+     + L +   L  L L  N L   E +   
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 26/106 (24%)

Query: 64  LLLRWNLIKKIENIHMLTTLKELELYDNQLTV-IENLDTLINL----------------- 105
           L L    +  + ++  L  +  L+L  N+L      L  L  L                 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 106 -----EILDLSFNRIREIKGLDHLA---NLEKLYLCSNKISKIENV 143
                + L L  NR+++   +  L     L  L L  N + + E +
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 7e-12
 Identities = 63/191 (32%), Positives = 98/191 (51%)

Query: 71  IKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKL 130
           I +I     L    +  L    +T   +   L  +  L      I+ I G+++L NL ++
Sbjct: 8   INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 67

Query: 131 YLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASL 190
              +N+++ I  + +L KL  + + +N+I  I  L  LTNL  L L  N+I+ ID L +L
Sbjct: 68  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127

Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII 250
           T LN L L  N +  I  L  LT+L QL  S N +T ++ L +   LE LD++ NK+S I
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI 187

Query: 251 QNIAHLTELQE 261
             +A LT L+ 
Sbjct: 188 SVLAKLTNLES 198

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 52/178 (29%), Positives = 89/178 (50%)

Query: 63  RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLD 122
           + +L    +    +   L  +  L+     +  I+ ++ L NL  ++ S N++ +I  L 
Sbjct: 22  KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 81

Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
           +L  L  + + +N+I+ I  + +L  L  L L +N+I  I+ L  LTNL  L L  N IS
Sbjct: 82  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 141

Query: 183 RIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETL 240
            I  L+ LT L  L+   N++  ++ L  LT L +L +S N ++ I  L     LE+L
Sbjct: 142 DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 3e-09
 Identities = 55/195 (28%), Positives = 96/195 (49%)

Query: 90  DNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKL 149
           D  +  I     L       L    + +      L  +  L      I  I+ V++L  L
Sbjct: 5   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 64

Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENL 209
             +   +N++  I  L  LT L ++ +  N+I+ I  LA+LT L  L+L  N++  I+ L
Sbjct: 65  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 210 EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQV 269
           + LTNL +L LS N ++ I  L     L+ L+ + N+++ ++ +A+LT L+   I+ N+V
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV 184

Query: 270 SDWNTVNVLENNKQL 284
           SD + +  L N + L
Sbjct: 185 SDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 3/180 (1%)

Query: 115 IREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEEL 174
           I +I     LA   K  L    ++   +   L ++  L+     I+ I+ ++ L NL ++
Sbjct: 8   INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQI 67

Query: 175 YLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSN 234
               N+++ I  L +LTKL  + +  N++  I  L  LTNLT L L  N +T I+ L + 
Sbjct: 68  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127

Query: 235 EKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPV 294
             L  L+++ N IS I  ++ LT LQ+   + NQV+D   +  L N   L+ + +  N V
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD---LKPLANLTTLERLDISSNKV 184

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 24/132 (18%), Positives = 52/132 (39%)

Query: 179 NKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLE 238
             I++I    +L +     L    +    +   L  +T L     G+ +I+ +     L 
Sbjct: 6   TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLT 65

Query: 239 TLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP 298
            ++ + N+++ I  + +LT+L +  +N+NQ++D   +  L N   L         +    
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 299 NYRRKIKLVCPW 310
           N     +L    
Sbjct: 126 NLTNLNRLELSS 137

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 81  TTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
                L+L +N++T I++     L NL  L L  N+I +I       L  LE+LYL  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 137 ISKIENVDHLKKLKVLELGDNKIRII--ENLDGLTNLEELYLGKNKISRI----DNLASL 190
           + ++      K L+ L + +N+I  +     +GL  +  + LG N +            +
Sbjct: 91  LKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 191 TKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKIS 248
            KL+ + +    + TI       +LT+L+L  N +T +   +L     L  L +++N IS
Sbjct: 150 KKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 249 IIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
            + N +         ++ N          L ++K +Q +YL  N 
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 67/257 (26%)

Query: 61  IERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLSFNRIR 116
              L L+ N I +I++     L  L  L L +N+++ I       L+ LE L LS N+++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 117 EI-----------------------KGLDHLANLEKLYLCSNKISKIENVD----HLKKL 149
           E+                          + L  +  + L +N +      +     +KKL
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISR-----IDNLASLTKLN---------- 194
             + + D  I  I       +L EL+L  NKI++     +  L +L KL           
Sbjct: 153 SYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 195 ------------ILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN--------LLSN 234
                       +       ++    L     +  +YL  N ++ I +            
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 235 EKLETLDVAYNKISIIQ 251
                + +  N +   +
Sbjct: 272 ASYSGVSLFSNPVQYWE 288

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 3/143 (2%)

Query: 176 LGKNKISRIDNLASLTKLNILSLQCNRLRTIENL-EALTNLTQLYLSENGLTTIENLLSN 234
           L    I +     +  +   L L+  ++  IENL   L     +  S+N +  ++     
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 235 EKLET--LDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRN 292
            +L+T  ++              L +L E  + +N + +   ++ L + K L  + + RN
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 293 PVAQDPNYRRKIKLVCPWIVQID 315
           PV    +YR  +    P +  +D
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 66  LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD-TLINLEILDLSFNRIREIKGLDHL 124
           L   LI++          +EL+L   ++ VIENL  TL   + +D S N IR++ G   L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 125 ANLEKLYLC 133
             L+ L + 
Sbjct: 63  RRLKTLLVN 71

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 132 LCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDG-LTNLEELYLGKNKISRIDNLASL 190
           L +  I +     +  + + L+L   KI +IENL   L   + +    N+I ++D    L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 191 TKLNILSLQCN 201
            +L  L +  N
Sbjct: 63  RRLKTLLVNNN 73

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 68  WNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANL 127
            +  +      +  +L+EL + +N+L  +  L     LE L  SFN + E+  L    NL
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNL 326

Query: 128 EKLYLCSNKISKIENV-DHLKKLKV 151
           ++L++  N + +  ++ + ++ L++
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 123 HLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKIS 182
              +LE+L + +NK+ ++       +L+ L    N +  +  L    NL++L++  N + 
Sbjct: 282 LPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLR 337

Query: 183 RIDNL-ASLTKLNI 195
              ++  S+  L +
Sbjct: 338 EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 190 LTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISI 249
              L  L++  N+L  +  L     L +L  S N L  +  L  N  L+ L V YN +  
Sbjct: 283 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQN--LKQLHVEYNPLRE 338

Query: 250 IQNI-AHLTELQ 260
             +I   + +L+
Sbjct: 339 FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLR 204
               L+ L + +NK+  +        LE L    N ++ +  L     L  L ++ N LR
Sbjct: 282 LPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLR 337

Query: 205 TIENLEALTNLTQLYLS 221
              ++    ++  L ++
Sbjct: 338 EFPDI--PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 83  LKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN 142
             ELEL +  L+ +   +   +LE L  S N + E+   +   +L+ L + +N +  + +
Sbjct: 40  AHELELNNLGLSSLP--ELPPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKALSD 95

Query: 143 VDHL 146
           +  L
Sbjct: 96  LPPL 99

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 56  SKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLD----TLINLEILDLS 111
           +K   I+  +  +   K +      T  +++EL+   +  IE +D    TL   + L LS
Sbjct: 2   AKATTIKDAIRIFEERKSVV----ATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALS 56

Query: 112 FNRIREIKGLDHLANLEKLYLC 133
            N I +I  L  + NL  L L 
Sbjct: 57  TNNIEKISSLSGMENLRILSLG 78

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 33/195 (16%)

Query: 133 CSNKISKIENVDHLKKLKVLELG-DNKIRIIENLD----GLTNLEELYLGKNKISRIDNL 187
             + I   E    +   +  ++     I  IE +D     L   + L L  N I +I +L
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66

Query: 188 ASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKI 247
           + +  L ILSL  N ++ IENL+A+ +  +                        ++YN+I
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEEL---------------------WISYNQI 105

Query: 248 SIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDP-------NY 300
           + +  I  L  L+  ++++N++++W  ++ L    +L+ + L  NP+  D         Y
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

Query: 301 RRKIKLVCPWIVQID 315
           R ++    P + ++D
Sbjct: 166 RIEVVKRLPNLKKLD 180

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 80  LTTLKELELYDNQLTVIENLDTLINLEILDLSFN--RIREI-KGLDHLANLEKLYLCSNK 136
            TT+K+      +             E ++L      I ++   L  L   + L L +N 
Sbjct: 4   ATTIKDAIRIFEER----KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN 59

Query: 137 ISKIENVDHLKKLKVL 152
           I KI ++  ++ L++L
Sbjct: 60  IEKISSLSGMENLRIL 75

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 39/222 (17%)

Query: 80  LTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNK 136
           + +  E+      LT +  +L    +  IL LS N +       L     L +L L   +
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 137 ISKIENVDHLKKLKVLELGDNKIR-------------------------IIENLDGLTNL 171
           ++K++    L  L  L+L  N+++                          +  L GL  L
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 172 EELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTI--ENLEALTNLTQLYLSENGLTT 227
           +ELYL  N++  +    L    KL  LSL  N L  +    L  L NL  L L EN L T
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 228 I-ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQ 268
           I +    +  L    +  N       I +       W+ DN 
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR----WLQDNA 224

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 9e-05
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 87  ELYDNQLTVIEN-LDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENV-D 144
           EL   Q+  ++  +    +     L    +R    L        L   S+  + +  + +
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 145 HLKKLKVLELGDNKIRIIENLD----GLTNLEELYLGKNKISRIDNLASLTKLNILSLQC 200
           ++ +L  L L +N++  ++++        NL+ L L  N++     L  +  L +  L  
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 201 NR 202
           + 
Sbjct: 123 DG 124

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 8/125 (6%)

Query: 132 LCSNKISKIENV-DHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLAS- 189
           L   ++ +++ +           L    +R   +L        L    +  + +  +   
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63

Query: 190 LTKLNILSLQCNRLRTIENL----EALTNLTQLYLSENGLTTIENLLSNEKL--ETLDVA 243
           + +L  L+L  NRL  ++++    +   NL  L LS N L +   L   + L  E L + 
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123

Query: 244 YNKIS 248
            N +S
Sbjct: 124 GNSLS 128

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 161 IIENLDGLTNLEELYLGKNKISRIDN--LASLTKLNILSLQCNRLRTIENLE 210
             +   G +    L + + +I  + +  L +L KL   S     L+ +  LE
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 21/107 (19%)

Query: 103 INLEILDLSFNRIRE---IKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKI 159
           ++++ LD+    + +    + L  L   + + L    ++                     
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------------EARCK 45

Query: 160 RIIENLDGLTNLEELYLGKNKIS--RIDNLASLTKLNILSLQCNRLR 204
            I   L     L EL L  N++    +  +    +     +Q   L+
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 193 LNILSLQCNRL---RTIENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVA 243
           +  L +QC  L   R  E L  L     + L + GLT          L  N  L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 244 YNKIS 248
            N++ 
Sbjct: 64  SNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 7e-04
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 19/101 (18%)

Query: 76  NIHMLTTLKELELYDNQLT------VIENLDTLINLEILDLSFNRIREIKGLDHLA---- 125
                + L+ L L D  ++      +   L    +L  LDLS N + +  G+  L     
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD-AGILQLVESVR 422

Query: 126 ----NLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRII 162
                LE+L L     S+    +   +L+ LE     +R+I
Sbjct: 423 QPGCLLEQLVLYDIYWSE----EMEDRLQALEKDKPSLRVI 459

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 19/220 (8%)

Query: 90  DNQLTVI-ENLDTLINLEILDLSFNRIREI--KGLDHLANLEKLYLCSNKISKIENVDHL 146
              L  +   +      + + L  NRI  +         NL  L+L SN +++I+     
Sbjct: 20  QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 147 KKLKVLELGDNKIRIIENL-----DGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQ 199
               + +L  +    + ++      GL  L  L+L +  +  +       L  L  L LQ
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 200 CNRLRTIEN--LEALTNLTQLYLSENGLTTI--ENLLSNEKLETLDVAYNKISIIQ--NI 253
            N L+ + +     L NLT L+L  N ++++          L+ L +  N+++ +     
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 254 AHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNP 293
             L  L   ++  N +S   T  +    + LQ + L+ NP
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLNDNP 236

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 68  WNLIKKIENIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIR-EIKGLDHL 124
            +L   +  + +   L  L+L +N++     + L  L  L  L++SFN +  EI    +L
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 125 ANLEKLYLCSNK 136
              +     +NK
Sbjct: 291 QRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 154 LGDNKI--RIIENLDGLTNLEELYLGKNKIS-RIDNLASLTKLNILSLQCNRL 203
           L +N+I   + + L  L  L  L +  N +   I    +L + ++ +   N+ 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	319
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.2e-28  Score=216.89  Aligned_cols=257  Identities=32%  Similarity=0.392  Sum_probs=179.2

Q ss_pred             cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC-------------
Q psy14728         54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG-------------  120 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-------------  120 (319)
                      .++.+++|++|++++|.+++++.++++++|++|++++|++..++.++++++|+.|+++++.+..++.             
T Consensus        61 gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~  140 (384)
T d2omza2          61 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  140 (384)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             ccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455666666777666666666666666667777766666665556666666666666554432110             


Q ss_pred             ----------------------------------------------------CCCCCCccEEEccCCcccccCCCCCCCC
Q psy14728        121 ----------------------------------------------------LDHLANLEKLYLCSNKISKIENVDHLKK  148 (319)
Q Consensus       121 ----------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~  148 (319)
                                                                          ...+++++.++++++.++.++....+++
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~  220 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN  220 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCC
Confidence                                                                1122445555555555554444445566


Q ss_pred             ccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCc
Q psy14728        149 LKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTI  228 (319)
Q Consensus       149 L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  228 (319)
                      |++|+++++.+..++.+..+++|+.+++.+|.+.+++.+..+++|++++++++++..++.+..++.++.+.+..|.++++
T Consensus       221 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~  300 (384)
T d2omza2         221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI  300 (384)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC
T ss_pred             CCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccc
Confidence            66666666666655556666677777777766666655666677777777777766666666667777777777777777


Q ss_pred             cccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhC
Q psy14728        229 ENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVC  308 (319)
Q Consensus       229 ~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  308 (319)
                      +.+..+++++.|++++|++++++.+..+++|++|++++|++++.   ..+..+++|+.|++++|+++..++     +..+
T Consensus       301 ~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l---~~l~~l~~L~~L~l~~N~l~~l~~-----l~~l  372 (384)
T d2omza2         301 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDLTP-----LANL  372 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCBCGG-----GTTC
T ss_pred             cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCC---hhHcCCCCCCEEECCCCcCCCChh-----hccC
Confidence            66777888999999999998887788999999999999998874   347789999999999999998876     4678


Q ss_pred             CceEEEeccc
Q psy14728        309 PWIVQIDATL  318 (319)
Q Consensus       309 ~~L~~l~~~~  318 (319)
                      ++|+.|++++
T Consensus       373 ~~L~~L~L~~  382 (384)
T d2omza2         373 TRITQLGLND  382 (384)
T ss_dssp             TTCSEEECCC
T ss_pred             CCCCEeeCCC
Confidence            9999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.9e-28  Score=214.44  Aligned_cols=257  Identities=30%  Similarity=0.366  Sum_probs=221.3

Q ss_pred             ccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccC
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS  134 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~  134 (319)
                      .+.+.+|++|+++++.|+.++.+..+++|++|++++|+++.++.++++++|++|++++|.+..++.+..+++|+.|++.+
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~  119 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  119 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccccccccccccccccc
Confidence            34578899999999999999889999999999999999999888999999999999999999988899999999999988


Q ss_pred             CcccccCC-----------------------------------------------------------------CCCCCCc
Q psy14728        135 NKISKIEN-----------------------------------------------------------------VDHLKKL  149 (319)
Q Consensus       135 ~~~~~~~~-----------------------------------------------------------------~~~~~~L  149 (319)
                      +.++....                                                                 ...++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            76543211                                                                 1234567


Q ss_pred             cEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCcc
Q psy14728        150 KVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIE  229 (319)
Q Consensus       150 ~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  229 (319)
                      +.++++++.+..+.....+++|++|++++|.+.+++.+..+++|+.+++++|.+..++.+..+++|++++++++++++++
T Consensus       200 ~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~  279 (384)
T d2omza2         200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS  279 (384)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred             ceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCC
Confidence            77777777776665566778889999998888888778888899999999998888877888899999999999988888


Q ss_pred             ccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCC
Q psy14728        230 NLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCP  309 (319)
Q Consensus       230 ~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  309 (319)
                      .+..++.++.+.+++|.++.++.+..++++++|++++|++++..   .+..+++|+.|++++|+++..+.     +..++
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~~-----l~~l~  351 (384)
T d2omza2         280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVSS-----LANLT  351 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCGG-----GGGCT
T ss_pred             ccccccccccccccccccccccccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCChh-----HcCCC
Confidence            88888899999999999988888899999999999999998753   37889999999999999998765     56899


Q ss_pred             ceEEEecccC
Q psy14728        310 WIVQIDATLA  319 (319)
Q Consensus       310 ~L~~l~~~~C  319 (319)
                      +|+.|++++|
T Consensus       352 ~L~~L~l~~N  361 (384)
T d2omza2         352 NINWLSAGHN  361 (384)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            9999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=3.8e-25  Score=180.60  Aligned_cols=203  Identities=31%  Similarity=0.420  Sum_probs=109.1

Q ss_pred             EEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCC
Q psy14728         63 RLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIEN  142 (319)
Q Consensus        63 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~  142 (319)
                      .+++..+.+++...+..+.+|++|++.+|.++.++.+..+++|++|++++|.+..++.+..+++|+.+++++|.++.++.
T Consensus        23 ~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~  102 (227)
T d1h6ua2          23 KIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA  102 (227)
T ss_dssp             HHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG
T ss_pred             HHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc
Confidence            34455555665555556666777777777666666666667777777777666666556666666666666666655555


Q ss_pred             CCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccC
Q psy14728        143 VDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSE  222 (319)
Q Consensus       143 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  222 (319)
                      +..+++|+.+.++++.......+...+.++.+.+..+.+.....+..+++|++|++                      ++
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l----------------------~~  160 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI----------------------GN  160 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC----------------------CS
T ss_pred             ccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccc----------------------cc
Confidence            55555555555555554444444444445555444444433333344444444444                      44


Q ss_pred             CcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcC
Q psy14728        223 NGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD  290 (319)
Q Consensus       223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  290 (319)
                      |.+...+.+..+++|++|++++|+++.++.+.++++|++|++++|++++.+   .+.++++|+.|+++
T Consensus       161 n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~---~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         161 AQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEE
T ss_pred             cccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCc---ccccCCCCCEEEee
Confidence            444443334444444444554444444444444555555555555544421   24445555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.3e-23  Score=171.28  Aligned_cols=191  Identities=30%  Similarity=0.409  Sum_probs=171.2

Q ss_pred             cccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEcc
Q psy14728         54 EESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLC  133 (319)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~  133 (319)
                      ..+.+.+|+.|++.++.++.++.+..+++|++|++++|.++.+..+..+++|+++++++|.++.++++..+++|+.+.++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             CHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccc
Confidence            45678899999999999999988999999999999999999888899999999999999999999889999999999999


Q ss_pred             CCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCC
Q psy14728        134 SNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALT  213 (319)
Q Consensus       134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  213 (319)
                      ++.......+...+.++.+.++.+.+.....+..+++|++|.+.++.+.+...+.++++|+.|++++|+++.++.++.++
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~  195 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLP  195 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChhhcCCC
Confidence            99988888888899999999999988877778889999999999999888777888888999999888888887788888


Q ss_pred             CCCeEeccCCcCcCccccCCCCCccEEEccC
Q psy14728        214 NLTQLYLSENGLTTIENLLSNEKLETLDVAY  244 (319)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  244 (319)
                      +|++|++++|+++++++++.+++|+.|++++
T Consensus       196 ~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            8888888888888887788888888888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=8.6e-22  Score=167.61  Aligned_cols=236  Identities=25%  Similarity=0.370  Sum_probs=193.1

Q ss_pred             ccceEEEecCCcccCcc--ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccC
Q psy14728         59 VCIERLLLRWNLIKKIE--NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCS  134 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~  134 (319)
                      +++++|++++|.++.++  .|.++++|++|++++|.+..+  ..+..++.|++|++++|.++.++.. ..+.+..|....
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~-~~~~l~~L~~~~  109 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHE  109 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc-hhhhhhhhhccc
Confidence            57999999999999986  488999999999999998865  3488999999999999999988753 346789999999


Q ss_pred             CcccccC--CCCCCCCccEEEccCCcCcC----ccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCC--
Q psy14728        135 NKISKIE--NVDHLKKLKVLELGDNKIRI----IENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTI--  206 (319)
Q Consensus       135 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~--  206 (319)
                      |.+..++  .+.....+..+....+....    ...+..+++|+.+++.++.+..++. ..++++++|++++|.....  
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCCCEECT
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-ccCCccCEEECCCCcCCCCCh
Confidence            9888765  45667778888887765532    2346778899999999998877643 2368899999999988754  


Q ss_pred             cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc-ccccCCCCcEEEcCCCcCCCCccc-----ccc
Q psy14728        207 ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ-NIAHLTELQEFWINDNQVSDWNTV-----NVL  278 (319)
Q Consensus       207 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~-----~~~  278 (319)
                      ..+..++.++.|++++|.+++++  .+..+++|++|++++|.++.++ ++..+++|++|++++|+++..+..     ...
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchh
Confidence            34788899999999999999875  3788899999999999999874 688999999999999999875421     233


Q ss_pred             cCCCCCcEEEcCCCcCcC
Q psy14728        279 ENNKQLQTIYLDRNPVAQ  296 (319)
Q Consensus       279 ~~~~~L~~L~l~~n~~~~  296 (319)
                      ...++|+.|++++|++..
T Consensus       269 ~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             TTSCCCSEEECCSSSSCG
T ss_pred             cccCCCCEEECCCCcCcc
Confidence            466889999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.7e-22  Score=161.12  Aligned_cols=175  Identities=32%  Similarity=0.417  Sum_probs=87.1

Q ss_pred             EecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCC
Q psy14728         65 LLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVD  144 (319)
Q Consensus        65 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~  144 (319)
                      .+..+.+++......++++++|+++++.++.++.+..+++|++|++++|.++.++++..+++|++|++++|.+..++.+.
T Consensus        24 ~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~  103 (199)
T d2omxa2          24 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA  103 (199)
T ss_dssp             HTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGT
T ss_pred             HhCCCCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccccc
Confidence            34444555444444556666666666666655555566666666666666555555555555555555555555544444


Q ss_pred             CCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCc
Q psy14728        145 HLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENG  224 (319)
Q Consensus       145 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  224 (319)
                      .++.|+.++++++.......+..+++|+.+++++|.+..++                      .+..+++++.|++.+|+
T Consensus       104 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS----------------------ALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG----------------------GGTTCTTCSEEECCSSC
T ss_pred             cccccccccccccccccccccchhhhhHHhhhhhhhhcccc----------------------ccccccccccccccccc
Confidence            44455555544444433333344444444444444433333                      33344444444444444


Q ss_pred             CcCccccCCCCCccEEEccCCCCCCccccccCCCCcE
Q psy14728        225 LTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQE  261 (319)
Q Consensus       225 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~  261 (319)
                      +++++.+..+++|++|++++|+++.++.+.++++|++
T Consensus       162 l~~l~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES  198 (199)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             ccCCccccCCCCCCEEECCCCCCCCCccccCCCCCCc
Confidence            4444444444444444444444444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.4e-22  Score=163.11  Aligned_cols=178  Identities=34%  Similarity=0.494  Sum_probs=98.0

Q ss_pred             ecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCC
Q psy14728         66 LRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDH  145 (319)
Q Consensus        66 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~  145 (319)
                      +....+++......+.+|++|++++|.++.+..+..+++|++|++++|.++.++.+..+++|+.|++++|+++.++.+..
T Consensus        31 l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~  110 (210)
T d1h6ta2          31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD  110 (210)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTT
T ss_pred             hCcCccCCccCHHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccccccccccc
Confidence            34444444333334556666666666666555566666666666666666665555556666666666666665555555


Q ss_pred             CCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcC
Q psy14728        146 LKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGL  225 (319)
Q Consensus       146 ~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  225 (319)
                      +++|+.|++.++....++.+..+++++.++++++.+.+...+..+++|+.+++++|+++.++.+..+++|++|++++|.+
T Consensus       111 l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECCCCCC
Confidence            55566666555555444445555555555555555544444444555555555555554444444455555555555555


Q ss_pred             cCccccCCCCCccEEEcc
Q psy14728        226 TTIENLLSNEKLETLDVA  243 (319)
Q Consensus       226 ~~~~~~~~~~~L~~L~l~  243 (319)
                      +.++.+..+++|+.|+++
T Consensus       191 ~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         191 SDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CBCGGGTTCTTCSEEEEE
T ss_pred             CCChhhcCCCCCCEEEcc
Confidence            444444444445554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-21  Score=162.08  Aligned_cols=198  Identities=24%  Similarity=0.312  Sum_probs=126.9

Q ss_pred             cCCCCCEEEccCCCccCccC-CCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCCcccccCCCCCCCCccEEEcc
Q psy14728         79 MLTTLKELELYDNQLTVIEN-LDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELG  155 (319)
Q Consensus        79 ~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  155 (319)
                      ....+..++.+++.++.++. +.  ++|++|+|++|.++.++  .+..+++|++|++++|.++.++.+..+++|++|+++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccc
Confidence            34445555666666665432 32  45666666666666554  355566666666666666555544455555555555


Q ss_pred             CCcCcCccccCCCCCccEEEcCCCCCccc-cCCCCCCCCCEEECCCCCCCCCc--CCcCCCCCCeEeccCCcCcCccc--
Q psy14728        156 DNKIRIIENLDGLTNLEELYLGKNKISRI-DNLASLTKLNILSLQCNRLRTIE--NLEALTNLTQLYLSENGLTTIEN--  230 (319)
Q Consensus       156 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--  230 (319)
                      +|++                      ... ..+..+++|+.|+++++.+..++  .+..+.+++++.+++|.++.++.  
T Consensus        86 ~N~l----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~  143 (266)
T d1p9ag_          86 HNQL----------------------QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (266)
T ss_dssp             SSCC----------------------SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             cccc----------------------cccccccccccccccccccccccceeeccccccccccccccccccccceecccc
Confidence            5444                      333 23444555666666666555432  24566777777777777776653  


Q ss_pred             cCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHH
Q psy14728        231 LLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRR  302 (319)
Q Consensus       231 ~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  302 (319)
                      +..++.++.+++++|+++.++  .+..+++|++|++++|+++.++  +.+..+++|+.|++++||+.+++...+
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp--~~~~~~~~L~~L~L~~Np~~CdC~~~~  215 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCEILY  215 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccCCCcccC--hhHCCCCCCCEEEecCCCCCCCcchHH
Confidence            556678888888888887653  3777888888888888888643  456678889999999999998887654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=2.6e-22  Score=160.09  Aligned_cols=161  Identities=32%  Similarity=0.458  Sum_probs=124.3

Q ss_pred             CCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCC
Q psy14728        124 LANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRL  203 (319)
Q Consensus       124 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~  203 (319)
                      ++++++|+++++.++.++++..+++|++|++++|++..+..+.++++|++|++++|.+..++.+..++.|+.++++++..
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccccccccccccccccc
Confidence            44455555555555554445555555555555555555555666777777777777766666677778888888888877


Q ss_pred             CCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCC
Q psy14728        204 RTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQ  283 (319)
Q Consensus       204 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  283 (319)
                      ..++.+..+++|+.+++++|++..++.+..+++++.|++.+|.++.++.+.++++|++|++++|++++.   +.+.++++
T Consensus       119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i---~~l~~L~~  195 (199)
T d2omxa2         119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTN  195 (199)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTT
T ss_pred             ccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCC---ccccCCCC
Confidence            777778889999999999999999888999999999999999999998899999999999999999875   34678888


Q ss_pred             CcEE
Q psy14728        284 LQTI  287 (319)
Q Consensus       284 L~~L  287 (319)
                      |+.|
T Consensus       196 L~~L  199 (199)
T d2omxa2         196 LESL  199 (199)
T ss_dssp             CSEE
T ss_pred             CCcC
Confidence            8875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=2e-22  Score=162.17  Aligned_cols=165  Identities=35%  Similarity=0.493  Sum_probs=90.5

Q ss_pred             CCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcccccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCC
Q psy14728        101 TLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKISKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNK  180 (319)
Q Consensus       101 ~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~  180 (319)
                      .+.+|++|+++++.++.++++..+++|++|++++|+++.++.+..+++|++|++++|++..++.+..+++|+.+++.++.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccc
Confidence            45566667777666666666666666666666666666655555555555555555555544444455555555555554


Q ss_pred             CccccCCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCc
Q psy14728        181 ISRIDNLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQ  260 (319)
Q Consensus       181 l~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~  260 (319)
                      ...++.                      +..+++++.+++++|.++..+....+++|+.+++++|.++.++.+.++++|+
T Consensus       124 ~~~~~~----------------------l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~  181 (210)
T d1h6ta2         124 ISDING----------------------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  181 (210)
T ss_dssp             CCCCGG----------------------GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             cccccc----------------------ccccccccccccccccccccccccccccccccccccccccccccccCCCCCC
Confidence            444444                      4444445555555554444444444455555555555555544455555555


Q ss_pred             EEEcCCCcCCCCcccccccCCCCCcEEEcC
Q psy14728        261 EFWINDNQVSDWNTVNVLENNKQLQTIYLD  290 (319)
Q Consensus       261 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  290 (319)
                      +|++++|++++.   ..+.++++|+.|+++
T Consensus       182 ~L~Ls~N~i~~l---~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         182 NLYLSKNHISDL---RALAGLKNLDVLELF  208 (210)
T ss_dssp             EEECCSSCCCBC---GGGTTCTTCSEEEEE
T ss_pred             EEECCCCCCCCC---hhhcCCCCCCEEEcc
Confidence            555555555542   234555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=5.3e-21  Score=162.67  Aligned_cols=254  Identities=23%  Similarity=0.342  Sum_probs=205.3

Q ss_pred             cceEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccCC
Q psy14728         60 CIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCSN  135 (319)
Q Consensus        60 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~  135 (319)
                      ..+.++.++..++.+|. .-.+++++|++++|+++.++  .+.++++|++|++++|.+..++  .+..+++|+.|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            56788888888998875 22478999999999998764  4899999999999999999875  4889999999999999


Q ss_pred             cccccCCCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccc----cCCCCCCCCCEEECCCCCCCCCcCC
Q psy14728        136 KISKIENVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRI----DNLASLTKLNILSLQCNRLRTIENL  209 (319)
Q Consensus       136 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~----~~l~~~~~L~~L~l~~~~~~~~~~~  209 (319)
                      +++.++. ...+.++.|....+.+..+.  .+......+.+....+.....    ..+..+++|+.+++++|.+..++. 
T Consensus        90 ~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-  167 (305)
T d1xkua_          90 QLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-  167 (305)
T ss_dssp             CCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-
T ss_pred             ccCcCcc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc-
Confidence            9998864 34568999999998887554  355677888888877764432    357788999999999999988754 


Q ss_pred             cCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCc
Q psy14728        210 EALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQ  285 (319)
Q Consensus       210 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  285 (319)
                      ..++++++|++++|..+..+  .+..++.++.|++++|.+..+  .++.++++|++|++++|+++.++  ..+..+++|+
T Consensus       168 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp--~~l~~l~~L~  245 (305)
T d1xkua_         168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQ  245 (305)
T ss_dssp             SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC--TTTTTCSSCC
T ss_pred             ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc--cccccccCCC
Confidence            34789999999999888653  478889999999999999875  45889999999999999999753  5788999999


Q ss_pred             EEEcCCCcCcCChhhH---HHHHHhCCceEEEeccc
Q psy14728        286 TIYLDRNPVAQDPNYR---RKIKLVCPWIVQIDATL  318 (319)
Q Consensus       286 ~L~l~~n~~~~~~~~~---~~~~~~~~~L~~l~~~~  318 (319)
                      .|++++|+++..+...   .......+.|+.|++++
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCC
Confidence            9999999999875420   01234567888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-20  Score=157.01  Aligned_cols=217  Identities=23%  Similarity=0.319  Sum_probs=135.8

Q ss_pred             EEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcccc--CCCCCCCccEEEccC-Cccc
Q psy14728         64 LLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIK--GLDHLANLEKLYLCS-NKIS  138 (319)
Q Consensus        64 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~-~~~~  138 (319)
                      ++.++..++.+|. .-.+.+++|+|++|+++.++  .+.++++|++|+++++.+..++  .+..++.+..+.... +.++
T Consensus        16 v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            3444555555542 11234566666666665432  2555555666666555555443  233344444444322 2222


Q ss_pred             ccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--CcCCCC
Q psy14728        139 KIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTN  214 (319)
Q Consensus       139 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~  214 (319)
                      .++                    ...+.++++|++|+++.+.+..+  ..+...++|+.+++++|.++.++.  ++.+++
T Consensus        95 ~l~--------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~  154 (284)
T d1ozna_          95 SVD--------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (284)
T ss_dssp             CCC--------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccc--------------------chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc
Confidence            221                    12345566666666666665544  235556667777777777766542  667778


Q ss_pred             CCeEeccCCcCcCccc--cCCCCCccEEEccCCCCCCc--cccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcC
Q psy14728        215 LTQLYLSENGLTTIEN--LLSNEKLETLDVAYNKISII--QNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD  290 (319)
Q Consensus       215 L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  290 (319)
                      |++|++++|+++.++.  +..+++|+.+++++|.++.+  ..+..+++|++|++++|++... ....+..+++|+.|+++
T Consensus       155 L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLN  233 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECC
T ss_pred             hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc-cccccccccccCEEEec
Confidence            8888888888877643  67778888888888888754  4577888888888888888874 33667788888888888


Q ss_pred             CCcCcCChhhHH
Q psy14728        291 RNPVAQDPNYRR  302 (319)
Q Consensus       291 ~n~~~~~~~~~~  302 (319)
                      +|++.+++...+
T Consensus       234 ~N~l~C~C~~~~  245 (284)
T d1ozna_         234 DNPWVCDCRARP  245 (284)
T ss_dssp             SSCEECSGGGHH
T ss_pred             CCCCCCCccchH
Confidence            888888877654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-20  Score=154.32  Aligned_cols=190  Identities=26%  Similarity=0.298  Sum_probs=139.0

Q ss_pred             cccccceEEEecCCcccCccc-cccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCccccCCCCCCCccEEEc
Q psy14728         56 SKEVCIERLLLRWNLIKKIEN-IHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIREIKGLDHLANLEKLYL  132 (319)
Q Consensus        56 ~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l  132 (319)
                      .....+.+.+.+++.++.+|. +.  +++++|+|++|+++.++  .+.++++|++|++++|.++.++.+..+++|+.|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L   84 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccc
Confidence            455667778999999999874 43  68999999999998653  48999999999999999999998889999999999


Q ss_pred             cCCcccccC-CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCcccc--CCCCCCCCCEEECCCCCCCCCc
Q psy14728        133 CSNKISKIE-NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRID--NLASLTKLNILSLQCNRLRTIE  207 (319)
Q Consensus       133 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~--~l~~~~~L~~L~l~~~~~~~~~  207 (319)
                      ++|+++..+ .+..+++|+.|+++++....+.  .+..+.+++.|.+.+|.+..++  .+..+++++.+++++|+++.++
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            999998765 5677888888888887765432  3456667777777777666552  3445566666666666666543


Q ss_pred             C--CcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCC
Q psy14728        208 N--LEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKI  247 (319)
Q Consensus       208 ~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~  247 (319)
                      .  +..+++|++|++++|+++.+|. +..+++|+.|++++|.+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            2  5556666666666666666543 45555666666665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=4.3e-21  Score=163.83  Aligned_cols=235  Identities=19%  Similarity=0.225  Sum_probs=188.2

Q ss_pred             ccceEEEecCCcccC---cc-ccccCCCCCEEEccC-CCcc-C-ccCCCCCCCCcEEEccCCCCcccc--CCCCCCCccE
Q psy14728         59 VCIERLLLRWNLIKK---IE-NIHMLTTLKELELYD-NQLT-V-IENLDTLINLEILDLSFNRIREIK--GLDHLANLEK  129 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~---l~-~~~~~~~L~~L~l~~-~~~~-~-~~~~~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~  129 (319)
                      .+++.|+++++.+.+   +| .++++++|++|++++ |.++ . ++.++++++|++|++++|.+..++  .+..+++|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            369999999998875   44 589999999999986 6776 3 456999999999999999998765  3777899999


Q ss_pred             EEccCCccccc--CCCCCCCCccEEEccCCcCc--CccccCCCCCc-cEEEcCCCCCccc--cCCCCCCCCCEEECCCCC
Q psy14728        130 LYLCSNKISKI--ENVDHLKKLKVLELGDNKIR--IIENLDGLTNL-EELYLGKNKISRI--DNLASLTKLNILSLQCNR  202 (319)
Q Consensus       130 L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L-~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~  202 (319)
                      +++.+|.+...  +.+..++.++.++++++.+.  .+..+..+.++ +.+.+..|.+.+.  ..+..+. ...++++.+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99999987764  36889999999999999875  33456666665 8889999887764  3344443 4568888876


Q ss_pred             CCC-Cc-CCcCCCCCCeEeccCCcCcCc-cccCCCCCccEEEccCCCCC-Cc-cccccCCCCcEEEcCCCcCCCCccccc
Q psy14728        203 LRT-IE-NLEALTNLTQLYLSENGLTTI-ENLLSNEKLETLDVAYNKIS-II-QNIAHLTELQEFWINDNQVSDWNTVNV  277 (319)
Q Consensus       203 ~~~-~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~  277 (319)
                      ... ++ .+..+++++.++++++.+.+. +.+..+++|+.|++++|+++ .+ +++.++++|++|++++|++++ .+ ..
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g-~i-P~  286 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EI-PQ  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-EC-CC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc-cC-CC
Confidence            654 23 367889999999999998864 56888899999999999998 34 569999999999999999986 23 34


Q ss_pred             ccCCCCCcEEEcCCCcCcC
Q psy14728        278 LENNKQLQTIYLDRNPVAQ  296 (319)
Q Consensus       278 ~~~~~~L~~L~l~~n~~~~  296 (319)
                      +..+++|+.+++++|+..+
T Consensus       287 ~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEE
T ss_pred             cccCCCCCHHHhCCCcccc
Confidence            5778899999999998544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=1.9e-18  Score=149.14  Aligned_cols=228  Identities=22%  Similarity=0.294  Sum_probs=148.1

Q ss_pred             ccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCccc
Q psy14728         59 VCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKIS  138 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~  138 (319)
                      .++++|+++++.++.+|+.  .++|++|++++|+++.++.  .+.+|+.|++++|.++.++.+.  +.|++|++++|.++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~  111 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLE  111 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCccccc--chhhhhhhhhhhcccchhhhhc--cccccccccccccc
Confidence            4577888888877777643  4678888888887776653  2457777778777777665442  45778888887777


Q ss_pred             ccCCCCCCCCccEEEccCCcCc--------------------CccccCCCCCccEEEcCCCCCcc---------------
Q psy14728        139 KIENVDHLKKLKVLELGDNKIR--------------------IIENLDGLTNLEELYLGKNKISR---------------  183 (319)
Q Consensus       139 ~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~l~~~~~L~~L~l~~~~l~~---------------  183 (319)
                      .++.+..+++|++|+++++...                    ....+..++.++.+.+..+....               
T Consensus       112 ~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~  191 (353)
T d1jl5a_         112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN  191 (353)
T ss_dssp             SCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred             cccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccc
Confidence            7777777777787777766542                    22234456677777776654322               


Q ss_pred             -----ccCCCCCCCCCEEECCCCCCCCCcCC------------------cCCCCCCeEeccCCcCcCcc-----------
Q psy14728        184 -----IDNLASLTKLNILSLQCNRLRTIENL------------------EALTNLTQLYLSENGLTTIE-----------  229 (319)
Q Consensus       184 -----~~~l~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~-----------  229 (319)
                           .+....++.++.+.++++....++..                  .....+...++..+.+.+++           
T Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~  271 (353)
T d1jl5a_         192 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA  271 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccc
Confidence                 23345667788888887765443210                  01122333333333222111           


Q ss_pred             ------c-cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        230 ------N-LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       230 ------~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                            . ...+++|++|++++|+++.++.  .+++|+.|++++|+++..+  .   .+++|+.|++++|+++..|.
T Consensus       272 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~--~---~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         272 SSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVP--E---LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CSSCCSEECCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--C---CCTTCCEEECCSSCCSSCCC
T ss_pred             ccCccccccccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCcCCccc--c---ccCCCCEEECcCCcCCCCCc
Confidence                  1 1234789999999998887763  4678999999999888743  2   35678999999999988876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=9.3e-21  Score=161.75  Aligned_cols=234  Identities=21%  Similarity=0.226  Sum_probs=185.6

Q ss_pred             cCCCCcchhhhhccCchhhcccccccceEEEecC-Cccc-Ccc-ccccCCCCCEEEccCCCccCc--cCCCCCCCCcEEE
Q psy14728         35 LDNPDEESEAETTESKAEDEESKEVCIERLLLRW-NLIK-KIE-NIHMLTTLKELELYDNQLTVI--ENLDTLINLEILD  109 (319)
Q Consensus        35 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~l~-~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~  109 (319)
                      +..++++.+...+....+..+..+++|++|++++ |.+. .+| .++++++|++|++++|++...  ..+..+..|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            3345555555555444457899999999999987 6777 566 599999999999999999853  3378899999999


Q ss_pred             ccCCCCccc-c-CCCCCCCccEEEccCCcccc-cC-CCCCCCCc-cEEEccCCcCcC--ccccCCCCCccEEEcCCCCCc
Q psy14728        110 LSFNRIREI-K-GLDHLANLEKLYLCSNKISK-IE-NVDHLKKL-KVLELGDNKIRI--IENLDGLTNLEELYLGKNKIS  182 (319)
Q Consensus       110 l~~~~~~~l-~-~~~~l~~L~~L~l~~~~~~~-~~-~~~~~~~L-~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~l~  182 (319)
                      +++|.+... | .+..+++++.+++++|.+.+ ++ .+..+..+ +.+.++.+++..  +..+..+ ....+++..+...
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            999987643 3 58889999999999999875 33 45566654 889999888752  2334444 4456888877755


Q ss_pred             cc--cCCCCCCCCCEEECCCCCCCC-CcCCcCCCCCCeEeccCCcCc-Ccc-ccCCCCCccEEEccCCCCC-CccccccC
Q psy14728        183 RI--DNLASLTKLNILSLQCNRLRT-IENLEALTNLTQLYLSENGLT-TIE-NLLSNEKLETLDVAYNKIS-IIQNIAHL  256 (319)
Q Consensus       183 ~~--~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~-~~~~l~~~  256 (319)
                      ..  ..+..+++++.++++++.+.. ++.+..+++++.|++++|+++ .+| .+..+++|++|++++|+++ .+|.++.+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L  290 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccC
Confidence            43  346678899999999998876 456888999999999999999 466 4899999999999999998 47778889


Q ss_pred             CCCcEEEcCCCcC
Q psy14728        257 TELQEFWINDNQV  269 (319)
Q Consensus       257 ~~L~~L~l~~n~~  269 (319)
                      ++|+.+++++|+.
T Consensus       291 ~~L~~l~l~~N~~  303 (313)
T d1ogqa_         291 QRFDVSAYANNKC  303 (313)
T ss_dssp             GGSCGGGTCSSSE
T ss_pred             CCCCHHHhCCCcc
Confidence            9999999999974

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-18  Score=146.33  Aligned_cols=193  Identities=27%  Similarity=0.355  Sum_probs=124.0

Q ss_pred             ccceEEEecCCcccCccc--cccCCCCCEEEccCCCccCccC--CCCCCCCcEEEcc-CCCCcccc--CCCCCCCccEEE
Q psy14728         59 VCIERLLLRWNLIKKIEN--IHMLTTLKELELYDNQLTVIEN--LDTLINLEILDLS-FNRIREIK--GLDHLANLEKLY  131 (319)
Q Consensus        59 ~~L~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~-~~~~~~l~--~~~~l~~L~~L~  131 (319)
                      +.+++|+|++|.|+.++.  +..+++|++|+++++.+..++.  +..+..++.+... .+.+..++  .+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            468999999999998864  8999999999999999985533  6778889998765 55666664  577889999999


Q ss_pred             ccCCcccccC--CCCCCCCccEEEccCCcCcCcc--ccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc
Q psy14728        132 LCSNKISKIE--NVDHLKKLKVLELGDNKIRIIE--NLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE  207 (319)
Q Consensus       132 l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~  207 (319)
                      +++|.+..++  .+..+++|+.+++.++.+..++  .+..+++|+.|++++|.+..++.                    .
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~--------------------~  171 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--------------------R  171 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--------------------T
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch--------------------h
Confidence            9998877653  4555666667776666665432  24445555555555555444311                    1


Q ss_pred             CCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEcCCCcCCC
Q psy14728        208 NLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWINDNQVSD  271 (319)
Q Consensus       208 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~n~~~~  271 (319)
                      .+..+++|+.+++++|++++++  .+..+++|++|++++|.+..++  .+..+++|++|++++|++..
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            1344455555555555555432  2455555555555555555432  34555556666666655543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.6e-19  Score=135.40  Aligned_cols=134  Identities=23%  Similarity=0.349  Sum_probs=117.9

Q ss_pred             ccCCCCCCCCCEEECCCCCCCCCcCC-cCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCccc--cccCCCCc
Q psy14728        184 IDNLASLTKLNILSLQCNRLRTIENL-EALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISIIQN--IAHLTELQ  260 (319)
Q Consensus       184 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~  260 (319)
                      .+.+.+..++++|++++|+++.++.+ ..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.  +..+++|+
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccc
Confidence            34566777889999999999888764 6788999999999999999889999999999999999987643  56799999


Q ss_pred             EEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecc
Q psy14728        261 EFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDAT  317 (319)
Q Consensus       261 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~  317 (319)
                      .|++++|++.+++....+..+++|+.|++++|+++..+.++..++..+|+|++||.+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            999999999988766778899999999999999999999888889999999999865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=3.7e-16  Score=134.50  Aligned_cols=220  Identities=18%  Similarity=0.320  Sum_probs=155.7

Q ss_pred             cccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccCCCCCCCccEEEccCCcc
Q psy14728         58 EVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKGLDHLANLEKLYLCSNKI  137 (319)
Q Consensus        58 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~  137 (319)
                      .++|++|++++|.++.+|..  +.+|+.|++++|+++.++.+.  +.|++|++++|.+..+|.+..+++|+.|+++++.+
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhc--cccccccccccccccccchhhhccceeeccccccc
Confidence            56899999999999988753  568999999999888766432  46999999999999888888889999999988765


Q ss_pred             ccc--------------------CCCCCCCCccEEEccCCcCc--------------------CccccCCCCCccEEEcC
Q psy14728        138 SKI--------------------ENVDHLKKLKVLELGDNKIR--------------------IIENLDGLTNLEELYLG  177 (319)
Q Consensus       138 ~~~--------------------~~~~~~~~L~~L~l~~~~~~--------------------~~~~l~~~~~L~~L~l~  177 (319)
                      ...                    ..+..++.++.+.+..+...                    .++....++.++.+++.
T Consensus       133 ~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~  212 (353)
T d1jl5a_         133 KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD  212 (353)
T ss_dssp             SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             cccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            532                    12455677888887766432                    22334567889999998


Q ss_pred             CCCCccccC------------------CCCCCCCCEEECCCCCCCCCc-----------------C-CcCCCCCCeEecc
Q psy14728        178 KNKISRIDN------------------LASLTKLNILSLQCNRLRTIE-----------------N-LEALTNLTQLYLS  221 (319)
Q Consensus       178 ~~~l~~~~~------------------l~~~~~L~~L~l~~~~~~~~~-----------------~-~~~~~~L~~L~l~  221 (319)
                      .+.....+.                  ......+....+..+.+..+.                 . ...+++|++|+++
T Consensus       213 ~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  292 (353)
T d1jl5a_         213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS  292 (353)
T ss_dssp             SSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECC
Confidence            876544311                  011223444444333222110                 1 1335789999999


Q ss_pred             CCcCcCccccCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcC
Q psy14728        222 ENGLTTIENLLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLD  290 (319)
Q Consensus       222 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  290 (319)
                      +|+++.+|.  .+++|+.|++++|+++.++.  .+++|++|++++|+++..+  ..   .++|+.|.+.
T Consensus       293 ~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~--~~~~L~~L~L~~N~L~~lp--~~---~~~L~~L~~~  352 (353)
T d1jl5a_         293 NNKLIELPA--LPPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFP--DI---PESVEDLRMN  352 (353)
T ss_dssp             SSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCC--CC---CTTCCEEECC
T ss_pred             CCccCcccc--ccCCCCEEECCCCcCCcccc--ccCCCCEEECcCCcCCCCC--cc---ccccCeeECc
Confidence            999998874  46799999999999998864  3568999999999998754  22   2357777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=4.2e-18  Score=124.35  Aligned_cols=122  Identities=25%  Similarity=0.343  Sum_probs=109.5

Q ss_pred             CEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCccc-cCCCCCccEEEccCCCCCCccccccCCCCcEEEcCCCcCCCC
Q psy14728        194 NILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIEN-LLSNEKLETLDVAYNKISIIQNIAHLTELQEFWINDNQVSDW  272 (319)
Q Consensus       194 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~  272 (319)
                      +.|++++|+++.++.+..+++|++|++++|.++.+|. +..+++|+.|++++|.++.++++..+++|++|++++|+++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            4688999999888888889999999999999999864 888999999999999999998899999999999999999987


Q ss_pred             cccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEe
Q psy14728        273 NTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQID  315 (319)
Q Consensus       273 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~  315 (319)
                      +....+..+++|+.|++++|+++..+.+...+...+|+|+.+.
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~Ll  123 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  123 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceEe
Confidence            7667788999999999999999988887778889999998874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-15  Score=121.60  Aligned_cols=208  Identities=20%  Similarity=0.279  Sum_probs=109.9

Q ss_pred             eEEEecCCcccCccccccCCCCCEEEccCCCccCcc--CCCCCCCCcEEEccCCCCcc-cc--CCCCCCCccEEEccC-C
Q psy14728         62 ERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIE--NLDTLINLEILDLSFNRIRE-IK--GLDHLANLEKLYLCS-N  135 (319)
Q Consensus        62 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~-l~--~~~~l~~L~~L~l~~-~  135 (319)
                      +.++.++..++.+|. .-.+++++|++++|+++.++  .|.++++|++|++++|.+.. ++  .+..+++++++.+.. +
T Consensus        11 ~~i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            566777766776653 11246777777777776543  36777777777777776654 22  355566677766543 3


Q ss_pred             cccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc--CCcC
Q psy14728        136 KISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE--NLEA  211 (319)
Q Consensus       136 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~  211 (319)
                      .+...+  .+..+++|+++++.++.+...+....+..++.+                   ..+....+.+..++  .+..
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l-------------------~~~~~~n~~l~~i~~~~~~~  150 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-------------------LLDIQDNINIHTIERNSFVG  150 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE-------------------EEEEESCTTCCEECTTSSTT
T ss_pred             cccccccccccccccccccccchhhhccccccccccccccc-------------------cccccccccccccccccccc
Confidence            444332  345566666666666555433332222222222                   22222222222221  1222


Q ss_pred             C-CCCCeEeccCCcCcCccc-cCCCCCccEE-EccCCCCCCccc--cccCCCCcEEEcCCCcCCCCcccccccCCCCCcE
Q psy14728        212 L-TNLTQLYLSENGLTTIEN-LLSNEKLETL-DVAYNKISIIQN--IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQT  286 (319)
Q Consensus       212 ~-~~L~~L~l~~~~~~~~~~-~~~~~~L~~L-~l~~~~~~~~~~--l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  286 (319)
                      + ..++.+++++++++.++. .....++.++ .+++|.++.++.  +.++++|++|++++|+++..+. ..+.++++|+.
T Consensus       151 ~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~  229 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRA  229 (242)
T ss_dssp             SBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS-SSCTTCCEEES
T ss_pred             ccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH-HHHcCCccccc
Confidence            2 345556666666665543 3333444444 345556665532  5667777777777777765432 34555555555


Q ss_pred             EEcC
Q psy14728        287 IYLD  290 (319)
Q Consensus       287 L~l~  290 (319)
                      +++.
T Consensus       230 l~~~  233 (242)
T d1xwdc1         230 RSTY  233 (242)
T ss_dssp             SSEE
T ss_pred             CcCC
Confidence            5443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.6e-15  Score=121.07  Aligned_cols=188  Identities=18%  Similarity=0.225  Sum_probs=116.7

Q ss_pred             CccEEEccCCcccccC--CCCCCCCccEEEccCCcCcC---ccccCCCCCccEEEcCC-CCCccc--cCCCCCCCCCEEE
Q psy14728        126 NLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRI---IENLDGLTNLEELYLGK-NKISRI--DNLASLTKLNILS  197 (319)
Q Consensus       126 ~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~-~~l~~~--~~l~~~~~L~~L~  197 (319)
                      ++++|++++|.++.++  .+.++++|++|++++|.+..   ...+.+++.++++.+.. +.+...  ..+..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444432  24444555555554444321   12344556666665543 333333  3456777788888


Q ss_pred             CCCCCCCCCcCCcC---CCCCCeEeccCCcCcCccc--cCCC-CCccEEEccCCCCCCccc-cccCCCCcEE-EcCCCcC
Q psy14728        198 LQCNRLRTIENLEA---LTNLTQLYLSENGLTTIEN--LLSN-EKLETLDVAYNKISIIQN-IAHLTELQEF-WINDNQV  269 (319)
Q Consensus       198 l~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~--~~~~-~~L~~L~l~~~~~~~~~~-l~~~~~L~~L-~l~~n~~  269 (319)
                      ++++++...+....   +..+..+...++.+..++.  +..+ ..++.|++++|+++.++. ....++++.+ .+++|.+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l  189 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL  189 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence            88877766544443   3445555556667776643  4444 478999999999987643 3345565555 5677888


Q ss_pred             CCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceEEEecc
Q psy14728        270 SDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIVQIDAT  317 (319)
Q Consensus       270 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~  317 (319)
                      +.++. ..+.++++|+.|++++|+++..|..   .+..++.|+.++..
T Consensus       190 ~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         190 EELPN-DVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCT-TTTTTSCCCSEEECTTSCCCCCCSS---SCTTCCEEESSSEE
T ss_pred             ccccH-HHhcCCCCCCEEECCCCcCCccCHH---HHcCCcccccCcCC
Confidence            87543 5688999999999999999988763   46778888877764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.3e-15  Score=108.05  Aligned_cols=116  Identities=22%  Similarity=0.291  Sum_probs=93.4

Q ss_pred             cEEEcCCCCCccccCCCCCCCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCCcCcCccccCCCCCccEEEccCCCCCCc
Q psy14728        172 EELYLGKNKISRIDNLASLTKLNILSLQCNRLRTIE-NLEALTNLTQLYLSENGLTTIENLLSNEKLETLDVAYNKISII  250 (319)
Q Consensus       172 ~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  250 (319)
                      |.|++++|.++.++.+..+++|++|++++|+++.+| .+..+++|++|++++|.++.++.+..+++|++|++++|+++.+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCC
Confidence            467888888888877888888888888888888875 4788889999999999999888888889999999999988765


Q ss_pred             c---ccccCCCCcEEEcCCCcCCCCccc--ccccCCCCCcEE
Q psy14728        251 Q---NIAHLTELQEFWINDNQVSDWNTV--NVLENNKQLQTI  287 (319)
Q Consensus       251 ~---~l~~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L  287 (319)
                      +   .+..+++|++|++++|++++.+..  .....+|+++.|
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            3   477889999999999998764322  334567777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-15  Score=116.09  Aligned_cols=106  Identities=26%  Similarity=0.321  Sum_probs=64.7

Q ss_pred             ccccccceEEEecCCcccCcccc-ccCCCCCEEEccCCCccCccCCCCCCCCcEEEccCCCCccccC--CCCCCCccEEE
Q psy14728         55 ESKEVCIERLLLRWNLIKKIENI-HMLTTLKELELYDNQLTVIENLDTLINLEILDLSFNRIREIKG--LDHLANLEKLY  131 (319)
Q Consensus        55 ~~~~~~L~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~  131 (319)
                      +.++.+++.|++++|+|+.++.+ ..+++|++|++++|+++.++.+..+++|++|++++|.++.++.  +..+++|+.|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            45566667777777777666543 4566677777777766666666666667777777766666553  33466666666


Q ss_pred             ccCCcccccC---CCCCCCCccEEEccCCcCc
Q psy14728        132 LCSNKISKIE---NVDHLKKLKVLELGDNKIR  160 (319)
Q Consensus       132 l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~  160 (319)
                      +++|.++.++   .+..+++|++|++++|++.
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eccccccccccccccccccccchhhcCCCccc
Confidence            6666655432   3444555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.57  E-value=3.8e-17  Score=129.31  Aligned_cols=132  Identities=28%  Similarity=0.519  Sum_probs=105.5

Q ss_pred             CCCCCCCCCEEECCCCCCCCCcCCcCCCCCCeEeccCCcCcCcccc-CCCCCccEEEccCCCCCCccccccCCCCcEEEc
Q psy14728        186 NLASLTKLNILSLQCNRLRTIENLEALTNLTQLYLSENGLTTIENL-LSNEKLETLDVAYNKISIIQNIAHLTELQEFWI  264 (319)
Q Consensus       186 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l  264 (319)
                      .+..+++|++|++++|+++.++.+..+++|++|++++|.++.++.+ ..++.|+.|++++|.++.++.+..+++|++|++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4666778888888888888777777888888888888888887653 344678999999999888877888899999999


Q ss_pred             CCCcCCCCcccccccCCCCCcEEEcCCCcCcCC-------hhhHHHHHHhCCceEEEecc
Q psy14728        265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD-------PNYRRKIKLVCPWIVQIDAT  317 (319)
Q Consensus       265 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~~~~L~~l~~~  317 (319)
                      ++|+++++.....+..+++|+.|++++|++...       +.++..++..+|+|+.||..
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            999998865556778899999999999987633       33455667889999999854

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.5e-15  Score=122.14  Aligned_cols=225  Identities=17%  Similarity=0.185  Sum_probs=103.1

Q ss_pred             eEEEecCCcccC-c-cccccCCCCCEEEccCCCccCc-cCCCCCCCCcEEEccCCCCcc--cc-CCCCCCCccEEEccCC
Q psy14728         62 ERLLLRWNLIKK-I-ENIHMLTTLKELELYDNQLTVI-ENLDTLINLEILDLSFNRIRE--IK-GLDHLANLEKLYLCSN  135 (319)
Q Consensus        62 ~~L~l~~~~~~~-l-~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--l~-~~~~l~~L~~L~l~~~  135 (319)
                      +++++++..+.. . ..+.. ..+..+.+....+..+ ........|++|+++++.+..  ++ -+..+++|++|+++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            456666655541 1 11110 2334555544433322 223344567777777665543  22 2455666666666666


Q ss_pred             cccc--cCCCCCCCCccEEEccCCc-CcC--ccc-cCCCCCccEEEcCCCCCccccCCCCCCCCCEEECCCCCCCC--Cc
Q psy14728        136 KISK--IENVDHLKKLKVLELGDNK-IRI--IEN-LDGLTNLEELYLGKNKISRIDNLASLTKLNILSLQCNRLRT--IE  207 (319)
Q Consensus       136 ~~~~--~~~~~~~~~L~~L~l~~~~-~~~--~~~-l~~~~~L~~L~l~~~~l~~~~~l~~~~~L~~L~l~~~~~~~--~~  207 (319)
                      .++.  +..+..+++|++|++++|. ++.  +.. ...+++|++|++++|.                     .++.  +.
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~---------------------~~~~~~~~  140 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF---------------------DFTEKHVQ  140 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT---------------------TCCHHHHH
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc---------------------ccccccch
Confidence            5543  2234455555555555532 210  111 1234445555544432                     1211  10


Q ss_pred             -CC-cCCCCCCeEeccCCc--CcC--ccc-cCCCCCccEEEccCCC-CC--CccccccCCCCcEEEcCCC-cCCCCcccc
Q psy14728        208 -NL-EALTNLTQLYLSENG--LTT--IEN-LLSNEKLETLDVAYNK-IS--IIQNIAHLTELQEFWINDN-QVSDWNTVN  276 (319)
Q Consensus       208 -~~-~~~~~L~~L~l~~~~--~~~--~~~-~~~~~~L~~L~l~~~~-~~--~~~~l~~~~~L~~L~l~~n-~~~~~~~~~  276 (319)
                       .+ ..+++|+.|+++++.  ++.  +.. ...+++|++|++++|. ++  .+..+.++++|++|++++| .+++ ....
T Consensus       141 ~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~-~~l~  219 (284)
T d2astb2         141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-ETLL  219 (284)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-GGGG
T ss_pred             hhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh-HHHH
Confidence             01 123455555555432  221  221 2445566666666543 33  2344556666666666664 3444 2234


Q ss_pred             cccCCCCCcEEEcCCCcCcCChhhHHHHHHhCCceE
Q psy14728        277 VLENNKQLQTIYLDRNPVAQDPNYRRKIKLVCPWIV  312 (319)
Q Consensus       277 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  312 (319)
                      .++.+|+|+.|++++| +.. ... ..+...||+|+
T Consensus       220 ~L~~~~~L~~L~l~~~-~~d-~~l-~~l~~~lp~L~  252 (284)
T d2astb2         220 ELGEIPTLKTLQVFGI-VPD-GTL-QLLKEALPHLQ  252 (284)
T ss_dssp             GGGGCTTCCEEECTTS-SCT-TCH-HHHHHHSTTSE
T ss_pred             HHhcCCCCCEEeeeCC-CCH-HHH-HHHHHhCcccc
Confidence            4555666666666665 222 221 23445566654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=4e-13  Score=105.39  Aligned_cols=125  Identities=24%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             EEEcCCCCCccccC-CCCCCCCCEEECCCCCCCC-C--cCCcCCCCCCeEeccCCcCcCcc--ccCCCCCccEEEccCCC
Q psy14728        173 ELYLGKNKISRIDN-LASLTKLNILSLQCNRLRT-I--ENLEALTNLTQLYLSENGLTTIE--NLLSNEKLETLDVAYNK  246 (319)
Q Consensus       173 ~L~l~~~~l~~~~~-l~~~~~L~~L~l~~~~~~~-~--~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~  246 (319)
                      .++.+++.++.+|. +  .+++++|++++|+++. +  ..+..+++|++|++++|.+..++  .+..+++|++|++++|+
T Consensus        12 ~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            45555555555432 2  1456666666666643 2  12456666666666666666553  25556666666666666


Q ss_pred             CCCcc--ccccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhh
Q psy14728        247 ISIIQ--NIAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNY  300 (319)
Q Consensus       247 ~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  300 (319)
                      ++.++  .+.++++|++|++++|+++..+ ...|..+++|+.|++++|++.+++..
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccccCHHHHhCCCcccccccCCccccccC-HHHhcCCcccccccccccccccccch
Confidence            66542  3666667777777777666632 24566666777777777777666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.8e-15  Score=130.35  Aligned_cols=84  Identities=24%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             CCCCeEeccCCcCcCcc------ccCCCCCccEEEccCCCCCCc------cccc-cCCCCcEEEcCCCcCCCCc---ccc
Q psy14728        213 TNLTQLYLSENGLTTIE------NLLSNEKLETLDVAYNKISII------QNIA-HLTELQEFWINDNQVSDWN---TVN  276 (319)
Q Consensus       213 ~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~------~~l~-~~~~L~~L~l~~n~~~~~~---~~~  276 (319)
                      ..|+.+.++++.++...      ....+++|++|++++|.++..      +.+. ..+.|++|++++|.+++..   ..+
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            45566666666554321      123445666666666666421      1122 3455666666666666521   112


Q ss_pred             cccCCCCCcEEEcCCCcCcC
Q psy14728        277 VLENNKQLQTIYLDRNPVAQ  296 (319)
Q Consensus       277 ~~~~~~~L~~L~l~~n~~~~  296 (319)
                      .+..+++|++|++++|+++.
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCH
T ss_pred             HHhcCCCCCEEECCCCcCCH
Confidence            34455666666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=1.2e-13  Score=108.55  Aligned_cols=131  Identities=19%  Similarity=0.243  Sum_probs=74.7

Q ss_pred             cCCCCCccEEEcCCCCCccc--cCCCCCCCCCEEECCCCCCCCCcC--CcCCCCCCeEeccCCcCcCccc--cCCCCCcc
Q psy14728        165 LDGLTNLEELYLGKNKISRI--DNLASLTKLNILSLQCNRLRTIEN--LEALTNLTQLYLSENGLTTIEN--LLSNEKLE  238 (319)
Q Consensus       165 l~~~~~L~~L~l~~~~l~~~--~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~  238 (319)
                      +.++++|++|++++|.+..+  ..+..+++|++|++++|++..++.  +..+++|++|++++|+++.++.  +..+++|+
T Consensus        50 f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  129 (192)
T d1w8aa_          50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccc
Confidence            34455555555555555444  345555666666666666655432  5666777777777777776643  56667777


Q ss_pred             EEEccCCCCCCccccc-cCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCChh
Q psy14728        239 TLDVAYNKISIIQNIA-HLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPN  299 (319)
Q Consensus       239 ~L~l~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  299 (319)
                      +|++++|.+....... -...++.+.+..+.+... .   ...+..++.++++.+.+.+.++
T Consensus       130 ~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~-~---p~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG-A---PSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             EEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC-S---STTTTTSBGGGSCTTTCCCCCC
T ss_pred             cccccccccccccchHHHhhhhhhhcccCCCeEeC-C---ChhhcCCEeeecCHhhCcCCCC
Confidence            7777777665322111 112344455555555431 1   2345566677888888776544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-14  Score=129.21  Aligned_cols=299  Identities=20%  Similarity=0.190  Sum_probs=178.4

Q ss_pred             ceEEEEEeeeccccc-------cccccCCCCcchhhhhccC--chhhcccccccceEEEecCCcccC--ccc----cc-c
Q psy14728         16 NLVTLNVEAVENTHG-------NQMSLDNPDEESEAETTES--KAEDEESKEVCIERLLLRWNLIKK--IEN----IH-M   79 (319)
Q Consensus        16 ~l~~l~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--l~~----~~-~   79 (319)
                      +++.++++.......       ....++.++++++......  .....+..+++|+.|++++|.+++  +..    +. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            456666666555422       1223555666666543222  223456778888888888888763  211    22 2


Q ss_pred             CCCCCEEEccCCCccCc------cCCCCCCCCcEEEccCCCCcccc---------C------------------------
Q psy14728         80 LTTLKELELYDNQLTVI------ENLDTLINLEILDLSFNRIREIK---------G------------------------  120 (319)
Q Consensus        80 ~~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~l~---------~------------------------  120 (319)
                      ..+|++|++++|.++..      ..+..+++|++|++++|.+....         .                        
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            35788888888887632      23677888888888888754210         0                        


Q ss_pred             --CCCCCCccEEEccCCccccc------------C-----------------------CCCCCCCccEEEccCCc-----
Q psy14728        121 --LDHLANLEKLYLCSNKISKI------------E-----------------------NVDHLKKLKVLELGDNK-----  158 (319)
Q Consensus       121 --~~~l~~L~~L~l~~~~~~~~------------~-----------------------~~~~~~~L~~L~l~~~~-----  158 (319)
                        +.....++.+.++++.....            +                       .+...+.++.+.+..+.     
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence              01123455555544422100            0                       01123344555555443     


Q ss_pred             ------------------------CcCc------cccCCCCCccEEEcCCCCCccc------cC-CCCCCCCCEEECCCC
Q psy14728        159 ------------------------IRII------ENLDGLTNLEELYLGKNKISRI------DN-LASLTKLNILSLQCN  201 (319)
Q Consensus       159 ------------------------~~~~------~~l~~~~~L~~L~l~~~~l~~~------~~-l~~~~~L~~L~l~~~  201 (319)
                                              +...      ..+...+.++.++++++.+.+.      .. ....+.|+.++++++
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                                    3210      1122345555666666554331      01 123457888888888


Q ss_pred             CCCCC--c----CCcCCCCCCeEeccCCcCcC-----cc-cc-CCCCCccEEEccCCCCCCc------cccccCCCCcEE
Q psy14728        202 RLRTI--E----NLEALTNLTQLYLSENGLTT-----IE-NL-LSNEKLETLDVAYNKISII------QNIAHLTELQEF  262 (319)
Q Consensus       202 ~~~~~--~----~~~~~~~L~~L~l~~~~~~~-----~~-~~-~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L  262 (319)
                      .+...  .    .+...++|++|++++|.++.     +. .+ ...+.|++|++++|.++..      ..+..+++|++|
T Consensus       323 ~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             chhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEE
Confidence            77642  1    13456789999999999874     22 23 3567899999999999742      346678999999


Q ss_pred             EcCCCcCCCCccccc---cc-CCCCCcEEEcCCCcCcCCh-hhHHHHHHhCCceEEE
Q psy14728        263 WINDNQVSDWNTVNV---LE-NNKQLQTIYLDRNPVAQDP-NYRRKIKLVCPWIVQI  314 (319)
Q Consensus       263 ~l~~n~~~~~~~~~~---~~-~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~L~~l  314 (319)
                      ++++|.+++......   +. ....|+.|++.++.+.... .....+....|+|++|
T Consensus       403 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            999999987433222   22 3347999999999988542 3334566788999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-13  Score=115.79  Aligned_cols=171  Identities=16%  Similarity=0.177  Sum_probs=115.6

Q ss_pred             CCCccEEEccCCcCcC--c-cccCCCCCccEEEcCCCCCcc--ccCCCCCCCCCEEECCCC-CCCC--CcC-CcCCCCCC
Q psy14728        146 LKKLKVLELGDNKIRI--I-ENLDGLTNLEELYLGKNKISR--IDNLASLTKLNILSLQCN-RLRT--IEN-LEALTNLT  216 (319)
Q Consensus       146 ~~~L~~L~l~~~~~~~--~-~~l~~~~~L~~L~l~~~~l~~--~~~l~~~~~L~~L~l~~~-~~~~--~~~-~~~~~~L~  216 (319)
                      ..+|++|+++++.+..  + ..+..+++|++|++.++.+.+  +..+..+++|++|++++| .++.  +.. ...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3456666666554431  1 124556777777777776544  244566777888888776 3432  222 35689999


Q ss_pred             eEeccCCc-CcC--ccc--cCCCCCccEEEccCCC--CCC--ccc-cccCCCCcEEEcCCCc-CCCCcccccccCCCCCc
Q psy14728        217 QLYLSENG-LTT--IEN--LLSNEKLETLDVAYNK--ISI--IQN-IAHLTELQEFWINDNQ-VSDWNTVNVLENNKQLQ  285 (319)
Q Consensus       217 ~L~l~~~~-~~~--~~~--~~~~~~L~~L~l~~~~--~~~--~~~-l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~  285 (319)
                      +|++++|. ++.  +..  ...++.|+.|+++++.  ++.  +.. ...+++|++|++++|. +++ ..+..+..+++|+
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~  203 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQ  203 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCC
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc-hhhhhhcccCcCC
Confidence            99999974 442  221  2345789999999863  332  333 4578999999999985 555 4557788999999


Q ss_pred             EEEcCCCcCcCChhhHHHHHHhCCceEEEecccC
Q psy14728        286 TIYLDRNPVAQDPNYRRKIKLVCPWIVQIDATLA  319 (319)
Q Consensus       286 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~l~~~~C  319 (319)
                      +|++++|.-..+..+  ..+..+|+|+.|++++|
T Consensus       204 ~L~L~~C~~i~~~~l--~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETL--LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGG--GGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHH--HHHhcCCCCCEEeeeCC
Confidence            999999864444443  23578999999999987

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=6.4e-14  Score=120.32  Aligned_cols=239  Identities=21%  Similarity=0.216  Sum_probs=139.0

Q ss_pred             hcccccccceEEEecCCcccC-----c-cccccCCCCCEEEccCCCccCc------------cCCCCCCCCcEEEccCCC
Q psy14728         53 DEESKEVCIERLLLRWNLIKK-----I-ENIHMLTTLKELELYDNQLTVI------------ENLDTLINLEILDLSFNR  114 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~~~~~------------~~~~~l~~L~~L~l~~~~  114 (319)
                      ..+...+.++.|++++|.+..     + ..+...++|+.++++++.....            +.+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            456667778888888877653     2 2356677788888876644311            123455666677776665


Q ss_pred             Ccccc------CCCCCCCccEEEccCCcccccC--CCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc--
Q psy14728        115 IREIK------GLDHLANLEKLYLCSNKISKIE--NVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI--  184 (319)
Q Consensus       115 ~~~l~------~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--  184 (319)
                      +....      .+...++|++|++++|.+....  .+..  .+..+       .........+.|+.+.++++.+...  
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~-------~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL-------AVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH-------HHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccc--ccccc-------ccccccccCcccceeeccccccccccc
Confidence            54311      1233455666666665543210  0000  00000       0000012345566666666654432  


Q ss_pred             ----cCCCCCCCCCEEECCCCCCCCC-------cCCcCCCCCCeEeccCCcCcC-----c-cccCCCCCccEEEccCCCC
Q psy14728        185 ----DNLASLTKLNILSLQCNRLRTI-------ENLEALTNLTQLYLSENGLTT-----I-ENLLSNEKLETLDVAYNKI  247 (319)
Q Consensus       185 ----~~l~~~~~L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~  247 (319)
                          ..+...+.++++++++|.+...       ..+...++|+.|++++|.++.     + ..+..+++|++|++++|.+
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence                2244556677777777766531       235667788888888887763     2 2367778888999998888


Q ss_pred             CCc------cccc--cCCCCcEEEcCCCcCCCCccc---ccc-cCCCCCcEEEcCCCcCcCChhh
Q psy14728        248 SII------QNIA--HLTELQEFWINDNQVSDWNTV---NVL-ENNKQLQTIYLDRNPVAQDPNY  300 (319)
Q Consensus       248 ~~~------~~l~--~~~~L~~L~l~~n~~~~~~~~---~~~-~~~~~L~~L~l~~n~~~~~~~~  300 (319)
                      +..      ..+.  ..+.|++|++++|+++.....   ..+ ..++.|+.|++++|++..+...
T Consensus       256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~  320 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV  320 (344)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHH
T ss_pred             CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchH
Confidence            642      2232  246799999999988763221   222 2578899999999998876543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=3.1e-13  Score=115.98  Aligned_cols=227  Identities=22%  Similarity=0.278  Sum_probs=145.6

Q ss_pred             ccccCCCCCEEEccCCCccC-----c-cCCCCCCCCcEEEccCCCCcccc------------CCCCCCCccEEEccCCcc
Q psy14728         76 NIHMLTTLKELELYDNQLTV-----I-ENLDTLINLEILDLSFNRIREIK------------GLDHLANLEKLYLCSNKI  137 (319)
Q Consensus        76 ~~~~~~~L~~L~l~~~~~~~-----~-~~~~~l~~L~~L~l~~~~~~~l~------------~~~~l~~L~~L~l~~~~~  137 (319)
                      .+.....|+.|++++|.+..     + ..+...+.|+.++++++......            .+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            35667778888888877642     1 33666777788877766433211            123344455555554443


Q ss_pred             cccCCCCCCCCccEEEccCCcCcCccccCCCCCccEEEcCCCCCccc---------------cCCCCCCCCCEEECCCCC
Q psy14728        138 SKIENVDHLKKLKVLELGDNKIRIIENLDGLTNLEELYLGKNKISRI---------------DNLASLTKLNILSLQCNR  202 (319)
Q Consensus       138 ~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~---------------~~l~~~~~L~~L~l~~~~  202 (319)
                      ..... .               .....+...++|++|++++|.+...               ......+.++.+.++++.
T Consensus       106 ~~~~~-~---------------~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1         106 GPTAQ-E---------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             CTTTH-H---------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             ccccc-c---------------chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            32100 0               0001233456666666666654321               012356789999999998


Q ss_pred             CCCC------cCCcCCCCCCeEeccCCcCcCc-------cccCCCCCccEEEccCCCCCCc------cccccCCCCcEEE
Q psy14728        203 LRTI------ENLEALTNLTQLYLSENGLTTI-------ENLLSNEKLETLDVAYNKISII------QNIAHLTELQEFW  263 (319)
Q Consensus       203 ~~~~------~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~  263 (319)
                      +..-      ..+...+.+++|++++|.++..       ..+..+++|+.|++++|.++..      ..+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            7642      1255678999999999998741       2367789999999999998632      3577899999999


Q ss_pred             cCCCcCCCCccc---cccc--CCCCCcEEEcCCCcCcCChh--hHHHHHHhCCceEEEeccc
Q psy14728        264 INDNQVSDWNTV---NVLE--NNKQLQTIYLDRNPVAQDPN--YRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       264 l~~n~~~~~~~~---~~~~--~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~L~~l~~~~  318 (319)
                      +++|.+++....   ..+.  ..+.|+.|++++|.++....  +...+...++.|+.|++++
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            999999874332   2222  24679999999999875422  2223334789999999976

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=3e-15  Score=118.22  Aligned_cols=107  Identities=34%  Similarity=0.425  Sum_probs=72.8

Q ss_pred             hcccccccceEEEecCCcccCccccccCCCCCEEEccCCCccCccCC-CCCCCCcEEEccCCCCccccCCCCCCCccEEE
Q psy14728         53 DEESKEVCIERLLLRWNLIKKIENIHMLTTLKELELYDNQLTVIENL-DTLINLEILDLSFNRIREIKGLDHLANLEKLY  131 (319)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~  131 (319)
                      ..++.+++|+.|++++|.|+.++.+..+++|++|++++|.++.++.+ ..++.|++|++++|.++.++++..+++|+.|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~  121 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEE
T ss_pred             hHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            45666777777777777777776677777777777777777665543 33456777777777777666666667777777


Q ss_pred             ccCCcccccC---CCCCCCCccEEEccCCcC
Q psy14728        132 LCSNKISKIE---NVDHLKKLKVLELGDNKI  159 (319)
Q Consensus       132 l~~~~~~~~~---~~~~~~~L~~L~l~~~~~  159 (319)
                      +++|+++.++   .+..+++|+.|++++|++
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccchhccccccccccCCCccceeecCCCcc
Confidence            7777766543   456666677777666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.3e-11  Score=88.25  Aligned_cols=113  Identities=18%  Similarity=0.217  Sum_probs=83.3

Q ss_pred             CCCCEEECCCCCCCCCc-CCcCCCCCCeEeccCC-cCcCcc--ccCCCCCccEEEccCCCCCCcc--ccccCCCCcEEEc
Q psy14728        191 TKLNILSLQCNRLRTIE-NLEALTNLTQLYLSEN-GLTTIE--NLLSNEKLETLDVAYNKISIIQ--NIAHLTELQEFWI  264 (319)
Q Consensus       191 ~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l  264 (319)
                      ...+.++..++.+...+ .+..++++++|++.++ .++.++  .+..+++|+.|++++|+++.++  ++..+++|++|++
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34455666666665543 3667788888888765 477765  3778888999999999888763  4788899999999


Q ss_pred             CCCcCCCCcccccccCCCCCcEEEcCCCcCcCChhhHHHHH
Q psy14728        265 NDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQDPNYRRKIK  305 (319)
Q Consensus       265 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  305 (319)
                      ++|+++..+. ..+. ..+|+.|++++|++.+++...|...
T Consensus        88 s~N~l~~l~~-~~~~-~~~l~~L~L~~Np~~C~C~~~~l~~  126 (156)
T d2ifga3          88 SFNALESLSW-KTVQ-GLSLQELVLSGNPLHCSCALRWLQR  126 (156)
T ss_dssp             CSSCCSCCCS-TTTC-SCCCCEEECCSSCCCCCGGGHHHHH
T ss_pred             cCCCCcccCh-hhhc-cccccccccCCCcccCCchHHHHHH
Confidence            9999987543 3343 3468999999999998888765433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8e-10  Score=82.97  Aligned_cols=100  Identities=19%  Similarity=0.301  Sum_probs=56.5

Q ss_pred             ccEEEcCCCCCccc-cCCCCCCCCCEEECCCCC-CCCCc--CCcCCCCCCeEeccCCcCcCccc--cCCCCCccEEEccC
Q psy14728        171 LEELYLGKNKISRI-DNLASLTKLNILSLQCNR-LRTIE--NLEALTNLTQLYLSENGLTTIEN--LLSNEKLETLDVAY  244 (319)
Q Consensus       171 L~~L~l~~~~l~~~-~~l~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~  244 (319)
                      .+.+++.++...+. ..+..++++++|++.+++ ++.++  .+..+++|+.|++++|+++.++.  +..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34455554444333 334555566666665443 55443  35666666666666666666542  56666667777777


Q ss_pred             CCCCCccc-cccCCCCcEEEcCCCcCC
Q psy14728        245 NKISIIQN-IAHLTELQEFWINDNQVS  270 (319)
Q Consensus       245 ~~~~~~~~-l~~~~~L~~L~l~~n~~~  270 (319)
                      |+++.++. .....+|++|++++|.+.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCcccChhhhccccccccccCCCccc
Confidence            76665532 223345677777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.9e-10  Score=83.29  Aligned_cols=85  Identities=15%  Similarity=0.348  Sum_probs=69.3

Q ss_pred             CCCCCccEEEccCCCCCCccc----cccCCCCcEEEcCCCcCCCCcccccccCCCCCcEEEcCCCcCcCC----hhhHHH
Q psy14728        232 LSNEKLETLDVAYNKISIIQN----IAHLTELQEFWINDNQVSDWNTVNVLENNKQLQTIYLDRNPVAQD----PNYRRK  303 (319)
Q Consensus       232 ~~~~~L~~L~l~~~~~~~~~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~  303 (319)
                      ..++.|++|++++|+++.++.    +..+++|+.|++++|.+++++....+. ...|+.|++++|++...    ..|+..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHHH
Confidence            467889999999999987643    457899999999999999976544444 45799999999999854    457778


Q ss_pred             HHHhCCceEEEecc
Q psy14728        304 IKLVCPWIVQIDAT  317 (319)
Q Consensus       304 ~~~~~~~L~~l~~~  317 (319)
                      ++..+|+|+.||..
T Consensus       141 i~~~~P~L~~LDg~  154 (162)
T d1koha1         141 IRERFPKLLRLDGH  154 (162)
T ss_dssp             HHTTSTTCCEETTE
T ss_pred             HHHHCCCCCEECcC
Confidence            88999999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=2.7e-06  Score=63.89  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             CCCCCEEECCCC-CCCC--C----cCCcCCCCCCeEeccCCcCcCc------cccCCCCCccEEEccCCCCCCc------
Q psy14728        190 LTKLNILSLQCN-RLRT--I----ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKISII------  250 (319)
Q Consensus       190 ~~~L~~L~l~~~-~~~~--~----~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~------  250 (319)
                      .+.|++|+++++ .+..  +    ..+...++|++|++++|.+..-      ..+...+.|++|++++|.++.-      
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            456666666653 2322  1    1244455666666666665521      1134445566666666655421      


Q ss_pred             cccccCCCCcEEEcCCCcCCCCc------ccccccCCCCCcEEEcCCC
Q psy14728        251 QNIAHLTELQEFWINDNQVSDWN------TVNVLENNKQLQTIYLDRN  292 (319)
Q Consensus       251 ~~l~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~~L~~L~l~~n  292 (319)
                      .++...++|++|++++|.+....      ....+...+.|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            23455556666666655443221      1233344556666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.2e-06  Score=64.03  Aligned_cols=83  Identities=22%  Similarity=0.353  Sum_probs=55.3

Q ss_pred             cCCCCCCeEeccCCcCcCccc----cCCCCCccEEEccCCCCCCcccc--ccCCCCcEEEcCCCcCCCCcc------ccc
Q psy14728        210 EALTNLTQLYLSENGLTTIEN----LLSNEKLETLDVAYNKISIIQNI--AHLTELQEFWINDNQVSDWNT------VNV  277 (319)
Q Consensus       210 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~l--~~~~~L~~L~l~~n~~~~~~~------~~~  277 (319)
                      ..+++|++|++++|+++.++.    +..+++|+.|++++|.++.++.+  .....|+.+++++|++.....      ...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            346777777788877776543    34567888888888888776542  234568888888888865321      123


Q ss_pred             ccCCCCCcEEEcCCCcC
Q psy14728        278 LENNKQLQTIYLDRNPV  294 (319)
Q Consensus       278 ~~~~~~L~~L~l~~n~~  294 (319)
                      +..+|+|+.||  |.++
T Consensus       142 ~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         142 RERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HTTSTTCCEET--TEEC
T ss_pred             HHHCCCCCEEC--cCCC
Confidence            56788888764  5444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=8.4e-06  Score=61.08  Aligned_cols=108  Identities=11%  Similarity=0.051  Sum_probs=70.6

Q ss_pred             CCCCCCeEeccCC-cCcC--c----cccCCCCCccEEEccCCCCCC--c----cccccCCCCcEEEcCCCcCCCCccc--
Q psy14728        211 ALTNLTQLYLSEN-GLTT--I----ENLLSNEKLETLDVAYNKISI--I----QNIAHLTELQEFWINDNQVSDWNTV--  275 (319)
Q Consensus       211 ~~~~L~~L~l~~~-~~~~--~----~~~~~~~~L~~L~l~~~~~~~--~----~~l~~~~~L~~L~l~~n~~~~~~~~--  275 (319)
                      ..++|++|+++++ .++.  +    ..+...+.|++|++++|.+..  .    ..+...+.|++|++++|.+++....  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4577888888764 3542  1    235666788888888887763  1    2355667888888888888763322  


Q ss_pred             -ccccCCCCCcEEEcCCCcCcCCh----hhHHHHHHhCCceEEEeccc
Q psy14728        276 -NVLENNKQLQTIYLDRNPVAQDP----NYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       276 -~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~~~L~~l~~~~  318 (319)
                       ..+...+.|+.|++++|.+....    .....++...+.|+.+++++
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence             34556677888888887655432    11245556778888887765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.46  E-value=0.00014  Score=53.97  Aligned_cols=105  Identities=22%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             CCCCCCEEECCCC-CCCC--C----cCCcCCCCCCeEeccCCcCcCc------cccCCCCCccEEEccCCCCCCc-----
Q psy14728        189 SLTKLNILSLQCN-RLRT--I----ENLEALTNLTQLYLSENGLTTI------ENLLSNEKLETLDVAYNKISII-----  250 (319)
Q Consensus       189 ~~~~L~~L~l~~~-~~~~--~----~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~-----  250 (319)
                      +.+.|++|+++++ .++.  +    ..+...++|++|++++|.++.-      ..+...+.++.++++++.++..     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4466667766653 3432  1    1234556666666666665531      1234455666666666665421     


Q ss_pred             -cccccCCCCcEEEcC--CCcCCCCc---ccccccCCCCCcEEEcCCCc
Q psy14728        251 -QNIAHLTELQEFWIN--DNQVSDWN---TVNVLENNKQLQTIYLDRNP  293 (319)
Q Consensus       251 -~~l~~~~~L~~L~l~--~n~~~~~~---~~~~~~~~~~L~~L~l~~n~  293 (319)
                       ..+...++|+.+++.  +|.+++..   ....+...+.|+.|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             335555666654443  44454421   22333455666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=9.7e-05  Score=54.94  Aligned_cols=109  Identities=12%  Similarity=0.181  Sum_probs=70.1

Q ss_pred             cCCCCCCeEeccC-CcCcC--c----cccCCCCCccEEEccCCCCCCc------cccccCCCCcEEEcCCCcCCCCccc-
Q psy14728        210 EALTNLTQLYLSE-NGLTT--I----ENLLSNEKLETLDVAYNKISII------QNIAHLTELQEFWINDNQVSDWNTV-  275 (319)
Q Consensus       210 ~~~~~L~~L~l~~-~~~~~--~----~~~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~n~~~~~~~~-  275 (319)
                      ...++|++|++++ +.++.  +    ..+...++|++|++++|.++.-      ..+...++++.+++++|.+++.... 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3457888888887 34542  1    2255678888888888877631      2355678888888888887763322 


Q ss_pred             --ccccCCCCCcEEEcC--CCcCcCCh-hhHHHHHHhCCceEEEeccc
Q psy14728        276 --NVLENNKQLQTIYLD--RNPVAQDP-NYRRKIKLVCPWIVQIDATL  318 (319)
Q Consensus       276 --~~~~~~~~L~~L~l~--~n~~~~~~-~~~~~~~~~~~~L~~l~~~~  318 (319)
                        ..+...++|+.++++  +|++.... ......+..++.|+.|++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence              445667788776664  44554332 22344556788888888754