Psyllid ID: psy14767

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccccEEcccccccEEEccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccEEccHHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEccHHHcccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccccccccEEEEcccccEEEEcccccccEcccccccccEEEEcccccEEEccHHHHHHccccccEEEEEccccccEccHHHHHccccccEEEcccccccEccccccHHHHcEEEcccccccEcccHHHcccccccEEEccccccEEccccHHcccccccEEEcccccccEccccHcc
Coil and Loop (DISEMBL)
MCHKFILSVFLLTLLASvtqascplgcsckwkagkrtvecidrnfytipegidldtqvLDLSSNNINVLQKEIFLQMGITNIQKLYLRKcklefvddrafrgvtnmdeldlsdnllstvpsliyipylksinlahnpihqissysfqstpgiryidmsncqihtiyseafygidkidtlklngnklaslkprtws
Flexible Loop (DISEMBL)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDtlklngnklaslkprtws
Low Complexity Region (SEG)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS
Disordered region (IsUnstruct)
**HKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG************
Disordered Region (DISOPRED)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP*TWS
Disordered Region (DISEMBL)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS
Disordered Region (DISPRO)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR*W*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
Q8C031	640	Leucine-rich repeat-conta	yes	N/A	0.871	0.265	0.296	3e-19
Q9HCJ2	640	Leucine-rich repeat-conta	yes	N/A	0.871	0.265	0.296	3e-19
Q9NT99	713	Leucine-rich repeat-conta	no	N/A	0.851	0.232	0.287	2e-17
P0CC10	709	Leucine-rich repeat-conta	no	N/A	0.851	0.234	0.287	4e-17
P0C192	709	Leucine-rich repeat-conta	no	N/A	0.851	0.234	0.287	4e-17
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.876	0.112	0.268	9e-16
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.876	0.112	0.268	9e-16
Q9HBW1	653	Leucine-rich repeat-conta	no	N/A	0.8	0.238	0.306	3e-15
Q99PH1	652	Leucine-rich repeat-conta	no	N/A	0.8	0.239	0.306	3e-15
Q45R42	652	Leucine-rich repeat-conta	no	N/A	0.8	0.239	0.306	3e-15

>sp|Q8C031|LRC4C_MOUSE Leucine-rich repeat-containing protein 4C OS=Mus musculus GN=Lrrc4c PE=1 SV=2

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 29/199 (14%)

Query: 18  VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
           V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N I +++   F  +
Sbjct: 42  VRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 99

Query: 78  GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAH 135
              +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P  + +Y+  LK + L +
Sbjct: 100 --RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 157

Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGID-------------------- 174
           NPI  I SY+F   P +R +D+   +  +  SE AF G+                     
Sbjct: 158 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP 217

Query: 175 --KIDTLKLNGNKLASLKP 191
             K+D L L+GN L++++P
Sbjct: 218 LIKLDELDLSGNHLSAIRP 236

May promote neurite outgrowth of developing thalamic neurons.
Mus musculus (taxid: 10090)

>sp|Q9HCJ2|LRC4C_HUMAN Leucine-rich repeat-containing protein 4C OS=Homo sapiens GN=LRRC4C PE=1 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 29/199 (14%)

Query: 18  VTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM 77
           V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N I +++   F  +
Sbjct: 42  VRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 99

Query: 78  GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAH 135
              +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P  + +Y+  LK + L +
Sbjct: 100 --RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 157

Query: 136 NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGID-------------------- 174
           NPI  I SY+F   P +R +D+   +  +  SE AF G+                     
Sbjct: 158 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP 217

Query: 175 --KIDTLKLNGNKLASLKP 191
             K+D L L+GN L++++P
Sbjct: 218 LIKLDELDLSGNHLSAIRP 236

May promote neurite outgrowth of developing thalamic neurons.

Homo sapiens (taxid: 9606)

>sp|Q9NT99|LRC4B_HUMAN Leucine-rich repeat-containing protein 4B OS=Homo sapiens GN=LRRC4B PE=2 SV=3

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 29/195 (14%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           SCP+ CSC  +A +  V C  R+   +P  I ++T+ L+L  N I V++ + F  +   +
Sbjct: 56  SCPVACSCSNQASR--VICTRRDLAEVPASIPVNTRYLNLQENGIQVIRTDTFKHL--RH 111

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L K  +  ++  AF G+ +++ L+L DN L+TVP+    Y+  L+ + L +NPI 
Sbjct: 112 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 171

Query: 140 QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG----------------------IDKI 176
            I SY+F   P +R +D+   + +  I   AF G                      + ++
Sbjct: 172 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 231

Query: 177 DTLKLNGNKLASLKP 191
           + L+L+GN+L  ++P
Sbjct: 232 EELELSGNRLDLIRP 246

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Homo sapiens (taxid: 9606)

>sp|P0CC10|LRC4B_RAT Leucine-rich repeat-containing protein 4B OS=Rattus norvegicus GN=Lrrc4b PE=1 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 29/195 (14%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F  +   +
Sbjct: 58  SCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL--RH 113

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L K  +  ++  AF G+ +++ L+L DN L+TVP+    Y+  L+ + L +NPI 
Sbjct: 114 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 173

Query: 140 QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG----------------------IDKI 176
            I SY+F   P +R +D+   + +  I   AF G                      + ++
Sbjct: 174 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 233

Query: 177 DTLKLNGNKLASLKP 191
           + L+L+GN+L  ++P
Sbjct: 234 EELELSGNRLDLIRP 248

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Rattus norvegicus (taxid: 10116)

>sp|P0C192|LRC4B_MOUSE Leucine-rich repeat-containing protein 4B OS=Mus musculus GN=Lrrc4b PE=1 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 29/195 (14%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F  +   +
Sbjct: 58  SCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL--RH 113

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L K  +  ++  AF G+ +++ L+L DN L+TVP+    Y+  L+ + L +NPI 
Sbjct: 114 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 173

Query: 140 QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYG----------------------IDKI 176
            I SY+F   P +R +D+   + +  I   AF G                      + ++
Sbjct: 174 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 233

Query: 177 DTLKLNGNKLASLKP 191
           + L+L+GN+L  ++P
Sbjct: 234 EELELSGNRLDLIRP 248

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Mus musculus (taxid: 10090)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 13  TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE 72
           ++L+    A+CP  C+C       +V+C       +P GI  + + LDL  NNI  + K 
Sbjct: 24  SILSGPPAAACPTKCTCSAA----SVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKM 79

Query: 73  IFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
            F   G+ N++ L+L   ++  ++  AF+ +  ++ L L+ N L  +P L++   P L  
Sbjct: 80  DF--AGLKNLRVLHLEDNQVSIIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTR 137

Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           ++L+ N I  I   +F+   G++ + + N  I  I   AF  +  ++ L LN N ++ +
Sbjct: 138 LDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRI 196

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 13  TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE 72
           ++L+    A+CP  C+C       +V+C       +P GI  + + LDL  NNI  + K 
Sbjct: 24  SILSGPPAAACPTKCTCSAA----SVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKM 79

Query: 73  IFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKS 130
            F   G+ N++ L+L   ++  ++  AF+ +  ++ L L+ N L  +P L++   P L  
Sbjct: 80  DF--TGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTR 137

Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           ++L+ N I  I   +F+   G++ + + N  I  I   AF  +  ++ L LN N ++ +
Sbjct: 138 LDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRI 196

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 OS=Homo sapiens GN=LRRC4 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 45  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 100

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160

Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKL 181
            I SY+F   P +  +D+    ++  I   AF G+  +  L L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Synaptic adhesion protein. Regulates the formation of exitatory synapses through the recruitment of pre-and-postsynaptic proteins. Organize the lamina/pathway-specific differentiation of dendrites. Plays a important role for auditory synaptic responses. Involved in the suppression of glioma.

Homo sapiens (taxid: 9606)

>sp|Q99PH1|LRRC4_MOUSE Leucine-rich repeat-containing protein 4 OS=Mus musculus GN=Lrrc4 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 44  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 99

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 100 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 159

Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKL 181
            I SY+F   P +  +D+    ++  I   AF G+  +  L L
Sbjct: 160 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 202

Synaptic adhesion protein. Regulates the formation of exitatory synapses through the recruitment of pre-and-postsynaptic proteins. Organize the lamina/pathway-specific differentiation of dendrites. Plays a important role for auditory synaptic responses. Involved in the suppression of glioma.

Mus musculus (taxid: 10090)

>sp|Q45R42|LRRC4_RAT Leucine-rich repeat-containing protein 4 OS=Rattus norvegicus GN=Lrrc4 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 44  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH--H 99

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 100 LEVLQLGRNAIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 159

Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKL 181
            I SY+F   P +  +D+    ++  I   AF G+  +  L L
Sbjct: 160 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 202

Synaptic adhesion protein. Regulates the formation of exitatory synapses through the recruitment of pre-and-postsynaptic proteins. Organize the lamina/pathway-specific differentiation of dendrites. Plays a important role for auditory synaptic responses. Involved in the suppression of glioma.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
91081765	605	PREDICTED: similar to kek1 [Tribolium ca	0.887	0.285	0.508	1e-49
328715086	748	PREDICTED: hypothetical protein LOC10016	0.856	0.223	0.485	1e-48
195176173	817	GL10073 [Drosophila persimilis] gi|19411	0.923	0.220	0.5	9e-46
198472318	886	GA11531 [Drosophila pseudoobscura pseudo	0.923	0.203	0.5	1e-45
383858349	627	PREDICTED: leucine-rich repeat-containin	0.964	0.299	0.476	1e-45
66499167	630	PREDICTED: leucine-rich repeat-containin	0.974	0.301	0.442	2e-45
1736918	880	KEK1 precursor [Drosophila melanogaster]	0.892	0.197	0.505	3e-45
442627668	880	kekkon-1 [Drosophila melanogaster] gi|44	0.892	0.197	0.505	3e-45
77455260	871	CG12283 [Drosophila yakuba]	0.892	0.199	0.505	3e-45
77455256	864	CG12283 [Drosophila simulans]	0.892	0.201	0.505	3e-45

>gi|91081765|ref|XP_973226.1| PREDICTED: similar to kek1 [Tribolium castaneum] gi|270006351|gb|EFA02799.1| kekkon-1 [Tribolium castaneum]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 134/175 (76%), Gaps = 2/175 (1%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
            +CP  C+CKWK GK+TVEC +R   TIPE +D +TQVLDLS NN+ +L +E F++ G+ 
Sbjct: 19  GNCPSPCTCKWKGGKQTVECTERGLITIPESVDPETQVLDLSGNNLQILPRETFVRSGLL 78

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
           N+Q+++LR+C++  +DD AFRG+TN+ ELDLS NLL+ VPS  +  +P+L+ + LA+NPI
Sbjct: 79  NLQRVFLRRCRIGQIDDLAFRGLTNLIELDLSHNLLTAVPSGTFRDVPFLRDLVLAYNPI 138

Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
            +I S +F++ PG+  +D+SNC+I  I S+AF GI+ +++LKLNGN+L+ L+ RT
Sbjct: 139 QKIDSQAFKTIPGLIKLDLSNCEIQVIASKAFEGIEMLESLKLNGNRLSELRLRT 193

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328715086|ref|XP_003245526.1| PREDICTED: hypothetical protein LOC100160315 [Acyrthosiphon pisum]

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/169 (48%), Positives = 123/169 (72%), Gaps = 2/169 (1%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSCKWK G+RTVEC DR   T+P G+D DTQVLDLS NN+ +L  E F + G+ N+
Sbjct: 33  CPAVCSCKWKGGRRTVECADRALITVPTGVDADTQVLDLSGNNLQILPNETFYKAGLANL 92

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
           QK YLR C++  +D+ AFRG+TN+ ELDLS+N+L++VPS ++  +PYL+ +++A NPI +
Sbjct: 93  QKAYLRNCRIGQIDESAFRGLTNLIELDLSNNMLTSVPSYVFRDVPYLRDLSVAGNPIQK 152

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           I +++F   P +  +D SNC + ++   AF G+ +++TL++NGN+L  L
Sbjct: 153 IEAHAFSGCPSVVKVDASNCGLQSVAGLAFSGVVRLETLRINGNRLTEL 201

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195176173|ref|XP_002028708.1| GL10073 [Drosophila persimilis] gi|194111221|gb|EDW33264.1| GL10073 [Drosophila persimilis]

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 126/182 (69%), Gaps = 2/182 (1%)

Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L A+  Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E 
Sbjct: 57  LDANPAQSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDTNTQVLDMSGNKLQTLSNEQ 116

Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSI 131
           F++  + N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   YIP L+ +
Sbjct: 117 FVRANLLNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGYIPSLREL 176

Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
            LA N IH+I   +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P
Sbjct: 177 TLASNHIHKIEGQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLP 236

Query: 192 RT 193
           +T
Sbjct: 237 KT 238

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472318|ref|XP_001355897.2| GA11531 [Drosophila pseudoobscura pseudoobscura] gi|198138961|gb|EAL32956.2| GA11531 [Drosophila pseudoobscura pseudoobscura]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 126/182 (69%), Gaps = 2/182 (1%)

Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L A+  Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E 
Sbjct: 84  LDANPAQSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDTNTQVLDMSGNKLQTLSNEQ 143

Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSI 131
           F++  + N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   YIP L+ +
Sbjct: 144 FVRANLLNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGYIPSLREL 203

Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
            LA N IH+I   +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P
Sbjct: 204 TLASNHIHKIEGQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLP 263

Query: 192 RT 193
           +T
Sbjct: 264 KT 265

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858349|ref|XP_003704664.1| PREDICTED: leucine-rich repeat-containing protein 4-like [Megachile rotundata]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 138/193 (71%), Gaps = 5/193 (2%)

Query: 7   LSVFLL---TLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
           +SVFLL   T L  VT   C   CSCKWK+GKRTVECI+R   +IPE +D +TQVLD S 
Sbjct: 3   ISVFLLYVTTFLGIVTSDKCADECSCKWKSGKRTVECINRALTSIPEWVDPETQVLDTSG 62

Query: 64  NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
           N+I  L   IF+++ +TN+Q+LYLR+C+++ +D  A  G+TN+ ELDLS NLL+ VPS  
Sbjct: 63  NDIRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPSAS 122

Query: 124 Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL 181
           +   P+L+ + L++NP+ +I S++F+STP +  +D+SN Q+  I S+ F G++ +++LKL
Sbjct: 123 FTDTPFLRDLVLSNNPLKRIHSHAFKSTPNLVKLDLSNTQLVEIESKGFRGLELLESLKL 182

Query: 182 NGNKLASLKPRTW 194
           N N+L++L P T+
Sbjct: 183 NNNQLSTLHPGTF 195

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66499167|ref|XP_624568.1| PREDICTED: leucine-rich repeat-containing protein 24 [Apis mellifera]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 139/192 (72%), Gaps = 2/192 (1%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
            I  +++ TLL  VT   C + CSCKWK+GKRTVEC++R   +IPE +D +TQVLD S N
Sbjct: 4   LIFFLYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWVDPETQVLDTSGN 63

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
           +I  L   IF+++ +TN+Q+LYLR+C+++ +D  A  G+TN+ ELDLS NLL+ VP+  +
Sbjct: 64  DIRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPTASF 123

Query: 125 I--PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN 182
           +  P+L+ + L++NP+ ++ S++F+STP +  +D+S+ Q+  I ++ F G+D +++LKLN
Sbjct: 124 LDTPFLRDLVLSYNPLKRVHSHAFKSTPNLVKLDLSHTQLVEIEAKGFRGLDLLESLKLN 183

Query: 183 GNKLASLKPRTW 194
            N+L++L P T+
Sbjct: 184 NNQLSTLHPGTF 195

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1736918|gb|AAC47404.1| KEK1 precursor [Drosophila melanogaster]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 87  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 146

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 147 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 206

Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           IH+I S +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P+T
Sbjct: 207 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKT 262

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442627668|ref|NP_523559.3| kekkon-1 [Drosophila melanogaster] gi|440213755|gb|AAF53225.3| kekkon-1 [Drosophila melanogaster]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 87  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 146

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 147 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 206

Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           IH+I S +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P+T
Sbjct: 207 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKT 262

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77455260|gb|ABA86439.1| CG12283 [Drosophila yakuba]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 80  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 139

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 140 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 199

Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           IH+I S +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P+T
Sbjct: 200 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKT 255

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77455256|gb|ABA86437.1| CG12283 [Drosophila simulans]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 20  QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
           Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct: 79  QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 138

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
            N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct: 139 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 198

Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           IH+I S +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P+T
Sbjct: 199 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKT 254

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.892	0.197	0.505	6.5e-44
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.917	0.200	0.434	1.1e-35
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.958	0.183	0.380	1.4e-31
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.948	0.221	0.310	1.6e-22
UNIPROTKB|E2REC5	639	LRRC4C "Uncharacterized protei	0.933	0.284	0.307	3.5e-20
UNIPROTKB|F1SHH6	640	LRRC4C "Uncharacterized protei	0.933	0.284	0.307	3.5e-20
UNIPROTKB|F1MXH5	640	LRRC4C "Uncharacterized protei	0.933	0.284	0.307	3.5e-20
UNIPROTKB|Q9HCJ2	640	LRRC4C "Leucine-rich repeat-co	0.933	0.284	0.307	3.5e-20
MGI|MGI:2442636	640	Lrrc4c "leucine rich repeat co	0.933	0.284	0.307	3.5e-20
RGD|1311013	640	Lrrc4c "leucine rich repeat co	0.933	0.284	0.307	3.5e-20

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 471 (170.9 bits), Expect = 6.5e-44, P = 6.5e-44
 Identities = 89/176 (50%), Positives = 124/176 (70%)

Query:    20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGI 79
             Q++C   C+CKWK GK+TVECIDR+   IPE ID +TQVLD+S N +  L  E F++  +
Sbjct:    87 QSTCQTVCACKWKGGKQTVECIDRHLIQIPEHIDPNTQVLDMSGNKLQTLSNEQFIRANL 146

Query:    80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNP 137
              N+QKLYLR CK+  ++   F+G+TN+ ELDLS NLL TVPSL   +IP L+ + LA N 
Sbjct:   147 LNLQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNH 206

Query:   138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
             IH+I S +F +TP +  +D+S+C I TI ++AF G+  +  L+LNGNKL+ L P+T
Sbjct:   207 IHKIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKT 262

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 79/182 (43%), Positives = 122/182 (67%)

Query:    11 LLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQ 70
             LL LLA +T A  P  C CKWK GK+TVEC  +    +PEG+D  TQVL+ S N + VLQ
Sbjct:    10 LLALLA-ITAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQVLQ 68

Query:    71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--L 128
              E FL+M + N+QK+YL + +L  + ++AFRG+TN+ ELDLS+N L  VPS  +  Y  L
Sbjct:    69 SERFLRMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDYSSL 128

Query:   129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
               ++L+ NPI ++ + +F+    +  +++SNCQ+  I +EAF G+D ++ L+L+GN++  
Sbjct:   129 MRLSLSGNPIRELKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRIGF 188

Query:   189 LK 190
             ++
Sbjct:   189 IQ 190

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 358 (131.1 bits), Expect = 1.4e-31, P = 1.4e-31
 Identities = 73/192 (38%), Positives = 120/192 (62%)

Query:     7 LSVFLLTLLASVTQ--ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
             L ++LL   + + Q  A CP  C CKWK+GK +V C++ N   IP+ +D  TQ+LDLS N
Sbjct:    61 LLLWLLCCCSQLGQLRAECPAVCECKWKSGKESVLCLNANLTHIPQPLDAGTQLLDLSGN 120

Query:    65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSL-I 123
              I ++  + F    + N+QK+YL +C L  ++  AFR + N+ ELDLS NLLS +PSL +
Sbjct:   121 EIQLIPDDSFATAQLLNLQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLAL 180

Query:   124 Y-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK-IDTLKL 181
             Y +  L+ + L+ NPI ++   +F   P +  +++S+C++  I   AF G++  ++ LKL
Sbjct:   181 YHVSELRELRLSGNPILRVPDDAFGHVPQLVKLELSDCRLSHIAVRAFAGLESSLEWLKL 240

Query:   182 NGNKLASLKPRT 193
             +GN+L+ ++  T
Sbjct:   241 DGNRLSEVRSGT 252

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 272 (100.8 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 58/187 (31%), Positives = 102/187 (54%)

Query:     5 FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
             +IL   +   +A     SC   C+CKW  GK++  C      TIP  +  + QVL L+ N
Sbjct:    20 WILLCLVAWTVADDWSLSCASNCTCKWTNGKKSAICSSLQLTTIPNTLSTELQVLVLNDN 79

Query:    65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
             +I  L +E F  +G+ N+Q++YL+K +++++   +FR +  + E+DLSDN L  +    +
Sbjct:    80 HIPYLNREEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKDTF 139

Query:   125 I--PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN 182
             +    L+ + L  NP+ ++++Y F   P +R +DM +C I  I   +   ++ ++ L L 
Sbjct:   140 MGNDRLRILYLNGNPLKRLAAYQFPILPHLRTLDMHDCLISYIDPMSLANLNLLEFLNLK 199

Query:   183 GNKLASL 189
              N L SL
Sbjct:   200 NNLLESL 206

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|E2REC5 LRRC4C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 59/192 (30%), Positives = 106/192 (55%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKL- 181
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF G+  +  L L 
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

Query:   182 --NGNKLASLKP 191
               N  ++ +L P
Sbjct:   206 MCNLREIPNLTP 217

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SHH6 LRRC4C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 59/192 (30%), Positives = 106/192 (55%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKL- 181
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF G+  +  L L 
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

Query:   182 --NGNKLASLKP 191
               N  ++ +L P
Sbjct:   206 MCNLREIPNLTP 217

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MXH5 LRRC4C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 59/192 (30%), Positives = 106/192 (55%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLRDVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKL- 181
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF G+  +  L L 
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

Query:   182 --NGNKLASLKP 191
               N  ++ +L P
Sbjct:   206 MCNLREIPNLTP 217

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HCJ2 LRRC4C "Leucine-rich repeat-containing protein 4C" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 59/192 (30%), Positives = 106/192 (55%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKL- 181
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF G+  +  L L 
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

Query:   182 --NGNKLASLKP 191
               N  ++ +L P
Sbjct:   206 MCNLREIPNLTP 217

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0050770 "regulation of axonogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2442636 Lrrc4c "leucine rich repeat containing 4C" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 59/192 (30%), Positives = 106/192 (55%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKL- 181
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF G+  +  L L 
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

Query:   182 --NGNKLASLKP 191
               N  ++ +L P
Sbjct:   206 MCNLREIPNLTP 217

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=ISO;ISS

RGD|1311013 Lrrc4c "leucine rich repeat containing 4C" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 59/192 (30%), Positives = 106/192 (55%)

Query:     6 ILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNN 65
             +L++ LL +   V   +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N 
Sbjct:    30 LLALQLLVVAGLVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQ 87

Query:    66 INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LI 123
             I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+   +
Sbjct:    88 IQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 145

Query:   124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKL- 181
             Y+  LK + L +NPI  I SY+F   P +R +D+   +  +  SE AF G+  +  L L 
Sbjct:   146 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

Query:   182 --NGNKLASLKP 191
               N  ++ +L P
Sbjct:   206 MCNLREIPNLTP 217

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	195
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LDLS+N + V+    F  +   N++ L L    L  +   AF G+ ++  LDLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGL--PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 20/59 (33%), Positives = 37/59 (62%)

Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
           LKS++L++N +  I   +F+  P ++ +D+S   + +I  EAF G+  + +L L+GN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
           N++ L L   +L  + D AF+G+ N+  LDLS N L+++   +   +P L+S++L+ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 15/40 (37%), Positives = 28/40 (70%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS 143
           TN++ LDLS+N ++ +P L  +P L++++L+ N I  +S 
Sbjct: 1   TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	195
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-20
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-18
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-18
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-16
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-13
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-12
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-12
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-10
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-10
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-10
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		3e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		5e-10
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-10
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		6e-10
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		1e-09
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		1e-09
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		2e-09
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-09
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		1e-08
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		1e-08
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-08
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		3e-08
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		2e-07
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		4e-08
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-07
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-08
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		1e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		9e-08
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-08
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		5e-08
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		1e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-08
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		9e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		6e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		7e-08
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		8e-08
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		8e-08
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		1e-07
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		9e-08
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-07
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-07
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-07
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		8e-07
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-06
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		9e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		6e-05
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		6e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		3e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		3e-04
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		4e-04
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		5e-04
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		5e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		5e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		5e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		5e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		6e-04

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 29/195 (14%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C+ +N   +P+GI  +T++L+L  N I +++   F  +   +
Sbjct: 34  TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL--RH 89
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIH 139
           ++ L L +  +  ++  AF G+ N++ L+L DN L+T+P  + +Y+  LK + L +NPI 
Sbjct: 90  LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGID----------------------KI 176
            I SY+F   P +R +D+   +  +  SE AF G+                       K+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209
Query: 177 DTLKLNGNKLASLKP 191
           D L L+GN L++++P
Sbjct: 210 DELDLSGNHLSAIRP 224

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 19  TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
           T  SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F  + 
Sbjct: 2   TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
             +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L +N
Sbjct: 59  -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG----------------------I 173
           PI  I SY+F   P +R +D+    ++  I   AF G                      +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 174 DKIDTLKLNGNKLASLKP 191
            +++ L+L+GN+L  ++P
Sbjct: 178 VRLEELELSGNRLDLIRP 195

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 19  TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
           T  SCP  CSC  +A +  V C  R    +P  I ++T+ L+L  N+I V++ + F  + 
Sbjct: 2   TGTSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHL- 58
Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHN 136
             +++ L L K  +  ++  AF G+ +++ L+L DN L+TVP  +  Y+  L+ + L +N
Sbjct: 59  -RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 137 PIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYG----------------------I 173
           PI  I SY+F   P +R +D+    ++  I   AF G                      +
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 174 DKIDTLKLNGNKLASLKP 191
            +++ L+L+GN+L  ++P
Sbjct: 178 VRLEELELSGNRLDLIRP 195

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC  +  K  V C  R    +P+GI  +T+ L+L  NNI ++Q + F  +   +
Sbjct: 45  NCPSVCSCSNQFSK--VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHL--HH 100
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIH 139
           ++ L L +  +  ++  AF G+ +++ L+L DN L+ +PS    Y+  L+ + L +NPI 
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 140 QISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKL 181
            I SY+F   P +  +D+    ++  I   AF G+  +  L L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 6/176 (3%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
            CP  C C   A  R V C  + F  +PEGI  +T++LDL  N I  L ++ F      +
Sbjct: 2   GCPPRCECS--AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEF--ASFPH 57
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
           +++L L +  +  V+  AF  + N+  L L  N L  +P  ++  +  L  ++++ N I 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
            +  Y FQ    ++ +++ +  +  I   AF G++ ++ L L    L S+     S
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 105 NMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
           N+  L ++   L+ VP L   ++ YL+ +NL++NPI  I          ++ I +   Q+
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 163 HTIYSEAFYGIDKIDTLKLNGNKLASLK 190
             +   AF G++ +  L ++GN+L +L+
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           GC+C    GK+ V+C  ++  ++P GI  DT+ LDL S  +  L    F   G+T +  L
Sbjct: 9   GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143
            L   +L+ +    F  +T +  L L++N L+++P  ++  +  L  + L  N +  + S
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
             F     ++ + ++  Q+ +I + AF  +  + TL L+ N+L S+
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           GC+C    GK+ V+C  ++  ++P GI  DT+ LDL S  +  L    F   G+T +  L
Sbjct: 9   GCTCN--EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKLTWL 64
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS 143
            L   +L+ +    F  +T +  L L++N L+++P  ++  +  L  + L  N +  + S
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 144 YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
             F     ++ + ++  Q+ +I + AF  +  + TL L+ N+L S+
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 6/175 (3%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 57
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIH 139
             L+L    L  +D  AF G+  +++LDLSDN  L S  P+  + +  L +++L    + 
Sbjct: 58  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
           ++    F+    ++Y+ + +  +  +  + F  +  +  L L+GN+++S+  R +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 6/175 (3%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN--LLSTVPSLIY-IPYLKSINLAHNPIH 139
             L+L    L  +D  AF G+  +++LDLSDN  L S  P+  + +  L +++L    + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
           ++    F+    ++Y+ + +  +  +  + F  +  +  L L+GN+++S+  R +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F +  +T +
Sbjct: 1   CPSRCSCSGTE----IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK--LTQL 54
Query: 83  QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
            KL L    L F     ++  G T++  LDLS N + T+ S  + +  L+ ++  H+ + 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
           Q+S +S F S   + Y+D+S+      ++  F G+  ++ LK+ GN  
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 1   CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASF--QSCRNL 57
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIH 139
             L+L    L  +D  AF G+T +++LDLSDN  L  V    +  + +L +++L    + 
Sbjct: 58  TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           ++    F+    ++Y+ + +  +  +    F  +  +  L L+GN++ S+
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TVEC  +   ++P GI   T  LDL +N++  L   +F ++  T++
Sbjct: 1   CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDEL--TSL 54
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
            +LYL   KL+ + +  F  +T++  L+LS N L ++P+ ++  +  LK + L  N +  
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
           +    F     ++ + +   Q+ ++    F   D++ +L+
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQ 151

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF------------ 74
           CSC     K +V+C  +    IP  I  DT+ LDL SN ++ L  + F            
Sbjct: 12  CSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69
Query: 75  ------LQMGI----TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
                 L  GI     N++ L++   KL+ +    F  + N+ EL L  N L ++P  ++
Sbjct: 70  DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 125 --IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN 182
             +  L  ++L +N +  +    F     ++ + + N Q+  +   AF  + ++ TLKL+
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 183 GNKL 186
            N+L
Sbjct: 190 NNQL 193

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 15  LASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIF 74
           L     A CP GC C      R V+C D     +P+ I  DT +LDL +N+I+ L+K+ F
Sbjct: 19  LPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF 74
Query: 75  LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS---- 130
              G+ ++  L L   K+  + ++AF  +  + +L +S N L  +P     P L S    
Sbjct: 75  --KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-----PNLPSSLVE 127
Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE--AFYGIDKIDTLKLNGNKLAS 188
           + +  N I ++    F     +  I+M    +     E  AF G+ K++ L+++  KL  
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186
Query: 189 L 189
           +
Sbjct: 187 I 187

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  C C+      TV+C ++    IPE I   T  L L++N   VL+     +  +  
Sbjct: 4   ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKK-LPQ 58
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
           ++K+     K+  +++ AF G + ++E+ L+ N L  V   ++  +  LK++ L  N I 
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
            + + SF     +R + + + QI T+   AF  +  + TL L  N
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 10/181 (5%)
Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L +  +  SCP  C C        + C  +    +P+ +   T +LDLS NN++ L+ E 
Sbjct: 3   LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE- 57
Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI 131
           +    +TN+  L L    L F+   AF  V N+  LDLS N L T+   ++  +  L+ +
Sbjct: 58  WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT---LKLNGNKLAS 188
            L +N I  +   +F+    ++ + +S  QI     E     +K+     L L+ NKL  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 189 L 189
           L
Sbjct: 178 L 178

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           A CP  CSC     +  V C +    ++P GI  D Q L L++N I  L+  +F  +   
Sbjct: 4   AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--V 57
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           N+Q+LY    KL  +    F  +T + +LDL+DN L ++P   +  +  L  I L +NP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 9/166 (5%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           A+CP  CSC       TV+C  +   ++P GI  + Q+L L  N I  L+  +F    + 
Sbjct: 11  AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLI 64
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
           N+++LYL   +L  +    F  +T +  LDL  N L+ +PS ++  + +LK + +  N +
Sbjct: 65  NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
            ++     +    + ++ +   Q+ +I   AF  +  +    L GN
Sbjct: 125 TELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
           D  LS VP  I     K+I+L+ NP+  + SYSF +   ++++D+S C+I TI  +A++G
Sbjct: 15  DQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 73
Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
           +  +  L L GN + S  P ++S
Sbjct: 74  LHHLSNLILTGNPIQSFSPGSFS 96

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
           D  LS VP  I     K+I+L+ NP+  + SYSF +   ++++D+S C+I TI  +A++G
Sbjct: 20  DQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
           +  +  L L GN + S  P ++S
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFS 101

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C+      TV+C  R    IP  I L T  L L+ N +  +  +      + ++
Sbjct: 2   CPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGR-LPHL 56
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIP--YLKSINLAHNPIHQ 140
            KL L++ +L  ++  AF G +++ EL L +N +  + + +++    LK++NL  N I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 141 ISSYSFQSTPGIRYIDMS----NCQIHTIY 166
           +   SF+    +  ++++    NC  H  +
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 31/169 (18%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           G  C       T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L
Sbjct: 1   GSPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVL 58
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
            L +C+++ ++D A++ ++++  L L+ N            LS++  L+           
Sbjct: 59  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
               ++  LK +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 166

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 32  KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 189 L 189
           L
Sbjct: 92  L 92

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 167

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 33  KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 189 L 189
           L
Sbjct: 93  L 93

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 70
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 71  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKE 130
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 131 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 167

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 33  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 189 L 189
           L
Sbjct: 93  L 93

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LKPRTWS 195
           L    +S
Sbjct: 91  LALGAFS 97

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           ++CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T
Sbjct: 9   SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--T 62
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            + +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 63  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 L 189
           L
Sbjct: 91  L 91

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 35  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 92
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 93  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 153 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 189

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 55  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 189 LKPRTWS 195
           L    +S
Sbjct: 115 LALGAFS 121

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 31/158 (19%)
Query: 37  TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L L +C+++ ++
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIE 68
Query: 97  DRAFRGVTNMDELDLSDNL-----------LSTVPSLI---------------YIPYLKS 130
           D A++ ++++  L L+ N            LS++  L+               ++  LK 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 131 INLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
           +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 129 LNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 165

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 189 LKPRTWS 195
           L    +S
Sbjct: 91  LALGAFS 97

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T 
Sbjct: 2   ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQ 55
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           + +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 26  GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKL 85
           G  C       T +C + NFY IP+ +   T+ LDLS N +  L    F       +Q L
Sbjct: 1   GSPCVEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVL 58
Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNL-----------LSTVPSLI----------- 123
            L +C+++ ++D A++ ++++  L L+ N            LS++  L+           
Sbjct: 59  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 118
Query: 124 ----YIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIY 166
               ++  LK +N+AHN I   ++  Y F +   + ++D+S+ +I +IY
Sbjct: 119 FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY 166

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A+  +  + TL L GN + S
Sbjct: 32  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 189 L 189
           L
Sbjct: 92  L 92

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           +CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T 
Sbjct: 2   ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRL--TQ 55
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           + +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 56  LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 43  RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           R+F +IP G+    + LDLS N I  +           N+Q L L+  ++  ++  AF  
Sbjct: 41  RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 98
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
           + +++ LDLSDN LS++ S  + P   LK +NL  NP   +   S        + +++N 
Sbjct: 99  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTNL 151
Query: 161 QIHTIYS-EAFYGIDKID 177
           Q   I + E F  I +ID
Sbjct: 152 QTLRIGNVETFSEIRRID 169

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 43  RNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           R+F +IP G+    + LDLS N I  +           N+Q L L+  ++  ++  AF  
Sbjct: 15  RSFTSIPSGLTAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYS 72
Query: 103 VTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC 160
           + +++ LDLSDN LS++ S  + P   LK +NL  NP   +   S        + +++N 
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTNL 125
Query: 161 QIHTIYS-EAFYGIDKID 177
           Q   I + E F  I +ID
Sbjct: 126 QTLRIGNVETFSEIRRID 143

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 60  DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
           DLS + I  L K +F     T++++L L + ++  +DD AF G+T++ +L+LS N L ++
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
            S ++  +  L+ ++L++N I  +   SF   P ++ + +   Q+ ++    F  +  + 
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398
Query: 178 TLKLNGNKLASLKPR 192
            + L+ N      PR
Sbjct: 399 KIWLHTNPWDCSCPR 413

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
           A+CP  CSC       TV C +R+  ++P GI   TQVL L  N I  L+  +F    +T
Sbjct: 11  AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVF--DSLT 64
Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            +  L L   +L  +    F  +T +  L L  N L ++P  ++  +  L  I L +NP
Sbjct: 65  QLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F    + N+
Sbjct: 25  CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
             L L   K+  +   AF  +  ++ L LS N L  +P  +    L+ + +  N I ++ 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVR 137
Query: 143 SYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKIDTLKL 181
              F     +  +++    + +  I + AF G+ K+  +++
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F    + N+
Sbjct: 25  CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF--KNLKNL 78
Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
             L L   K+  +   AF  +  ++ L LS N L  +P  +    L+ + +  N I ++ 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVR 137
Query: 143 SYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKIDTLKL 181
              F     +  +++    + +  I + AF G+ K+  +++
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 29  CKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLR 88
           C  K G RT  C +     IP+ +   T+VL+ S N +  +Q   F ++   N+  L L 
Sbjct: 7   CTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRL--INLIFLDLT 64
Query: 89  KCKLEFVDDRAFRGVTNMDELDLSDNLL---------------------STVPSLIYIPY 127
           +C++ +V +  F+    ++ + L+ N L                     + + +L +IP 
Sbjct: 65  RCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPV 124
Query: 128 -----LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL- 181
                L+S++L  N I  I+      T  ++ +D  N  IH I  +    +++   L L 
Sbjct: 125 HNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLN 184
Query: 182 -NGNKLASLKPRTW 194
            NGN +  ++P  +
Sbjct: 185 FNGNDIKGIEPGAF 198

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           SC     CK  +G         +  +IP G+    + LDLS+N I  +      +    N
Sbjct: 29  SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR--CVN 77
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
           +Q L L    +  +++ +F  + +++ LDLS N LS + S  + P   L  +NL  NP  
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHT-IYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
            +   S F     ++ + + N    T I  + F G+  ++ L+++ + L S +P++
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 15/176 (8%)
Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           SC     CK  +G         +  +IP G+    + LDLS+N I  +     LQ  + N
Sbjct: 3   SCDRNGICKGSSG---------SLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCV-N 51
Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPY--LKSINLAHNPIH 139
           +Q L L    +  +++ +F  + +++ LDLS N LS + S  + P   L  +NL  NP  
Sbjct: 52  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHT-IYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
            +   S F     ++ + + N    T I  + F G+  ++ L+++ + L S +P++
Sbjct: 112 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 167

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 96  DDRAFRGV--TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPG 151
           D   F G+  +++  LDLS   + ++ S ++  +  LK +NLA+N I++I+  +F     
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 152 IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
           ++ +++S   +  +YS  FYG+ K+  + L  N +A ++ +T+
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
           +TN+  L L   +L+ + +  F  +TN+ EL L +N L ++P  ++  +  L  +NLAHN
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
            +  +    F     +  +D+S  Q+ ++    F  + ++  L+L  N+L S+
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHN 136
           +TN+  L L   +L+ + +  F  +TN+ EL L +N L ++P  ++  +  L  + L HN
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
            +  +    F     +  +D+ N Q+ ++    F  + ++  L LN N+L S+
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM----- 77
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F ++     
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
Query: 78  -----------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                             +T +  LYL + KL+ + +  F  +T + EL L  N L +VP
Sbjct: 57  LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 121 SLIY--IPYLKSINLAHNP 137
             I+  +  L+ I L  NP
Sbjct: 117 DGIFDRLTSLQKIWLHTNP 135

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 60  DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
           DLS + I  L K +F     T++++L L + ++  +DD AF G+T++ EL L  N L +V
Sbjct: 281 DLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSV 338
Query: 120 PSLIY--IPYLKSINLAHNP 137
           P  I+  +  L+ I L  NP
Sbjct: 339 PDGIFDRLTSLQKIWLHTNP 358

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  R    +P  +  DT +L LS N +          M  T + +L 
Sbjct: 4   CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
           L +C+L               +L +   L          P L +++L+HN +  +     
Sbjct: 62  LDRCELT--------------KLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  R    +P  +  DT +L LS N +          M  T + +L 
Sbjct: 4   CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
           L +C+L               +L +   L          P L +++L+HN +  +     
Sbjct: 62  LDRCELT--------------KLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  R    +P  +  DT +L LS N +          M  T + +L 
Sbjct: 4   CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
           L +C+L  +            ++D +            +P L +++L+HN +  +     
Sbjct: 62  LDRCELTKL------------QVDGT------------LPVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  R    +P  +  DT +L LS N +          M  T + +L 
Sbjct: 4   CEVSKVASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLN 61
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
           L +C+L  +            ++D +            +P L +++L+HN +  +     
Sbjct: 62  LDRCELTKL------------QVDGT------------LPVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  RN   +P  +  DT +L LS N +        +          Y
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP---------Y 54
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
            R  +L    DRA      +D                 +P L +++L+HN +  +     
Sbjct: 55  TRLTQLNL--DRAELTKLQVDG---------------TLPVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  RN   +P  +  DT +L LS N +        +          Y
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP---------Y 54
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
            R  +L    DRA      + +L +   L          P L +++L+HN +  +     
Sbjct: 55  TRLTQLNL--DRA-----ELTKLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  RN   +P  +  DT +L LS N +        +          Y
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMP---------Y 54
Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
            R  +L    DRA      + +L +   L          P L +++L+HN +  +     
Sbjct: 55  TRLTQLNL--DRA-----ELTKLQVDGTL----------PVLGTLDLSHNQLQSLPLLG- 96
Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 25/173 (14%)
Query: 37  TVECIDRN-FYTIPEGIDLDT---QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
           TV  ++RN   ++P GI  +T     L +S+NN+  ++ + F     T++Q L L   +L
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRL 183
Query: 93  EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYL----KSINLAHNPIH-QISSYSFQ 147
             VD      + ++   ++S NLLST+   I +  L     SIN+   P++ +++    Q
Sbjct: 184 THVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240
Query: 148 ST-----------PGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
                        PG+  +D+S  ++  I    F  + +++ L ++ N+L +L
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 25/173 (14%)
Query: 37  TVECIDRN-FYTIPEGIDLDT---QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
           TV  ++RN   ++P GI  +T     L +S+NN+  ++ + F     T++Q L L   +L
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRL 177
Query: 93  EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYL----KSINLAHNPIH-QISSYSFQ 147
             VD      + ++   ++S NLLST+   I +  L     SIN+   P++ +++    Q
Sbjct: 178 THVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234
Query: 148 ST-----------PGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
                        PG+  +D+S  ++  I    F  + +++ L ++ N+L +L
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
           +  I L  N I  I   +F     +R ID+SN QI  +  +AF G+  +++L L GNK+ 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 SL 189
            L
Sbjct: 94  EL 95

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
           +  I L  N I  I   +F     +R ID+SN QI  +  +AF G+  +++L L GNK+ 
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 188 SL 189
            L
Sbjct: 94  EL 95

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIYI-PYLKSINLAHNP 137
           +NI  L L   +L  +    F   + +  LD   N +S + P L  I P LK +NL HN 
Sbjct: 25  SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 138 IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
           + QIS  +F     +  +D+ +  IH I S  F     +  L L+ N L+S K
Sbjct: 85  LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTK 137

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69  LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
           L +++ L++  T+I+ L L   +L    +  F G+  TN+  LDLS N L+ V   S  +
Sbjct: 221 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 280
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
           +P L+   L +N I  + S+S      +RY+++   +  T  S +   + KID
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKID 331

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69  LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
           L +++ L++  T+I+ L L   +L    +  F G+  TN+  LDLS N L+ V   S  +
Sbjct: 216 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 275
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
           +P L+   L +N I  + S+S      +RY+++   +  T  S +   + KID
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKID 326

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 69  LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV--TNMDELDLSDNLLSTV--PSLIY 124
           L +++ L++  T+I+ L L   +L    +  F G+  TN+  LDLS N L+ V   S  +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270
Query: 125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
           +P L+   L +N I  + S+S      +RY+++   +  T  S +   + KID
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK--RSFTKQSISLASLPKID 321

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-04

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  147 bits (372), Expect = 2e-43
 Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 10/187 (5%)

Query: 14  LLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEI 73
           L +  +  SCP  C C        + C  +    +P+ +   T +LDLS NN++ L+ E 
Sbjct: 3   LASGRSVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEW 58

Query: 74  FLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSI 131
                +TN+  L L    L F+   AF  V N+  LDLS N L T+       +  L+ +
Sbjct: 59  TPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117

Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK---IDTLKLNGNKLAS 188
            L +N I  +   +F+    ++ + +S  QI     E     +K   +  L L+ NKL  
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 189 LKPRTWS 195
           L      
Sbjct: 178 LPLTDLQ 184

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  136 bits (343), Expect = 2e-38
 Identities = 56/194 (28%), Positives = 102/194 (52%), Gaps = 13/194 (6%)

Query: 5   FILSVFLLTLL------ASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV 58
            +L V LL++L       + +  +CP  CSC  +     V C+ +N   +P+GI  +T++
Sbjct: 11  ALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRL 68

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
           L+L  N I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T
Sbjct: 69  LNLHENQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126

Query: 119 VPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDK 175
           +P+   +Y+  LK + L +NPI  I SY+F   P +R +D+    ++  I   AF G+  
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 176 IDTLKLNGNKLASL 189
           +  L L    L  +
Sbjct: 187 LRYLNLAMCNLREI 200

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 7e-30
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 28/191 (14%)

Query: 5   FILSVFLLTLLASVTQA-SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSS 63
            +LSV L+  +A    A +CP  CSC  +     V C+ +N   +P+GI  +T++L+L  
Sbjct: 16  SLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHE 73

Query: 64  NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
           N I +++   F  +   +++ L L +  +  ++  AF G+ N++ L+L DN L+T+P+  
Sbjct: 74  NQIQIIKVNSFKHL--RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-- 129

Query: 124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL-N 182
                                +F     ++ + + N  I +I S AF  I  +  L L  
Sbjct: 130 --------------------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 183 GNKLASLKPRT 193
             +L+ +    
Sbjct: 170 LKRLSYISEGA 180

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (265), Expect = 2e-27
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 3/138 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
           + L L +N I  +    F    I ++++L L +  +L ++ + AF G++N+  L+L+   
Sbjct: 139 KELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
           L  +P+L  +  L  ++L+ N +  I   SFQ    ++ + M   QI  I   AF  +  
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 176 IDTLKLNGNKLASLKPRT 193
           +  + L  N L  L    
Sbjct: 257 LVEINLAHNNLTLLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 3e-20
 Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 57  QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
           + LDL     ++ + +  F   G++N++ L L  C L  +       +  +DELDLS N 
Sbjct: 163 RRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNH 218

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
           LS +   S   + +L+ + +  + I  I   +F +   +  I++++  +  +  + F  +
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 174 DKIDTLKLNGN 184
             ++ + L+ N
Sbjct: 279 HHLERIHLHHN 289

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  122 bits (309), Expect = 1e-34
 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 6/174 (3%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C     K T  C  +    +P GI   +Q + L  N I+ +    F      N+
Sbjct: 2   CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF--RACRNL 58

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVPS--LIYIPYLKSINLAHNPIH 139
             L+L    L  +D  AF G+  +++LDLSDN  L +V       +  L +++L    + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           ++    F+    ++Y+ + +  +  +  + F  +  +  L L+GN+++S+  R 
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 4e-23
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L    +  L   +F  +    +Q LYL+   L+ + D  FR + N+  L L  N +
Sbjct: 108 HTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
           S+VP  +   +  L  + L  N +  +  ++F+    +  + +    +  + +EA   + 
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 175 KIDTLKLNGN 184
            +  L+LN N
Sbjct: 226 ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  N I+ + +  F   G+ ++ +L L + ++  V   AFR +  +  L L  N L
Sbjct: 156 THLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 117 STVPSLIY--IPYLKSINLAHNPIH 139
           S +P+     +  L+ + L  NP  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
                   L  VP  I     + I L  N I  + + SF++   +  + + +  +  I +
Sbjct: 15  TTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 168 EAFYGIDKIDTLKLNGN-KLASLKPRTWS 195
            AF G+  ++ L L+ N +L S+ P T+ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFH 102

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (307), Expect = 5e-34
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 9/173 (5%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
             CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F    + 
Sbjct: 23  PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLK 76

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
           N+  L L   K+  +   AF  +  ++ L LS N L  +P  +    L+ + +  N I +
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITK 135

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKIDTLKLNGNKLASLKP 191
           +    F     +  +++    + +  I + AF G+ K+  +++    + ++  
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVTNMDELDLSDN 114
           Q L +  N I  ++K +F   G+  +  + L    L+   +++ AF+G+  +  + ++D 
Sbjct: 124 QELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
            ++T+P  +  P L  ++L  N I ++ + S +    +  + +S   I  + + +     
Sbjct: 182 NITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 175 KIDTLKLNGNKLASL 189
            +  L LN NKL  +
Sbjct: 241 HLRELHLNNNKLVKV 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
           TIP+G+      L L  N I  +        G+ N+ KL L    +  VD+ +     ++
Sbjct: 185 TIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 107 DELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIHQISSYSFQST------PGIRYIDMSN 159
            EL L++N L  VP  L    Y++ + L +N I  I S  F              + + +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 160 CQIHT--IYSEAFYGIDKIDTLKLNGNK 185
             +    I    F  +     ++L   K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
             +  SD  L  VP  +  P    ++L +N I +I    F++   +  + + N +I  I 
Sbjct: 34  RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92

Query: 167 SEAFYGIDKIDTLKLNGNKLASLKPRT 193
             AF  + K++ L L+ N+L  L  + 
Sbjct: 93  PGAFAPLVKLERLYLSKNQLKELPEKM 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  117 bits (296), Expect = 2e-32
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 12  LTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK 71
           L  L     A CP GC C      R V+C D     +P+ I  DT +LDL +N+I+ L+K
Sbjct: 16  LDSLPPTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRK 71

Query: 72  EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSI 131
           + F   G+ ++  L L   K+  + ++AF  +  + +L +S N L  +P  +    L  +
Sbjct: 72  DDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVEL 128

Query: 132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH--TIYSEAFYGIDKIDTLKLNGNKLASL 189
            +  N I ++    F     +  I+M    +        AF G+ K++ L+++  KL  +
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187

Query: 190 KP 191
             
Sbjct: 188 PK 189

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 8e-22
 Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE--FVDDRAFRGVT 104
            IP  +      L +  N I  + K +F   G+ N+  + +    LE    +  AF G+ 
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172

Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
            ++ L +S+  L+ +P  +    L  ++L HN I  I          +  + + + QI  
Sbjct: 173 KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 165 IYSEAFYGIDKIDTLKLNGNKLASLKP 191
           I + +   +  +  L L+ NKL+ +  
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.4 bits (217), Expect = 5e-21
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 11/151 (7%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
               IP+ +      L L  N I  ++ E  L    + + +L L   ++  +++ +   +
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 104 TNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQST------PGIRYID 156
             + EL L +N LS VP+ +  +  L+ + L  N I ++    F              I 
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 157 MSNCQI--HTIYSEAFYGIDKIDTLKLNGNK 185
           + N  +    +    F  +     ++    K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 8e-12
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
           ++  +  SD  L  VP  I  P    ++L +N I ++    F+    +  + + N +I  
Sbjct: 34  HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 165 IYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           I+ +AF  + K+  L ++ N L  + P  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNL 121

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  116 bits (292), Expect = 5e-32
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F    +T +
Sbjct: 1   CPSRCSCS----GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54

Query: 83  QKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLSTVPS-LIYIPYLKSINLAHNPIH 139
            KL L    L F     ++  G T++  LDLS N + T+ S  + +  L+ ++  H+ + 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 140 QISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNK-LASLKPRTWS 195
           Q+S +S F S   + Y+D+S+      ++  F G+  ++ LK+ GN    +  P  ++
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  +  V    IF   G+++++ L +      E      F  + N+  LDLS   
Sbjct: 129 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
           L  +   +   +  L+ +N++HN    + ++ ++    ++ +D S   I T   +     
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 174 -DKIDTLKLNGNKLA 187
              +  L L  N  A
Sbjct: 247 PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 8e-21
 Identities = 20/140 (14%), Positives = 59/140 (42%), Gaps = 4/140 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN-L 115
           + LD   +N+  + +       + N+  L +         +  F G+++++ L ++ N  
Sbjct: 104 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 116 LSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
                      +  L  ++L+   + Q+S  +F S   ++ ++MS+    ++ +  +  +
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 174 DKIDTLKLNGNKLASLKPRT 193
           + +  L  + N + + K + 
Sbjct: 223 NSLQVLDYSLNHIMTSKKQE 242

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 1e-31
 Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 27/196 (13%)

Query: 1   MCHKFILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD 60
           +  +  +    +   AS    +CP  CSC  +     V C  R    +P+GI  +T+ L+
Sbjct: 24  LTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYLN 81

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
           L  NNI ++Q + F    + +++ L L +  +  ++  AF G+ +++ L+L DN L+ +P
Sbjct: 82  LMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139

Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
           S                       +F+    +R + + N  I +I S AF  +  +  L 
Sbjct: 140 S----------------------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177

Query: 181 L-NGNKLASLKPRTWS 195
           L    KL  +    + 
Sbjct: 178 LGELKKLEYISEGAFE 193

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (270), Expect = 6e-28
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
           + L L +N I  +    F    + ++ +L L +  KLE++ + AF G+ N+  L+L    
Sbjct: 150 RELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
           +  +P+L  +  L+ + ++ N   +I   SF     ++ + + N Q+  I   AF G+  
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 176 IDTLKLNGNKLASLKPRTWS 195
           +  L L  N L+SL    ++
Sbjct: 268 LVELNLAHNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 2e-19
 Identities = 22/131 (16%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 57  QVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
             LDL     +  + +  F   G+ N++ L L  C ++ + +     +  ++EL++S N 
Sbjct: 174 MRLDLGELKKLEYISEGAFE--GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
              +   S   +  LK + + ++ +  I   +F     +  +++++  + ++  + F  +
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 174 DKIDTLKLNGN 184
             +  L L+ N
Sbjct: 290 RYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 4e-15
 Identities = 25/99 (25%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 44  NFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG 102
           N   +P    L   + L++S N+   ++   F  +  ++++KL++   ++  ++  AF G
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQVSLIERNAFDG 264

Query: 103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
           + ++ EL+L+ N LS++P  ++  + YL  ++L HNP +
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 1e-30
 Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 30/200 (15%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLD--------------------- 60
            CP  C C  +   R V C  + F  +PEGI  +T++LD                     
Sbjct: 2   GCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 61  ---LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
              L+ N ++ ++   F    + N++ L LR  +L+ +    F G++N+ +LD+S+N + 
Sbjct: 60  ELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117

Query: 118 TVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
            +       +  LKS+ +  N +  IS  +F     +  + +  C + +I +EA   +  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 176 IDTLKLNGNKLASLKPRTWS 195
           +  L+L    + +++  ++ 
Sbjct: 178 LIVLRLRHLNINAIRDYSFK 197

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 1e-24
 Identities = 26/139 (18%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L   N+  +  E    +    +  L LR   +  + D +F+ +  +  L++S    
Sbjct: 155 EQLTLEKCNLTSIPTEALSHL--HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 117 STV--PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
                P+ +Y   L S+++ H  +  +   + +    +R++++S   I TI     + + 
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 175 KIDTLKLNGNKLASLKPRT 193
           ++  ++L G +LA ++P  
Sbjct: 273 RLQEIQLVGGQLAVVEPYA 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 5e-23
 Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD+S N I +L   +F    + N++ L +    L ++  RAF G+ ++++L L    L
Sbjct: 107 TKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYGI 173
           +++P  +L ++  L  + L H  I+ I  YSF+    ++ +++S    + T+     YG+
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 174 DKIDTLKLNGNKLASLKPRTWS 195
             + +L +    L ++      
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVR 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL++S            L     N+  L +  C L  V   A R +  +  L+LS N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYG--LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
           ST+    L  +  L+ I L    +  +  Y+F+    +R +++S  Q+ T+    F+ + 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 175 KIDTLKLNGNKL 186
            ++TL L+ N L
Sbjct: 321 NLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
            L+   L ++  N+  +       +    ++ L L    +  ++      +  + E+ L 
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 113 DNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
              L+ V       + YL+ +N++ N +  +    F S   +  + + +  + 
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (292), Expect = 1e-30
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 6/175 (3%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
            S    C  K     +T  C +     IP  +   T+ L+ S N +  +Q   F ++   
Sbjct: 2   TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRL--I 57

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPI 138
           N+  L L +C++ ++ +  F+    +D L L+ N L  +   +L     LK +      I
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
             I      +   +  + + +  I +I     +  +K+  L    N +  L    
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 25/153 (16%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 43  RNFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR 98
           +N   I +G+   T     +      +   +   +F  +   +++ + L+K     +   
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 99  AFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
            F   + + ELDL+   LS +PS +  +  LK + L+ N    +   S  + P + ++ +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 158 S-NCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
             N +   + +     ++ +  L L+ + + + 
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LDLS ++I            ++++Q L L   +   +   AF+    ++ LDL+   L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 117 STVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI---YSEAF 170
               +      +  LK +NL+H+ +   S   F   P ++++++            + + 
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 171 YGIDKIDTLKLNGNKLASLKPRT 193
             + +++ L L+   L+S+    
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++LDL+   + V   +   Q  +  ++ L L    L+   ++ F G+  +  L+L  N  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 117 STVP-----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
                    SL  +  L+ + L+   +  I  ++F S   + ++D+S+ ++ +   EA  
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 172 GIDKIDTLKLNGNKLASLKPRT 193
            +  I  L L  N ++ + P  
Sbjct: 522 HLKGI-YLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 7e-20
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
           Q L+LS N    L+ E F       ++ L L   +L+  D +  F+ +  +  L+LS +L
Sbjct: 379 QSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQI---SSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
           L          +P L+ +NL  N   +     + S Q+   +  + +S C + +I   AF
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 171 YGIDKIDTLKLNGNKLASLKPRTWS 195
             +  ++ + L+ N+L S      S
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALS 521

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.5 bits (207), Expect = 3e-19
 Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNL 115
           + L LS+N    L +         ++  L ++   K   +       + N+ ELDLS + 
Sbjct: 304 KKLVLSANKFENLCQISASNF--PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 116 LSTVP----SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE-AF 170
           + T       L  + +L+S+NL++N    + + +F+  P +  +D++  ++    ++  F
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 171 YGIDKIDTLKLNGNKLASLKPRTWS 195
             +  +  L L+ + L     + + 
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFD 446

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L++N +  + +      G   ++ L+  +  +  +D         ++ L L  N +
Sbjct: 84  DTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR--YIDMSNCQIHTIYSEAFYG 172
           S++          LK ++  +N IH +S     S        ++++   I  I   AF  
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 173 IDKIDTLKLNGNKLASLKPR 192
                +L   G +   +  +
Sbjct: 202 A-VFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 27/135 (20%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR---AFRGVTNMDELDLSD 113
           +VL+LS + +++  +++F   G+  +Q L L+       + +   + + +  ++ L LS 
Sbjct: 428 KVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 114 NLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY 171
             LS++   +   +  +  ++L+HN +   S  +     GI Y+++++  I  I      
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544

Query: 172 GIDKIDTLKLNGNKL 186
            + +  T+ L  N L
Sbjct: 545 ILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 9e-15
 Identities = 27/139 (19%), Positives = 42/139 (30%), Gaps = 7/139 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VLD  +N I+ L KE    +       L L    +  ++  AF        L+      
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN 214

Query: 117 STVP----SLIYIPYLKSINLAHNPIHQISSYSFQSTPG--IRYIDMSNCQIHTIYSEAF 170
             V         I  L            IS   F+      +  I++       I S  F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 171 YGIDKIDTLKLNGNKLASL 189
           +    +  L L    L+ L
Sbjct: 275 HCFSGLQELDLTATHLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 9e-15
 Identities = 18/160 (11%), Positives = 47/160 (29%), Gaps = 28/160 (17%)

Query: 54  LDTQVLDLSSNNINVLQKEIFLQM-----------------------GITNIQKLYLRKC 90
                L+L+ N+I  ++   F                           I ++        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 91  KLEFVDDRAFRGVTNMD--ELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSF 146
             E +    F G+  M    ++L  +    +   +      L+ ++L    + ++ S   
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GL 297

Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
                ++ + +S  +   +   +      +  L + GN  
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
           Q L+L  N+      +       +  ++ L L  C L  +D  AF  +  M+ +DLS N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 116 LSTVPSLIYIPYLKS--INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
           L++      + +LK   +NLA N I  I           R I++    + 
Sbjct: 512 LTSSSIEA-LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +DLS N +     E    +       L L    +  +       ++    ++L  N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHL---KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTP 150
               S   I +L+        +        ++ P
Sbjct: 560 DCTCSN--IYFLEWYKENMQKLEDTEDTLCENPP 591

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  107 bits (269), Expect = 2e-29
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 7/166 (4%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
            +CP  C C+      TV+C ++    IPE I   T  L L++N   VL+     +  + 
Sbjct: 3   LACPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK-KLP 57

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
            ++K+     K+  +++ AF G + ++E+ L+ N L  V   ++  +  LK++ L  N I
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
             + + SF     +R + + + QI T+   AF  +  + TL L  N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  109 bits (275), Expect = 3e-29
 Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 9/195 (4%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
           +++ V  + +  S  ++S     SC         +    +  +IP G+    + LDLS+N
Sbjct: 6   WMVWVLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN 62

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--L 122
            I  +           N+Q L L    +  +++ +F  + +++ LDLS N LS + S   
Sbjct: 63  RITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120

Query: 123 IYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLK 180
             +  L  +NL  NP   +   S F     ++ + + N      I  + F G+  ++ L+
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 181 LNGNKLASLKPRTWS 195
           ++ + L S +P++  
Sbjct: 181 IDASDLQSYEPKSLK 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L++ ++++   + +      I N+  L L   +   + +      ++++ L+L D  L
Sbjct: 177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 117 STVP----------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
            T            SLI     +++ +    + Q+         G+  ++ S  Q+ ++ 
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVP 293

Query: 167 SEAFYGIDKIDTLKLNGNKL 186
              F  +  +  + L+ N  
Sbjct: 294 DGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNL 115
             L+L  N    L +       +T +Q L +        +  + F G+T ++EL++  + 
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN--------CQIHTI 165
           L +    SL  I  +  + L       +       T  +  +++ +         ++ T 
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 166 YSEAFYGIDKIDTLKLNGNKLASL 189
            + +         +K+    L  +
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQV 269

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 54  LDTQVLDLSSNNINVLQKEIFLQ-MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
           L+ +  DL + + + L        +     + + +    L F   +    ++ + EL+ S
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFS 285

Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIH 139
            N L +VP  I+  +  L+ I L  NP  
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  105 bits (265), Expect = 2e-28
 Identities = 33/170 (19%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
                     T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L 
Sbjct: 5   EVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLD 58

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSY 144
           L +C+++ ++D A++ ++++  L L+ N + ++       +  L+ +      +  + ++
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 145 SFQSTPGIRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKPRT 193
                  ++ +++++  I +    E F  +  ++ L L+ NK+ S+    
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 13/148 (8%)

Query: 47  TIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV-DDRAFRG 102
           ++  G    L   Q L     N+  L+        +  +++L +    ++       F  
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 103 VTNMDELDLSDNLLSTVP-----SLIYIPYLK-SINLAHNPIHQISSYSFQSTPGIRYID 156
           +TN++ LDLS N + ++       L  +P L  S++L+ NP++ I   +F+    ++ + 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELA 206

Query: 157 MSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
           +   Q+ ++    F  +  +  + L+ N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 57  QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           + LDLSSN I  +       L         L L    + F+   AF+    + EL L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210

Query: 115 LLSTVPSLIY--IPYLKSINLAHNPIH 139
            L +VP  I+  +  L+ I L  NP  
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  100 bits (250), Expect = 1e-26
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 8/166 (4%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
             CP  C+C        V+C  +    IP  +      + L  N I V+    F      
Sbjct: 3   LHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYK 56

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPI 138
            ++++ L   ++  +   AF+G+ +++ L L  N ++ +P  ++  +  L+ + L  N I
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116

Query: 139 HQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
           + +   +FQ    +  + + + ++ TI    F  +  I T+ L  N
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 112 SDNLLSTVPSLIYIP-YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
               L+ +P+   +P  +  I L  N I  I   +F     +R ID+SN QI  +  +AF
Sbjct: 19  RGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 171 YGIDKIDTLKLNGNKLASLKPRT 193
            G+  +++L L GNK+  L    
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSL 99

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (262), Expect = 2e-26
 Identities = 28/160 (17%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 36  RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
              +C       +P+ +  +  VL+L+ N +  L    F +   + +  L +    +  +
Sbjct: 7   EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY--SQLTSLDVGFNTISKL 64

Query: 96  DDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR 153
           +    + +  +  L+L  N LS +   +  +   L  ++L  N I +I +  F     + 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 154 YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
            +D+S+  + +        ++ +  L L+ NK+ +LK   
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 3e-21
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L L    +  +         + N+  L L    +  ++D    G+  ++ LDL  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 117 STVPSLIYI----------PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
           + +                 +L  +NL  N   +I    F+    ++ ID+    ++T+ 
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 167 SEAFYGIDKIDTLKLNGNKLASLKPRT 193
           +  F     + +L L  N + S++ + 
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.1 bits (219), Expect = 9e-21
 Identities = 24/146 (16%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L LS+N I  L+ E       ++++KL L   +++      F  +  +  L L++  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 117 STVP-----SLIYIPYLKSINLAHNPIHQISSYSFQS--TPGIRYIDMSNCQIHTIYSEA 169
                      +    +++++L+++ +   S+ +F       +  +D+S   ++ + +++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 170 FYGIDKIDTLKLNGNKLASLKPRTWS 195
           F  + +++   L  N +  L   +  
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLH 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 28/144 (19%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 57  QVLDLSSNNINV--LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           + L LS++  ++  L  E F+ +  + +  L L K K+  ++  AF  + +++ LDL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 115 LLSTVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI--YSEA 169
            +           +  +  I L++N   Q++  SF   P ++ + +    +  +      
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
           F  +  +  L L+ N +A++    
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNL 115
            +L+L+ N I+ ++ + F    + +++ L L   ++   +  + +RG+ N+ E+ LS N 
Sbjct: 384 HILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSY--SFQSTPGIRYIDMSNCQIHTIYSEAFY 171
              +   S   +P L+ + L    +  + S    FQ    +  +D+SN  I  I  +   
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 172 GIDKIDTLKLNGNKLASLKPRTWS 195
           G++K++ L L  N LA L      
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANP 525

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL+L  N ++ L  + F     TN+ +L+L    ++ + +  F    N+  LDLS N L
Sbjct: 76  KVLNLQHNELSQLSDKTFAFC--TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYG 172
           S+    + + +  L+ + L++N I  + S      +   ++ +++S+ QI       F+ 
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 173 IDKIDTLKLNGNKLASLKPRT 193
           I ++  L LN  +L       
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 5e-20
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L LS++ ++      FL +  TN+  L L    L  V + +F  +  ++   L  N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 117 STVP--SLIYIPYLKSINLAHN---------PIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
             +   SL  +  ++ +NL  +          + +I  +SFQ    + +++M +  I  I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 166 YSEAFYGIDKIDTLKLNGNKL 186
            S  F G+  +  L L+ +  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 9e-19
 Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 14/151 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR--AFRGVTNMDELDLSDN 114
             + LS N    L +  F  +   ++Q+L LR+  L+ VD     F+ + N+  LDLS+N
Sbjct: 433 FEIYLSYNKYLQLTRNSFALV--PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 115 LLSTVPS--LIYIPYLKSINLAHNPIHQISS--------YSFQSTPGIRYIDMSNCQIHT 164
            ++ +    L  +  L+ ++L HN + ++          Y  +    +  +++ +     
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 165 IYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
           I  E F  + ++  + L  N L +L    ++
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               +S  ++  +    F  +    ++ L +    +  +    F G+ N+  L LS++  
Sbjct: 308 TKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 117 STVP------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT-IYSEA 169
           S           +    L  +NL  N I +I S +F     +  +D+   +I   +  + 
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 170 FYGIDKIDTLKLNGNKLASLKPRTWS 195
           + G++ I  + L+ NK   L   +++
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFA 451

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 8e-16
 Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA--------FRGVTNMDE 108
            +LDLS+NNI  +  ++   +    ++ L L+   L  +   A         +G++++  
Sbjct: 483 TILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 109 LDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
           L+L  N    +P      +  LK I+L  N ++ + +  F +   ++ +++    I ++ 
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 167 SEAFYGIDK-IDTLKLNGNKL 186
            + F    + +  L +  N  
Sbjct: 601 KKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 9e-13
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
            + +  D S   L+ VP  +    +  +NL HN + ++ + +F     +  +D+    I 
Sbjct: 4   VSHEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
            +  E    +  +  L L  N+L+ L  +T
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            +L+L SN  + +  E+F  +    ++ + L    L  +    F    ++  L+L  NL+
Sbjct: 539 HILNLESNGFDEIPVEVFKDL--FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 117 STVPSLIYIPYLKS---INLAHNPIH 139
           ++V   ++ P  ++   +++  NP  
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 8/69 (11%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 127 YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL 186
             +  + +H  + Q+      +      +++++ Q+  + +  F    ++ +L +  N +
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNI---TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 187 ASLKPRTWS 195
           + L+P    
Sbjct: 62  SKLEPELCQ 70

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 99.3 bits (248), Expect = 8e-26
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 19  TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMG 78
                   CSC     K +V+C  +    IP  I  DT+ LDL SN ++ L  + F    
Sbjct: 4   LCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF--HR 59

Query: 79  ITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHN 136
           +T ++ LYL   KL+ +    F+ + N++ L ++DN L  +P  +   +  L  + L  N
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 137 PIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
            +  +    F S   + Y+ +   ++ ++    F  +  +  L+L  N+L  +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 36  RTVECIDRNFYTIPEGI--DL-DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL 92
            T+   D     +P G+   L +   L L  N +  L   +F    +T +  L L   +L
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNEL 145

Query: 93  EFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTP 150
           + +    F  +T++ EL L +N L  VP   +  +  LK++ L +N + ++   +F S  
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 151 GIRYIDMSN 159
            ++ + +  
Sbjct: 206 KLKMLQLQE 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 1e-25
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 9/171 (5%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
            SC         +   R+F +IP G+    + LDLS N I  +           N+Q L 
Sbjct: 2   LSC---DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLI 56

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQIS-S 143
           L+  ++  ++  AF  + +++ LDLSDN LS++ S     +  LK +NL  NP   +  +
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 144 YSFQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
             F +   ++ + + N      I    F G+  ++ L++    L + + ++
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD+S N  + +            ++ L L    +  V     + +     LD+S+N L
Sbjct: 390 TSLDISRNTFHPMPDSCQ---WPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNL 443

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
            +     ++P L+ + ++ N +  +   S    P +  + +S  Q+ ++    F  +  +
Sbjct: 444 DSFSL--FLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 177 DTLKLNGNKL 186
             + L+ N  
Sbjct: 500 QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 21/140 (15%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
           + + + ++ + ++       +   +++ L L +  +      +        ++  L LS 
Sbjct: 313 KRITVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 114 NLLSTVPSLIYI----PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
           N L ++     I      L S++++ N  H +   S Q    +R++++S+  I  + +  
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI 429

Query: 170 FYGIDKIDTLKLNGNKLASL 189
                 ++ L ++ N L S 
Sbjct: 430 P---QTLEVLDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 5e-14
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 44  NFYTIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
            F+ +P+        + L+LSS  I V++  I        ++ L +    L+        
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-----QTLEVLDVSNNNLDSFS----L 448

Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
            +  + EL +S N L T+P     P L  + ++ N +  +    F     ++ I +    
Sbjct: 449 FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 162 IH 163
             
Sbjct: 509 WD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 6e-11
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 7/142 (4%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS 112
           D     L      I  L +  F    +  +        + + V +        +  L + 
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 113 DNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY---S 167
              L    S +Y  +  +K I + ++ +  +     Q    + ++D+S   +   Y   S
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
                   + TL L+ N L S+
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 6e-10
 Identities = 15/137 (10%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
           +   +   +VL  E F    +  + +  L   ++EF D      +  + + + S++ + +
Sbjct: 225 MKKLAFRGSVLTDESF--NELLKLLRYILELSEVEFDDCT----LNGLGDFNPSESDVVS 278

Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
               +    ++ +++    +    S  +     ++ I + N ++  +       +  ++ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 179 LKLNGNKLASLKPRTWS 195
           L L+ N +     +  +
Sbjct: 339 LDLSENLMVEEYLKNSA 355

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 99.5 bits (248), Expect = 2e-25
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 13/178 (7%)

Query: 23  CPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
           C    C C      R   C +     IP  +  +   L      + V+QK  F   G  +
Sbjct: 2   CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAF--SGFGD 55

Query: 82  IQKLYLRKCK-LEFVDDRAFRGVTNMDELDLSD-NLLSTVPS--LIYIPYLKSINLAHNP 137
           ++K+ + +   LE ++   F  +  + E+ +   N L  +       +P L+ + +++  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 138 IHQISSYSFQSTPGIRYIDMS-NCQIHTIYSEAFYGI-DKIDTLKLNGNKLASLKPRT 193
           I  +       +     +D+  N  IHTI   +F G+  +   L LN N +  +    
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVT-NMDELDLSDN 114
           Q L +S+  I  L     +         L ++    +  ++  +F G++     L L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 115 LLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
            +  + +         +     +N + ++ +  F    G   +D+S  +IH++ S     
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 173 IDKIDTLKLNGNK 185
           + K+        K
Sbjct: 225 LKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 51  GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD 110
           G+  ++ +L L+ N I  +    F   G    +        LE + +  F G +    LD
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 111 LSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSY-SFQSTPGIRYIDMSN 159
           +S   + ++PS  L  +  L++ +      + +    + +    +    ++ 
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARST-----YNLKKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
            ++    +NN+  L  ++F   G +    L + + ++  +       +  +         
Sbjct: 180 DELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 235

Query: 116 LSTVPSLIYIPYLKSINLAHN 136
           L  +P+L  +  L   +L + 
Sbjct: 236 LKKLPTLEKLVALMEASLTYP 256

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 96.2 bits (240), Expect = 6e-25
 Identities = 32/180 (17%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
                 C C     +       ++   IP  +   TQ L L   ++  +    F    + 
Sbjct: 2   GCSSPPCEC---HQEEDFRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAF--SNLP 55

Query: 81  NIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDN-LLSTVPS--LIYIPYLKSINLAHN 136
           NI ++Y+     L+ ++  +F  ++ +  +++ +   L+ +    L  +P LK + + + 
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 137 PIHQISSYSF-QSTPGIRYIDMS-NCQIHTIYSEAFYGIDK-IDTLKLNGNKLASLKPRT 193
            +      +   ST     ++++ N  + +I   AF G+     TLKL  N   S++   
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNM-DELDLSDN 114
           + L + +  + +      +         L +     +  +   AF+G+ N    L L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 115 LLSTVPSLIYI-PYLKSINLAHNP-IHQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFY 171
             ++V    +    L ++ L  N  +  I   +F     G   +D+S   +  + S+   
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226

Query: 172 GIDK 175
            + +
Sbjct: 227 HLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRG-VTNMDELDLSD 113
           T  L L +N    +Q   F     T +  +YL K K L  +D  AF G  +    LD+S 
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNG---TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 114 NLLSTVPS--LIYIPYLKSINL 133
             ++ +PS  L ++  L + N 
Sbjct: 215 TSVTALPSKGLEHLKELIARNT 236

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 9e-25
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 38  VECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           ++   ++ Y   E I L+  +++   ++ +  L   +        ++ L L   ++E +D
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEID 91

Query: 97  DRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
             AF     + +L +  N +  +P      +P L  + L  N +  +    F +TP +  
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151

Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           + MSN  +  I  + F     +  L+L+ N+L  +    
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 2e-21
 Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++L+L+   I  +    F       IQKLY+    + ++    F+ V  +  L L  N L
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 117 STVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
           S++P       P L ++++++N + +I   +FQ+T  ++ + +S+ ++  +         
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---P 192

Query: 175 KIDTLKLNGNKLASLKP 191
            +    ++ N L++L  
Sbjct: 193 SLFHANVSYNLLSTLAI 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.9 bits (202), Expect = 1e-18
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 27/152 (17%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L +S+NN+  ++ + F     T++Q L L   +L  VD      +      ++S NLL
Sbjct: 150 TTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLL 204

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS-------------------TPGIRYIDM 157
           ST+   I    ++ ++ +HN I+ +                           PG+  +D+
Sbjct: 205 STLAIPI---AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 261

Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           S  ++  I    F  + +++ L ++ N+L +L
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.1 bits (200), Expect = 2e-18
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              ++S N ++ L   I ++       +L      +  V       +T    L L  N L
Sbjct: 195 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 244

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           +    L+  P L  ++L++N + +I  + F     +  + +SN ++  + +     I  +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 303

Query: 177 DTLKLNGNKLASLKP 191
             L L+ N L  ++ 
Sbjct: 304 KVLDLSHNHLLHVER 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.2 bits (195), Expect = 1e-17
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQM-----------------GITNIQKLYLRK 89
           T+   I +  + LD S N+INV++  + +++                     + ++ L  
Sbjct: 206 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263

Query: 90  CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQS 148
            +LE +    F  +  ++ L +S+N L  +      IP LK ++L+HN +  +     Q 
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 322

Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
              +  + + +  I T+     + +  +    L+ N       R  
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRAL 365

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 22/156 (14%)

Query: 38  VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
           V+     +  I   +  D    D+  +         F  + + N + +  +   +  +  
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 98  RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
                                         ++ +NL    I +I +Y+F     I+ + M
Sbjct: 69  ALLDSFRQ----------------------VELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
               I  +    F  +  +  L L  N L+SL    
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VLDLS N++  +++          ++ LYL    +  +          +  L LS N  
Sbjct: 304 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 357

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
                      +    +     H    Y  + 
Sbjct: 358 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 38  VECIDRNFYTIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD 96
           ++   ++ Y   E I L+  +++   ++ +  L   +        ++ L L   ++E +D
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF--RQVELLNLNDLQIEEID 85

Query: 97  DRAFRGVTNMDELDLSDNLLSTVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
             AF     + +L +  N +  +P      +P L  + L  N +  +    F +TP +  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           + MSN  +  I  + F     +  L+L+ N+L  +    
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.3 bits (227), Expect = 3e-22
 Identities = 28/137 (20%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++L+L+   I  +    F       IQKLY+    + ++    F+ V  +  L L  N L
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 117 STVPS--LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
           S++P       P L ++++++N + +I   +FQ+T  ++ + +S+ ++  +         
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---P 186

Query: 175 KIDTLKLNGNKLASLKP 191
            +    ++ N L++L  
Sbjct: 187 SLFHANVSYNLLSTLAI 203

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 25/151 (16%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L +S+NN+  ++ + F     T++Q L L   +L  VD      +      ++S NLL
Sbjct: 144 TTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNRLTHVDLSLIPSLF---HANVSYNLL 198

Query: 117 STVPSLIYI------------------PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
           ST+   I +                    L  + L HN +   +     + PG+  +D+S
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLS 256

Query: 159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
             ++  I    F  + +++ L ++ N+L +L
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVAL 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              ++S N ++ L   I ++       +L      +  V       +T    L L  N L
Sbjct: 189 FHANVSYNLLSTLAIPIAVE-------ELDASHNSINVVRGPVNVELT---ILKLQHNNL 238

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           +    L+  P L  ++L++N + +I  + F     +  + +SN ++  + +     I  +
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 297

Query: 177 DTLKLNGNKLASLKP 191
             L L+ N L  ++ 
Sbjct: 298 KVLDLSHNHLLHVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQ-----------------MGITNIQKLYLRK 89
           T+   I +  + LD S N+INV++  + ++                 +    + ++ L  
Sbjct: 200 TLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257

Query: 90  CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQS 148
            +LE +    F  +  ++ L +S+N L  +      IP LK ++L+HN +  +     Q 
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ- 316

Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
              +  + + +  I T+     + +  +    L+ N       R  
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRAL 359

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 22/156 (14%)

Query: 38  VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD 97
           V+     +  I   +  D    D+  +         F  + + N + +  +   +  +  
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 98  RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
                                         ++ +NL    I +I +Y+F     I+ + M
Sbjct: 63  ALLDSFRQ----------------------VELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
               I  +    F  +  +  L L  N L+SL    
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 6/92 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VLDLS N++  +++          ++ LYL    +  +          +  L LS N  
Sbjct: 298 KVLDLSHNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
                      +    +     H    Y  + 
Sbjct: 352 DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 1e-23
 Identities = 34/168 (20%), Positives = 80/168 (47%), Gaps = 7/168 (4%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C         T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L 
Sbjct: 3   CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYLKSINLAHNPIHQISSY 144
           L +C+++ ++D A++ ++++  L L+ N + ++   +   +  L+ +      +  + ++
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 145 SFQSTPGIRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKP 191
                  ++ +++++  I +    E F  +  ++ L L+ NK+ S+  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 7/143 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
           + LDLS N +  +       +G+  ++ L  +   L+ + +   F  + N+  LD+S   
Sbjct: 376 KYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
                      +  L+ + +A N          F     + ++D+S CQ+  +   AF  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
           +  +  L ++ N   SL    + 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYK 515

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 7e-17
 Identities = 22/141 (15%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 57  QVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
           + LD   +N+  + +  +FL +   N+  L +         +  F G+++++ L ++ N 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 116 LSTVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
                       +  L  ++L+   + Q+S  +F S   ++ ++MS+    ++ +  +  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 173 IDKIDTLKLNGNKLASLKPRT 193
           ++ +  L  + N + + K + 
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  +  V    IF   G+++++ L +      E      F  + N+  LDLS   
Sbjct: 424 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
           L  +   +   +  L+ +N++HN    + ++ ++    ++ +D S   I T   +     
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 174 -DKIDTLKLNGNKL 186
              +  L L  N  
Sbjct: 542 PSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               L S  I  ++   +        Q L L  CK         +   ++  L  + N  
Sbjct: 285 SSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKG 337

Query: 117 STVPSLIYIPYLKSINLAHNPIH--QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
               S + +P L+ ++L+ N +      S S   T  ++Y+D+S   + T+ S  F G++
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLE 396

Query: 175 KIDTLKLNGNKLASLKP 191
           +++ L    + L  +  
Sbjct: 397 QLEHLDFQHSNLKQMSE 413

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I  L    F  +  +++QKL   +  L  +++     +  + EL+++ NL+
Sbjct: 79  STLILTGNPIQSLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
            +     Y      L+ ++L+ N I  I     +    +      +D+S   ++ I   A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 170 FYGIDKIDTLKLNGNKL 186
           F  I ++  L L  N  
Sbjct: 197 FKEI-RLHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS   +  L    F    ++++Q L +       +D   ++ + ++  LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 117 STVP--SLIYIPY-LKSINLAHNPIH 139
            T     L + P  L  +NL  N   
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
                +     +P  +     K+++L+ NP+  + SYSF S P ++ +D+S C+I TI  
Sbjct: 11  TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 168 EAFYGIDKIDTLKLNGNKLASLKPRT 193
            A+  +  + TL L GN + SL    
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 14/158 (8%)

Query: 44  NFYTIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVD 96
               I  G   ++    L L +N  ++ + K     +    + +L L +      LE  D
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 97  DRAFRGVTNMDELDLSDNLLSTVPSLI-----YIPYLKSINLAHNPIHQISSYSFQSTPG 151
             A  G+ N+   +     L      I      +  + S +L    I ++  +S+    G
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--G 305

Query: 152 IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
            +++++ NC+     +     + ++      G    S 
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 28/162 (17%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDD------RAFRGVTNMDE 108
            +V  L                  +  +  L + + +L ++D         F  +TN+  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISS-------------------YSFQST 149
             L    +  V    Y    + + L +    Q  +                   +S    
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 150 PGIRYIDMSNCQIHTIY--SEAFYGIDKIDTLKLNGNKLASL 189
           P + ++D+S   +      S++ +G   +  L L+ N + ++
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.5 bits (238), Expect = 3e-23
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 28/169 (16%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
            P            T +C+D+    +P+ I   T+ +DLS N + +L+   F     + +
Sbjct: 5   NPCIEVVP----NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNF--SEL 58

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
           Q L L +C++E ++D+A+ G+ +                      L ++ L  NPI   S
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHH----------------------LSNLILTGNPIQSFS 96

Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
             SF     +  +     ++ ++ S     +  +  L +  N + S K 
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 5e-19
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  N  +    IFL +  T++  L +      +      F   TN+  LDLS   
Sbjct: 427 LYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 116 LSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
           L  +   +   +  L+ +N++HN +  + S  +     +  +D S  +I T      +  
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 174 DKIDTLKLNGNKL 186
             +    L  N +
Sbjct: 545 KSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 10/144 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I       F  +  T+++ L   + KL  ++      +  + +L+++ N +
Sbjct: 83  SNLILTGNPIQSFSPGSFSGL--TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQS----TPGIRYIDMSNCQIHTIYSEA 169
            +     Y      L  ++L++N I  I+    Q           +DMS   I  I  +A
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
           F GI K+  L L GN  +S   +T
Sbjct: 201 FQGI-KLHELTLRGNFNSSNIMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q LD   + +  + +       +  +  L +     +   D  F G+T+++ L ++ N  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
                         L  ++L+   + QIS   F +   ++ ++MS+  +  + S  +  +
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 174 DKIDTLKLNGNKLASLKPRT 193
             + TL  + N++ + K   
Sbjct: 521 YSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 7/143 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
           + LDLS N   ++       MG+  +Q L  +   L+ V +  AF  +  +  LD+S   
Sbjct: 379 RHLDLSFNGAIIMSANF---MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
                    + +  L ++ +A N       S  F +T  + ++D+S CQ+  I    F  
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 173 IDKIDTLKLNGNKLASLKPRTWS 195
           + ++  L ++ N L  L    ++
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYN 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 6e-18
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 10/138 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             + L+  +I  L+            Q L + +C+L+         +  +  L L+ N  
Sbjct: 288 SAMSLAGVSIKYLEDVPKH----FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG 340

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ--STPGIRYIDMSNCQIHTIYSEAFYGID 174
           S     + +P L  ++L+ N +      S+    T  +R++D+S      + S  F G++
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399

Query: 175 KIDTLKLNGNKLASLKPR 192
           ++  L    + L  +   
Sbjct: 400 ELQHLDFQHSTLKRVTEF 417

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L ++ N+              TN+  L L KC+LE +    F  +  +  L++S N L
Sbjct: 451 NTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 117 STVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
             + S  Y  +  L +++ + N I             + + +++N  +  I
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 11/146 (7%)

Query: 56  TQVLDLSSN------NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL 109
             V  L         N+ + +  I   +    I +  L        D   F  + N+  +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
            L+   +  +  +      +S+++      Q+  +     P ++ + ++  +    +   
Sbjct: 291 SLAGVSIKYLEDVPKHFKWQSLSIIRC---QLKQFPTLDLPFLKSLTLTMNKGSISFK-- 345

Query: 170 FYGIDKIDTLKLNGNKLASLKPRTWS 195
              +  +  L L+ N L+     ++S
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
               D  LS VP  I     K+I+L+ NP+  + SYSF +   ++++D+S C+I TI  +
Sbjct: 16  YQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 169 AFYGIDKIDTLKLNGNKLASLKPRT 193
           A++G+  +  L L GN + S  P +
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPGS 99

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 14/148 (9%)

Query: 57  QVLDLSSNNINVLQKEIF--LQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
             +DLS N I  +       L+        L +    ++F+ D+AF+G   + EL L  N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGN 214

Query: 115 LLSTVP---SLIYIPYLKSINLAHN------PIHQISSYSFQSTPGIRY--IDMSNCQIH 163
             S+      L  +  L    L          +        +    +      ++     
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           +     F+ +  +  + L G  +  L+ 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLED 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 14/111 (12%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q+L++S NN+  L    + Q+   ++  L     ++E           ++   +L++N +
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQL--YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPG-----IRYIDMSNCQI 162
           + +       +L+ +      +  +   +  +        +   + S C +
Sbjct: 558 ACICEH--QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCYM 606

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.7 bits (233), Expect = 1e-22
 Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
                  +NI    +  F  +  ++++ L L    +  ++ R F  + ++  L+L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 117 STVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
           + +   +   +  L+ +NL++N + ++ S +F   P + YID+    I  I  + F  ++
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 175 KIDTLKLNGNKLASL 189
           K+ TL L  N L ++
Sbjct: 363 KLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 6e-21
 Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 35/199 (17%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM--------- 77
           CS       R       N   +P+ ++  T+ L LS N I  +    F  +         
Sbjct: 2   CSFD----GRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 78  --------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--- 120
                          + N++ L L   K+ F+   AF+G+ ++ EL L    LS      
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 121 -SLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID- 177
                +  L  ++L+ N I  +    SF     ++ ID S+ QI  +       +     
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 178 -TLKLNGNKLASLKPRTWS 195
               L  N L S     W 
Sbjct: 177 SFFSLAANSLYSRVSVDWG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.6 bits (217), Expect = 1e-20
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 53  DLDTQVLDLSSNNINVLQKEIFLQ----------MGITNIQKLYLRKCKLEFVDDRAFRG 102
           ++  ++LD+S N   V     F            +   +I         ++  D   F G
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 103 V--TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
           +  +++  LDLS   + ++ S +   +  LK +NLA+N I++I+  +F     ++ +++S
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
              +  +YS  FYG+ K+  + L  N +A ++ +T+ 
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.9 bits (192), Expect = 3e-17
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 21/154 (13%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           QVL+LS N +  L    F   G+  +  + L+K  +  + D+ F+ +  +  LDL DN L
Sbjct: 317 QVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 117 STVPSLIYIPYL-----------------KSINLAHNPIHQISSYSF-QSTPGIRYIDMS 158
           +T+  +  IP +                   I+L+ N +  +    F    P ++ + ++
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 159 NCQIHTIYSEA-FYGIDKIDTLKLNGNKLASLKP 191
             +  +   +        ++ L L  N L     
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 22/161 (13%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN------MDELD 110
           + +D SSN I ++ +     +    +    L    L       +    N      ++ LD
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 111 LSDNLLSTVP--------------SLIYIPYLKSINLAHNPIHQISSYSFQS--TPGIRY 154
           +S N  +                 SLI   ++       + I      +F       +R+
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
           +D+S+  + ++ S  F  +  +  L L  NK+  +    + 
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.7 bits (181), Expect = 9e-16
 Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA-FRG 102
           N       I+L   ++ LS N +  L    FL   + ++Q L L + +            
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 103 VTNMDELDLSDNLLSTVP-------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
             ++++L L +N+L               + +L+ + L HN ++ +    F     +R +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
            +++ ++  +          ++ L ++ N+L +  P  + 
Sbjct: 510 SLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 7e-14
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 57  QVLDLSSNNINVLQ-----KEIFL-QMGITNIQK-------LYLRKCKLEFVDDRAF-RG 102
           Q LDL  N +  +       +IFL    +  + K       ++L + +LE +D   F   
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 103 VTNMDELDLSDNLLSTVPS---LIYIPYLKSINLAHNPIH-----QISSYSFQSTPGIRY 154
           V ++  L L+ N  S+          P L+ + L  N +      ++    F+    ++ 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
           + +++  ++++    F  +  +  L LN N+L  L      
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQ---MGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD 113
           + L L  N + +  +         G++++Q LYL    L  +    F  +T +  L L+ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQS 148
           N L+ +        L+ ++++ N +   +   F S
Sbjct: 514 NRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS 548

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 9e-22
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 26/165 (15%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C         T +C++ NFY IP+ +   T+ LDLS N +  L    F       +Q L 
Sbjct: 3   CVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLD 58

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSF 146
           L +C+++ ++D A++ +++                      L ++ L  NPI  ++  +F
Sbjct: 59  LSRCEIQTIEDGAYQSLSH----------------------LSTLILTGNPIQSLALGAF 96

Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
                ++ +      + ++ +     +  +  L +  N + S K 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 6e-21
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 36  RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
           + +E ++  F   P       + L  +SN       E+ L     +++ L L +  L F 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFK 362

Query: 96  D--DRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYS-FQSTPG 151
               ++  G T++  LDLS N + T+ S    +  L+ ++  H+ + Q+S +S F S   
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 152 IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192
           + Y+D+S+      ++  F G+  ++ LK+ GN        
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNL 115
           + LDLS N +  +        G+  ++ L  +   L+ + +   F  + N+  LD+S   
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 116 LSTVPS--LIYIPYLKSINLAHNPIHQ-ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
                +     +  L+ + +A N   +      F     + ++D+S CQ+  +   AF  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 173 IDKIDTLKLNGNKLASLKP 191
           +  +  L +  N+L S+  
Sbjct: 493 LSSLQVLNMASNQLKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I  L    F   G++++QKL   +  L  +++     +  + EL+++ NL+
Sbjct: 79  STLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRY----IDMSNCQIHTIYSEA 169
            +         +  L+ ++L+ N I  I     +    +      +D+S   ++ I   A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
           F  I ++  L L  N  +    +T
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)

Query: 47  TIPEGIDLDT-QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
                +DL + + LDLS N ++          G T+++ L L    +  +    F G+  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQ 397

Query: 106 MDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQI 162
           ++ LD   + L  +           L  ++++H       +  F     +  + M+    
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 163 H-TIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
                 + F  +  +  L L+  +L  L P  ++
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 20/133 (15%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LD   +N+  + +       + N+  L +         +  F G+++++ L ++ N  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 117 STVPS---LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
                      +  L  ++L+   + Q+S  +F S   ++ ++M++ Q+ ++    F  +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 174 DKIDTLKLNGNKL 186
             +  + L+ N  
Sbjct: 518 TSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           +     L S  I  ++   +        Q L L  CK         +   ++  L  + N
Sbjct: 283 NVSSFSLVSVTIERVKDFSYN----FGWQHLELVNCKFGQFPTLKLK---SLKRLTFTSN 335

Query: 115 LLSTVPSLIYIPYLKSINLAHNPIHQIS--SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
                 S + +P L+ ++L+ N +      S S   T  ++Y+D+S   + T+ S  F G
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394

Query: 173 IDKIDTLKLNGNKLASL 189
           +++++ L    + L  +
Sbjct: 395 LEQLEHLDFQHSNLKQM 411

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELDLSDNL 115
             LD+S  +  V    IF  +  ++++ L +      E      F  + N+  LDLS   
Sbjct: 424 IYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 116 LSTVP--SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
           L  +   +   +  L+ +N+A N +  +    F     ++ I +      
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 110 DLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
              +     +P  +     K+++L+ NP+  + SYSF S P ++ +D+S C+I TI   A
Sbjct: 13  QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
           +  +  + TL L GN + SL    
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGA 95

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 15/149 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQ--KLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
           + LDLSSN I  +       +    +    L L    + F+   AF+    + +L L +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNN 210

Query: 115 LLSTVPS---LIYIPYLKSINLA------HNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
             S       +  +  L+   L          + +    + +    +   +     +   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 166 YSE---AFYGIDKIDTLKLNGNKLASLKP 191
             +    F  +  + +  L    +  +K 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS   +  L    F    ++++Q L +   +L+ V D  F  +T++ ++ L  N  
Sbjct: 473 TFLDLSQCQLEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 117 STVPSLI 123
                 I
Sbjct: 531 DCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 47  TIPEGI--DLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRK----CKLEFVDDRA 99
            I  G   ++    L L +N  ++ + K     +    + +L L +      LE  D  A
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-----IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
             G+ N+   +     L      I      +  + S +L    I ++  +S+    G ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQH 308

Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           +++ NC+     +     + ++       NK  + 
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNA 340

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 1e-20
 Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 5/149 (3%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTN 105
            +        + + L++N I +L+         + +Q L L+  +++ V+          
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
           ++ L+L  N +  V   +    LK+++L+ N +  +    FQS  G+ +I + N ++  I
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229

Query: 166 YSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
             +A      ++   L GN       R +
Sbjct: 230 -EKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 9e-20
 Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 18/153 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++  ++ +++      +       N+++L L    L  +        T ++ L+LS N+L
Sbjct: 13  KIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 117 STVPSLIYIPYLKSINLAHNPIH----------------QISSYSFQSTPGIRYIDMSNC 160
                L  +  L++++L +N +                  IS  S     G + I ++N 
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130

Query: 161 QIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           +I  +         ++  L L  N++ ++    
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
            +  G  +  + L  ++NNI+ +             + +YL   K+  + D      + +
Sbjct: 94  ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
             LDL  N + TV           L+ +NL +N I+ +          ++ +D+S+ ++ 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
            +    F     +  + L  NKL  +
Sbjct: 205 FM-GPEFQSAAGVTWISLRNNKLVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L+L  N I  ++ ++        ++ L L   KL F+    F+    +  + L +N L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF----AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKL 226

Query: 117 STVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
             +  +L +   L+  +L  N  H  +         +R     N ++ T+  +    +  
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 176 IDTLKLNGNKLASLK 190
            +  +     L    
Sbjct: 278 QNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 71  KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
            EI         +   +    L+       +   N+ ELDLS N LS +    L     L
Sbjct: 3   HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           + +NL+ N +++      +S   +R +D++N  +  +          I+TL    N ++ 
Sbjct: 61  ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR 113

Query: 189 LKPRTWS 195
           +      
Sbjct: 114 VSCSRGQ 120

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 13/178 (7%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
               CS           CI+R  + +PE +      +DLS N+I  L +  F    + ++
Sbjct: 4   GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56

Query: 83  QKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIH 139
           Q L + +      + +  FRG++++  L L  N    + +  +  +  L+ + L    + 
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 140 --QISSYSFQSTPGIRYIDMSNCQIHTIYSE-AFYGIDKIDTLKLNGNKLASLKPRTW 194
              +S   F+    +  + + +  I  I     F  + +   L L  NK+ S+     
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 33/132 (25%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN 114
             +  DLS + I  L K +F     T++++L L + ++  +DD AF G+T++ +L+LS N
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 115 LLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
            L ++ S ++  +  L+ ++L++N I  +   SF   P ++ + +   Q+ ++    F  
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 173 IDKIDTLKLNGN 184
           +  +  + L+ N
Sbjct: 394 LTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 60  DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
                N        F  +  + ++   L K K+  +    F   T++++L L+ N ++ +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 120 PSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID 177
               +  + +L  +NL+ N +  I S  F++   +  +D+S   I  +  ++F G+  + 
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 178 TLKLNGNKLASL 189
            L L+ N+L S+
Sbjct: 375 ELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 15/152 (9%)

Query: 57  QVLDLSSNNINVLQKEIF-----------LQMGITNIQKLYLRKCKLEFVDDRAFRG--V 103
             LDLS N       + F           L +  +            +  D+  F+G   
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 104 TNMDELDLSDNLLSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
           + +   DLS + +  +   +  +   L+ + LA N I++I   +F     +  +++S   
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 162 IHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
           + +I S  F  +DK++ L L+ N + +L  ++
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 49/186 (26%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYL--------RKCKLEFVDDRAFRGVTNMDE 108
            VLDL+ N +  + +E  L     +   L L         +  L +         T++  
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 109 LDLSDNLLSTVPSLIY-----------------------------------------IPY 127
           LDLS N      +  +                                            
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 128 LKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA 187
           +K+ +L+ + I  +    F     +  + ++  +I+ I   AF+G+  +  L L+ N L 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 188 SLKPRT 193
           S+  R 
Sbjct: 337 SIDSRM 342

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+LS N +  +   +F    +  ++ L L    +  + D++F G+ N+ EL L  N L
Sbjct: 326 LKLNLSQNFLGSIDSRMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 117 STVPSLIY--IPYLKSINLAHNPIH 139
            +VP  I+  +  L+ I L  NP  
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWD 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 4e-20
 Identities = 26/155 (16%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 35  KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF 94
           +  V+        +P+ +   T +L++S N I+ L     L   ++ ++ L +   ++++
Sbjct: 2   EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQY 59

Query: 95  VDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIR 153
           +D   F+    ++ LDLS N L  +        LK ++L+ N    +     F +   ++
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISC-HPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 154 YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           ++ +S   +          ++    L + G     
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 21/131 (16%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 55  DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSD 113
           + + L L  N +  L K   +   + ++Q+L + +  + + +         ++  L++S 
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
           N+L+        P +K ++L  N I  I     +    ++ +++++ Q+ ++    F  +
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIFDRL 467

Query: 174 DKIDTLKLNGN 184
             +  + L+ N
Sbjct: 468 TSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 58  VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
           +  + S+     Q  I+     +N+            V       ++    LD S+NLL+
Sbjct: 280 IHQVVSDVFGFPQSYIYEIF--SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 118 TVPSLIY--IPYLKSINLAHNPIHQISSYS--FQSTPGIRYIDMSNCQI-HTIYSEAFYG 172
                    +  L+++ L  N + ++S  +        ++ +D+S   + +         
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 173 IDKIDTLKLNGNKLASL 189
              + +L ++ N L   
Sbjct: 398 TKSLLSLNMSSNILTDT 414

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 14/140 (10%), Positives = 47/140 (33%), Gaps = 7/140 (5%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKC---KLEFVDDRAFRGVTNMDELDLSDNL 115
             +S+  +             T+++ L + +       F     +   +NM+  + + + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 116 LSTVPSLI--YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI--YSEAFY 171
              V  L    I     ++ ++N +      +      +  + +   Q+  +   +E   
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 172 GIDKIDTLKLNGNKLASLKP 191
            +  +  L ++ N ++  + 
Sbjct: 372 QMKSLQQLDISQNSVSYDEK 391

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 10/165 (6%)

Query: 39  ECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK---EIFLQMGITNIQKLYLRKCKLEFV 95
           +     F +I   +  + ++ +L+ NNI         I   +  T +    +   KL+  
Sbjct: 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262

Query: 96  D-----DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQS 148
                 D +   +  +    +  ++     S IY     +   N   +    +       
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 149 TPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
                ++D SN  +     E    + +++TL L  N+L  L    
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           +D S N L  VP  +       +N++ N I ++ +    S   +R + +S+ +I  +   
Sbjct: 5   VDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 169 AFYGIDKIDTLKLNGNKLASL 189
            F    +++ L L+ NKL  +
Sbjct: 64  VFKFNQELEYLDLSHNKLVKI 84

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 48  IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           I   +    +VLDL SN I  + K++     +  +Q+L +   +L+ V D  F  +T++ 
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 108 ELDLSDN 114
           ++ L  N
Sbjct: 472 KIWLHTN 478

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 85.2 bits (210), Expect = 4e-20
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQV--LDLSSNN-INVLQKEIFLQMGI 79
           CP  C      G   + C           +     +  L + +   +  L+      +  
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-- 55

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPI 138
             ++ L + K  L FV   AF     +  L+LS N L ++    +    L+ + L+ NP+
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

Query: 139 H 139
           H
Sbjct: 116 H 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 3e-12
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
             D  L ++  L     L  + + +   +  +     +    +R + +    +  +  +A
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 170 FYGIDKIDTLKLNGNKLASLKPRT 193
           F+   ++  L L+ N L SL  +T
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKT 99

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.0 bits (208), Expect = 7e-20
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 31/171 (18%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           C +            V C  RN   +P  +  DT +L LS N +                
Sbjct: 4   CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA---------- 49

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS 142
                                T + +L+L    L+ +     +P L +++L+HN +  + 
Sbjct: 50  ----------------TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
               Q+ P +  +D+S  ++ ++   A  G+ ++  L L GN+L +L P  
Sbjct: 94  L-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q L L  N +  L   +        ++KL L    L  +      G+ N+D L L +N L
Sbjct: 127 QELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 117 STVPSLIY-IPYLKSINLAHNP 137
            T+P   +    L    L  NP
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGNP 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG-VTNMDELDLSDNL 115
           + + L++N I +L+         + +Q L L+  +++ V+          ++ L+L  N 
Sbjct: 123 KNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
           +  V   +    LK+++L+ N +  +    FQS  G+ +I + N ++  I  +A      
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQN 238

Query: 176 IDTLKLNGNKLASLKPRTW 194
           ++   L GN       R +
Sbjct: 239 LEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 4e-19
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
            ++  ++ +++      +       N+++L L    L  +        T ++ L+LS N+
Sbjct: 12  YKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 116 LSTVPSLIYIPYLKSINLAHNPIH----------------QISSYSFQSTPGIRYIDMSN 159
           L     L  +  L++++L +N +                  IS  S     G + I ++N
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 160 CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
            +I  +         ++  L L  N++ ++    
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.3 bits (198), Expect = 4e-18
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 13/146 (8%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
            +  G  +  + L  ++NNI+ +             + +YL   K+  + D      + +
Sbjct: 94  ELLVGPSI--ETLHAANNNISRVSCSRG-----QGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 107 DELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
             LDL  N + TV           L+ +NL +N I+ +          ++ +D+S+ ++ 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
            +    F     +  + L  NKL  +
Sbjct: 205 FM-GPEFQSAAGVTWISLRNNKLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 71  KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP--SLIYIPYL 128
            EI         +   +    L+       +   N+ ELDLS N LS +    L     L
Sbjct: 3   HEIKQNG--NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           + +NL+ N +++      +S   +R +D++N  +  +          I+TL    N ++ 
Sbjct: 61  ELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR 113

Query: 189 LKPRTWS 195
           +      
Sbjct: 114 VSCSRGQ 120

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 16/156 (10%), Positives = 38/156 (24%), Gaps = 13/156 (8%)

Query: 47  TIPEGIDLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
            I + +      +  DL  N  +      F       +Q +  +   ++ +  +     T
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQT--VKKLTGQNEEECT 284

Query: 105 NMDELDLSDNLLSTVPS-------LIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM 157
                         +P+        +       ++   +   ++           R ID 
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-QREIDA 343

Query: 158 SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT 193
              Q  T+  +         TL+     L       
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 7e-19
 Identities = 32/192 (16%), Positives = 76/192 (39%), Gaps = 10/192 (5%)

Query: 5   FILSVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSN 64
            + S   +  LA +  +  P   S +    +  V+  +RN   +P+ +   T+ L LS N
Sbjct: 8   IVGSFHFVCALALIVGSMTP--FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQN 62

Query: 65  NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY 124
           +I+ L+        ++ ++ L L   ++  +D   F    +++ LD+S N L  +     
Sbjct: 63  SISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP- 119

Query: 125 IPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGID-KIDTLKLN 182
           +  L+ ++L+ N    +     F +   + ++ +S  +   +       +      L L 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 183 GNKLASLKPRTW 194
              +   +  + 
Sbjct: 180 SYHIKGGETESL 191

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 19/154 (12%), Positives = 53/154 (34%), Gaps = 14/154 (9%)

Query: 45  FYTIPEGI---DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR 101
           F    E +     +  +  LS ++   +          ++   L   +        +   
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSVFQGCS 374

Query: 102 GVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPIHQISSYSF----QSTPGIRYID 156
            +  +  L L  N L     +  +   + S+      ++ ++S+++         I  ++
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 157 MSNCQIHTIYSEAFYGI-DKIDTLKLNGNKLASL 189
           +S+  +       F  +  K+  L L+ N++ S+
Sbjct: 435 LSSNMLT---GSVFRCLPPKVKVLDLHNNRIMSI 465

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 17/157 (10%), Positives = 48/157 (30%), Gaps = 10/157 (6%)

Query: 45  FYTIPEGIDLDTQVLDLSSNNINVLQK---EIFLQMGITNIQKLYLRKCKLEFVDDRAF- 100
             T    +     +L+++  +I    K   ++F       ++ L +    +    DR   
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 101 ----RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRY 154
                 + ++    + + +       +Y     +    L+ +    I      S     +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           ++ +         +    + ++ TL L  N L +   
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 56  TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
             VL+LSSN    L   +F  +    ++ L L   ++  +       +  + EL+++ N 
Sbjct: 430 ILVLNLSSNM---LTGSVFRCLP-PKVKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQ 484

Query: 116 LSTVP--SLIYIPYLKSINLAHNP 137
           L +VP      +  L+ I L  NP
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNP 508

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           C     C    GK+ V+C  ++  ++P GI  DT+ LDL S  +  L    F   G+T +
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATF--RGLTKL 61

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
             L L   +L+ +    F  +T +  L L++N L+++P  ++  +  L  + L  N +  
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
           + S  F     ++ + ++  Q+ +I + AF  +  + TL L+ N+L S
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 37  TVECIDRNFYTIPEGI-DLDT--QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE 93
           T+   +    ++P G+ D  T    L L  N +  L   +F    +T +++L L   +L+
Sbjct: 87  TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQLQ 144

Query: 94  FVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            +   AF  +TN+  L LS N L +VP   +  +  L++I L  N 
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 9/148 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGI-------TNIQKLYLRKCKL-EFVDDRAFRGVTNMDE 108
           Q L+++ N      +       +         IQ  Y+    L EF    + + +  +  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           LD   N +  + +      L  + L +N I +I       T  +  +  S+ ++  I + 
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637

Query: 169 AFYG-IDKIDTLKLNGNKLASLKPRTWS 195
                +  + ++  + NK+ S       
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISC 665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA 99
           N    P    L       +LD   N +  L  E F       +  L L   ++E + +  
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTN--VKLTDLKLDYNQIEEIPEDF 614

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPGIR--- 153
                 ++ L  S N L  +P++        + S++ ++N I         S    +   
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 154 --YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
              + +S  +I    +E F     I T+ L+ N + S+
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 1e-15
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 18/162 (11%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGI---TNIQKLYLRKCKLEFVD 96
               IP   +  +      +D S N I    + I   M      N   + L   +++   
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 97  DRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPIHQIS-SYSF 146
              F   + +  + LS+NL++++P         +      L +I+L  N +  +S  +  
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 147 QSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS 188
            + P +  +D+S     +  ++      ++    +   + A 
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAE 790

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 14/139 (10%)

Query: 47  TIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----- 97
           ++ +     T      +D+S N  +    +       + ++   +R  +    +      
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 98  -RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID 156
                   ++ +L +  N +  V   +  P L  +++A NP   I   S           
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857

Query: 157 MSNCQIHTIYSEAFYGIDK 175
           +   +   I      GI++
Sbjct: 858 LLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 9/140 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL   +++  V  +    +    ++ +    + ++ +           ++  DL  + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLLQDAI 408

Query: 117 STVPSLIYIPYLKSINLAH-------NPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
           +  P +  I     I+L         N I  IS  + Q    ++ I  +N          
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAV 467

Query: 170 FYGIDKIDTLKLNGNKLASL 189
            +     D  K   N+  S 
Sbjct: 468 DWEDANSDYAKQYENEELSW 487

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 16/141 (11%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD------DRAFRGVTNMDELD 110
            + DL  + IN   +   ++       ++ L+  ++  +        +A + +T +  + 
Sbjct: 399 NLSDLLQDAINRNPEMKPIK----KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 111 LSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF 170
            +++  +     +     +  N  +   ++    S+ +   +  +++ NC   T   +  
Sbjct: 455 FANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 171 YGIDKIDTLKLNGNKLASLKP 191
           Y + ++ +L +  N+  S   
Sbjct: 512 YDLPELQSLNIACNRGISAAQ 532

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 13/146 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+         +   Q+  T ++ L                     D  +   + +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQL--TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 117 STVPSLIYIPYLKSINL---------AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
                 +++ Y + +NL          +  +  I   S  S    +  +++N +I  I S
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFI-S 441

Query: 168 EAFYGIDKIDTLKLNGNKLASLKPRT 193
           +A   + K+  +    +         
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAV 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            +L+   N +               +  L L   ++  +          ++ L  + N L
Sbjct: 333 GMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQSTPG-------IRYIDMSNCQIHTIY 166
             +P++        + +I+ ++N I  +   +F            +  I++SN QI    
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
            E F     + ++ L GN L  +
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEI 472

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 24/167 (14%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKLEF 94
               IP   D  +      +D S N I  +  + F  +        N+  + L   ++  
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 95  VDDRAFRGVTNMDELDLSDNLLSTVP---------SLIYIPYLKSINLAHNPIHQI-SSY 144
                F   + +  ++L  N+L+ +P         +      L SI+L  N + ++   +
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

Query: 145 SFQSTPGIRYIDMSNCQIHTIYSEAF-----YGIDKIDTLKLNGNKL 186
              + P +  ID+S        ++        G    +     GN+ 
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGIT------NIQKLYLRKCKL-EFVDDRAFRGVTNMDEL 109
           Q+++++ N     ++       +        IQ +Y+    L  F  + + + +  +  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 110 DLSDNLLSTV-PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           +   N L    P+      L S+NLA+N I +I +     T  +  +  ++ ++  I + 
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 169 AFYG-IDKIDTLKLNGNKLASLKPRTWS 195
                +  +  +  + N++ S+  + + 
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 16/148 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQM-----GITNIQKLYLRKCKL-EFVDDRAFRGVTNMDELD 110
             ++L  N +  + K               +  + LR  KL +  DD     +  +  +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 111 LSDNLLSTVP-------SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
           LS N  S  P       +L         +   N   +         P +  + + +  I 
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
            +  +       I  L +  N   S+  
Sbjct: 580 KVNEKIT---PNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 14/142 (9%)

Query: 44  NFYTIPEGIDLDT----QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC------KLE 93
               + +     T      +DLS N+ +    +       + ++   +R        +  
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL---NSSTLKGFGIRNQRDAQGNRTL 555

Query: 94  FVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIR 153
                      ++ +L +  N +  V   I  P +  +++  NP   I            
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKIT-PNISVLDIKDNPNISIDLSYVCPYIEAG 614

Query: 154 YIDMSNCQIHTIYSEAFYGIDK 175
              +   +   I       I +
Sbjct: 615 MYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 33/171 (19%)

Query: 51  GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE----------------- 93
            I L    +   SNNI  + K +     +T +++ Y+                       
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVM---RLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 94  --FVDDRAFRGVTNMDELDLSD-NLLSTVPSLIY-IPYLKSINLAHNPIHQISSY----- 144
               +D  +  + ++ ++++ +   L+ +P+ +  +P ++ IN+A N             
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 145 ---SFQSTPGIRYIDMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASLKP 191
                     I+ I +    + T     +   + K+  L+   N+L    P
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 9/135 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL L S+   V ++    + GI+       ++                 D  DL  + +
Sbjct: 108 EVLALGSHGEKVNERLFGPK-GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 117 STVPSLIYIP-------YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEA 169
           ++ P    I            I    N I  +S  +      +R   M N          
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICE 225

Query: 170 FYGIDKIDTLKLNGN 184
            +  +  +  +    
Sbjct: 226 AWENENSEYAQQYKT 240

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 35/143 (24%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQM---- 77
           CP  C C+      TV+C  R    IP  I L T  L L+ N +  +  + +F ++    
Sbjct: 2   CPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57

Query: 78  ------------------GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV 119
                             G ++IQ+L L + K++ + ++ F G+  +  L+L DN +S V
Sbjct: 58  KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

Query: 120 P-----SLIYIPYLKSINLAHNP 137
                  L     L S+NLA NP
Sbjct: 118 MPGSFEHL---NSLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 116 LSTVPSLIYIP-YLKSINLAHNPIHQISSY-SFQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
           L  +P    IP +   + L  N + +ISS   F   P +  +++   Q+  I   AF G 
Sbjct: 20  LKEIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 174 DKIDTLKLNGNKLASL 189
             I  L+L  NK+  +
Sbjct: 78  SHIQELQLGENKIKEI 93

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.3 bits (168), Expect = 5e-14
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
                  N I  +     +   +T +  L +   K+  +       ++ +  L++  N +
Sbjct: 202 HYFTAYVNQITDI---TPVA-NMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S + ++  +  LK +N+  N I  IS     +   +  + ++N Q+     E   G+  +
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 177 DTLKLNGNKLASLKP 191
            TL L+ N +  ++P
Sbjct: 314 TTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 22/137 (16%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N I  +     L   +T++        ++  +       +T ++ L + +N +
Sbjct: 180 YSLSLNYNQIEDI---SPLA-SLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKI 233

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  L  +  L  + +  N I  I+  + +    ++ +++ + QI  I       + ++
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289

Query: 177 DTLKLNGNKLASLKPRT 193
           ++L LN N+L +     
Sbjct: 290 NSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L + +N I  L     L   ++ +  L +   ++  ++  A + +T +  L++  N +
Sbjct: 224 NSLKIGNNKITDL---SPLA-NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQI 277

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L  +  L S+ L +N +             +  + +S   I  I       + K+
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKM 335

Query: 177 DTLKLNGNKL 186
           D+       +
Sbjct: 336 DSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+L +N+       +     +T +  L + + K++ V       +T++  L L+ N +
Sbjct: 135 YSLNLGANHNLSDLSPLS---NMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             +  L  +  L       N I  I+     +   +  + + N +I  +       + ++
Sbjct: 190 EDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDL--SPLANLSQL 245

Query: 177 DTLKLNGNKLASLKP 191
             L++  N+++ +  
Sbjct: 246 TWLEIGTNQISDINA 260

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               L   ++     ++  Q  + +I KL +   K+  +       +TN++ L+L+ N +
Sbjct: 25  IRAVLQKASV----TDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQI 78

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  L  +  L ++ +  N I  IS  + Q+   +R + ++   I  I       + K+
Sbjct: 79  TDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDI--SPLANLTKM 134

Query: 177 DTLKLNGNKLASL 189
            +L L  N   S 
Sbjct: 135 YSLNLGANHNLSD 147

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L + +N I  +       +  TN+++LYL +  +  +       +T M  L+L  N  
Sbjct: 91  TNLYIGTNKITDI--SALQNL--TNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHN 144

Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
            +  S +  +  L  + +  + +  ++     +   +  + ++  QI  I       +  
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDI--SPLASLTS 200

Query: 176 IDTLKLNGNKLASLKP 191
           +       N++  + P
Sbjct: 201 LHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 6e-07
 Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
                  L    ++ V +   +  +  + +A   +  I     +    + Y++++  QI 
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT 79

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
            I       + K+  L +  NK+  +  
Sbjct: 80  DI--SPLSNLVKLTNLYIGTNKITDISA 105

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 1e-13
 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N +     +I     + N+  L+L + K++  D  + + +  +  L L  N +
Sbjct: 68  TKLFLNGNKL----TDIKPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGI 121

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L+++P L+S+ L +N I  I+         +  + + + QI  I      G+ K+
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VPLAGLTKL 177

Query: 177 DTLKLNGNKLASLKP 191
             L L+ N ++ L+ 
Sbjct: 178 QNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 3e-12
 Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
               S  I    K+IF         K  L+K  +   D      + ++D++  +++ + +
Sbjct: 4   TITVSTPI----KQIFPDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKS 57

Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
           V  + Y+P +  + L  N +  I      +   + ++ +   +I  +   +   + K+ +
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113

Query: 179 LKLNGNKLASLKP 191
           L L  N ++ +  
Sbjct: 114 LSLEHNGISDING 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 7e-12
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +  ++++I  +Q    +Q  + N+ KL+L   KL  +       + N+  L L +N +
Sbjct: 46  DQIIANNSDIKSVQ---GIQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             + SL  +  LKS++L HN I  I+       P +  + + N +I  I       + K+
Sbjct: 100 KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKL 155

Query: 177 DTLKLNGNKLASLKP 191
           DTL L  N+++ + P
Sbjct: 156 DTLSLEDNQISDIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L +N I  +     L   +T +  L L   ++   D     G+T +  L LS N +
Sbjct: 134 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQIS--DIVPLAGLTKLQNLYLSKNHI 187

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQ---STPGIRYIDMSNCQIHTIYSEAFYGI 173
           S + +L  +  L  + L                     ++  D S      I  +  Y  
Sbjct: 188 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247

Query: 174 DKI 176
             +
Sbjct: 248 PNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
           M E       +  +            NL    +      +      I  I  +N  I ++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV 58

Query: 166 YSEAFYGIDKIDTLKLNGNKLASLKP 191
             +    +  +  L LNGNKL  +KP
Sbjct: 59  --QGIQYLPNVTKLFLNGNKLTDIKP 82

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
           T+P+ +      L +  NN+  L            ++ L +   +L  +      G+  +
Sbjct: 54  TLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLPV-LPPGLLEL 106

Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
                    L  +PS      L  + +  N +  +        PG++ + +S+ Q+ ++ 
Sbjct: 107 SIFSNPLTHLPALPS-----GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP 157

Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
           +       ++  L    N+L SL
Sbjct: 158 AL----PSELCKLWAYNNQLTSL 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 21/146 (14%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
              ++P       Q L +S N +  L          + + KL+    +L  +        
Sbjct: 132 QLTSLPVLPP-GLQELSVSDNQLASLPALP------SELCKLWAYNNQLTSLPM----LP 180

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
           + + EL +SDN L+++P+L     L  +   +N +  + +       G++ + +S  ++ 
Sbjct: 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT 234

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
           ++         ++  L ++GN+L SL
Sbjct: 235 SLPVL----PSELKELMVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 16/120 (13%)

Query: 47  TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN 105
           ++P    +L    L   +N +  L          + +++L +   +L  +        + 
Sbjct: 195 SLPTLPSEL--YKLWAYNNRLTSLPALP------SGLKELIVSGNRLTSLPV----LPSE 242

Query: 106 MDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + EL +S N L+++P L     L S+++  N + ++   S         +++    +   
Sbjct: 243 LKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 12/86 (13%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
                L++ ++ L+T+P  +   ++ ++ +  N +  + +      P +R +++S  Q+ 
Sbjct: 40  NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT 94

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
           ++      G+ ++         L +L
Sbjct: 95  SL-PVLPPGLLELSIFSNPLTHLPAL 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L +S N +  L          + +  L + + +L  + + +   +++   ++L  N L
Sbjct: 244 KELMVSGNRLTSLPMLP------SGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPL 296

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
           S          + S      PI +       + 
Sbjct: 297 SERTLQAL-REITSAPGYSGPIIRFDMAGASAP 328

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 13/166 (7%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TV+C  +   ++P GI  + Q+L L  N I  L+  +F    + N+
Sbjct: 13  CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF--DSLINL 66

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
           ++LYL   +L  +    F  +T +  LDL  N L+ +PS ++  + +LK + +  N   +
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN---K 123

Query: 141 ISS--YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
           ++      +    + ++ +   Q+ +I   AF  +  +    L GN
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TVEC  +   ++P GI   T  LDL +N++  L   +F    +T++
Sbjct: 1   CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF--DELTSL 54

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ 140
            +LYL   KL+ + +  F  +T++  L+LS N L ++P+ ++  +  LK + L  N +  
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN 184
           +    F     ++ + +   Q+ ++    F  +  +  + L+ N
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L  ++N I+ +     L   +TN+ +L L   +L+ +       +TN+ +LDL++N +
Sbjct: 202 ESLIATNNQISDI---TPLG-ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 255

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L  +  L  + L  N I  IS         +  ++++  Q+  I       +  +
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNL 311

Query: 177 DTLKLNGNKLASLKP 191
             L L  N ++ + P
Sbjct: 312 TYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDL++N I+ L     L  G+T + +L L   ++  +      G+T +  L+L++N L
Sbjct: 246 TDLDLANNQISNL---APLS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQL 299

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             +  +  +  L  + L  N I  IS     S   ++ +   N ++  +   +   +  I
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355

Query: 177 DTLKLNGNKLASLKP 191
           + L    N+++ L P
Sbjct: 356 NWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
               L   N+     +   Q  +  +  L   +  ++ +D      + N+ +++ S+N L
Sbjct: 27  MKTVLGKTNV----TDTVSQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL 80

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  L  +  L  I + +N I  I+     +   +  + + N QI  I  +    +  +
Sbjct: 81  TDITPLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNL 136

Query: 177 DTLKLNGNKLASLKP 191
           + L+L+ N ++ +  
Sbjct: 137 NRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+LSSN I+ +     L    T++Q+L       +         +T ++ LD+S N +
Sbjct: 137 NRLELSSNTISDISALSGL----TSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKV 189

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L  +  L+S+   +N I  I+         +  + ++  Q+  I       +  +
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--GTLASLTNL 245

Query: 177 DTLKLNGNKLASLKP 191
             L L  N++++L P
Sbjct: 246 TDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+L+ N +  +       +   N+  L L    +  +       +T +  L   +N +
Sbjct: 290 TNLELNENQLEDI--SPISNL--KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S V SL  +  +  ++  HN I  ++     +   I  + +++             +   
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 177 DTLKLNGNKL 186
           +T+K     L
Sbjct: 402 NTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 24/135 (17%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             + +++N I  +     L   +TN+  L L   ++  +D    + +TN++ L+LS N +
Sbjct: 93  VDILMNNNQIADI---TPLA-NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTI 146

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S + +L  +  L+ ++   N +  +      +   +  +D+S+ ++  I       +  +
Sbjct: 147 SDISALSGLTSLQQLSF-GNQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNL 201

Query: 177 DTLKLNGNKLASLKP 191
           ++L    N+++ + P
Sbjct: 202 ESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                IN    +IF    +    K  L K  +   D  +   +  +  L      + ++ 
Sbjct: 9   TQDTPIN----QIFTDTALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSID 62

Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
            + Y+  L  IN ++N +  I+    ++   +  I M+N QI  I       +  +  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLT 118

Query: 181 LNGNKLASLKP 191
           L  N++  + P
Sbjct: 119 LFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 8/133 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  NNI+ +     +   +T +Q+L+    K+  V   +   +TN++ L    N +
Sbjct: 312 TYLTLYFNNISDI---SPVS-SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQI 365

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L  +  +  + L              +      +      +              
Sbjct: 366 SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP--ATISDGGSY 423

Query: 177 DTLKLNGNKLASL 189
               +  N  +  
Sbjct: 424 TEPDITWNLPSYT 436

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 63.0 bits (154), Expect = 6e-13
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC       TV+C  ++  ++P GI   TQVL L  N I  L+  +F ++  T +
Sbjct: 3   CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRL--TQL 56

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
            +L L   +L  +    F  +T + +L L+DN L ++P   +  +  L  I L +NP
Sbjct: 57  TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 63.0 bits (154), Expect = 6e-13
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 8/117 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC     +  V C +    ++P GI  D Q L L++N I  L+  +F  +   N+
Sbjct: 6   CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHL--VNL 59

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNP 137
           Q+LY    KL  +    F  +T + +LDL+DN L ++P   +  +  L  I L +NP
Sbjct: 60  QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  CSC        + C  +   ++P GI      L+L SN +  L   +F ++  T +
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQL 54

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS 121
            KL L + +++ + D  F  +T +  L L +N L ++P+
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +    +N+     +   Q  +  I  L      +  ++    + + N+  L+L DN +
Sbjct: 22  IKIAAGKSNVT----DTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI 75

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  L  +  +  + L+ NP+  +S  +      I+ +D+++ QI  +      G+  +
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNL 131

Query: 177 DTLKLNGNKLASLKP 191
             L L+ N++ ++ P
Sbjct: 132 QVLYLDLNQITNISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 22/135 (16%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+LS N +    K +    G+ +I+ L L   ++  V      G++N+  L L  N +
Sbjct: 88  TELELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQI 141

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  L  +  L+ +++ +  +  ++     +   +  +   + +I  I       +  +
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNL 197

Query: 177 DTLKLNGNKLASLKP 191
             + L  N+++ + P
Sbjct: 198 IEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 10/139 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           QVL L  N I  +        G+TN+Q L +   ++  +       ++ +  L   DN +
Sbjct: 132 QVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI 185

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L  +P L  ++L +N I  +S     +T  +  + ++N  I       FY  + +
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ--PVFYNNNLV 241

Query: 177 DTLKLNGNKLASLKPRTWS 195
               + G   A + P T S
Sbjct: 242 VPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 12/88 (13%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
            N  ++    + ++   +   +  + +++     +  I     Q    +  +++ + QI 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASLKP 191
            +       + KI  L+L+GN L ++  
Sbjct: 77  DL--APLKNLTKITELELSGNPLKNVSA 102

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 19/142 (13%)

Query: 48  IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           + E +      L L+  N++ L   +        I  L + +  L  + +       +++
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLP-----PQITVLEITQNALISLPEL----PASLE 103

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
            LD  DN LST+P L     LK +++ +N +  +          + YI+  N Q+  +  
Sbjct: 104 YLDACDNRLSTLPEL--PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE 157

Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
                   ++ L +  N+L  L
Sbjct: 158 L----PTSLEVLSVRNNQLTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 8e-11
 Identities = 24/143 (16%), Positives = 59/143 (41%), Gaps = 20/143 (13%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM 106
           ++P+ +     VL+++ N +  L +         +++ L     +L  + +       ++
Sbjct: 73  SLPDNLPPQITVLEITQNALISLPEL------PASLEYLDACDNRLSTLPEL----PASL 122

Query: 107 DELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
             LD+ +N L+ +P L     L+ IN  +N +  +          +  + + N Q+  + 
Sbjct: 123 KHLDVDNNQLTMLPEL--PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLP 176

Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
                  + ++ L ++ N L SL
Sbjct: 177 EL----PESLEALDVSTNLLESL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 30/133 (22%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + ++  +N + +L +        T+++ L +R  +L F+ +       +++ LD+S NLL
Sbjct: 143 EYINADNNQLTMLPELP------TSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLL 192

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
            ++P++     +++ +                     +      +I  I  E    +D  
Sbjct: 193 ESLPAVP----VRNHHS---------------EETEIFFRCRENRITHI-PENILSLDPT 232

Query: 177 DTLKLNGNKLASL 189
            T+ L  N L+S 
Sbjct: 233 CTIILEDNPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 10/115 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV---TNMDELDLSD 113
           +VL + +N +  L +         +++ L +    LE +     R              +
Sbjct: 163 EVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRE 216

Query: 114 NLLSTVP-SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
           N ++ +P +++ +    +I L  NP+      S                      
Sbjct: 217 NRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L+ N +     +I     + N+  L+L + K++ +   + + +  +  L L  N +
Sbjct: 71  TKLFLNGNKL----TDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI 124

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L+++P L+S+ L +N I  I+         +  + + + QI  I      G+ K+
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VPLAGLTKL 180

Query: 177 DTLKLNGNKLASLKP 191
             L L+ N ++ L+ 
Sbjct: 181 QNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                I     +IF         K  L+K  +   D      + ++D++  +++ + +V 
Sbjct: 9   TVPTPIK----QIFSDDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
            + Y+P +  + L  N +  I      +   + ++ +   ++  +   +   + K+ +L 
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118

Query: 181 LNGNKLASLKP 191
           L  N ++ +  
Sbjct: 119 LEHNGISDING 129

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +  ++++I  +Q    +Q  + N+ KL+L   KL  +       + N+  L L +N +
Sbjct: 49  DQIIANNSDIKSVQ---GIQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             + SL  +  LKS++L HN I  I+       P +  + + N +I  I       + K+
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKL 158

Query: 177 DTLKLNGNKLASLKP 191
           DTL L  N+++ + P
Sbjct: 159 DTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L +N I  +     L   +T +  L L   ++  +      G+T +  L LS N +
Sbjct: 137 ESLYLGNNKITDIT---VLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S + +L  +  L  + L              +      +  ++  + T    +  G  + 
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250

Query: 177 DTLKLNGNKLASLK 190
             +K +  +  +  
Sbjct: 251 PNVKWHLPEFTNEV 264

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVL--------------------- 59
           + CP  C+C        V C ++    +P+GI  D   L                     
Sbjct: 2   SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57

Query: 60  --DLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
             DLS+N I+ L  + F  M  T +  L L   +L  +  R F G+ ++  L L  N +S
Sbjct: 58  LIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

Query: 118 TVP 120
            VP
Sbjct: 116 VVP 118

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 7e-11
 Identities = 22/134 (16%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 58  VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
           ++ L++  I    +           ++L LR  K+  +++     +   D +D SDN + 
Sbjct: 1   MVKLTAELIEQAAQYTNA----VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR 55

Query: 118 TVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKI 176
            +     +  LK++ + +N I +I     Q+ P +  + ++N  +  +   +    +  +
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 177 DTLKLNGNKLASLK 190
             L +  N + + K
Sbjct: 116 TYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +D S N I  L     L      ++ L +   ++  + +   + + ++ EL L++N L
Sbjct: 45  DAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
             +  L  +     L  + +  NP+     Y        P +R +D
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 13/138 (9%)

Query: 57  QVLDLSSNNINVLQ--KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD---ELDL 111
             LDLS N     +        +    +Q L LR   +E                  LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 112 SDNLLSTVPSLI---YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           S N L          +   L S+NL+   + Q+          +  +D+S  ++    S 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSP 292

Query: 169 AFYGIDKIDTLKLNGNKL 186
                 ++  L L GN  
Sbjct: 293 DELP--QVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 47  TIPEGIDLDTQVLDLSSNNINVLQKEI--FLQMGITNIQKLYLRKCKLEFVDDRAFRGVT 104
            + E    D  +L+L + +       +    Q     ++ L + +           R   
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 105 NMDELDLSDNLLSTVPSLI------YIPYLKSINLAHNPIHQISSYSFQST---PGIRYI 155
            +  LDLSDN       LI        P L+ + L +  +   S            ++ +
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 156 DMSNCQIHTI-YSEAFYGIDKIDTLKLNGNKLASL 189
           D+S+  +     + +     ++++L L+   L  +
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 36  RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV 95
            T+          P+    +T   +L   ++     +      + +I ++      ++ V
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV 56

Query: 96  DDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYI 155
                + + N+  L L  N L  + +L  +  L  + L  N +  + +  F     ++ +
Sbjct: 57  Q--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR 192
            +   Q+ ++    F  +  +  L L  N+L SL   
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 33/193 (17%)

Query: 21  ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDL-----------------------DTQ 57
              P     +            ++        +L                       + +
Sbjct: 11  QIFPDDAFAE----TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVR 66

Query: 58  VLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS 117
            L L  N ++ +         +TN+  L L   +L+ + +  F  +TN+ EL L +N L 
Sbjct: 67  YLALGGNKLHDI--SAL--KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 118 TVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK 175
           ++P  ++  +  L  +NLAHN +  +    F     +  +D+S  Q+ ++    F  + +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182

Query: 176 IDTLKLNGNKLAS 188
           +  L+L  N+L S
Sbjct: 183 LKDLRLYQNQLKS 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 20/137 (14%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L +++ +         +  G++N+++L +    +         G+T++  LD+S +  
Sbjct: 69  KDLTINNIHATNYN---PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 117 S--TVPSLIYIPYLKSINLAHNPIHQISSYS-FQSTPGIRYIDMSNCQIHTIYSEAFYGI 173
               +  +  +P + SI+L++N    I+     ++ P ++ +++    +H          
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDF 180

Query: 174 DKIDTLKLNGNKLASLK 190
            K++ L      +   K
Sbjct: 181 PKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 11/128 (8%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 59  LDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST 118
             L  ++   + +       + ++  + L    +   D        N+ +L +++   + 
Sbjct: 28  GLLGQSSTANITEA-----QMNSLTYITLANINVT--DLTGIEYAHNIKDLTINNIHATN 80

Query: 119 VPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT 178
              +  +  L+ + +    +      +      +  +D+S+             + K+++
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 179 LKLNGNKL 186
           + L+ N  
Sbjct: 141 IDLSYNGA 148

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 3e-10
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 29  CKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
            K +     V  +     T+   ++  L    LDLS N +  L   +     +  ++ L 
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQ 492

Query: 87  LRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYI---PYLKSINLAHNPIHQISS 143
                LE VD      +  + EL L +N L    ++  +   P L  +NL  N + Q   
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

Query: 144 YS---FQSTPGIRYID 156
                 +  P +  I 
Sbjct: 551 IQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 5e-07
 Identities = 15/134 (11%), Positives = 43/134 (32%), Gaps = 5/134 (3%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L      +          +       L   + K    +        ++  L L+   L
Sbjct: 396 DPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  L  +  +  ++L+HN +  +   +  +   +  +  S+  +  +  +    + ++
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRL 510

Query: 177 DTLKLNGNKLASLK 190
             L L  N+L    
Sbjct: 511 QELLLCNNRLQQSA 524

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 7e-07
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 30  KWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRK 89
              A    +        ++ +    D +VL L+  ++ VL     L+  +  +  L L  
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQ-LLLVTHLDLSH 472

Query: 90  CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSY-SFQS 148
            +L  +   A   +  ++ L  SDN L  V  +  +P L+ + L +N + Q ++     S
Sbjct: 473 NRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 149 TPGIRYIDMSN 159
            P +  +++  
Sbjct: 532 CPRLVLLNLQG 542

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 19/142 (13%), Positives = 59/142 (41%), Gaps = 18/142 (12%)

Query: 48  IPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD 107
           + + +D     L+L++  ++ L +         +++ L      L  + +   + + ++ 
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-LPQSLKSLL 117

Query: 108 ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS 167
             + +   LS +P     P L+ + +++N + ++     Q++  ++ ID+ N  +  +  
Sbjct: 118 VDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL-- 168

Query: 168 EAFYGIDKIDTLKLNGNKLASL 189
                   ++ +    N+L  L
Sbjct: 169 --PDLPPSLEFIAAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 19/133 (14%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + +   +N +  L +   L      +  +Y     L+ + D       +++ +   +N+L
Sbjct: 176 EFIAAGNNQLEELPELQNL----PFLTAIYADNNSLKKLPD----LPLSLESIVAGNNIL 227

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             +P L  +P+L +I   +N +  +        P +  +++ +  +  +  E    +  +
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PELPQSLTFL 282

Query: 177 DTLKLNGNKLASL 189
           D  +   + L+ L
Sbjct: 283 DVSENIFSGLSEL 295

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 20/133 (15%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             +   +N +  L           +++ L +R   L  + +       ++  LD+S+N+ 
Sbjct: 240 TTIYADNNLLKTLPDLP------PSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIF 289

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L   P L  +N + N I  +        P +  +++SN ++  + +       ++
Sbjct: 290 SGLSEL--PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRL 339

Query: 177 DTLKLNGNKLASL 189
           + L  + N LA +
Sbjct: 340 ERLIASFNHLAEV 352

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 17/146 (11%)

Query: 44  NFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV 103
              ++PE      + L  S N++  L +       + ++         L  +        
Sbjct: 82  GLSSLPELPP-HLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDL-------P 130

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
             ++ L +S+N L  +P L    +LK I++ +N + ++        P + +I   N Q+ 
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE 186

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
            +       +  +  +  + N L  L
Sbjct: 187 ELPE--LQNLPFLTAIYADNNSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD+S N  + L +         N+  L     ++  + D       +++EL++S+N L
Sbjct: 280 TFLDVSENIFSGLSELP------PNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKL 329

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             +P+L   P L+ +  + N + ++          ++ + +    +           + +
Sbjct: 330 IELPAL--PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESV 379

Query: 177 DTLKLNGNKLASL 189
           + L++N + LA +
Sbjct: 380 EDLRMN-SHLAEV 391

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 31/150 (20%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+ SSN I  L           ++++L +   KL  +          ++ L  S N L
Sbjct: 300 YYLNASSNEIRSLCDLP------PSLEELNVSNNKLIELPA----LPPRLERLIASFNHL 349

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS--------------YSFQSTPG-IRYIDMSNCQ 161
           + VP L     LK +++ +NP+ +                       P  ++ + +    
Sbjct: 350 AEVPELP--QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 162 IHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
           +           + ++ L++N  ++     
Sbjct: 408 LREFPDI----PESVEDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 23/122 (18%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD---------------RAFR 101
           + L  S N++  + +         N+++L++    L    D                   
Sbjct: 340 ERLIASFNHLAEVPELP------QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ 161
              N+ +L +  N L   P +     ++ + +    +     ++ ++T  +      +  
Sbjct: 394 LPQNLKQLHVETNPLREFPDIP--ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 162 IH 163
            H
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 26/146 (17%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD--------- 107
           Q     S+N+  +  E      + +  + Y    + E            M          
Sbjct: 14  QEPLRHSSNLTEMPVEAE---NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 108 ----ELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
               EL+L++  LS++P L   P+L+S+  + N + ++     QS   +   + +   + 
Sbjct: 71  RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALS 127

Query: 164 TIYSEAFYGIDKIDTLKLNGNKLASL 189
            +          ++ L ++ N+L  L
Sbjct: 128 DL-------PPLLEYLGVSNNQLEKL 146

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L ++ N +  L            + +L+L   +L   D      + N++ L + +N L
Sbjct: 88  EELSVNRNRLKNLNGIPSA-----CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
            ++  L ++  L+ ++L  N I             + +ID++  +      +    +   
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 177 DTLKLNGNKL 186
           +T+K    + 
Sbjct: 199 NTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 25/135 (18%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           Q  +  ++NI  L     +Q   TN+++L+L   ++  +     + +T ++EL ++ N L
Sbjct: 44  QNFNGDNSNIQSLA---GMQ-FFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRL 97

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
             +  +     L  + L +N +      S      +  + + N ++ +I       + K+
Sbjct: 98  KNLNGI-PSACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VMLGFLSKL 152

Query: 177 DTLKLNGNKLASLKP 191
           + L L+GN++ +   
Sbjct: 153 EVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 61  LSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP 120
                IN    ++F   G+ N  K  L K  +   D  + + ++ +   +  ++ + ++ 
Sbjct: 4   QRPTPIN----QVFPDPGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLA 57

Query: 121 SLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK 180
            + +   LK ++L+HN I  +S    +    +  + ++  ++  +          +  L 
Sbjct: 58  GMQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLF 112

Query: 181 LNGNKLASLKP 191
           L+ N+L     
Sbjct: 113 LDNNELRDTDS 123

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L+  +N +  L            +  L   +  L  +D       T + ELD   N  
Sbjct: 109 TYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK 160

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
            T   +     L +++ + N   +I+         +  ++     I  +         ++
Sbjct: 161 ITKLDVTPQTQLTTLDCSFN---KITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQL 214

Query: 177 DTLKLNGNKLASL 189
             L  + NKL  +
Sbjct: 215 TFLDCSSNKLTEI 227

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 14/135 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
              D S N +  L          + +  L+  +  L  +D       T +          
Sbjct: 236 TYFDCSVNPLTELDVSTL-----SKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRK 287

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
                + +   L  ++        I+       P + Y+ ++N ++  +         K+
Sbjct: 288 IKELDVTHNTQLYLLDCQAA---GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKL 341

Query: 177 DTLKLNGNKLASLKP 191
            +L      +     
Sbjct: 342 KSLSCVNAHIQDFSS 356

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD S N I  L            + +L      +  +D         +  LD S N L
Sbjct: 173 TTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL 224

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI 165
           + +  +  +  L   + + N    ++     +   +  +      +  I
Sbjct: 225 TEID-VTPLTQLTYFDCSVN---PLTELDVSTLSKLTTLHCIQTDLLEI 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LD  +++I  +   I     +T + KL      +  +D       TN+  L    N L
Sbjct: 45  TSLDCHNSSITDM-TGIE---KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL 97

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +  +  +  L  +N   N   +++       P + Y++ +   +  I         ++
Sbjct: 98  TNLD-VTPLTKLTYLNCDTN---KLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQL 150

Query: 177 DTLKLNGNKLASLKP 191
             L  + NK  +   
Sbjct: 151 TELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 14/133 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L  +SNNI  L      Q   TN+  L     KL  +D      +T +  L+   N L
Sbjct: 67  TKLICTSNNITTLD---LSQN--TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           + +      P L  +N A N    ++         +  +D    +   I         ++
Sbjct: 119 TKLDVSQ-NPLLTYLNCARN---TLTEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQL 172

Query: 177 DTLKLNGNKLASL 189
            TL  + NK+  L
Sbjct: 173 TTLDCSFNKITEL 185

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 14/109 (12%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 81  NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQ 140
           N         +++  D  +   +  +  LD  ++ ++ +  +  +  L  +    N    
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN---N 75

Query: 141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL 189
           I++        + Y+   + ++  +       + K+  L  + NKL  L
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL 121

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
            +LD  +  I     E+ L      +  LYL   +L  +D       T +  L   +  +
Sbjct: 300 YLLDCQAAGI----TELDLS-QNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHI 351

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQST 149
               S+  IP L +   A      +   +  + 
Sbjct: 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNN 384

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
            N++ L L +  L +V +L  +P LK + L+ N I        +  P + ++++S  ++ 
Sbjct: 49  VNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 164 TIYS-EAFYGIDKIDTLKLNGNKLASLK 190
            I + E    ++ + +L L   ++ +L 
Sbjct: 109 DISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L L +  +  +      ++    ++KL L + ++    D     + N+  L+LS N L
Sbjct: 52  EFLSLINVGLISV--SNLPKL--PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
             + +L  +     LKS++L +  +  ++ Y    F+  P + Y+D
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 23 CPLGCSCKWKAGKRTVECIDRN--FYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGIT 80
          CP  CSC        V+C  R   + ++P    +DT  L L+ NN+  L   +   +   
Sbjct: 2  CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDAL--P 55

Query: 81 NIQKLYLR 88
           ++  +L 
Sbjct: 56 ALRTAHLG 63

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL- 115
           + L   +  +  +      ++    ++KL L   ++    +       N+  L+LS N  
Sbjct: 45  EFLSTINVGLTSI--ANLPKL--NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 116 --LSTVPSLIYIPYLKSINLAHNPIHQISSYS---FQSTPGIRYID 156
             LST+  L  +  LKS++L +  +  ++ Y    F+  P + Y+D
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/112 (14%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 81  NIQKLYLRKCKLEFVDDRA-FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
           ++++L L   +               ++ L   +  L+++ +L  +  LK + L+ N + 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLK 190
                  +  P + ++++S  +I  + + E    ++ + +L L   ++ +L 
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 71  KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKS 130
           +++ L   I  I+K+           D     +     L LS N +  + SL  +  L+ 
Sbjct: 26  EKVELHGMIPPIEKM-----------DATLSTLKACKHLALSTNNIEKISSLSGMENLRI 74

Query: 131 INLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK 190
           ++L  N I +I +        +  + +S  QI ++       +  +  L ++ NK+ +  
Sbjct: 75  LSLGRNLIKKIENLD-AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWG 131

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 17/113 (15%), Positives = 47/113 (41%), Gaps = 18/113 (15%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           ++L L  N I  ++    L      +++L++   ++  +       + N+  L +S+N +
Sbjct: 73  RILSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127

Query: 117 STVPSLIYI---PYLKSINLAHNPIHQISSYSFQST----------PGIRYID 156
           +    +  +     L+ + LA NP++     +  ++          P ++ +D
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L LS+NNI  +     L  G+ N++ L L +  ++ +++        ++EL +S N +
Sbjct: 51  KHLALSTNNIEKIS---SLS-GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQI 105

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS 143
           +++  +  +  L+ + +++N I     
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGE 132

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 22/140 (15%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV------TNMDEL 109
           +VLDLS+N+I+        L  G   ++ L +   K+         G        N++ L
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--------GDVDVSRCVNLEFL 205

Query: 110 DLSDNLLS-TVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIH-TIY 166
           D+S N  S  +P L     L+ ++++ N +    S  +  +   ++ +++S+ Q    I 
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIP 264

Query: 167 SEAFYGIDKIDTLKLNGNKL 186
                    +  L L  NK 
Sbjct: 265 PLPLK---SLQYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE---FVDDRAFRGVTNMDELDLSD 113
           + L++SSN ++    ++   + + +++ L L    +     V      G   +  L +S 
Sbjct: 129 KFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 114 NLLSTVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG 172
           N +S    +     L+ ++++ N     I          ++++D+S  ++   +S A   
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 173 IDKIDTLKLNGNKL 186
             ++  L ++ N+ 
Sbjct: 246 CTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLE-FVDDRAFRGVTNMDELDLSDN 114
             LDLS N+    +          + ++ L L        +       +  +  LDLS N
Sbjct: 297 TGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 115 LLS-TVPSLIY--IPYLKSINLAHNPIH-QISSYSFQST-PGIRYIDMSNCQIH 163
             S  +P  +      L +++L+ N     I     Q+    ++ + + N    
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + LD+SSNN +     +      + +Q L +   KL     RA    T +  L++S N  
Sbjct: 203 EFLDVSSNNFSTGIPFLG---DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 117 S-TVPSLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID 174
              +P L  +  L+ ++LA N    +I  +   +   +  +D+S    +      F    
Sbjct: 260 VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 175 KIDTLKLNGNKL 186
            +++L L+ N  
Sbjct: 319 LLESLALSSNNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 57  QVLDLSSNNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL 115
             LDLSSNN +  +   +  Q     +Q+LYL+               + +  L LS N 
Sbjct: 371 LTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 116 LS-TVP-SLIYIPYLKSINLAHNPIH-QISSYSFQSTPGIRYIDMSNCQI 162
           LS T+P SL  +  L+ + L  N +  +I          +  + +    +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 14/143 (9%)

Query: 59  LDLSSNNINVLQK--EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             + +     L+   ++           L LR   L    D     ++++  + +    L
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL 116

Query: 117 STVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC-QIHTI--------Y 166
             +P  +     L+++ LA NP+  + + S  S   +R + +  C ++  +         
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 167 SEAFYGIDKIDTLKLNGNKLASL 189
           S    G+  + +L+L    + SL
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLE--------FVDDRAFRGVTNMD 107
           + L L+ N +  L   I     +  +++L +R C +L                +G+ N+ 
Sbjct: 130 ETLTLARNPLRALPASIA---SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 108 ELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY 166
            L L    + ++P+ I  +  LKS+ + ++P+  +   +    P +  +D+  C     Y
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNY 245

Query: 167 SEAFYGIDKIDTLKL-NGNKLASL 189
              F G   +  L L + + L +L
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTL 269

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 47  TIPEGI-DLDTQVLDLSSNNINVLQKEIFLQMG-ITNIQKLYLRKCKLEFVDDRAFRGVT 104
            IP    +L+   +DLS N    L+ +  +  G   N QK++L K  L F D        
Sbjct: 189 KIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLSK 244

Query: 105 NMDELDLSDNLLS-TVP-SLIYIPYLKSINLAHN 136
           N++ LDL +N +  T+P  L  + +L S+N++ N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.97
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.96
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.95
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.61
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.46
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.84
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.06
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.41

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.97  E-value=1.5e-29  Score=183.40  Aligned_cols=163  Identities=21%  Similarity=0.431  Sum_probs=153.9

Q ss_pred             cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767         19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR   98 (195)
Q Consensus        19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~   98 (195)
                      ++.+||..|.|.    ...++|++++++.+|..++++++.|++++|.|+.+++..|.  ++++|+.|++++|.++.+.+.
T Consensus         1 ~~~~CP~~C~C~----~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B            1 GSLHCPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             CCCCSCTTSEEE----TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCCCEEC----CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHH
Confidence            357899999998    47899999999999999999999999999999999998887  789999999999999999999


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI  176 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l  176 (195)
                      +|.++++|+.|++++|.++.++...+  +++|+.|++++|+++.+++..|..+++|++|++++|+++++++..+..+++|
T Consensus        75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  154 (220)
T 2v9t_B           75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI  154 (220)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence            99999999999999999999999876  8999999999999999999899999999999999999999998889999999


Q ss_pred             cEEEcCCCCCC
Q psy14767        177 DTLKLNGNKLA  187 (195)
Q Consensus       177 ~~l~l~~n~l~  187 (195)
                      +.|++++|++.
T Consensus       155 ~~L~L~~N~~~  165 (220)
T 2v9t_B          155 QTMHLAQNPFI  165 (220)
T ss_dssp             CEEECCSSCEE
T ss_pred             CEEEeCCCCcC
Confidence            99999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=177.63  Aligned_cols=163  Identities=28%  Similarity=0.500  Sum_probs=150.0

Q ss_pred             CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccch-hhhhccCCCCccEEEeecCCcceeccc
Q psy14767         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK-EIFLQMGITNIQKLYLRKCKLEFVDDR   98 (195)
Q Consensus        20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~~   98 (195)
                      ..+||..|.|.+    +.++|+++.++.+|..++..++.|++++|.++.+++ ..|.  .+++|+.|++++|.++.+++.
T Consensus         2 ~~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~   75 (220)
T 2v70_A            2 SLACPEKCRCEG----TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEG   75 (220)
T ss_dssp             --CCCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCCEECC----CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHH
Confidence            468999999994    689999999999999999999999999999998854 5566  789999999999999999998


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI  176 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l  176 (195)
                      +|.++++|+.|++++|.++.++...+  +++|+.|++++|.++.+.+..|..+++|++|++++|+++++.+..+..+++|
T Consensus        76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  155 (220)
T 2v70_A           76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL  155 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC
T ss_pred             HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC
Confidence            99999999999999999999988766  8999999999999999988899999999999999999999988899999999


Q ss_pred             cEEEcCCCCCCC
Q psy14767        177 DTLKLNGNKLAS  188 (195)
Q Consensus       177 ~~l~l~~n~l~~  188 (195)
                      +.|++++|+++.
T Consensus       156 ~~L~L~~N~l~c  167 (220)
T 2v70_A          156 STLNLLANPFNC  167 (220)
T ss_dssp             CEEECCSCCEEC
T ss_pred             CEEEecCcCCcC
Confidence            999999999864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.95  E-value=1.1e-27  Score=176.65  Aligned_cols=170  Identities=26%  Similarity=0.511  Sum_probs=154.4

Q ss_pred             CCCCCC--CeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767         21 ASCPLG--CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR   98 (195)
Q Consensus        21 ~~c~~~--c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~   98 (195)
                      .+||..  |.|..  +.+.++|+++.++.+|.++++.++.|++++|.++.+.+..+.  ++++|++|++++|.++.+.+.
T Consensus         2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~   77 (251)
T 3m19_A            2 KTCETVTGCTCNE--GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAG   77 (251)
T ss_dssp             --CHHHHSSEEEG--GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTT
T ss_pred             ccCCCCCceEcCC--CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHh
Confidence            368875  99963  247899999999999999999999999999999999998887  789999999999999999998


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI  176 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l  176 (195)
                      .|..+++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..|..+++|++|++++|+++++++..+..+++|
T Consensus        78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            89999999999999999999887776  8899999999999999998888899999999999999999988889999999


Q ss_pred             cEEEcCCCCCCCCCCCCC
Q psy14767        177 DTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       177 ~~l~l~~n~l~~~~~~~~  194 (195)
                      +.|++++|+++++++..|
T Consensus       158 ~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             CEEECCSSCCSCCCTTTT
T ss_pred             CEEECCCCcCCccCHHHH
Confidence            999999999999998765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.95  E-value=2.5e-27  Score=183.44  Aligned_cols=171  Identities=29%  Similarity=0.457  Sum_probs=154.8

Q ss_pred             hccCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec
Q psy14767         17 SVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD   96 (195)
Q Consensus        17 ~~~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~   96 (195)
                      ..+..+||..|.|.    .+.++|++++++.+|..++..++.|++++|.++.+++..+.. ++++|+.|++++|.|+.++
T Consensus         6 ~~~~~~Cp~~C~C~----~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~   80 (361)
T 2xot_A            6 GRSVVSCPANCLCA----SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFIS   80 (361)
T ss_dssp             -CCCTTCCTTCEEE----TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCCCCCCCEEC----CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccC
Confidence            45567899999998    468999999999999999999999999999999998887631 4789999999999999999


Q ss_pred             ccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccc---c
Q psy14767         97 DRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF---Y  171 (195)
Q Consensus        97 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~  171 (195)
                      +.+|.++++|+.|++++|+++.++...+  +++|+.|++++|.++.+.+..|..+++|+.|++++|++++++...+   .
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  160 (361)
T 2xot_A           81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN  160 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred             hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence            9999999999999999999999988776  8999999999999999998899999999999999999999988777   5


Q ss_pred             CCCCCcEEEcCCCCCCCCCCC
Q psy14767        172 GIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       172 ~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      .+++|+.|++++|++++++++
T Consensus       161 ~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          161 KLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             -CTTCCEEECCSSCCCCCCHH
T ss_pred             cCCcCCEEECCCCCCCccCHH
Confidence            689999999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.95  E-value=5.8e-27  Score=168.19  Aligned_cols=163  Identities=26%  Similarity=0.498  Sum_probs=151.5

Q ss_pred             CCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCC
Q psy14767         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG  102 (195)
Q Consensus        23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~  102 (195)
                      ||..|.|.|    ..++|.+++++.+|.+++++++.|++++|.++.+++..+.  .+++|++|++++|.++.+++..|..
T Consensus         1 Cp~~C~C~~----~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A            1 CPSRCSCSG----TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEECC----CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence            899999984    7899999999999999999999999999999999988887  7899999999999999998888999


Q ss_pred             CCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEE
Q psy14767        103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLK  180 (195)
Q Consensus       103 l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~  180 (195)
                      +++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|+
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            9999999999999999888765  88999999999999999988889999999999999999999888899999999999


Q ss_pred             cCCCCCCCCCC
Q psy14767        181 LNGNKLASLKP  191 (195)
Q Consensus       181 l~~n~l~~~~~  191 (195)
                      +++|++.+..+
T Consensus       155 l~~N~~~~~~~  165 (208)
T 2o6s_A          155 LHDNPWDCTCP  165 (208)
T ss_dssp             CCSCCBCCCTT
T ss_pred             ecCCCeecCCC
Confidence            99998876544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.6e-27  Score=176.34  Aligned_cols=170  Identities=25%  Similarity=0.494  Sum_probs=134.4

Q ss_pred             CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~  101 (195)
                      +||..|.|.... ...++|++.+++.+|.+++++++.|++++|.++.+++..+.  .+++|++|++++|.++.+.+.+|.
T Consensus         1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~   77 (285)
T 1ozn_A            1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT   77 (285)
T ss_dssp             CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcC
Confidence            599999998432 47899999999999999999999999999999999888776  788999999999999988888888


Q ss_pred             CCCCccEEEcCCCC-CCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767        102 GVTNMDELDLSDNL-LSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT  178 (195)
Q Consensus       102 ~l~~l~~l~l~~n~-l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  178 (195)
                      ++++|+.|++++|. ++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.
T Consensus        78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence            88888999998886 777755444  677777777777777776666666777777777777777666666666666777


Q ss_pred             EEcCCCCCCCCCCCCC
Q psy14767        179 LKLNGNKLASLKPRTW  194 (195)
Q Consensus       179 l~l~~n~l~~~~~~~~  194 (195)
                      |++++|+++++++..|
T Consensus       158 L~l~~n~l~~~~~~~~  173 (285)
T 1ozn_A          158 LFLHGNRISSVPERAF  173 (285)
T ss_dssp             EECCSSCCCEECTTTT
T ss_pred             EECCCCcccccCHHHh
Confidence            7777776666665443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=182.89  Aligned_cols=168  Identities=30%  Similarity=0.592  Sum_probs=139.9

Q ss_pred             cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767         19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR   98 (195)
Q Consensus        19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~   98 (195)
                      .+..||..|.|...  ...++|.+.+++.+|.+++++++.|++++|.++.+++..|.  ++++|+.|++++|.++.+++.
T Consensus        31 ~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~  106 (440)
T 3zyj_A           31 SAQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIG  106 (440)
T ss_dssp             --CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGG
T ss_pred             ccccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChh
Confidence            35689999999843  36899999999999999999999999999999999988887  789999999999999999999


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC-CcceeeccccccCCCC
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYGIDK  175 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~  175 (195)
                      +|.++++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..|..+++|+.|++++ |.++.+.+..+..+++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            99999999999999999999888766  88999999999999888877777777777777776 4456665556666666


Q ss_pred             CcEEEcCCCCCCCCC
Q psy14767        176 IDTLKLNGNKLASLK  190 (195)
Q Consensus       176 l~~l~l~~n~l~~~~  190 (195)
                      |+.|++++|.+++++
T Consensus       187 L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          187 LRYLNLAMCNLREIP  201 (440)
T ss_dssp             CCEEECTTSCCSSCC
T ss_pred             cCeecCCCCcCcccc
Confidence            666666666555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.9e-26  Score=183.30  Aligned_cols=167  Identities=29%  Similarity=0.557  Sum_probs=144.8

Q ss_pred             CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccc
Q psy14767         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (195)
Q Consensus        20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~   99 (195)
                      +..||..|.|...  ...++|.+.+++.+|.+++++++.|++++|.++.+.+..|.  .+++|+.|++++|.++.+.+.+
T Consensus        43 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~  118 (452)
T 3zyi_A           43 PQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGA  118 (452)
T ss_dssp             -CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTT
T ss_pred             cCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhh
Confidence            4689999999843  36899999999999999999999999999999999998887  8899999999999999999999


Q ss_pred             cCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC-CcceeeccccccCCCCC
Q psy14767        100 FRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN-CQIHTIYSEAFYGIDKI  176 (195)
Q Consensus       100 ~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~l  176 (195)
                      |.++++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..|..+++|+.|++++ |.+..+++..+..+++|
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L  198 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL  198 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence            9999999999999999999988766  88999999999999988887788888888888877 45667766667777777


Q ss_pred             cEEEcCCCCCCCCC
Q psy14767        177 DTLKLNGNKLASLK  190 (195)
Q Consensus       177 ~~l~l~~n~l~~~~  190 (195)
                      +.|++++|.+++++
T Consensus       199 ~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          199 KYLNLGMCNIKDMP  212 (452)
T ss_dssp             CEEECTTSCCSSCC
T ss_pred             CEEECCCCcccccc
Confidence            77777777766654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=3.8e-27  Score=193.54  Aligned_cols=170  Identities=20%  Similarity=0.400  Sum_probs=152.5

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      +.|...|.|...  ...++|++.+++++|.+++++++.|+|++|.|+.+++..|.  ++++|++|++++|.|+.+++++|
T Consensus        21 p~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           21 PESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             ----CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTT
T ss_pred             CCCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHh
Confidence            445567877743  46899999999999999999999999999999999999998  89999999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCc
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKID  177 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~  177 (195)
                      .++++|++|++++|+++.++...+  +++|++|++++|.++.+++..|+.+++|++|++++|.++++. +..++.+++|+
T Consensus        97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A           97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            999999999999999999998876  899999999999999999988999999999999999998764 56788999999


Q ss_pred             EEEcCCCCCCCCCCCCC
Q psy14767        178 TLKLNGNKLASLKPRTW  194 (195)
Q Consensus       178 ~l~l~~n~l~~~~~~~~  194 (195)
                      .|++++|+++++++..|
T Consensus       177 ~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             EEECCSSCCCEECGGGG
T ss_pred             hhcccCccccccccccc
Confidence            99999999998876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.1e-25  Score=167.77  Aligned_cols=167  Identities=25%  Similarity=0.485  Sum_probs=127.7

Q ss_pred             CCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCC
Q psy14767         24 PLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV  103 (195)
Q Consensus        24 ~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l  103 (195)
                      +..|.|..  ..+.++|+++.++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|.++.+++..|..+
T Consensus         9 ~~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A            9 GGVCSCNN--NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             TCSBEEET--TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCEeCC--CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence            35688873  347899999999999999999999999999999998887776  77889999999998888887777888


Q ss_pred             CCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEc
Q psy14767        104 TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL  181 (195)
Q Consensus       104 ~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l  181 (195)
                      ++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            888888888888887776654  667777777777777766666666666666666666666665555666666666666


Q ss_pred             CCCCCCCCCCCCC
Q psy14767        182 NGNKLASLKPRTW  194 (195)
Q Consensus       182 ~~n~l~~~~~~~~  194 (195)
                      ++|+++++++..|
T Consensus       165 ~~n~l~~~~~~~~  177 (270)
T 2o6q_A          165 YNNQLKRVPEGAF  177 (270)
T ss_dssp             CSSCCSCCCTTTT
T ss_pred             cCCcCcEeChhHh
Confidence            6666666655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.2e-26  Score=183.99  Aligned_cols=168  Identities=27%  Similarity=0.540  Sum_probs=152.3

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      .+||..|.|...  ...++|.+.+++.+|.+++++++.|++++|.++.+++..|.  .+++|++|++++|.++.+.+.+|
T Consensus         1 ~~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~   76 (477)
T 2id5_A            1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAF   76 (477)
T ss_dssp             CCCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT
T ss_pred             CcccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhh
Confidence            379999999842  36899999999999999999999999999999999988887  78999999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT  178 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  178 (195)
                      .++++|+.|++++|.++.++...+  +++|+.|++++|.++.+.+..+..+++|+.|++++|.++++.+..+..+++|+.
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            999999999999999999988766  889999999999999988888888999999999999999888888888888888


Q ss_pred             EEcCCCCCCCCCCC
Q psy14767        179 LKLNGNKLASLKPR  192 (195)
Q Consensus       179 l~l~~n~l~~~~~~  192 (195)
                      |++++|.++++++.
T Consensus       157 L~l~~n~l~~~~~~  170 (477)
T 2id5_A          157 LTLEKCNLTSIPTE  170 (477)
T ss_dssp             EEEESCCCSSCCHH
T ss_pred             EECCCCcCcccChh
Confidence            88888888877653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2e-26  Score=177.79  Aligned_cols=182  Identities=23%  Similarity=0.378  Sum_probs=149.4

Q ss_pred             HHHHHHHhhhccCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEe
Q psy14767          8 SVFLLTLLASVTQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYL   87 (195)
Q Consensus         8 ~~~~~~~~~~~~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l   87 (195)
                      +++.+++....++..|+..|.|.+.   ..++|+++.++.+|.+++++++.|++++|.++.+++..+.  ++++|+.|++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~C~~~---~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L   83 (353)
T 2z80_A            9 WVLGVIISLSKEESSNQASLSCDRN---GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVL   83 (353)
T ss_dssp             ------------------CCEECTT---SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEC
T ss_pred             hhhhheeeccCccCCCccCCCCCCC---eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cCCCCCEEEC
Confidence            3333343444556678999999963   4599999999999999999999999999999999988887  7899999999


Q ss_pred             ecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCC-cce
Q psy14767         88 RKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNC-QIH  163 (195)
Q Consensus        88 ~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~l~  163 (195)
                      ++|.++.+.+.+|.++++|+.|++++|.++.++...+  +++|+.|++++|.++.++. ..+..+++|++|++++| .++
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence            9999999998899999999999999999999887654  8899999999999999887 67889999999999999 588


Q ss_pred             eeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        164 TIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       164 ~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      ++.+..+..+++|+.|++++|+++++.+..|
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence            8888889999999999999999998877665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.93  E-value=4.2e-25  Score=160.83  Aligned_cols=162  Identities=27%  Similarity=0.486  Sum_probs=148.4

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      ......|.|.+    ..++|++++++.+|.+++++++.|++++|.++.+.+..|.  ++++|+.|++++|.++.+++..|
T Consensus        11 ~~~~~~~~Cs~----~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~   84 (229)
T 3e6j_A           11 AACPSQCSCSG----TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVF   84 (229)
T ss_dssp             CCCCTTCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCEEeC----CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhc
Confidence            34556899994    6799999999999999999999999999999999888887  78999999999999999998889


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT  178 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  178 (195)
                      ..+++|+.|++++|.++.++...+  +++|+.|++++|+++.++. .+..+++|++|++++|+++++++..+..+++|+.
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence            999999999999999999988776  8999999999999998865 5678899999999999999998888999999999


Q ss_pred             EEcCCCCCCCC
Q psy14767        179 LKLNGNKLASL  189 (195)
Q Consensus       179 l~l~~n~l~~~  189 (195)
                      |++++|++...
T Consensus       164 L~l~~N~~~c~  174 (229)
T 3e6j_A          164 AYLFGNPWDCE  174 (229)
T ss_dssp             EECTTSCBCTT
T ss_pred             EEeeCCCccCC
Confidence            99999998754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=1.1e-25  Score=164.74  Aligned_cols=166  Identities=19%  Similarity=0.379  Sum_probs=126.7

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-cceecccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRA   99 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-i~~~~~~~   99 (195)
                      +.||..|.|... ....++|.+  ++.+|. ++.+++.|++++|+++.+++..|.  ++++|+.|++++|. ++.+++.+
T Consensus         2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~   75 (239)
T 2xwt_C            2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS   75 (239)
T ss_dssp             -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred             CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence            579999999841 236788977  788888 778899999999999988887776  77889999999996 88888888


Q ss_pred             cCCCCCccEEEcCC-CCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCC---EEecCCC-cceeeccccccC
Q psy14767        100 FRGVTNMDELDLSD-NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR---YIDMSNC-QIHTIYSEAFYG  172 (195)
Q Consensus       100 ~~~l~~l~~l~l~~-n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~  172 (195)
                      |.++++|+.|++++ |.++.++...+  +++|+.|++++|.++.++.  +..+++|+   +|++++| .++++++..+..
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence            88888999999988 88888877665  7778888888877776653  55556665   6777776 666666666666


Q ss_pred             CCCCc-EEEcCCCCCCCCCCCCC
Q psy14767        173 IDKID-TLKLNGNKLASLKPRTW  194 (195)
Q Consensus       173 l~~l~-~l~l~~n~l~~~~~~~~  194 (195)
                      +++|+ .|++++|+++.+++..|
T Consensus       154 l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             TBSSEEEEECCSCCCCEECTTTT
T ss_pred             hhcceeEEEcCCCCCcccCHhhc
Confidence            66666 67776666666665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.8e-24  Score=162.72  Aligned_cols=164  Identities=21%  Similarity=0.334  Sum_probs=117.0

Q ss_pred             CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (195)
Q Consensus        26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~  105 (195)
                      .|.|..-.....++|.+++++.+|.++++.++.|++++|.++.+.+..+.  ++++|+.|++++|.++.+++.  ..+++
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCCc
Confidence            57776555578999999999999999999999999999999999888887  778888888888888877653  45666


Q ss_pred             ccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767        106 MDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       106 l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                      |+.|++++|.++.++.... +++|+.|++++|+++.+++..|..+++|++|++++|+++++++..+..+++|+.|++++|
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            6666666666666655433 556666666666666665555556666666666666666555555555555666666666


Q ss_pred             CCCCCCCCC
Q psy14767        185 KLASLKPRT  193 (195)
Q Consensus       185 ~l~~~~~~~  193 (195)
                      +++++++..
T Consensus       159 ~l~~l~~~~  167 (290)
T 1p9a_G          159 NLTELPAGL  167 (290)
T ss_dssp             CCSCCCTTT
T ss_pred             cCCccCHHH
Confidence            555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=5.2e-24  Score=159.00  Aligned_cols=164  Identities=21%  Similarity=0.431  Sum_probs=145.6

Q ss_pred             CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (195)
Q Consensus        26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~  105 (195)
                      .|.|...  ...++|.+..+..+|..++++++.|++++|.++.+++..+.  .+++|++|++++|.++.+++.+|..+++
T Consensus         2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (276)
T 2z62_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH   77 (276)
T ss_dssp             CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             CceeccC--CceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcC
Confidence            5777743  36799999999999999999999999999999999887777  7899999999999999999889999999


Q ss_pred             ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEcC
Q psy14767        106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKLN  182 (195)
Q Consensus       106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l~  182 (195)
                      |+.|++++|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|.++++. +..+..+++|+.|+++
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            9999999999998886655  889999999999999888877888999999999999998854 6778889999999999


Q ss_pred             CCCCCCCCCCC
Q psy14767        183 GNKLASLKPRT  193 (195)
Q Consensus       183 ~n~l~~~~~~~  193 (195)
                      +|+++++++..
T Consensus       158 ~N~l~~~~~~~  168 (276)
T 2z62_A          158 SNKIQSIYCTD  168 (276)
T ss_dssp             SSCCCEECGGG
T ss_pred             CCCCCcCCHHH
Confidence            99998877643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.6e-24  Score=164.02  Aligned_cols=166  Identities=22%  Similarity=0.470  Sum_probs=122.0

Q ss_pred             CCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec--ccc-
Q psy14767         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRA-   99 (195)
Q Consensus        23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~--~~~-   99 (195)
                      ||..|.|.+    +.++|++.+++.+|.+++++++.|++++|.++.+++..|.  .+++|+.|++++|.++.+.  +.. 
T Consensus         1 CP~~C~C~~----~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CcCCCeeCC----CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence            899999984    6899999999999999999999999999999999888776  6788888888888776542  222 


Q ss_pred             ----------------------cCCCCCccEEEcCCCCCCcccC-ccc--ccccCeeecCCCcccccCCCcCCCCCCCCE
Q psy14767        100 ----------------------FRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRY  154 (195)
Q Consensus       100 ----------------------~~~l~~l~~l~l~~n~l~~~~~-~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~  154 (195)
                                            +..+++|+.|++++|.++.++. ..+  +++|+.|++++|.++.+.+..+..+++|++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence                                  3344455555555555554443 222  566677777777766666666667777777


Q ss_pred             EecCCCccee-eccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        155 IDMSNCQIHT-IYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       155 L~l~~n~l~~-~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      |++++|.+++ ..+..+..+++|+.|++++|+++++++..|
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  195 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  195 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence            7777777765 445667777888888888888887766554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=1.5e-23  Score=160.21  Aligned_cols=167  Identities=23%  Similarity=0.472  Sum_probs=146.9

Q ss_pred             cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767         19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR   98 (195)
Q Consensus        19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~   98 (195)
                      ....||..|.|.    .+.++|++++++.+|..+++.++.|++++|.++.+++..+.  .+++|++|++++|.++.+.+.
T Consensus        21 ~~~~cp~~c~c~----l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~   94 (330)
T 1xku_A           21 MGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPG   94 (330)
T ss_dssp             -CCCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTT
T ss_pred             ccCCCCCCCcCC----CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHH
Confidence            346799999998    47899999999999999999999999999999999988887  789999999999999999888


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCccee--eccccccCCCCC
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKI  176 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~l  176 (195)
                      +|..+++|+.|++++|.++.++...+ ++|+.|++++|.++.+++..+..+++|+.|++++|.++.  +.+..+..+++|
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A           95 AFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             HhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            99999999999999999998877664 789999999999998887778888999999999998864  556678888888


Q ss_pred             cEEEcCCCCCCCCCCC
Q psy14767        177 DTLKLNGNKLASLKPR  192 (195)
Q Consensus       177 ~~l~l~~n~l~~~~~~  192 (195)
                      +.|++++|.+++++..
T Consensus       174 ~~L~l~~n~l~~l~~~  189 (330)
T 1xku_A          174 SYIRIADTNITTIPQG  189 (330)
T ss_dssp             CEEECCSSCCCSCCSS
T ss_pred             CEEECCCCccccCCcc
Confidence            8888888888877654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.91  E-value=9.9e-24  Score=149.77  Aligned_cols=137  Identities=20%  Similarity=0.417  Sum_probs=125.7

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      .+||..|.|.    ...++|++++++.+|.+++++++.|++++|.++.++ ..+.  ++++|+.|++++|.++.+++.+|
T Consensus         2 ~~CP~~C~C~----~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f   74 (193)
T 2wfh_A            2 SRCPTECTCL----DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSF   74 (193)
T ss_dssp             --CCTTCEEE----TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCEeC----CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHc
Confidence            5799999998    478999999999999999999999999999999888 4565  78999999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCccee
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT  164 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  164 (195)
                      .++++|+.|++++|+++.++...+  +++|+.|++++|.++.+++..|..+++|+.|++++|.+..
T Consensus        75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            999999999999999999988776  8999999999999999998889999999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=8.8e-24  Score=167.80  Aligned_cols=168  Identities=20%  Similarity=0.346  Sum_probs=144.5

Q ss_pred             CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcc-eeccc
Q psy14767         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLE-FVDDR   98 (195)
Q Consensus        20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~-~~~~~   98 (195)
                      |.+||..|.|.    ...++|.+.+++.+|. ++++++.|++++|.++.+.+..+.  .+++|++|++++|.+. .+++.
T Consensus         1 a~p~~~~c~~~----~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~   73 (455)
T 3v47_A            1 ADPGTSECSVI----GYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNN   73 (455)
T ss_dssp             ------CCEEE----TTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTT
T ss_pred             CCCccceeEEE----ccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECcc
Confidence            46799999998    5789999999999999 889999999999999999888887  7899999999999987 67788


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccc--cCCCcCCCCCCCCEEecCCCcceeecccc-ccCC
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ--ISSYSFQSTPGIRYIDMSNCQIHTIYSEA-FYGI  173 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l  173 (195)
                      +|.++++|++|++++|.++.++...+  +++|++|++++|.+++  .....+..+++|++|++++|+++++.+.. +..+
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            89999999999999999998766555  8999999999999986  33445888999999999999999986654 8899


Q ss_pred             CCCcEEEcCCCCCCCCCCCCC
Q psy14767        174 DKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       174 ~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      ++|+.|++++|+++++++..+
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l  174 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDL  174 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTS
T ss_pred             CcccEEeCCCCcccccChhhh
Confidence            999999999999999887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1.7e-23  Score=160.05  Aligned_cols=164  Identities=28%  Similarity=0.543  Sum_probs=140.7

Q ss_pred             CCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccc
Q psy14767         20 QASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (195)
Q Consensus        20 ~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~   99 (195)
                      ...||..|.|.    .+.++|+++.++.+|..+++.++.|++++|.++.+++..+.  .+++|++|++++|.++.+.+.+
T Consensus        24 ~~~cp~~c~c~----l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           24 SAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             -CCCCSSCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGG
T ss_pred             cCCCCCCCccc----CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhH
Confidence            46799999998    47899999999999999999999999999999999888887  7899999999999999998999


Q ss_pred             cCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCccee--eccccccCCCCCc
Q psy14767        100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT--IYSEAFYGIDKID  177 (195)
Q Consensus       100 ~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~l~  177 (195)
                      |.++++|+.|++++|.++.+|...+ ++|++|++++|.++.+++..+..+++|+.|++++|.++.  +.+..+..+ +|+
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             hhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            9999999999999999998887765 789999999999999988888899999999999999864  555556555 555


Q ss_pred             EEEcCCCCCCCCCC
Q psy14767        178 TLKLNGNKLASLKP  191 (195)
Q Consensus       178 ~l~l~~n~l~~~~~  191 (195)
                      .|++++|++++++.
T Consensus       176 ~L~l~~n~l~~l~~  189 (332)
T 2ft3_A          176 YLRISEAKLTGIPK  189 (332)
T ss_dssp             CCBCCSSBCSSCCS
T ss_pred             EEECcCCCCCccCc
Confidence            55555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=3.5e-24  Score=175.67  Aligned_cols=167  Identities=20%  Similarity=0.308  Sum_probs=132.8

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      ..|+..|.|...  ...++|.+.+++.+|..++..++.|++++|.++.+++..|.  ++++|++|++++|.++.+.+.+|
T Consensus         2 ~~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~   77 (606)
T 3t6q_A            2 TSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTF   77 (606)
T ss_dssp             ----CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTT
T ss_pred             ccccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhc
Confidence            468889999853  46899999999999999999999999999999999888887  78999999999999999988899


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcE
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDT  178 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~  178 (195)
                      .++++|++|++++|.++.+++..+  +++|++|++++|.++.+.+..+..+++|++|++++|+++++....+..+++|+.
T Consensus        78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV  157 (606)
T ss_dssp             TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred             cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence            999999999999999987765554  778888888888887776666777777777777777777654344444666666


Q ss_pred             EEcCCCCCCCCCC
Q psy14767        179 LKLNGNKLASLKP  191 (195)
Q Consensus       179 l~l~~n~l~~~~~  191 (195)
                      |++++|+++++++
T Consensus       158 L~L~~n~l~~~~~  170 (606)
T 3t6q_A          158 LDFQNNAIHYLSK  170 (606)
T ss_dssp             EECCSSCCCEECH
T ss_pred             EEcccCcccccCh
Confidence            6666666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.6e-23  Score=171.76  Aligned_cols=165  Identities=19%  Similarity=0.382  Sum_probs=149.7

Q ss_pred             CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (195)
Q Consensus        26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~  105 (195)
                      .|.|..  ....++|++.+++.+|..++++++.|++++|.++.+++..|.  ++++|++|++++|.++.+.+.+|.++++
T Consensus         6 ~c~~~~--~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~   81 (606)
T 3vq2_A            6 PCIEVV--PNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHH   81 (606)
T ss_dssp             CCEEEE--TTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CceecC--CCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhh
Confidence            477753  246899999999999999999999999999999999998887  8899999999999999999999999999


Q ss_pred             ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEcC
Q psy14767        106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKLN  182 (195)
Q Consensus       106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l~  182 (195)
                      |++|++++|.++.+++..+  +++|++|++++|.++.+++..+..+++|++|++++|.++++. +..++.+++|+.|+++
T Consensus        82 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A           82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             CCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             cCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            9999999999998866555  999999999999999999888999999999999999998743 7789999999999999


Q ss_pred             CCCCCCCCCCCC
Q psy14767        183 GNKLASLKPRTW  194 (195)
Q Consensus       183 ~n~l~~~~~~~~  194 (195)
                      +|.++++++..|
T Consensus       162 ~n~l~~~~~~~~  173 (606)
T 3vq2_A          162 YNYIQTITVNDL  173 (606)
T ss_dssp             SSCCCEECTTTT
T ss_pred             CCcceecChhhh
Confidence            999999887755

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.91  E-value=2.2e-23  Score=147.88  Aligned_cols=138  Identities=26%  Similarity=0.517  Sum_probs=126.7

Q ss_pred             CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchh-hhhccCCCCccEEEeecCCcceeccccc
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKE-IFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      +||..|.|.+    +.++|++++++.+|..++.+++.|++++|.++.+++. .+.  .+++|+.|++++|.++.+.+.+|
T Consensus         1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~   74 (192)
T 1w8a_A            1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence            5999999994    7899999999999999999999999999999998875 465  68899999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI  165 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  165 (195)
                      .++++|+.|++++|+++.++...+  +++|+.|++++|.++++.+..+..+++|++|++++|.+++.
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999999999999998888766  89999999999999999888899999999999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=2.5e-23  Score=160.33  Aligned_cols=166  Identities=20%  Similarity=0.381  Sum_probs=121.5

Q ss_pred             CCCCC-CeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCc-ceecccc
Q psy14767         22 SCPLG-CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL-EFVDDRA   99 (195)
Q Consensus        22 ~c~~~-c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i-~~~~~~~   99 (195)
                      +||.+ |.|.    .+.++|++++++++|.+++++++.|++++|+|+.+++..|.  ++++|++|++++|.+ +.+++++
T Consensus         1 gCp~~~C~C~----~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X            1 GCHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             -CCCSSSEEE----TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCCCCccEee----CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhH
Confidence            59875 9998    47899999999999999999999999999999999999988  889999999999997 4566778


Q ss_pred             cCCCCCccE-EEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCC-------------------------
Q psy14767        100 FRGVTNMDE-LDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPG-------------------------  151 (195)
Q Consensus       100 ~~~l~~l~~-l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~-------------------------  151 (195)
                      |.+++++.. +.+..|+++.++...+  +++|+.+++++|+++.+++..+....+                         
T Consensus        75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~  154 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  154 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence            888887765 5566788888877766  788888888888777665543333333                         


Q ss_pred             -CCEEecCCCcceeeccccccCCCCCcEEEcC-CCCCCCCCCCCC
Q psy14767        152 -IRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN-GNKLASLKPRTW  194 (195)
Q Consensus       152 -L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~-~n~l~~~~~~~~  194 (195)
                       ++.|++++|+++.+++.++.. .+++.+++. +|.++.+++++|
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTT
T ss_pred             hhhhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHh
Confidence             444555555555554443322 345555554 345555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.90  E-value=6.8e-23  Score=143.41  Aligned_cols=139  Identities=24%  Similarity=0.460  Sum_probs=126.4

Q ss_pred             CCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCC
Q psy14767         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG  102 (195)
Q Consensus        23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~  102 (195)
                      ||..|.|.+    +.++|.+++++.+|..++++++.|++++|.++.+++..+.  .+++|++|++++|.++.+++..|..
T Consensus         1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEeCC----CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence            899999984    7899999999999999999999999999999999988877  7899999999999999998888899


Q ss_pred             CCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecc
Q psy14767        103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS  167 (195)
Q Consensus       103 l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  167 (195)
                      +++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|.+.+..+
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999999999999998888765  8899999999999999988778888999999999999886543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=5.4e-23  Score=167.32  Aligned_cols=165  Identities=21%  Similarity=0.423  Sum_probs=148.0

Q ss_pred             CCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCC
Q psy14767         25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT  104 (195)
Q Consensus        25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~  104 (195)
                      +.|.|...  ...++|.+.+++++|..++++++.|++++|.++.+++..|.  ++++|+.|++++|.++.+++.+|.+++
T Consensus         1 ~~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~   76 (570)
T 2z63_A            1 EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS   76 (570)
T ss_dssp             CCSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CCccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCch
Confidence            36888743  47899999999999999999999999999999999988887  889999999999999999999999999


Q ss_pred             CccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEc
Q psy14767        105 NMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKL  181 (195)
Q Consensus       105 ~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l  181 (195)
                      +|+.|++++|.++.++...+  +++|++|++++|.++.+++..+..+++|++|++++|.++++. +..++.+++|+.|++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l  156 (570)
T 2z63_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (570)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence            99999999999998887666  899999999999999988877899999999999999998753 677899999999999


Q ss_pred             CCCCCCCCCCCC
Q psy14767        182 NGNKLASLKPRT  193 (195)
Q Consensus       182 ~~n~l~~~~~~~  193 (195)
                      ++|+++++++..
T Consensus       157 ~~n~l~~~~~~~  168 (570)
T 2z63_A          157 SSNKIQSIYCTD  168 (570)
T ss_dssp             TTSCCCEECGGG
T ss_pred             cCCccceecHHH
Confidence            999998876643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=3.1e-22  Score=148.97  Aligned_cols=158  Identities=21%  Similarity=0.409  Sum_probs=136.1

Q ss_pred             ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      .+.++.+++.+..+|.. +.  ++++.|++++|.++.+++..|.  .+++|++|++++|.++.+++..|..+++|+.|++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS--SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc--CCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            57788899988888763 32  6899999999999988888876  6789999999999999888888888999999999


Q ss_pred             CCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      ++|.++.++...+  +++|+.|++++|.++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|+++++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            9999998887765  88899999999999888887788889999999999999988888888888999999999999888


Q ss_pred             CCCCC
Q psy14767        190 KPRTW  194 (195)
Q Consensus       190 ~~~~~  194 (195)
                      ++..|
T Consensus       197 ~~~~~  201 (270)
T 2o6q_A          197 PEGAF  201 (270)
T ss_dssp             CTTTT
T ss_pred             CHHHh
Confidence            87655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=6e-23  Score=167.21  Aligned_cols=164  Identities=16%  Similarity=0.262  Sum_probs=137.4

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      ..++..|.|..   .+.++|++++++.+|..++++++.|++++|.++.+++..+.  ++++|++|++++|.++.+.+++|
T Consensus        22 ~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~   96 (562)
T 3a79_B           22 VGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVF   96 (562)
T ss_dssp             --------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTT
T ss_pred             hccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHh
Confidence            44555566662   47899999999999999999999999999999999988887  88999999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCC--c
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI--D  177 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l--~  177 (195)
                      .++++|++|++++|.++.+|.. .+++|++|++++|.++.++ +..+..+++|++|++++|++++..   +..++++  +
T Consensus        97 ~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~  172 (562)
T 3a79_B           97 LFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLS  172 (562)
T ss_dssp             TTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEE
T ss_pred             CCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceee
Confidence            9999999999999999999887 7889999999999999876 468889999999999999998743   4444555  9


Q ss_pred             EEEcCCCCC--CCCCCCC
Q psy14767        178 TLKLNGNKL--ASLKPRT  193 (195)
Q Consensus       178 ~l~l~~n~l--~~~~~~~  193 (195)
                      .|++++|++  ++..+..
T Consensus       173 ~L~L~~n~l~~~~~~~~~  190 (562)
T 3a79_B          173 CILLDLVSYHIKGGETES  190 (562)
T ss_dssp             EEEEEESSCCCCSSSCCE
T ss_pred             EEEeecccccccccCccc
Confidence            999999998  7766654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=5e-23  Score=170.94  Aligned_cols=161  Identities=18%  Similarity=0.339  Sum_probs=140.4

Q ss_pred             CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCC
Q psy14767         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTN  105 (195)
Q Consensus        26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~  105 (195)
                      .|.|.    ...++|++++++++|..++++++.|++++|.++.+++..|.  ++++|++|++++|.++.+.+.+|.++++
T Consensus         1 ~C~~~----~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   74 (680)
T 1ziw_A            1 KCTVS----HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM   74 (680)
T ss_dssp             ---CB----SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred             CceeE----CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence            36776    36899999999999999999999999999999999998887  7889999999999999998888999999


Q ss_pred             ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCC
Q psy14767        106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG  183 (195)
Q Consensus       106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~  183 (195)
                      |+.|++++|.++.++...+  +++|++|++++|.++.+++..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus        75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence            9999999999998888655  88999999999999888888888889999999999998888777788888888888888


Q ss_pred             CCCCCCCCC
Q psy14767        184 NKLASLKPR  192 (195)
Q Consensus       184 n~l~~~~~~  192 (195)
                      |.++++++.
T Consensus       155 n~l~~~~~~  163 (680)
T 1ziw_A          155 NKIQALKSE  163 (680)
T ss_dssp             SCCCCBCHH
T ss_pred             CcccccCHH
Confidence            888777653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=8.6e-22  Score=145.13  Aligned_cols=154  Identities=22%  Similarity=0.372  Sum_probs=141.6

Q ss_pred             CceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      ..+.++.+++.+..++... .  ++++.|++++|.++.+++..+.  .+++|+.|++++|.++.+++..|..+++|+.|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc--cCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            3578999999999887643 3  6899999999999999998887  789999999999999999998999999999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      +++|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|+++.
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            99999999988776  8999999999999999998889999999999999999999988889999999999999999976


Q ss_pred             C
Q psy14767        189 L  189 (195)
Q Consensus       189 ~  189 (195)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=3e-21  Score=144.66  Aligned_cols=157  Identities=20%  Similarity=0.339  Sum_probs=95.9

Q ss_pred             ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-cceecccccCCCCCccEEE
Q psy14767         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-i~~~~~~~~~~l~~l~~l~  110 (195)
                      .+.++.+++.++.+|....   ++++.|++++|.++.+.+..+.  ++++|++|++++|. ++.+.+..|..+++|+.|+
T Consensus        34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            4567777777777664322   4677777777777766666555  56667777777765 6666566666666666666


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      +++|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            66666665544433  5566666666666665555555555566666666666555555555555555555555555555


Q ss_pred             CCCCC
Q psy14767        189 LKPRT  193 (195)
Q Consensus       189 ~~~~~  193 (195)
                      +++..
T Consensus       192 ~~~~~  196 (285)
T 1ozn_A          192 VHPHA  196 (285)
T ss_dssp             ECTTT
T ss_pred             cCHhH
Confidence            54433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=6.6e-22  Score=152.49  Aligned_cols=185  Identities=16%  Similarity=0.287  Sum_probs=140.0

Q ss_pred             hhHHHHHHHHHHh---hhccCCCCCCCCeecccC------------CceEEEecCCCceeeCCC-CC--CceeEEEeecC
Q psy14767          3 HKFILSVFLLTLL---ASVTQASCPLGCSCKWKA------------GKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSN   64 (195)
Q Consensus         3 ~~~~~~~~~~~~~---~~~~~~~c~~~c~c~~~~------------~~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n   64 (195)
                      ..+++.+++....   ...+...||..|.|+...            ..+.++.+++.++.+|.. +.  ++++.|++++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n   86 (353)
T 2z80_A            7 MVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN   86 (353)
T ss_dssp             --------------------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             HHhhhhheeeccCccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC
Confidence            3445555543322   233456789888876421            346799999999999874 33  68999999999


Q ss_pred             CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccC-ccc--ccccCeeecCCC-cccc
Q psy14767         65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS-LIY--IPYLKSINLAHN-PIHQ  140 (195)
Q Consensus        65 ~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~-~~~--~~~l~~l~l~~n-~~~~  140 (195)
                      .++.+.+..+.  ++++|++|++++|.++.+++..|.++++|+.|++++|.++.++. ..+  +++|+.|++++| .++.
T Consensus        87 ~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A           87 GINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             CCCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             ccCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence            99999888887  78999999999999999988789999999999999999998887 444  889999999998 5888


Q ss_pred             cCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        141 ISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       141 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      +++..+..+++|++|++++|+++++.+..+..+++|+.|++++|+++.+
T Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  213 (353)
T 2z80_A          165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL  213 (353)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH
T ss_pred             cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc
Confidence            8777888889999999999999888777777777777776666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=9.9e-21  Score=141.03  Aligned_cols=152  Identities=19%  Similarity=0.315  Sum_probs=82.0

Q ss_pred             eEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767         36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n  114 (195)
                      +.++.+++.+..++. .-.++++.|++++|.++.+++..+.  .+++|++|++++|.++.+++..|..+++|+.|++++|
T Consensus        66 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A           66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD--KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc--CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence            445555555544431 1114555555555555555555444  4455555555555555555555555555555555555


Q ss_pred             CCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        115 LLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       115 ~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      .++.++...+  +++|+.|++++|+++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++.+.
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            5555554433  55555555555555555554455555555555555555555555555555555555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.86  E-value=1.5e-21  Score=158.26  Aligned_cols=155  Identities=25%  Similarity=0.448  Sum_probs=138.7

Q ss_pred             EEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCC
Q psy14767         38 VECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLS  117 (195)
Q Consensus        38 ~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~  117 (195)
                      ++|++++++.+|.++++.++.|++++|.++.+++..+.  ++++|++|++++|.++.+++.+|.++++|++|++++|.++
T Consensus        10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             EECCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            56788999999999999999999999999999888887  7899999999999999999999999999999999999999


Q ss_pred             cccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCc-ceeeccccccCCCCCcEEEcCCCCCCCCCCCC
Q psy14767        118 TVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT  193 (195)
Q Consensus       118 ~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~  193 (195)
                      .++...+  +++|++|++++|.++.++ +..+..+++|++|++++|. ++.+++..+..+++|+.|++++|.+++..+..
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            8887644  899999999999998754 3578889999999999998 67777778999999999999999999877665


Q ss_pred             C
Q psy14767        194 W  194 (195)
Q Consensus       194 ~  194 (195)
                      |
T Consensus       168 l  168 (549)
T 2z81_A          168 L  168 (549)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.2e-20  Score=140.65  Aligned_cols=156  Identities=21%  Similarity=0.360  Sum_probs=139.9

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      .+.+++.++.+..++. .-.++++.|++++|.++.++  .+.  .+++|++|++++|.++.+++..|..+++|+.|++++
T Consensus        43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            5778899998887764 22379999999999999864  344  789999999999999999988899999999999999


Q ss_pred             CCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       114 n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      |.++.++...+  +++|+.|++++|.++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|+++++++
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            99999888765  8999999999999999998888999999999999999999988889999999999999999999998


Q ss_pred             CCC
Q psy14767        192 RTW  194 (195)
Q Consensus       192 ~~~  194 (195)
                      ..|
T Consensus       199 ~~~  201 (272)
T 3rfs_A          199 GVF  201 (272)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.5e-20  Score=148.95  Aligned_cols=158  Identities=23%  Similarity=0.360  Sum_probs=119.0

Q ss_pred             ceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccc------------
Q psy14767         35 KRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA------------   99 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~------------   99 (195)
                      -+.++.+++.+..++... .  ++++.|++++|.++.+++..|.  .+++|++|++++|.++.+++..            
T Consensus        90 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A           90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             CCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC--SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh--ccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            356788888887776432 2  5788888888888877777665  6677777777777776665544            


Q ss_pred             -------------cCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767        100 -------------FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus       100 -------------~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                                   |.++++|+.|++++|.++.++....+++|+.|++++|.++.+.+..|..+++|+.|++++|+++++.
T Consensus       168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  247 (440)
T 3zyj_A          168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE  247 (440)
T ss_dssp             CCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence                         4445555566666666665554333677888888888888887778888889999999999999888


Q ss_pred             cccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        167 SEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       167 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +.++..+++|+.|++++|++++++++.|
T Consensus       248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          248 RNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             hhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            8888899999999999999999888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.7e-20  Score=141.03  Aligned_cols=156  Identities=18%  Similarity=0.252  Sum_probs=132.8

Q ss_pred             CceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         34 GKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      ..+.++.+++.+..++.. +.  +.++.|++++|.++.++..  .  .+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~--~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~  106 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--G--TLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLD  106 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--S--CCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEE
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--C--CCCcCCEEECCCCcCCcCch-hhccCCCCCEEE
Confidence            357889999999887543 33  6899999999999987765  2  67889999999999987754 678889999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      +++|+++.++...+  +++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..+..+++|+.|++++|+++.
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence            99999998887766  8899999999999999988888888999999999999999988888889999999999999998


Q ss_pred             CCCCCC
Q psy14767        189 LKPRTW  194 (195)
Q Consensus       189 ~~~~~~  194 (195)
                      +|+..|
T Consensus       187 ip~~~~  192 (290)
T 1p9a_G          187 IPKGFF  192 (290)
T ss_dssp             CCTTTT
T ss_pred             cChhhc
Confidence            887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=2.3e-20  Score=148.30  Aligned_cols=158  Identities=22%  Similarity=0.312  Sum_probs=119.7

Q ss_pred             ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCC---------
Q psy14767         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRG---------  102 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~---------  102 (195)
                      -+.++.+++.+..++....   ++++.|++++|.++.+++..|.  ++++|++|++++|.++.+++..|..         
T Consensus       101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A          101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS--SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc--ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            4678888888888775432   5888899999988888888776  6788888888888887776655544         


Q ss_pred             ----------------CCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767        103 ----------------VTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus       103 ----------------l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                                      +++|+.|++++|.++.++....+++|+.|++++|.++.+.+..|..+++|+.|++++|+++++.
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence                            4455555555555555544333667777778888877777777888888888888888888888


Q ss_pred             cccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        167 SEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       167 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +.++..+++|+.|++++|++++++++.|
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            8888888889999999998888887665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.7e-21  Score=139.31  Aligned_cols=158  Identities=16%  Similarity=0.319  Sum_probs=106.3

Q ss_pred             CceEEEecCCCceeeCCCCC---CceeEEEeecCC-ccccchhhhhccCCCCccEEEeec-CCcceecccccCCCCCccE
Q psy14767         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNN-INVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDE  108 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~-n~i~~~~~~~~~~l~~l~~  108 (195)
                      ..+.++.+++.++.+|....   ++++.|++++|. ++.+++..|.  ++++|++|++++ |.++.+++.+|.++++|+.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            35678888888888877433   578888888886 8888877776  678888888887 8888887777777777777


Q ss_pred             EEcCCCCCCcccC--------------------------ccc--ccccC-eeecCCCcccccCCCcCCCCCCCCEEecCC
Q psy14767        109 LDLSDNLLSTVPS--------------------------LIY--IPYLK-SINLAHNPIHQISSYSFQSTPGIRYIDMSN  159 (195)
Q Consensus       109 l~l~~n~l~~~~~--------------------------~~~--~~~l~-~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  159 (195)
                      |++++|.++.+|.                          ..+  +++|+ .+++++|+++.++...+.. ++|+.|++++
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            7777776665554                          222  44455 5555555555555544444 4555666666


Q ss_pred             Cc-ceeeccccccCC-CCCcEEEcCCCCCCCCCCCCC
Q psy14767        160 CQ-IHTIYSEAFYGI-DKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       160 n~-l~~~~~~~~~~l-~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      |+ ++++++.++..+ ++|+.|++++|+++++++..|
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~  225 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL  225 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence            63 666655556666 666666666666666665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=160.49  Aligned_cols=160  Identities=21%  Similarity=0.261  Sum_probs=140.8

Q ss_pred             CeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecC-CcceecccccCCCCC
Q psy14767         27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTN  105 (195)
Q Consensus        27 c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~~~~~~~~l~~  105 (195)
                      |.|.    ...++|++++++.+|. ++++++.|++++|.++.+.+..|.  ++++|+.|++++| .+..+++.+|.++++
T Consensus         2 C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~~   74 (844)
T 3j0a_A            2 CSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPN   74 (844)
T ss_dssp             CBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCTT
T ss_pred             ceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCCC
Confidence            6666    5899999999999999 889999999999999999888887  8899999999999 566777889999999


Q ss_pred             ccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccC--CCcCCCCCCCCEEecCCCcceeecc-ccccCCCCCcEEE
Q psy14767        106 MDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS--SYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLK  180 (195)
Q Consensus       106 l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~l~  180 (195)
                      |+.|++++|.++.+.+..+  +++|++|++++|.++...  ...+..+++|++|++++|.+++..+ ..++.+++|+.|+
T Consensus        75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID  154 (844)
T ss_dssp             CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred             CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence            9999999999998866555  899999999999998733  3458899999999999999998754 5789999999999


Q ss_pred             cCCCCCCCCCCCC
Q psy14767        181 LNGNKLASLKPRT  193 (195)
Q Consensus       181 l~~n~l~~~~~~~  193 (195)
                      +++|.++++.++.
T Consensus       155 Ls~N~i~~~~~~~  167 (844)
T 3j0a_A          155 FSSNQIFLVCEHE  167 (844)
T ss_dssp             EESSCCCCCCSGG
T ss_pred             CCCCcCCeeCHHH
Confidence            9999998877654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=2.1e-20  Score=139.38  Aligned_cols=136  Identities=20%  Similarity=0.322  Sum_probs=112.3

Q ss_pred             ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      .+.++.+++.++.++.. +.  ++++.|++++|.++.+++..+.  .+++|++|++++|.++.+++..|.++++|+.|++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57899999999988763 33  6899999999999988887776  7889999999999999998888999999999999


Q ss_pred             CCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767        112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYG  172 (195)
Q Consensus       112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  172 (195)
                      ++|.++.++...+  +++|+.|++++|.++.+. +..+..+++|++|++++|+++++++..+..
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            9999888777555  788999999999888754 557778888888888888888776544433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=3.2e-20  Score=134.19  Aligned_cols=133  Identities=19%  Similarity=0.355  Sum_probs=122.5

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA  134 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~  134 (195)
                      +.+++++++++.++....     ++++.|++++|.++.+++..|..+++|+.|++++|.++.+....+  +++|+.|+++
T Consensus        14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            468899999999887542     579999999999999999899999999999999999998876666  8999999999


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +|.++.+++..|.++++|++|++++|+++++.+..+..+++|+.|++++|+++++++..|
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence            999999999889999999999999999999999999999999999999999999998765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.1e-20  Score=140.37  Aligned_cols=158  Identities=15%  Similarity=0.314  Sum_probs=120.8

Q ss_pred             ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccch-hhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQK-EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      -+.++.+++.+..+|..+.  ++++.|++++|.++.++. ..+.  .+++|+.|++++|.+..+.+..+..+++|+.|++
T Consensus        80 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           80 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTT--TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhh--hccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            3556667777766665443  577888888888777665 4454  6778888888888888877777888888888888


Q ss_pred             CCCCCCc--ccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767        112 SDNLLST--VPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       112 ~~n~l~~--~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      ++|.++.  ++.... +++|+.|++++|.++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|++++
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            8888775  444333 7788888888888888877778888888888888888888877778888888888888888888


Q ss_pred             CCCCCC
Q psy14767        189 LKPRTW  194 (195)
Q Consensus       189 ~~~~~~  194 (195)
                      .++..+
T Consensus       238 ~~~~~~  243 (306)
T 2z66_A          238 SKKQEL  243 (306)
T ss_dssp             CSSSSC
T ss_pred             cCHHHH
Confidence            776544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=1.4e-19  Score=138.29  Aligned_cols=152  Identities=20%  Similarity=0.360  Sum_probs=96.9

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcce--ecccccCCCCCccEEEcC
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~--~~~~~~~~l~~l~~l~l~  112 (195)
                      -+.++.+++.++.+|..+.++++.|++++|.++.+++..+.  ++++|+.|++++|.++.  +.+..+.++++|+.++++
T Consensus       102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            46777788888888877778888888888888888887776  67888888888888864  556677777777777777


Q ss_pred             CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      +|.++.++...+ ++|+.|++++|.++.+.+..+..+++|+.|++++|+++++.+..+..+++|+.|++++|+++.+
T Consensus       180 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          180 DTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             SSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred             CCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC
Confidence            777766554332 4455555555555544444444444555555555544444443344444444444444444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.84  E-value=3.3e-20  Score=129.44  Aligned_cols=117  Identities=33%  Similarity=0.581  Sum_probs=102.6

Q ss_pred             cCCCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc
Q psy14767         19 TQASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR   98 (195)
Q Consensus        19 ~~~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~   98 (195)
                      ++.+||..|.|.    ...++|++++++.+|..++++++.|++++|.++.+++..|.  ++++|+.|++++|+++.+++.
T Consensus         2 ~~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~   75 (174)
T 2r9u_A            2 HSAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTG   75 (174)
T ss_dssp             CCCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChh
Confidence            457899999997    58899999999999999999999999999999999888887  788999999999999999888


Q ss_pred             ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCccccc
Q psy14767         99 AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQI  141 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~  141 (195)
                      .|..+++|+.|++++|.++.++...+  +++|+.|++++|.+...
T Consensus        76 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           76 VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            88889999999999998888887655  77888888888877644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.83  E-value=4e-20  Score=149.14  Aligned_cols=154  Identities=18%  Similarity=0.322  Sum_probs=137.7

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n  114 (195)
                      .+.++|+++.++.+|..++++++.|++++|.++.+++..+.  ++++|++|++++|.++.+.+.+|.++++|++|++++|
T Consensus         2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            46899999999999999999999999999999999988887  7899999999999999999999999999999999999


Q ss_pred             CCCcccCcccccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCC--cEEEcCCCCC--CCC
Q psy14767        115 LLSTVPSLIYIPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI--DTLKLNGNKL--ASL  189 (195)
Q Consensus       115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l--~~l~l~~n~l--~~~  189 (195)
                      .++.+|.. .+++|++|++++|.++.++ +..+..+++|++|++++|.+++.   .+..++++  +.|++++|.+  ++.
T Consensus        80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccccc
Confidence            99998887 7889999999999998864 46788999999999999999873   45667777  9999999998  666


Q ss_pred             CCCCC
Q psy14767        190 KPRTW  194 (195)
Q Consensus       190 ~~~~~  194 (195)
                      .+..|
T Consensus       156 ~~~~l  160 (520)
T 2z7x_B          156 DPEGL  160 (520)
T ss_dssp             CTTTT
T ss_pred             ccccc
Confidence            55543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=7.1e-20  Score=132.41  Aligned_cols=134  Identities=15%  Similarity=0.357  Sum_probs=121.1

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecc-cccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD-RAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~-~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      +.+++++|.++.++....     ..++.|++++|.++.+.+ ..|..+++|+.|++++|.++.++...+  +++|+.|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            478999999999877543     457899999999999954 568899999999999999999988666  899999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCCC
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS  195 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~  195 (195)
                      ++|.++.+++..|..+++|++|++++|+++++.+..+..+++|+.|++++|+++++++..|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc
Confidence            99999999998899999999999999999999889999999999999999999999887663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.83  E-value=5.5e-20  Score=127.87  Aligned_cols=113  Identities=33%  Similarity=0.582  Sum_probs=97.4

Q ss_pred             CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~  101 (195)
                      +||..|.|.    .+.++|+++.++.+|..++++++.|++++|.|+.+++..|.  ++++|++|++++|.++.+++..|.
T Consensus         2 ~CP~~C~C~----~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A            2 ACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             CCC-CCEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             cCcCcCCcC----CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence            699999998    47899999999999999999999999999999999888887  788999999999999999888888


Q ss_pred             CCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccc
Q psy14767        102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQ  140 (195)
Q Consensus       102 ~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~  140 (195)
                      ++++|+.|++++|+++.++...+  +++|+.|++++|.++.
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            88888888888888888777655  7778888888887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.83  E-value=6.8e-20  Score=146.38  Aligned_cols=158  Identities=20%  Similarity=0.385  Sum_probs=140.8

Q ss_pred             ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      .+.++.+++.++.++.. +.  ++++.|++++|.++.+.+..|.  ++++|++|++++|.++.+++..|.++++|+.|++
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            57899999999998653 33  6899999999999999888887  7899999999999999999888999999999999


Q ss_pred             CCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      ++|.++.++...+  +++|+.|++++|.++.+.+..|..+++|+.|++++|+++++++..+..+++|+.|++++|.++++
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            9999998877666  88999999999999999888899999999999999999998888888999999999999998888


Q ss_pred             CCCCC
Q psy14767        190 KPRTW  194 (195)
Q Consensus       190 ~~~~~  194 (195)
                      ++..|
T Consensus       192 ~~~~~  196 (477)
T 2id5_A          192 RDYSF  196 (477)
T ss_dssp             CTTCS
T ss_pred             Chhhc
Confidence            77654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=2e-19  Score=140.30  Aligned_cols=135  Identities=19%  Similarity=0.396  Sum_probs=98.4

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      .+++.++++++.++.+++..+.  .+++|+.|++++|.++.+++.+|..+++|+.|++++|.++.++...+  +++|+.|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            5677777777777777776665  56777777777777777777677777777777777777777666554  6777777


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++++|.++.+++..|..+++|++|++++|.++++.+..+..+++|+.|++++|++++++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence            77777777777666677777777777777777776666777777777777777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.5e-19  Score=148.41  Aligned_cols=159  Identities=19%  Similarity=0.318  Sum_probs=139.7

Q ss_pred             CceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      ..+.++.+++.++.+|....   ++++.|+|++|.|+.+++..|.  ++++|++|++++|+++.+++++|.++.+|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            35789999999999987543   6899999999999999999997  889999999999999999999999999999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCC----CcEEEcCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK----IDTLKLNG  183 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~----l~~l~l~~  183 (195)
                      +++|.++.++...+  +++|+.|++++|.++.+. +..+..+++|++|++++|+++++.+..+..+.+    ...++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            99999999988766  899999999999998765 456778899999999999999998777665433    34789999


Q ss_pred             CCCCCCCCCCC
Q psy14767        184 NKLASLKPRTW  194 (195)
Q Consensus       184 n~l~~~~~~~~  194 (195)
                      |+++.+++..+
T Consensus       211 n~l~~i~~~~~  221 (635)
T 4g8a_A          211 NPMNFIQPGAF  221 (635)
T ss_dssp             CCCCEECTTTT
T ss_pred             CcccccCcccc
Confidence            99998887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=2.2e-19  Score=137.24  Aligned_cols=157  Identities=19%  Similarity=0.318  Sum_probs=105.4

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcce--ecccccCCC---------
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF--VDDRAFRGV---------  103 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~--~~~~~~~~l---------  103 (195)
                      -+.++.+++.+..+|..+.++++.|++++|.++.+++..+.  .+++|+.|++++|.++.  +.+..+..+         
T Consensus       104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~  181 (332)
T 2ft3_A          104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE  181 (332)
T ss_dssp             CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCS
T ss_pred             CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccccCCccCEEECcC
Confidence            45677777777777777667777778887777777777665  67778888888887753  444455444         


Q ss_pred             -----------CCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccc
Q psy14767        104 -----------TNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF  170 (195)
Q Consensus       104 -----------~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  170 (195)
                                 ++|+.|++++|.++.++...+  +++|+.|++++|.++.+++..+..+++|+.|++++|+++.++. .+
T Consensus       182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l  260 (332)
T 2ft3_A          182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GL  260 (332)
T ss_dssp             SBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TG
T ss_pred             CCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hh
Confidence                       234444444444444443333  5667777777777777766666677777777777777776643 46


Q ss_pred             cCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        171 YGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       171 ~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      ..+++|+.|++++|+++++++..|
T Consensus       261 ~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          261 PDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             GGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             hcCccCCEEECCCCCCCccChhHc
Confidence            777778888888888887776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=2.4e-19  Score=147.01  Aligned_cols=136  Identities=19%  Similarity=0.387  Sum_probs=100.0

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      .+++.+++++|.+..+++..+.  .+++|+.|++++|.++.+++..|..+++|+.|++++|.++.++...+  +++|+.|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            5667777777777777777665  56777777777777777777677777777777777777777666554  6777777


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      ++++|.++.+++..|..+++|++|++++|.++++++..+..+++|+.|++++|.+++++.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  188 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL  188 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh
Confidence            777777777776666777777777777777777777677777777777777777776653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=3.8e-19  Score=145.79  Aligned_cols=159  Identities=22%  Similarity=0.321  Sum_probs=143.0

Q ss_pred             CceEEEecCCCceeeCC-CCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         34 GKRTVECIDRNFYTIPE-GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      ..+.++.+++.++.++. .+.  +++++|++++|.++.+.+..|.  ++++|++|++++|.++.+.+.+|.++++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEee
Confidence            35789999999999855 443  6899999999999999898887  889999999999999999999999999999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCc--EEEcCCCCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID--TLKLNGNKL  186 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~--~l~l~~n~l  186 (195)
                      +++|.++.++...+  +++|++|++++|.++.++...+..+++|++|++++|.++++.+..++.+++++  .+++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            99999998865555  89999999999999988755666699999999999999999888899999999  899999999


Q ss_pred             CCCCCCCC
Q psy14767        187 ASLKPRTW  194 (195)
Q Consensus       187 ~~~~~~~~  194 (195)
                      +++++..|
T Consensus       192 ~~~~~~~~  199 (606)
T 3t6q_A          192 AGIEPGAF  199 (606)
T ss_dssp             CEECTTTT
T ss_pred             CccChhHh
Confidence            99998776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.1e-19  Score=140.65  Aligned_cols=151  Identities=19%  Similarity=0.295  Sum_probs=134.7

Q ss_pred             ceEEEecCCCceeeCCCCC----CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         35 KRTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~----~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      .+.++.+++.++.+|....    ++++.|++++|.|+.+++..|.  ++++|+.|++++|.++.+++..|.++++|+.|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc--CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            4689999999999887542    6899999999999999998887  789999999999999999998999999999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcC---CCCCCCCEEecCCCcceeeccccccCCCC--CcEEEcCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSF---QSTPGIRYIDMSNCQIHTIYSEAFYGIDK--IDTLKLNG  183 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--l~~l~l~~  183 (195)
                      +++|.++.++...+  +++|+.|++++|.++.++...|   ..+++|+.|++++|++++++...+..++.  ++.|++++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99999998877666  8999999999999999988776   56899999999999999998888888876  48899999


Q ss_pred             CCCC
Q psy14767        184 NKLA  187 (195)
Q Consensus       184 n~l~  187 (195)
                      |++.
T Consensus       199 N~~~  202 (361)
T 2xot_A          199 NPLE  202 (361)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            9874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=7.2e-19  Score=125.88  Aligned_cols=133  Identities=18%  Similarity=0.324  Sum_probs=120.6

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA  134 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~  134 (195)
                      +.++.+++.++.++....     +++++|++++|.++.+++..|..+++|+.|++++|.++.++...+  +++|+.|+++
T Consensus        10 ~~v~c~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIP-----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCccCCCCCCC-----CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            457888899988876543     579999999999999998889999999999999999999988766  8999999999


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|+++++++..|
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  144 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF  144 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence            999999998888999999999999999999988889999999999999999999998765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=2.9e-19  Score=135.67  Aligned_cols=155  Identities=19%  Similarity=0.226  Sum_probs=110.9

Q ss_pred             CceEEEecCCCce---eeCCCCC--CceeEEEeec-CCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCcc
Q psy14767         34 GKRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMD  107 (195)
Q Consensus        34 ~~~~~~c~~~~l~---~~p~~~~--~~l~~L~l~~-n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~  107 (195)
                      ..+.++.+++.+.   .+|..+.  ++++.|++++ |.+....+..+.  .+++|++|++++|.++...+..|..+++|+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            4567888888887   4676654  6899999994 888865566665  678899999999998877777888888888


Q ss_pred             EEEcCCCCCC-cccCccc-ccccCeeecCCCcccccCCCcCCCCC-CCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767        108 ELDLSDNLLS-TVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTP-GIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       108 ~l~l~~n~l~-~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                      +|++++|.++ .+|.... +++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+. |+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            9999888888 4444444 77888888888887754444555665 677777777777655555555544 555555555


Q ss_pred             CCCCCCC
Q psy14767        185 KLASLKP  191 (195)
Q Consensus       185 ~l~~~~~  191 (195)
                      ++++.++
T Consensus       208 ~l~~~~~  214 (313)
T 1ogq_A          208 MLEGDAS  214 (313)
T ss_dssp             EEEECCG
T ss_pred             cccCcCC
Confidence            5554444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.9e-19  Score=128.30  Aligned_cols=134  Identities=21%  Similarity=0.328  Sum_probs=120.9

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeee
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN  132 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~  132 (195)
                      ..+.++.+++.++.++....     ++|+.|++++|.++.+.+..|..+++|+.|++++|.++.++...+  +++|+.|+
T Consensus        20 s~~~v~c~~~~l~~ip~~~~-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP-----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcCccCCCCC-----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            34568899999999887543     689999999999999999999999999999999999999988776  89999999


Q ss_pred             cCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       133 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +++|.++.+++..|..+++|++|++++|+++.++ ..+..+++|+.|++++|+++++++..|
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHH
Confidence            9999999999888999999999999999999874 457899999999999999999998765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.81  E-value=2.8e-19  Score=139.42  Aligned_cols=130  Identities=22%  Similarity=0.399  Sum_probs=114.3

Q ss_pred             ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      .+.++..++.++.+|....   ++++.|++++|.++.+++..+.  .+++|++|++++|.++.+++..|.++++|+.|++
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            3567888888888887652   7899999999999999888887  7899999999999999999888999999999999


Q ss_pred             CCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767        112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus       112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                      ++|.++.++...+  +++|++|++++|.++.+++..+..+++|++|++++|+++++.
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence            9999999988775  889999999999999988888888899999999999887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.81  E-value=4.5e-19  Score=125.60  Aligned_cols=128  Identities=17%  Similarity=0.334  Sum_probs=116.3

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc-ccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR-AFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~-~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      +.+++++|+++.++....     .+++.|++++|.++.+++. .|..+++|+.|++++|.++.++...+  +++|+.|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~-----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcCcCccCCC-----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            678999999999887553     3799999999999999875 58899999999999999998866655  899999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      ++|+++.+++..|.++++|++|++++|+++++.+..+..+++|+.|++++|++++.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999999998899999999999999999999899999999999999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=6e-19  Score=143.48  Aligned_cols=158  Identities=20%  Similarity=0.336  Sum_probs=141.8

Q ss_pred             ceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      .+.++.+++.++.++.. +.  +++++|++++|.++.+++..|.  ++++|++|++++|.++.+++.+|.++++|++|++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57899999999998764 33  6899999999999999988887  7899999999999999999999999999999999


Q ss_pred             CCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCC----cEEEcCCC
Q psy14767        112 SDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI----DTLKLNGN  184 (195)
Q Consensus       112 ~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l----~~l~l~~n  184 (195)
                      ++|.++.++...+  +++|++|++++|.++.+. +..+..+++|++|++++|+++++.+..++.+.++    ..+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9999999887555  899999999999998754 5678889999999999999999988888888777    89999999


Q ss_pred             CCCCCCCCCC
Q psy14767        185 KLASLKPRTW  194 (195)
Q Consensus       185 ~l~~~~~~~~  194 (195)
                      .++++++..|
T Consensus       188 ~l~~~~~~~~  197 (570)
T 2z63_A          188 PMNFIQPGAF  197 (570)
T ss_dssp             CCCEECTTTT
T ss_pred             CceecCHHHh
Confidence            9999988766

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.80  E-value=4.7e-19  Score=145.27  Aligned_cols=159  Identities=19%  Similarity=0.295  Sum_probs=140.3

Q ss_pred             CceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         34 GKRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      ..+.++.+++.++.++... .  ++++.|++++|.++.+++..|.  ++++|++|++++|.++.+.+.+|.++++|++|+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            3578999999999988743 3  6899999999999999988887  789999999999999999999999999999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeeccccccCCCCCc----EEEcCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID----TLKLNG  183 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~----~l~l~~  183 (195)
                      +++|.++.++...+  +++|++|++++|.++.+. +..+..+++|++|++++|+++++.+..++.+.+++    .+++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999998886555  899999999999998754 56788999999999999999999887777665554    899999


Q ss_pred             CCCCCCCCCCC
Q psy14767        184 NKLASLKPRTW  194 (195)
Q Consensus       184 n~l~~~~~~~~  194 (195)
                      |+++++++..|
T Consensus       191 n~l~~~~~~~~  201 (606)
T 3vq2_A          191 NPIDFIQDQAF  201 (606)
T ss_dssp             CCCCEECTTTT
T ss_pred             CCcceeCcccc
Confidence            99999988765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=7.4e-19  Score=133.61  Aligned_cols=148  Identities=20%  Similarity=0.293  Sum_probs=106.5

Q ss_pred             eEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc-CCCCCccEEEcCCC
Q psy14767         36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDN  114 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~-~~l~~l~~l~l~~n  114 (195)
                      +.++.+++.+..++....++++.|++++|.++.+++..+.  .+++|+.|++++|.++.+.+..+ ..+++|+.|++++|
T Consensus       102 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             CEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            4455555555555555556677777777777777666665  56778888888888877766555 35677888888888


Q ss_pred             CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767        115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~  187 (195)
                      .++.++...++++|+.|++++|.++.+++. +..+++|+.|++++|++++++ ..+..+++|+.|++++|+++
T Consensus       180 ~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCB
T ss_pred             cCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCcc
Confidence            887776666677788888888888777664 666778888888888887764 34677778888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.80  E-value=9.9e-19  Score=122.13  Aligned_cols=130  Identities=16%  Similarity=0.289  Sum_probs=117.9

Q ss_pred             eeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        56 l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      .+.+++++++++.++....     ++++.|++++|.++.+++..|..+++|+.|++++|.++.++...+  +++|+.|++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCccCCCCCC-----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            4578899999999876543     589999999999999998889999999999999999999988765  899999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++|.++.+++..+..+++|++|++++|+++++++..+..+++|+.|++++|++++..
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999999999888899999999999999999998888899999999999999988754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=4.4e-19  Score=135.55  Aligned_cols=75  Identities=12%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      ...++++++.++.+|..+.  ++++.|++++|.++.++... .  .+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus        83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-Q--QFAGLETLTLARNPLRAL-PASIASLNRLRELSIR  158 (328)
T ss_dssp             CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-G--GGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEE
T ss_pred             eeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-h--ccCCCCEEECCCCccccC-cHHHhcCcCCCEEECC
Confidence            4556666666666665443  45555666665555443322 2  344555555555555433 2233344444444444


Q ss_pred             C
Q psy14767        113 D  113 (195)
Q Consensus       113 ~  113 (195)
                      +
T Consensus       159 ~  159 (328)
T 4fcg_A          159 A  159 (328)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=5.9e-19  Score=144.73  Aligned_cols=128  Identities=22%  Similarity=0.408  Sum_probs=103.1

Q ss_pred             eEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         36 RTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      +.+++.++.+..+|..+.   ++++.|++++|.++.+++..|.  .+++|+.|++++|.++.+++..|.++++|+.|+++
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            557777777778887542   6788889999888888887776  77888888888888888888888888888888888


Q ss_pred             CCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767        113 DNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI  165 (195)
Q Consensus       113 ~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  165 (195)
                      +|.++.++...+  +++|+.|++++|.++.+++..+..+++|++|++++|.++++
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            888888887765  77888888888888888777777777888888877777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.79  E-value=7.6e-19  Score=124.52  Aligned_cols=125  Identities=22%  Similarity=0.395  Sum_probs=114.8

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA  134 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~  134 (195)
                      +.+++++|.++.++....     ++++.|++++|.++.++ ..|..+++|+.|++++|.++.++...+  +++|+.|+++
T Consensus        13 ~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP-----RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC-----TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCCcCCCCCC-----CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            468999999999886543     57999999999999886 689999999999999999999988777  8999999999


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~  187 (195)
                      +|.++.+++..|..+++|++|++++|+++.+++..+..+++|+.|++++|++.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99999999989999999999999999999998888999999999999999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=1.4e-18  Score=137.85  Aligned_cols=136  Identities=25%  Similarity=0.438  Sum_probs=123.9

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      ++++.+++++|.++.+.+..+.  .+++|+.|++++|.++.+.+..|.++++|+.|++++|.++.++...+  +++|+.|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            4789999999999988888887  78999999999999999998899999999999999999998876655  8899999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      ++++|.++.+.+..+..+++|++|++++|+++++++..+..+++|+.|++++|++++..+
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999988889999999999999999999988888999999999999999987665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=1.1e-18  Score=133.40  Aligned_cols=155  Identities=15%  Similarity=0.281  Sum_probs=97.2

Q ss_pred             ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecC----------------------
Q psy14767         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC----------------------   90 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n----------------------   90 (195)
                      -++++.+++.+..+|..+.  ++++.|++++|.++.++.. +.  .+++|++|++++|                      
T Consensus       106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GG--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-Hh--cCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            4678888888887777654  6788888888888766544 33  4455555555554                      


Q ss_pred             -----------CcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecC
Q psy14767         91 -----------KLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS  158 (195)
Q Consensus        91 -----------~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~  158 (195)
                                 .++.++ ..+..+++|+.|++++|.++.++.... +++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus       183 ~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             TTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence                       444332 234555556666666666665554433 5666666666666555555566666677777777


Q ss_pred             CCcceeeccccccCCCCCcEEEcCCCCCCCCCCCC
Q psy14767        159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRT  193 (195)
Q Consensus       159 ~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~  193 (195)
                      +|.+.+..+..+..+++|+.|++++|++.+..|+.
T Consensus       262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            76666555556667777777777777666555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=1.3e-18  Score=144.46  Aligned_cols=159  Identities=19%  Similarity=0.310  Sum_probs=142.0

Q ss_pred             CceEEEecCCCceeeCCC-CC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         34 GKRTVECIDRNFYTIPEG-ID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      ..+.++.+++.++.+|.. +.  ++++.|++++|.++.+.+..+.  ++++|++|++++|.++.+++.+|.++++|+.|+
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            357899999999988864 32  6899999999999999888887  789999999999999999988899999999999


Q ss_pred             cCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecccccc--CCCCCcEEEcCCCCC
Q psy14767        111 LSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY--GIDKIDTLKLNGNKL  186 (195)
Q Consensus       111 l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~l~~l~l~~n~l  186 (195)
                      +++|.++.++...+  +++|++|++++|.++.+++..+..+++|++|++++|.++++.+..+.  .+++|+.|++++|++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            99999999887666  89999999999999998888889999999999999999998776654  458999999999999


Q ss_pred             CCCCCCCC
Q psy14767        187 ASLKPRTW  194 (195)
Q Consensus       187 ~~~~~~~~  194 (195)
                      +++++..|
T Consensus       184 ~~~~~~~~  191 (680)
T 1ziw_A          184 KEFSPGCF  191 (680)
T ss_dssp             CCBCTTGG
T ss_pred             cccChhhh
Confidence            99888654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=7.3e-19  Score=142.51  Aligned_cols=167  Identities=19%  Similarity=0.325  Sum_probs=137.0

Q ss_pred             CCCCCCCeeccc------------CCceEEEecCCCceeeCC-CCC--CceeEEEeecCCccccchhhhhccCCCCccEE
Q psy14767         21 ASCPLGCSCKWK------------AGKRTVECIDRNFYTIPE-GID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKL   85 (195)
Q Consensus        21 ~~c~~~c~c~~~------------~~~~~~~c~~~~l~~~p~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l   85 (195)
                      .+||..|.|+..            ...+.++.+++.++.++. .+.  ++++.|++++|.++.+++..|.  ++++|++|
T Consensus         2 ~~C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L   79 (549)
T 2z81_A            2 LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY--SLGSLEHL   79 (549)
T ss_dssp             CEECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEE
T ss_pred             ccCCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc--ccccCCEE
Confidence            358888877643            135789999999998854 443  6899999999999999988887  78999999


Q ss_pred             EeecCCcceecccccCCCCCccEEEcCCCCCCcc--cCccc-ccccCeeecCCCc-ccccCCCcCCCCCCCCEEecCCCc
Q psy14767         86 YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV--PSLIY-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQ  161 (195)
Q Consensus        86 ~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~--~~~~~-~~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~  161 (195)
                      ++++|.++.+++.+|.++++|++|++++|.++.+  +.... +++|+.|++++|. +..+++..+..+++|++|++++|+
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999999999988899999999999999999865  33333 8899999999998 677777788899999999999999


Q ss_pred             ceeeccccccC------------------------CCCCcEEEcCCCCCCCC
Q psy14767        162 IHTIYSEAFYG------------------------IDKIDTLKLNGNKLASL  189 (195)
Q Consensus       162 l~~~~~~~~~~------------------------l~~l~~l~l~~n~l~~~  189 (195)
                      +++..+..+..                        +++|+.|++++|++++.
T Consensus       160 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            98876655543                        56677777777777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=2.6e-18  Score=122.05  Aligned_cols=146  Identities=16%  Similarity=0.260  Sum_probs=120.4

Q ss_pred             ceEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      .+.++++++.+..+| ++.  ++++.|++++|.++.++  .+.  .+++|++|++++|.++...+..+..+++|+.|+++
T Consensus        46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            578999999999888 443  78999999999887764  344  68899999999999998777789999999999999


Q ss_pred             CCCCCcc-cCccc-ccccCeeecCCCc-ccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        113 DNLLSTV-PSLIY-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       113 ~n~l~~~-~~~~~-~~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      +|.++.. +.... +++|+.|++++|. ++.++  .+..+++|++|++++|+++++.  .+..+++|+.|++++|++.+.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~~  196 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGK  196 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-----
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCCc
Confidence            9999863 33223 8899999999998 88775  5788899999999999999875  688899999999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=1.1e-18  Score=132.46  Aligned_cols=102  Identities=15%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             eEEEecC-CCce-eeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         36 RTVECID-RNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        36 ~~~~c~~-~~l~-~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      +.++.++ +.+. .+|..+.  ++++.|++++|.++...+..+.  .+++|++|++++|.++...+..+..+++|+.|++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            4566663 5554 3554443  5667777777777644444444  4566666666666666555555666666666666


Q ss_pred             CCCCCC-cccCccc-cc-ccCeeecCCCccc
Q psy14767        112 SDNLLS-TVPSLIY-IP-YLKSINLAHNPIH  139 (195)
Q Consensus       112 ~~n~l~-~~~~~~~-~~-~l~~l~l~~n~~~  139 (195)
                      ++|.++ .+|.... ++ +|+.|++++|.++
T Consensus       157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             cCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            666665 3333332 32 4444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=1e-18  Score=121.03  Aligned_cols=141  Identities=18%  Similarity=0.245  Sum_probs=121.1

Q ss_pred             eeCCCCCCceeEEEeecCCcc--ccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCc-ccCcc
Q psy14767         47 TIPEGIDLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLI  123 (195)
Q Consensus        47 ~~p~~~~~~l~~L~l~~n~i~--~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~-~~~~~  123 (195)
                      .++...++.++.|++++|.++  .++.. +.  .+++|+.|++++|.++.+  ..+..+++|+.|++++|.++. ++...
T Consensus        17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             HHTTSCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             hhccCCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            345566678999999999998  66554 44  678999999999999988  578899999999999999997 44444


Q ss_pred             c-ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeecc---ccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767        124 Y-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYGIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       124 ~-~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      . +++|+.|++++|.++.++. ..+..+++|+.|++++|.++++++   ..+..+++|+.|++++|.+..++..
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            4 8999999999999998764 578889999999999999999876   5789999999999999999988764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=3.3e-18  Score=137.15  Aligned_cols=147  Identities=20%  Similarity=0.291  Sum_probs=87.7

Q ss_pred             EEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC-CCCCccEEEcCCCC
Q psy14767         37 TVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR-GVTNMDELDLSDNL  115 (195)
Q Consensus        37 ~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~-~l~~l~~l~l~~n~  115 (195)
                      .++.+++.+..+|....++++.|++++|.++.+.+..+.  .+++|+.|++++|.++.+.+..+. .+++|+.|++++|.
T Consensus       103 ~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            344444444444443345566666666666665555554  456666666666666665555554 45666666666666


Q ss_pred             CCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767        116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       116 l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~  187 (195)
                      ++.++...++++|+.|++++|.++++++. +..+++|+.|++++|.+++++. .+..+++|+.|++++|++.
T Consensus       181 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBC
T ss_pred             cccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCc
Confidence            66665555566666666666666666553 5556666666666666666533 3556666666666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=3.3e-18  Score=126.87  Aligned_cols=147  Identities=18%  Similarity=0.277  Sum_probs=119.5

Q ss_pred             CceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      ..+.++++++.+..+|. .-.++++.|++++|.++.+++  +.  .+++|+.|++++|.++.+++.  .. .+|+.|+++
T Consensus        42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECC
T ss_pred             cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCcc--cc-CcccEEEcc
Confidence            35778888888888873 113689999999999998877  54  788999999999999887653  33 889999999


Q ss_pred             CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +|.++.++....+++|+.|++++|+++.++  .+..+++|+.|++++|+++++  ..+..+++|+.|++++|++++.+.
T Consensus       115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             SSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            999988765434888999999999998875  577788999999999999887  568888999999999998877654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1e-17  Score=126.86  Aligned_cols=144  Identities=15%  Similarity=0.305  Sum_probs=76.5

Q ss_pred             eEEEecCCCceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         36 RTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      +.++.+++.+..++. +.  ++++.|++++|.++.++  .+.  .+++|+.|++++|.++.+++  +..+++|+.|++++
T Consensus        66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           66 IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL  138 (308)
T ss_dssp             CEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCC
Confidence            344444444444433 11  34455555555544432  122  34455555555555554432  44555555555555


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      |.++.++....+++|+.|++++|.++.+++  +..+++|+.|++++|+++++.+  +..+++|+.|++++|++++++
T Consensus       139 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence            555554442225556666666666655543  5556666666666666666543  556666677777777666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.1e-17  Score=125.76  Aligned_cols=146  Identities=19%  Similarity=0.337  Sum_probs=93.6

Q ss_pred             ceEEEecCCCceeeCCC-CCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      .+.++++++.+..+|.- -.++++.|++++|.++.+++  +.  .+++|+.|++++|.++.++  .+..+++|+.|++++
T Consensus        48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH  121 (291)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred             ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCC
Confidence            45677777777666531 12567777777777777665  43  5667777777777776654  266667777777777


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      |.++.++....+++|+.|++++|.++.+  ..+..+++|+.|++++|+++++.+  +..+++|+.|++++|++++++
T Consensus       122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          122 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh
Confidence            7776654333366677777777766665  245566666666666666666544  566666666666666666553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=3.7e-18  Score=143.70  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             eEEEecCCCce-eeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         36 RTVECIDRNFY-TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        36 ~~~~c~~~~l~-~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      +.++..++.+. .+|..+.  ++++.|++++|.++...+..+.  .+++|+.|++++|.++...|..+..+++|+.++++
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            44555555554 2343332  4566666666666644444444  45666666666666665555556666666666666


Q ss_pred             CCCCC
Q psy14767        113 DNLLS  117 (195)
Q Consensus       113 ~n~l~  117 (195)
                      +|.++
T Consensus       547 ~N~l~  551 (768)
T 3rgz_A          547 TNLFN  551 (768)
T ss_dssp             SSEEE
T ss_pred             CCccC
Confidence            65544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1.4e-17  Score=135.39  Aligned_cols=138  Identities=18%  Similarity=0.307  Sum_probs=103.5

Q ss_pred             CceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      ..+.++++++.+..+|..+.++++.|++++|.++.++ .     .+++|+.|++++|.++.++.  +.+  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            4678999999999999988889999999999999877 2     35789999999999888655  543  788888888


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      |.++.+|.  .+++|+.|++++|.++.++.    .+++|+.|++++|++++++.  +.  ++|+.|++++|+++.+|.
T Consensus       130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          130 NQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            88887776  46677777777777776654    34567777777777766543  33  566666666666665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=1.7e-17  Score=125.67  Aligned_cols=147  Identities=25%  Similarity=0.376  Sum_probs=115.5

Q ss_pred             ceEEEecCCCceeeCCC-CCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPEG-IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      .+.+++.++.+..+|.- -.++++.|++++|.++.+++  +.  .+++|++|++++|.++.++  .+..+++|+.|++++
T Consensus        43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence            56788888888777631 12688888888888888776  44  6788888888888888764  577888888888888


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      |.++.++....+++|+.|++++|.++.+++  +..+++|+.|++++|+++++.+  +..+++|+.|++++|+++++++
T Consensus       117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          117 TQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence            888877663337888888888888887765  6677888888888888888754  7788888888888888887764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.75  E-value=7.2e-18  Score=128.15  Aligned_cols=147  Identities=20%  Similarity=0.227  Sum_probs=111.8

Q ss_pred             eEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCC
Q psy14767         36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL  115 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~  115 (195)
                      +.++.+++.++.+|..  +.++.|++++|.++.++..     .+++|+.|++++|.++.+.+..+..+++|+.|++++|.
T Consensus        83 ~~L~Ls~n~l~~l~~~--~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           83 RTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             CEEECCSSEEEEEEEC--TTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             CEEECcCCccccccCC--CCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            3344444444444322  3455555555555554433     24678999999999999888888889999999999999


Q ss_pred             CCcccCccc---ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767        116 LSTVPSLIY---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       116 l~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      ++.++...+   +++|+.|++++|.++.++..  ..+++|++|++++|+++++++. +..+++|+.|++++|+++++++.
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~  232 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA  232 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH
Confidence            997665443   68999999999999988643  3478999999999999998765 88889999999999999987653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=4.7e-18  Score=128.90  Aligned_cols=152  Identities=16%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             eEEEecCCCce-eeCCCC----CCceeEEEeecCCccccchhhhhccCC-----CCccEEEeecCCcceecccccCCCCC
Q psy14767         36 RTVECIDRNFY-TIPEGI----DLDTQVLDLSSNNINVLQKEIFLQMGI-----TNIQKLYLRKCKLEFVDDRAFRGVTN  105 (195)
Q Consensus        36 ~~~~c~~~~l~-~~p~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~l-----~~L~~l~l~~n~i~~~~~~~~~~l~~  105 (195)
                      +.++.+++.+. .+|..+    .++++.|++++|.++.+ +..+.  .+     ++|++|++++|.++.+++..|..+++
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            45555555555 345433    24566666666666655 22222  22     55666666666666555555555566


Q ss_pred             ccEEEcCCCCCCc---ccCcc--c-ccccCeeecCCCcccccC---CCcCCCCCCCCEEecCCCcceeecc-ccccCCCC
Q psy14767        106 MDELDLSDNLLST---VPSLI--Y-IPYLKSINLAHNPIHQIS---SYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDK  175 (195)
Q Consensus       106 l~~l~l~~n~l~~---~~~~~--~-~~~l~~l~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~  175 (195)
                      |+.|++++|++..   ++...  . +++|+.|++++|+++.++   ...+..+++|++|++++|++++..+ ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            6666666555432   11111  1 444455555555444221   1122233444444444444444321 22333344


Q ss_pred             CcEEEcCCCCCCCCC
Q psy14767        176 IDTLKLNGNKLASLK  190 (195)
Q Consensus       176 l~~l~l~~n~l~~~~  190 (195)
                      |+.|++++|+++.+|
T Consensus       255 L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          255 LNSLNLSFTGLKQVP  269 (312)
T ss_dssp             CCEEECTTSCCSSCC
T ss_pred             CCEEECCCCccChhh
Confidence            444444444444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.74  E-value=2.8e-17  Score=126.56  Aligned_cols=158  Identities=16%  Similarity=0.300  Sum_probs=128.8

Q ss_pred             CceEEEecCCCceeeCCCCC---CceeEEEeecCCcc-ccchhhhhccCCCCccE-EEeecCCcceecccccCCCCCccE
Q psy14767         34 GKRTVECIDRNFYTIPEGID---LDTQVLDLSSNNIN-VLQKEIFLQMGITNIQK-LYLRKCKLEFVDDRAFRGVTNMDE  108 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~-~~~~~~~~~~~l~~L~~-l~l~~n~i~~~~~~~~~~l~~l~~  108 (195)
                      ..+.++.+++.++.+|.+..   ++++.|++++|.+. .+++..|.  +++++.+ +.+.+|+++.+++++|..+++|+.
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~--~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC--SCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh--cchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            35789999999999998653   68999999999985 47777776  6777665 556678999999889999999999


Q ss_pred             EEcCCCCCCcccCcc-------------------------c---ccccCeeecCCCcccccCCCcCCCCCCCCEEecC-C
Q psy14767        109 LDLSDNLLSTVPSLI-------------------------Y---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS-N  159 (195)
Q Consensus       109 l~l~~n~l~~~~~~~-------------------------~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~-~  159 (195)
                      +++++|.++.++...                         +   ...++.|++++|+++.+++..|.. .+++.+++. +
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~  187 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDN  187 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-EEEEEEECTTC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-cchhHHhhccC
Confidence            999888876554322                         1   124667889999999998877755 679999997 5


Q ss_pred             CcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        160 CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       160 n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      |.++.+++++|..+++|+.|++++|+++.+|+..|
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            78999988899999999999999999999998766

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=3.1e-17  Score=121.59  Aligned_cols=141  Identities=17%  Similarity=0.249  Sum_probs=121.5

Q ss_pred             EEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCC
Q psy14767         38 VECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL  116 (195)
Q Consensus        38 ~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l  116 (195)
                      .++.++.+++++. .-.++++.|++++|.++.++  .+.  .+++|+.|++++|.++.+++  +..+++|+.|++++|++
T Consensus        24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             HHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence            4456667766662 11268999999999999887  344  67899999999999999876  88999999999999999


Q ss_pred             CcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       117 ~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      +.++.... ++|+.|++++|.++.++  .+..+++|+.|++++|++++++  .+..+++|+.|++++|+++++
T Consensus        98 ~~l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           98 KNLNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SCCTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCcCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            99887666 89999999999999875  4888999999999999999984  588999999999999999987

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=1.5e-17  Score=140.03  Aligned_cols=156  Identities=19%  Similarity=0.139  Sum_probs=115.5

Q ss_pred             ceEEEecCCCcee-eCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYT-IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~-~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      -+.++..++.+.. +|..+.  ++++.|++++|.++...+..+.  .+++|+.|++++|.++...+..+..+++|+.|++
T Consensus       396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            4566666666663 454443  5777778888877766566565  5677888888888887766777777888888888


Q ss_pred             CCCCCCc-ccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        112 SDNLLST-VPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       112 ~~n~l~~-~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      ++|.++. +|.... +++|+.|++++|++++..+.++..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence            8888874 343333 77888888888888876666777888888888888888877777788888888888888888755


Q ss_pred             CCC
Q psy14767        190 KPR  192 (195)
Q Consensus       190 ~~~  192 (195)
                      .|.
T Consensus       554 ip~  556 (768)
T 3rgz_A          554 IPA  556 (768)
T ss_dssp             CCG
T ss_pred             CCh
Confidence            443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=8.7e-18  Score=127.42  Aligned_cols=152  Identities=13%  Similarity=0.077  Sum_probs=109.7

Q ss_pred             ceEEEecCCCceeeCCCC-------CCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCccee---c-ccccCCC
Q psy14767         35 KRTVECIDRNFYTIPEGI-------DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV---D-DRAFRGV  103 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~-------~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~---~-~~~~~~l  103 (195)
                      -+.++.+++.+..+|..+       .++++.|++++|.++.+++..+.  .+++|++|++++|.+...   + ...+..+
T Consensus       123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            577888888887765432       26888999999999888877776  778899999998886542   1 1123677


Q ss_pred             CCccEEEcCCCCCCcccC---ccc--ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccccccCCCCCc
Q psy14767        104 TNMDELDLSDNLLSTVPS---LIY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID  177 (195)
Q Consensus       104 ~~l~~l~l~~n~l~~~~~---~~~--~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~  177 (195)
                      ++|+.|++++|.++.++.   ..+  +++|+.|++++|.+++..+ ..+..+++|++|++++|+++.++... .  ++|+
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-~--~~L~  277 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-P--AKLS  277 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC-C--SEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc-c--CCce
Confidence            888888888888874433   222  5788888888888877653 44556678888888888888665433 2  6778


Q ss_pred             EEEcCCCCCCCCCC
Q psy14767        178 TLKLNGNKLASLKP  191 (195)
Q Consensus       178 ~l~l~~n~l~~~~~  191 (195)
                      .|++++|+++++|.
T Consensus       278 ~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          278 VLDLSYNRLDRNPS  291 (312)
T ss_dssp             EEECCSSCCCSCCC
T ss_pred             EEECCCCCCCCChh
Confidence            88888888887743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.73  E-value=6.3e-17  Score=130.47  Aligned_cols=134  Identities=20%  Similarity=0.235  Sum_probs=69.6

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec--ccccCCCCCccEEEcCCCCCCc-ccCccc--cccc
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLST-VPSLIY--IPYL  128 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~--~~~~~~l~~l~~l~l~~n~l~~-~~~~~~--~~~l  128 (195)
                      ++++.|++++|.++...+..+.  .+++|+.|++++|.++.++  +..+..+++|+.|++++|.++. ++...+  +++|
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            4566666666666654444443  4556666666666665432  2345555666666666666654 554433  4555


Q ss_pred             CeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767        129 KSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       129 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      +.|++++|++++..+..+.  ++|+.|++++|+++.++.. +..+++|+.|++++|+++++|+.
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccCHH
Confidence            5555555555433222221  3455555555555544332 22555555555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.73  E-value=9.7e-17  Score=130.65  Aligned_cols=131  Identities=15%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceec--ccccCCCCCccEEEcCCCCCCc-ccCccc--cc--
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVD--DRAFRGVTNMDELDLSDNLLST-VPSLIY--IP--  126 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~--~~~~~~l~~l~~l~l~~n~l~~-~~~~~~--~~--  126 (195)
                      ++++.|++++|.+++..+..+.  .+++|+.|++++|.++.++  +..+..+++|+.|++++|.++. ++...+  ++  
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            3445555555555443333333  3444555555555544432  2234444455555555555443 443322  34  


Q ss_pred             --------------------ccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCC
Q psy14767        127 --------------------YLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL  186 (195)
Q Consensus       127 --------------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l  186 (195)
                                          +|+.|++++|+++.++...+ .+++|++|++++|+++++++..+..+++|+.+++++|++
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence                                45555555555554444333 445555555555555554444444555555555555554


Q ss_pred             C
Q psy14767        187 A  187 (195)
Q Consensus       187 ~  187 (195)
                      .
T Consensus       510 ~  510 (562)
T 3a79_B          510 D  510 (562)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=1.6e-17  Score=133.14  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=113.7

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCcc-------------------ccchhhhhccCCCCccEEEeecCCcce
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNIN-------------------VLQKEIFLQMGITNIQKLYLRKCKLEF   94 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~-------------------~~~~~~~~~~~l~~L~~l~l~~n~i~~   94 (195)
                      -+.++.+++.+...++ .-.++++.|++++|.++                   .++..     .+++|+.|++++|.++.
T Consensus        60 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~  134 (487)
T 3oja_A           60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITM  134 (487)
T ss_dssp             CCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCS
T ss_pred             CCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCC
Confidence            3556666666554332 11245555555555544                   43332     34678999999999999


Q ss_pred             ecccccCCCCCccEEEcCCCCCCcccCccc---ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecccccc
Q psy14767         95 VDDRAFRGVTNMDELDLSDNLLSTVPSLIY---IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFY  171 (195)
Q Consensus        95 ~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~---~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  171 (195)
                      +.+..+..+++|+.|++++|.++.++...+   +++|+.|++++|.++.+++  ...+++|+.|++++|.++++++. +.
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~  211 (487)
T 3oja_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQ  211 (487)
T ss_dssp             GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GG
T ss_pred             CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-Hc
Confidence            888888889999999999999997554433   6899999999999998865  33578999999999999998766 88


Q ss_pred             CCCCCcEEEcCCCCCCCCCCC
Q psy14767        172 GIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       172 ~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      .+++|+.|++++|.++++|+.
T Consensus       212 ~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          212 SAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             GGTTCSEEECTTSCCCEECTT
T ss_pred             CCCCccEEEecCCcCcccchh
Confidence            889999999999999988764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.7e-17  Score=123.62  Aligned_cols=148  Identities=16%  Similarity=0.228  Sum_probs=127.4

Q ss_pred             CceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      .-+.++++++.++.++. .-.++++.|++++|.++.++.  +.  .+++|+.|++++|.++.++  .+..+++|+.|+++
T Consensus        69 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLG  142 (291)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECC
T ss_pred             CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hc--cCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEcc
Confidence            35789999999998876 223789999999999998765  44  7899999999999999874  58889999999999


Q ss_pred             CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +|.++.++....+++|+.|++++|.++.+++  +..+++|+.|++++|.++++.  .+..+++|+.|++++|+++..+.
T Consensus       143 ~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence            9999988443338999999999999998876  788999999999999999974  38899999999999999877654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=2.4e-17  Score=135.35  Aligned_cols=153  Identities=17%  Similarity=0.221  Sum_probs=106.6

Q ss_pred             CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccC
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFR  101 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~  101 (195)
                      .||..|.|.... ...++|+++.++.+|..++++++.|++++|.++.++.      .+++|+.|++++|.++.++.    
T Consensus        30 ~~~~~~~c~~~~-l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~----   98 (622)
T 3g06_A           30 VVQKMRACLNNG-NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----   98 (622)
T ss_dssp             HHHHHHHHHHHC-CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred             cCcccccccCCC-CcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence            355667776432 5789999999999999999999999999999998776      24689999999999988765    


Q ss_pred             CCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccc--cc---------
Q psy14767        102 GVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE--AF---------  170 (195)
Q Consensus       102 ~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~---------  170 (195)
                      .+++|+.|++++|.++.++.  .+++|+.|++++|.++.++.    .+++|++|++++|++++++..  .+         
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~  172 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQ  172 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCC
Confidence            56788888888888887766  34556666666666665543    124555555555555543210  01         


Q ss_pred             -----cCCCCCcEEEcCCCCCCCCCC
Q psy14767        171 -----YGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       171 -----~~l~~l~~l~l~~n~l~~~~~  191 (195)
                           ..+++|+.|++++|.+++++.
T Consensus       173 l~~l~~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          173 LTSLPMLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCcccCCCCcEEECCCCCCCCCCC
Confidence                 112556666666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=125.79  Aligned_cols=149  Identities=17%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             eEEEecCCCcee-eCCCC----CCceeEEEeecCCccccch----hhhhccCCCCccEEEeecCCcceecccccCCCCCc
Q psy14767         36 RTVECIDRNFYT-IPEGI----DLDTQVLDLSSNNINVLQK----EIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNM  106 (195)
Q Consensus        36 ~~~~c~~~~l~~-~p~~~----~~~l~~L~l~~n~i~~~~~----~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l  106 (195)
                      +.++.+++.+.. .|..+    .++++.|++++|.++...+    ..+.  .+++|++|++++|.++.+++..|..+++|
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            445555555543 23332    2355555666655553211    1121  34555666666666555555555555555


Q ss_pred             cEEEcCCCCC----------------------------CcccCc---cc--ccccCeeecCCCcccccCCCcCCCC---C
Q psy14767        107 DELDLSDNLL----------------------------STVPSL---IY--IPYLKSINLAHNPIHQISSYSFQST---P  150 (195)
Q Consensus       107 ~~l~l~~n~l----------------------------~~~~~~---~~--~~~l~~l~l~~n~~~~~~~~~~~~~---~  150 (195)
                      +.|++++|++                            +.++..   .+  +++|++|++++|.++...+..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            5555555554                            322221   11  3455555555555555433233333   4


Q ss_pred             CCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCC
Q psy14767        151 GIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASL  189 (195)
Q Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~  189 (195)
                      +|++|++++|+++.++... .  ++|+.|++++|+++++
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSC
T ss_pred             cCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCC
Confidence            5666666666666553322 1  4566666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=8.6e-17  Score=123.39  Aligned_cols=148  Identities=17%  Similarity=0.244  Sum_probs=103.6

Q ss_pred             eEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767         36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n  114 (195)
                      +.++.+++.+..++. ...+.++.+++++|.+..+.+  +.  .+++|+.|++++|.++.+++  +..+++|+.+++++|
T Consensus       180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN  253 (347)
T ss_dssp             SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEccCCcccccccccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence            445555555544443 112455556666665555444  33  45678888888887777655  677788888888888


Q ss_pred             CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      .++.++....+++|+.|++++|.++.++  .+..+++|+.|++++|++++..+..+..+++|+.|++++|+++++++
T Consensus       254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          254 QISDINAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ccCCChhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            8777654333778888888888887763  46677888888888888888777778888888888888888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=2.2e-16  Score=130.41  Aligned_cols=135  Identities=16%  Similarity=0.287  Sum_probs=79.7

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCC-------CccEEEcCCCCCCcccCccc---
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-------NMDELDLSDNLLSTVPSLIY---  124 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~-------~l~~l~l~~n~l~~~~~~~~---  124 (195)
                      +++.|++++|.++.++...+.  .+++|+.|++++|.++.++...+....       +|+.|++++|.++.+|...+   
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            556666666666665555554  455666666666666655554443332       56666666666666555442   


Q ss_pred             ccccCeeecCCCcccccCCCcCCCCCCCCEEec------CCCcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767        125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM------SNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       125 ~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      +++|+.|++++|+++.++. .+..+++|+.|++      ++|++.+..+..+..+++|+.|++++|+++.+|..
T Consensus       512 l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~  584 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK  584 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred             CCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh
Confidence            5566666666666666433 4445666666666      33455555555666666777777777777655543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=1.3e-16  Score=131.76  Aligned_cols=157  Identities=18%  Similarity=0.239  Sum_probs=87.5

Q ss_pred             eEEEecCCCceeeCCCCC----CceeEEEeecCCccccchhhhh-----ccCCCCccEEEeecCCcceecccccCCCCCc
Q psy14767         36 RTVECIDRNFYTIPEGID----LDTQVLDLSSNNINVLQKEIFL-----QMGITNIQKLYLRKCKLEFVDDRAFRGVTNM  106 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~~~----~~l~~L~l~~n~i~~~~~~~~~-----~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l  106 (195)
                      +.++.+++.++.+|..+.    ++++.|++++|.++...+..+.     .+.+++|+.|++++|.++.+++..+..+++|
T Consensus       380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence            444555555555554332    1455555555555443332221     0023456666666666666555555556666


Q ss_pred             cEEEcCCCCCCcccCccc--cc-------ccCeeecCCCcccccCCCcC-CCCCCCCEEecCCCcceeeccccccCCCCC
Q psy14767        107 DELDLSDNLLSTVPSLIY--IP-------YLKSINLAHNPIHQISSYSF-QSTPGIRYIDMSNCQIHTIYSEAFYGIDKI  176 (195)
Q Consensus       107 ~~l~l~~n~l~~~~~~~~--~~-------~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l  176 (195)
                      +.|++++|.++.+|...+  ..       +|+.|++++|.++.++...+ ..+++|+.|++++|+++++ +..+..+++|
T Consensus       460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L  538 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTL  538 (636)
T ss_dssp             SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSC
T ss_pred             CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCC
Confidence            666666666666665554  21       66677777777666554322 2566777777777777664 4445566777


Q ss_pred             cEEEc------CCCCCCCCCCCC
Q psy14767        177 DTLKL------NGNKLASLKPRT  193 (195)
Q Consensus       177 ~~l~l------~~n~l~~~~~~~  193 (195)
                      +.|++      ++|++.+..|..
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTT
T ss_pred             CEEECCCCcccccCcccccChHH
Confidence            77777      345555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=1.6e-16  Score=129.23  Aligned_cols=137  Identities=12%  Similarity=0.251  Sum_probs=86.4

Q ss_pred             CceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      ..+.++++++.++.+| ...++++.|++++|.++.++.  +.  +  +|+.|++++|.++.+++    .+++|+.|++++
T Consensus        81 ~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~  149 (571)
T 3cvr_A           81 QITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN  149 (571)
T ss_dssp             TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred             CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence            3577888888888888 667888888888888888766  43  2  67777777777777654    356667777777


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC-------cEEEcCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI-------DTLKLNGNKL  186 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l-------~~l~l~~n~l  186 (195)
                      |.++.+|.  .+++|+.|++++|.++.++.  +.  ++|+.|++++|+|+.++.  +..  +|       +.|++++|++
T Consensus       150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             SCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCC
T ss_pred             CccCcCCC--cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcc
Confidence            77666555  34556666666666655544  32  455555555555554433  222  33       5555555555


Q ss_pred             CCCCC
Q psy14767        187 ASLKP  191 (195)
Q Consensus       187 ~~~~~  191 (195)
                      +.+|+
T Consensus       220 ~~lp~  224 (571)
T 3cvr_A          220 THIPE  224 (571)
T ss_dssp             CCCCG
T ss_pred             eecCH
Confidence            55443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1e-16  Score=131.35  Aligned_cols=146  Identities=16%  Similarity=0.228  Sum_probs=74.6

Q ss_pred             eEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767         36 RTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n  114 (195)
                      +.++++++.+..+|. .-.++++.|+|++|.++.++  .+.  .+++|+.|++++|.+..++  .+..+++|+.|++++|
T Consensus        68 ~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           68 TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNN  141 (605)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TST--TCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSS
T ss_pred             CEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhc--cCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCC
Confidence            344444444444433 11134555555555554433  122  3455555555555555442  2445555555555555


Q ss_pred             CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      .++.++....+++|+.|++++|.++.+++  +..+++|+.|+|++|++++++  .+..+++|+.|++++|++++.|.
T Consensus       142 ~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          142 KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred             ccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcc
Confidence            55554222225555666666665555544  555566666666666665542  35556666666666666555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.70  E-value=1.3e-16  Score=122.38  Aligned_cols=146  Identities=14%  Similarity=0.206  Sum_probs=124.2

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      -+.+++.++.+..++. ...++++.|++++|.++.+++  +.  .+++|+.|++++|.++.++  .+..+++|+.+++++
T Consensus       201 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~  274 (347)
T 4fmz_A          201 LHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LA--NLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGS  274 (347)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             cceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hh--cCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccC
Confidence            5678888888887664 233789999999999998877  44  7899999999999999873  588899999999999


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      |.++.++....+++|+.|++++|.++...+..+..+++|++|++++|+++++.+  +..+++|+.|++++|+++.
T Consensus       275 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          275 NQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             CccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence            999988654448999999999999998888788889999999999999999866  7889999999999999863

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.69  E-value=7e-17  Score=112.64  Aligned_cols=128  Identities=14%  Similarity=0.265  Sum_probs=105.6

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      .+++.|++++|.++.++. ...  ..++|+.|++++|.++.+  ..+..+++|+.|++++|.++.++...+  +++|+.|
T Consensus        19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            578999999999998743 222  234899999999999988  468889999999999999998887664  8899999


Q ss_pred             ecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccc---cccCCCCCcEEEcCCCCC
Q psy14767        132 NLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSE---AFYGIDKIDTLKLNGNKL  186 (195)
Q Consensus       132 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~l~~l~l~~n~l  186 (195)
                      ++++|.++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.|++++|..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            999999988765 4677889999999999999877543   578889999999988864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=5.6e-16  Score=131.40  Aligned_cols=135  Identities=14%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCC-------CCccEEEcCCCCCCcccCccc---
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGV-------TNMDELDLSDNLLSTVPSLIY---  124 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l-------~~l~~l~l~~n~l~~~~~~~~---  124 (195)
                      +++.|++++|.++.++...+.  .+++|+.|++++|.++.++...+...       ++|+.|++++|.++.+|...+   
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~--~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHH--TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred             CcCEEEccCCcCCccCHHHHc--cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence            566666666666666665554  45667777777777666655444332       266777777777766665542   


Q ss_pred             ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC------CcceeeccccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767        125 IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN------CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       125 ~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      +++|+.|++++|.++.++. .+..+++|+.|++++      |++.+..+..+..+++|+.|++++|+++.+|..
T Consensus       752 l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~  824 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK  824 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred             CCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence            5667777777777666533 445666777777755      555555566666777777777777777655553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=2.8e-16  Score=111.54  Aligned_cols=129  Identities=14%  Similarity=0.227  Sum_probs=111.0

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcc-cCccc-ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTV-PSLIY-IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~-~~~~~-~~~l~~l  131 (195)
                      ++++.|++++|.++.++.  +.  .+++|+.|++++|.++.++  .+..+++|+.|++++|.++.. +.... +++|+.|
T Consensus        44 ~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTG--IE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEESSCCSCCTT--GG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             CCccEEeccCCCccChHH--Hh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            579999999999998773  44  6789999999999887764  688899999999999999863 33333 8999999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCc-ceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++++|.++...+..+..+++|++|++++|. ++.++  .+..+++|+.|++++|++++++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH
Confidence            999999998666678899999999999998 88874  5889999999999999999875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=6.5e-17  Score=122.50  Aligned_cols=148  Identities=21%  Similarity=0.155  Sum_probs=107.2

Q ss_pred             ceEEEecCCCceeeCCCC---CCceeEEEeecCCccc---cchhh-hhccCCCCccEEEeecCCcceeccc---ccCCCC
Q psy14767         35 KRTVECIDRNFYTIPEGI---DLDTQVLDLSSNNINV---LQKEI-FLQMGITNIQKLYLRKCKLEFVDDR---AFRGVT  104 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~---~~~l~~L~l~~n~i~~---~~~~~-~~~~~l~~L~~l~l~~n~i~~~~~~---~~~~l~  104 (195)
                      -+.++.+++.+..+|...   .++++.|++++|.+..   ++... +.  .+++|++|++++|.++.+++.   .+..++
T Consensus       147 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          147 LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH--KFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT--SSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh--cCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            355666666666655432   2567777777776653   22222 12  456777777777777655432   245678


Q ss_pred             CccEEEcCCCCCCcc-cCccc----ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEE
Q psy14767        105 NMDELDLSDNLLSTV-PSLIY----IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTL  179 (195)
Q Consensus       105 ~l~~l~l~~n~l~~~-~~~~~----~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l  179 (195)
                      +|+.|++++|+++.. |....    .++|+.|++++|+++.++...+   ++|++|++++|++++++.  +..+++|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence            999999999999976 54443    3799999999999998876432   799999999999998743  6788999999


Q ss_pred             EcCCCCCCCC
Q psy14767        180 KLNGNKLASL  189 (195)
Q Consensus       180 ~l~~n~l~~~  189 (195)
                      ++++|++++.
T Consensus       300 ~L~~N~l~~~  309 (310)
T 4glp_A          300 TLDGNPFLVP  309 (310)
T ss_dssp             ECSSTTTSCC
T ss_pred             ECcCCCCCCC
Confidence            9999999863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=2.6e-16  Score=133.76  Aligned_cols=156  Identities=24%  Similarity=0.279  Sum_probs=128.0

Q ss_pred             CceEEEecCCCceeeCC-CCC--CceeEEEeecC-CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEE
Q psy14767         34 GKRTVECIDRNFYTIPE-GID--LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDEL  109 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~-~~~--~~l~~L~l~~n-~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l  109 (195)
                      ..+.++.+++.++.++. .+.  ++++.|++++| .+..+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            35789999999998754 443  68999999999 45567788887  88999999999999999999999999999999


Q ss_pred             EcCCCCCCc-ccCc-cc--ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccccccCC--CCCcEEEcC
Q psy14767        110 DLSDNLLST-VPSL-IY--IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSEAFYGI--DKIDTLKLN  182 (195)
Q Consensus       110 ~l~~n~l~~-~~~~-~~--~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~l~~l~l~  182 (195)
                      ++++|.++. ++.. .+  +++|++|++++|.++.+.+ ..+..+++|++|++++|.++++.+..+..+  ++|+.|+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            999999985 3443 23  8999999999999988764 468899999999999999988776666655  566667777


Q ss_pred             CCCCCCCCC
Q psy14767        183 GNKLASLKP  191 (195)
Q Consensus       183 ~n~l~~~~~  191 (195)
                      +|.+++..+
T Consensus       183 ~n~l~~~~~  191 (844)
T 3j0a_A          183 ANSLYSRVS  191 (844)
T ss_dssp             CSBSCCCCC
T ss_pred             CCccccccc
Confidence            666665444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.68  E-value=1.4e-16  Score=122.29  Aligned_cols=110  Identities=22%  Similarity=0.366  Sum_probs=99.5

Q ss_pred             CCCCC-eecccCCceEEEecCC-CceeeCCCCC--CceeEEEeec-CCccccchhhhhccCCCCccEEEeecCCcceecc
Q psy14767         23 CPLGC-SCKWKAGKRTVECIDR-NFYTIPEGID--LDTQVLDLSS-NNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD   97 (195)
Q Consensus        23 c~~~c-~c~~~~~~~~~~c~~~-~l~~~p~~~~--~~l~~L~l~~-n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~   97 (195)
                      ||..| .|.    ...++|+++ +++.+|. ++  .+++.|+|++ |.++.+++..|.  ++++|+.|++++|.|+.+++
T Consensus         1 cp~~c~~C~----~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            1 CPDACCPHG----SSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CCSSSCCSS----SSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred             CCCcCcccc----CCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence            89999 998    367899998 9999999 76  4699999996 999999998887  88999999999999999999


Q ss_pred             cccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCccc
Q psy14767         98 RAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIH  139 (195)
Q Consensus        98 ~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~  139 (195)
                      .+|.++++|+.|+|++|.++.++...+ ...|+.|++.+|.+.
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            999999999999999999999998877 444999999999876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=3.3e-17  Score=111.17  Aligned_cols=126  Identities=21%  Similarity=0.303  Sum_probs=105.3

Q ss_pred             CCceeEEEeecCCcc--ccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCc-ccCccc-cccc
Q psy14767         53 DLDTQVLDLSSNNIN--VLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLST-VPSLIY-IPYL  128 (195)
Q Consensus        53 ~~~l~~L~l~~n~i~--~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~-~~~~~~-~~~l  128 (195)
                      +++++.|++++|.++  .++. .+.  .+++|+.|++++|.++.+  ..+..+++|+.|++++|.++. ++.... +++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CccCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            357899999999998  5554 444  678999999999999988  578889999999999999997 555444 8899


Q ss_pred             CeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeecc---ccccCCCCCcEEEcCC
Q psy14767        129 KSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYS---EAFYGIDKIDTLKLNG  183 (195)
Q Consensus       129 ~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~l~~  183 (195)
                      +.|++++|.++.++ +..+..+++|++|++++|.++++++   ..+..+++|+.|++++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999998875 2567888999999999999998876   5788899999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=3.8e-16  Score=128.02  Aligned_cols=146  Identities=19%  Similarity=0.347  Sum_probs=127.4

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      .+.+++.++.+..+|. .-.++++.|+|++|.++.+++  +.  .+++|+.|++++|.++.++  .+..+++|+.|++++
T Consensus        45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred             CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence            4678888888888774 223799999999999999877  44  7899999999999999875  688999999999999


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      |.++.++....+++|+.|++++|.++.+  ..+..+++|+.|+|++|.++++.+  +..+++|+.|++++|++++++
T Consensus       119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          119 NGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence            9999876544489999999999999988  367889999999999999999866  889999999999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.65  E-value=1.4e-15  Score=105.56  Aligned_cols=106  Identities=22%  Similarity=0.346  Sum_probs=92.1

Q ss_pred             eeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         56 TQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        56 l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      .+.+++++|.++.++....     ++++.|++++|.++.+++..|.++++|+.|++++|+++.++...+  +++|+.|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~-----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccCccCC-----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4578999999999876542     578999999999999988889999999999999999998888776  889999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                      ++|+++.+++..|..+++|++|++++|.++...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999999988888888899999999999887553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=2e-15  Score=120.27  Aligned_cols=127  Identities=20%  Similarity=0.321  Sum_probs=70.8

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA  134 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~  134 (195)
                      +++.|++++|.++.+++  +.  .+++|+.|++++|.++.+++  +..+++|+.|++++|.++.++....+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  339 (466)
T 1o6v_A          266 KLTELKLGANQISNISP--LA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY  339 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCccCcccc--cc--CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence            44444444444444433  22  34455555555555554433  44455555555555555544442225566666666


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +|.+++++  .+..+++|+.|++++|++++..+  +..+++|+.|++++|+++++|.
T Consensus       340 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          340 NNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCB
T ss_pred             CCccCCch--hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCch
Confidence            66665552  45566667777777777666654  5666677777777777666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=4.3e-16  Score=132.12  Aligned_cols=151  Identities=15%  Similarity=0.216  Sum_probs=106.1

Q ss_pred             ceEEEecCCCcee------------------eCCCCC----CceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-
Q psy14767         35 KRTVECIDRNFYT------------------IPEGID----LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-   91 (195)
Q Consensus        35 ~~~~~c~~~~l~~------------------~p~~~~----~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-   91 (195)
                      -+.++.+++.+..                  +|..+.    ++++.|++++|.+....+..+.  .+++|+.|++++|. 
T Consensus       450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNRG  527 (876)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCTT
T ss_pred             CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCCC
Confidence            5678888888887                  888764    6889999999887765555555  67788888888887 


Q ss_pred             cce-eccccc-------CCCCCccEEEcCCCCCCcccC--ccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCC
Q psy14767         92 LEF-VDDRAF-------RGVTNMDELDLSDNLLSTVPS--LIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC  160 (195)
Q Consensus        92 i~~-~~~~~~-------~~l~~l~~l~l~~n~l~~~~~--~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  160 (195)
                      ++. ..|..+       ..+++|+.|++++|.++.+|.  ... +++|+.|++++|.++.++  .+..+++|+.|++++|
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCC
Confidence            665 223323       334477788888887777776  333 777777777777777555  5667777777777777


Q ss_pred             cceeeccccccCCCC-CcEEEcCCCCCCCCC
Q psy14767        161 QIHTIYSEAFYGIDK-IDTLKLNGNKLASLK  190 (195)
Q Consensus       161 ~l~~~~~~~~~~l~~-l~~l~l~~n~l~~~~  190 (195)
                      +++.+ +..+..+++ |+.|++++|+++.+|
T Consensus       606 ~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          606 QIEEI-PEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             CCSCC-CTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             ccccc-hHHHhhccccCCEEECcCCCCCcCc
Confidence            77744 334666666 777777777776554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=2e-15  Score=120.31  Aligned_cols=127  Identities=23%  Similarity=0.395  Sum_probs=74.9

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA  134 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~  134 (195)
                      +++.|++++|.++.+++  +.  .+++|+.|++++|.++.+++  +..+++|+.|++++|.++.++....+++|+.|+++
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hh--cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECc
Confidence            44444455444444433  22  34555555555555555443  45555666666666665555442225666666666


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +|.++++.+  +..+++|+.|++++|+++++  ..+..+++|+.|++++|++++++|
T Consensus       318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            666665544  45566777777777777665  246677777777777777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=1.1e-16  Score=133.79  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=78.1

Q ss_pred             hhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCC
Q psy14767         71 KEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQST  149 (195)
Q Consensus        71 ~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~  149 (195)
                      +..+.  .++.|+.|++++|.+..+++..+ .+++|+.|+|++|.++.+|.... +++|+.|++++|.++.++. .+..+
T Consensus       217 ~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l  292 (727)
T 4b8c_D          217 KDSKY--DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA-ELGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS-SGGGG
T ss_pred             hhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh-hhcCC
Confidence            44444  56677777777777776655433 67777777777777777765544 7777777777777776643 56667


Q ss_pred             CCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        150 PGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      ++|++|+|++|.++.++.. ++.+++|+.|++++|++++.++
T Consensus       293 ~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             TTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence            7777777777777766443 7777777777777777776554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=1e-14  Score=116.01  Aligned_cols=148  Identities=16%  Similarity=0.172  Sum_probs=98.0

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccc----------------
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----------------   98 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~----------------   98 (195)
                      -+.++++++.++.+|-.-.++++.|++++|.++.++   +.  .+++|++|++++|.++.++-.                
T Consensus        87 L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---~~--~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A           87 LTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---VS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             CSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---CT--TCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred             CCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---CC--CCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence            466777777777766433467777777777777653   33  556777777777776654210                


Q ss_pred             ---ccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCC
Q psy14767         99 ---AFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK  175 (195)
Q Consensus        99 ---~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  175 (195)
                         .+..+++|+.|++++|.++.++ ...+++|+.|++++|.++.++   +..+++|+.|++++|++++++   +..+++
T Consensus       162 ~~~~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~  234 (457)
T 3bz5_A          162 TKLDVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQ  234 (457)
T ss_dssp             CCCCCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTT
T ss_pred             cccccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCC
Confidence               2344455666666666666554 112566777777777776652   566778888888888888864   667788


Q ss_pred             CcEEEcCCCCCCCCCCCCC
Q psy14767        176 IDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       176 l~~l~l~~n~l~~~~~~~~  194 (195)
                      |+.|++++|+++++++..+
T Consensus       235 L~~L~l~~N~l~~~~~~~l  253 (457)
T 3bz5_A          235 LTYFDCSVNPLTELDVSTL  253 (457)
T ss_dssp             CSEEECCSSCCSCCCCTTC
T ss_pred             CCEEEeeCCcCCCcCHHHC
Confidence            8888888888888776543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.2e-15  Score=114.10  Aligned_cols=91  Identities=24%  Similarity=0.462  Sum_probs=79.2

Q ss_pred             CCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCC-EEecCCCcceeeccccccCCCCCcEE
Q psy14767        103 VTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYGIDKIDTL  179 (195)
Q Consensus       103 l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~l  179 (195)
                      +++|+.+++++|.++.++..+|  +.+|+.+.+.+| ++.++..+|.++++|+ .+++.+ .++.+.+.+|.++.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            4678888888888888888888  778999999887 8888888999999998 999988 7888888899999999999


Q ss_pred             EcCCCCCCCCCCCCCC
Q psy14767        180 KLNGNKLASLKPRTWS  195 (195)
Q Consensus       180 ~l~~n~l~~~~~~~~~  195 (195)
                      ++++|.++.+++.+|.
T Consensus       303 ~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          303 LATGDKITTLGDELFG  318 (329)
T ss_dssp             EECSSCCCEECTTTTC
T ss_pred             EeCCCccCccchhhhc
Confidence            9999999999888774

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=3.1e-15  Score=104.12  Aligned_cols=105  Identities=17%  Similarity=0.324  Sum_probs=93.1

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecC
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLA  134 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~  134 (195)
                      +.+++++|.++.++....     ++|+.|++++|.++.+++..|.++++|+.|++++|+++.++...+  +++|+.|+++
T Consensus        15 ~~l~~~~n~l~~iP~~~~-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCCccCCCcC-----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            578999999998887542     679999999999999998899999999999999999999988775  8899999999


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                      +|.++.+++..+..+++|++|++++|.+....
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99999998877888999999999999987554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.1e-15  Score=105.63  Aligned_cols=129  Identities=17%  Similarity=0.194  Sum_probs=111.0

Q ss_pred             ceEEEecCCCce--eeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEE
Q psy14767         35 KRTVECIDRNFY--TIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELD  110 (195)
Q Consensus        35 ~~~~~c~~~~l~--~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~  110 (195)
                      .+.++.+++.+.  .+|..+.  ++++.|++++|.++.+  ..+.  .+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            578999999998  7887654  6899999999999988  4455  789999999999999986666777799999999


Q ss_pred             cCCCCCCcccC--ccc-ccccCeeecCCCcccccCC---CcCCCCCCCCEEecCCCcceeecc
Q psy14767        111 LSDNLLSTVPS--LIY-IPYLKSINLAHNPIHQISS---YSFQSTPGIRYIDMSNCQIHTIYS  167 (195)
Q Consensus       111 l~~n~l~~~~~--~~~-~~~l~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~  167 (195)
                      +++|.++.++.  ... +++|+.|++++|.++.+++   ..+..+++|++|++++|.+..++.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999998764  333 8999999999999998876   578889999999999999887754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.2e-16  Score=133.75  Aligned_cols=134  Identities=19%  Similarity=0.237  Sum_probs=110.2

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSIN  132 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~  132 (195)
                      ..++.|+|++|.+..++...+   .+++|+.|++++|.++.++ ..|..+++|+.|+|++|.++.+|.... +++|+.|+
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            579999999999999988887   6899999999999999765 578999999999999999999988766 89999999


Q ss_pred             cCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCC-CCcEEEcCCCCCCCCCCC
Q psy14767        133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGID-KIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       133 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~l~l~~n~l~~~~~~  192 (195)
                      +++|.++.++.. |..+++|+.|+|++|.+++..+..+.... ....+++++|.+++..|.
T Consensus       300 L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          300 FFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            999999988764 89999999999999999987666553321 112245555555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.61  E-value=2e-14  Score=114.34  Aligned_cols=144  Identities=18%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhcc---------------CCCCccEEEeecCCcceecccc
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQM---------------GITNIQKLYLRKCKLEFVDDRA   99 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~---------------~l~~L~~l~l~~n~i~~~~~~~   99 (195)
                      .+.+++++++++.+|. ++++++.|++++|.+++++... ..+               ..++|++|++++|.++.++  .
T Consensus        73 l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~  148 (454)
T 1jl5_A           73 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--E  148 (454)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCC-TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--C
T ss_pred             CCEEEecCCccccCCC-CcCCCCEEEccCCcCCcccccc-CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--c
Confidence            3667777777777766 4566777777777776654311 000               0024445555555544433  2


Q ss_pred             cCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEE
Q psy14767        100 FRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTL  179 (195)
Q Consensus       100 ~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l  179 (195)
                      |.++++|+.+++++|.++.+|..  ..+|+.|++++|.++.++  .+..+++|++|++++|++++++..    ..+|+.|
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L  220 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESI  220 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEE
T ss_pred             cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEE
Confidence            44555555555555555444332  234555555555555443  244555555555555555544221    1355555


Q ss_pred             EcCCCCCCCCC
Q psy14767        180 KLNGNKLASLK  190 (195)
Q Consensus       180 ~l~~n~l~~~~  190 (195)
                      ++++|.++++|
T Consensus       221 ~l~~n~l~~lp  231 (454)
T 1jl5_A          221 VAGNNILEELP  231 (454)
T ss_dssp             ECCSSCCSSCC
T ss_pred             ECcCCcCCccc
Confidence            55555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.60  E-value=3.4e-14  Score=112.94  Aligned_cols=140  Identities=15%  Similarity=0.256  Sum_probs=83.3

Q ss_pred             eEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCC
Q psy14767         36 RTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL  115 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~  115 (195)
                      +.++++++.+..+|. .+++++.|++++|.++.++  .+.  .+++|++|++++|.++.++..    ..+|+.|++++|.
T Consensus       114 ~~L~l~~n~l~~l~~-~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~  184 (454)
T 1jl5_A          114 KSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQ  184 (454)
T ss_dssp             CEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC
T ss_pred             cEEECCCCccCcccC-CCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCCC----cccccEEECcCCc
Confidence            445555555554443 2357788888888888766  254  678888888888888776432    2467777777777


Q ss_pred             CCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        116 LSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       116 l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++.++....+++|+.|++++|.+++++..    .++|++|++++|.++.++  .+..+++|+.|++++|++++++
T Consensus       185 l~~l~~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          185 LEELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred             CCcCccccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc
Confidence            77766322266666666666666554431    134555555555555443  1445555555555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.59  E-value=5.2e-14  Score=112.00  Aligned_cols=143  Identities=17%  Similarity=0.216  Sum_probs=107.2

Q ss_pred             CceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         34 GKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      .-+.++++++.++.+|-.-.++++.|++++|.++.++   +.  .+++|++|++++|.++.++   +..+++|+.|++++
T Consensus        65 ~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           65 GLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR  136 (457)
T ss_dssp             TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTT
T ss_pred             CCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCC
Confidence            3578999999999987555589999999999999874   44  7889999999999999873   78889999999999


Q ss_pred             CCCCcccCcc-------------------c--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767        114 NLLSTVPSLI-------------------Y--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG  172 (195)
Q Consensus       114 n~l~~~~~~~-------------------~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  172 (195)
                      |.++.++...                   +  +++|+.|++++|.++.++   +..+++|+.|++++|+++++   .++.
T Consensus       137 N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~  210 (457)
T 3bz5_A          137 NTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQ  210 (457)
T ss_dssp             SCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTT
T ss_pred             CccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---cccc
Confidence            9988754110                   1  345555555555555543   45556666777777766665   2566


Q ss_pred             CCCCcEEEcCCCCCCCCC
Q psy14767        173 IDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       173 l~~l~~l~l~~n~l~~~~  190 (195)
                      +++|+.|++++|+++++|
T Consensus       211 l~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC
T ss_pred             CCCCCEEECcCCcccccC
Confidence            777888888888887765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.59  E-value=5.6e-15  Score=121.39  Aligned_cols=81  Identities=21%  Similarity=0.339  Sum_probs=62.2

Q ss_pred             CCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCC
Q psy14767        104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG  183 (195)
Q Consensus       104 ~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~  183 (195)
                      ++|+.|++++|.++.+|  ..+++|+.|++++|.++.++.    .+++|+.|++++|+++.++ ..+..+++|+.|++++
T Consensus       221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEG  293 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCS
T ss_pred             CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecC
Confidence            56777777777777766  225778888888888887765    4578888999999888774 5588888999999999


Q ss_pred             CCCCCCCC
Q psy14767        184 NKLASLKP  191 (195)
Q Consensus       184 n~l~~~~~  191 (195)
                      |++++.++
T Consensus       294 N~l~~~~~  301 (622)
T 3g06_A          294 NPLSERTL  301 (622)
T ss_dssp             CCCCHHHH
T ss_pred             CCCCCcCH
Confidence            98876543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.6e-15  Score=101.03  Aligned_cols=113  Identities=14%  Similarity=0.212  Sum_probs=95.8

Q ss_pred             CCCccEEEeecCCcc-eecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEec
Q psy14767         79 ITNIQKLYLRKCKLE-FVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM  157 (195)
Q Consensus        79 l~~L~~l~l~~n~i~-~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l  157 (195)
                      .++++.|++++|.++ ...+..+..+++|+.|++++|.++.+.....+++|+.|++++|.++...+..+..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            467999999999998 3334578889999999999999998822222899999999999999855556666899999999


Q ss_pred             CCCcceeec-cccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        158 SNCQIHTIY-SEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       158 ~~n~l~~~~-~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      ++|++++++ +..+..+++|+.|++++|+++++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            999999874 3678999999999999999998876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=7.7e-15  Score=102.22  Aligned_cols=112  Identities=18%  Similarity=0.265  Sum_probs=96.0

Q ss_pred             CCCCccEEEeecCCcceecccccCCCC-CccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEe
Q psy14767         78 GITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYID  156 (195)
Q Consensus        78 ~l~~L~~l~l~~n~i~~~~~~~~~~l~-~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~  156 (195)
                      ...+|+.|++++|.++.++  .+..+. +|+.|++++|.++.++....+++|+.|++++|.++.+++..+..+++|++|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            5678999999999999874  344554 9999999999999884333389999999999999999877678899999999


Q ss_pred             cCCCcceeecc-ccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        157 MSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       157 l~~n~l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +++|+++.++. ..+..+++|+.|++++|+++.++.
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            99999988764 468899999999999999988765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.6e-14  Score=110.22  Aligned_cols=68  Identities=18%  Similarity=0.352  Sum_probs=59.4

Q ss_pred             cccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCc-EEEcCCCCCCCCCCCCCC
Q psy14767        126 PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKID-TLKLNGNKLASLKPRTWS  195 (195)
Q Consensus       126 ~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~-~l~l~~n~l~~~~~~~~~  195 (195)
                      ++|+.+++.+|+++.++..+|.++++|+.+++.+| ++.+...+|.++.+|+ .+++.+ .++.+++.+|.
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence            46888888888899999999999999999999988 8888888999999998 999988 78888887773

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=1.2e-14  Score=118.37  Aligned_cols=108  Identities=18%  Similarity=0.302  Sum_probs=98.5

Q ss_pred             CccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCC
Q psy14767         81 NIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSN  159 (195)
Q Consensus        81 ~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  159 (195)
                      .|+.|++++|.++.++.  +..+++|+.|++++|.++.+|.... +++|+.|++++|.+++++  .+..+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence            57889999999999853  8899999999999999999987666 899999999999999976  688999999999999


Q ss_pred             Ccceeec-cccccCCCCCcEEEcCCCCCCCCCCC
Q psy14767        160 CQIHTIY-SEAFYGIDKIDTLKLNGNKLASLKPR  192 (195)
Q Consensus       160 n~l~~~~-~~~~~~l~~l~~l~l~~n~l~~~~~~  192 (195)
                      |+++++. +..++.+++|+.|++++|+++++++.
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            9999997 78899999999999999999998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=1.7e-14  Score=117.57  Aligned_cols=122  Identities=19%  Similarity=0.278  Sum_probs=105.1

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA  134 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~  134 (195)
                      .++.|++++|.++.++.  +.  .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+|....+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~--~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDGVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCcC--cc--ccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECC
Confidence            57889999999999875  55  6889999999999999774 5799999999999999999998832239999999999


Q ss_pred             CCcccccC-CCcCCCCCCCCEEecCCCcceeeccc---cccCCCCCcEEEc
Q psy14767        135 HNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIYSE---AFYGIDKIDTLKL  181 (195)
Q Consensus       135 ~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~l~~l~l  181 (195)
                      +|.++++. +..+..+++|+.|++++|.+++.++.   .+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999996 77889999999999999999988653   2445788998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=1.8e-14  Score=111.34  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             CceeEEEeecCCccccchhhhhcc--CC-CCccEEEeecCCcceeccccc----CC-CCCccEEEcCCCCCCcccCccc-
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQM--GI-TNIQKLYLRKCKLEFVDDRAF----RG-VTNMDELDLSDNLLSTVPSLIY-  124 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~--~l-~~L~~l~l~~n~i~~~~~~~~----~~-l~~l~~l~l~~n~l~~~~~~~~-  124 (195)
                      ++++.|++++|.++......+...  .+ ++|+.|++++|.++...+..+    .. ..+|+.|++++|.++....... 
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            345555555555554443322200  12 455666666665555443322    22 1356666666666553221111 


Q ss_pred             -----c-cccCeeecCCCcccccCCCc----CCCC-CCCCEEecCCCcceeec----cccccC-CCCCcEEEcCCCCCCC
Q psy14767        125 -----I-PYLKSINLAHNPIHQISSYS----FQST-PGIRYIDMSNCQIHTIY----SEAFYG-IDKIDTLKLNGNKLAS  188 (195)
Q Consensus       125 -----~-~~l~~l~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~----~~~~~~-l~~l~~l~l~~n~l~~  188 (195)
                           . ++|+.|++++|.++...+..    +... ++|++|++++|.+++..    +..+.. .++|+.|++++|++++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence                 2 26677777777666554322    2223 47777777777777632    223333 3578888888888777


Q ss_pred             CCC
Q psy14767        189 LKP  191 (195)
Q Consensus       189 ~~~  191 (195)
                      .+.
T Consensus       240 ~~~  242 (362)
T 3goz_A          240 PSL  242 (362)
T ss_dssp             CCH
T ss_pred             HHH
Confidence            654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=1.9e-16  Score=112.44  Aligned_cols=140  Identities=15%  Similarity=0.224  Sum_probs=108.2

Q ss_pred             CceeeCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccC
Q psy14767         44 NFYTIPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPS  121 (195)
Q Consensus        44 ~l~~~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  121 (195)
                      .++.+|..+.  ++++.|++++|.++.++  .+.  .+++|+.|++++|.++.++. .+..+++|+.|++++|.++.++.
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~--~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~~  110 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS--SLS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG  110 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC--CHH--HHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc--ccc--cCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCCc
Confidence            4555554433  68999999999999876  444  67899999999999987753 55667889999999999998873


Q ss_pred             cccccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeeccc----------cccCCCCCcEEEcCCCCCCCCC
Q psy14767        122 LIYIPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSE----------AFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       122 ~~~~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ...+++|+.|++++|.++.++. ..+..+++|++|++++|.+++..+.          .+..+++|+.||  +|+++...
T Consensus       111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e  188 (198)
T 1ds9_A          111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE  188 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred             cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence            2228899999999999887654 4677889999999999998766443          367888999876  77776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=5.4e-13  Score=102.32  Aligned_cols=103  Identities=21%  Similarity=0.389  Sum_probs=92.0

Q ss_pred             EEEeecC-CccccchhhhhccCCCCccEEEeec-CCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         58 VLDLSSN-NINVLQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        58 ~L~l~~n-~i~~~~~~~~~~~~l~~L~~l~l~~-n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      .++.+++ +++.+|.  +.  .+++|+.|++++ |.++.+++..|.++.+|+.|+|++|+++.++...+  +++|+.|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCTTTTT--SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCCccCC--CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            4688888 8999888  55  678999999996 99999999999999999999999999999988776  899999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI  165 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  165 (195)
                      ++|+++.+++..+..++ |+.|++++|.+...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999999988887765 99999999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=3.1e-14  Score=109.98  Aligned_cols=155  Identities=19%  Similarity=0.263  Sum_probs=106.2

Q ss_pred             ceEEEecCCCceeeCC--------CCCCceeEEEeecCCccccchhhhhcc--C-CCCccEEEeecCCcceecccc----
Q psy14767         35 KRTVECIDRNFYTIPE--------GIDLDTQVLDLSSNNINVLQKEIFLQM--G-ITNIQKLYLRKCKLEFVDDRA----   99 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~--------~~~~~l~~L~l~~n~i~~~~~~~~~~~--~-l~~L~~l~l~~n~i~~~~~~~----   99 (195)
                      -+.++.+++.++..+.        ..+.+++.|++++|.++......+...  . .++|++|++++|.++...+..    
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            4678888888777653        122378888888888887766555410  1 167888888888887766543    


Q ss_pred             cCCC-CCccEEEcCCCCCCcccCccc-------ccccCeeecCCCcccccCCC----cCCCCC-CCCEEecCCCcceeec
Q psy14767        100 FRGV-TNMDELDLSDNLLSTVPSLIY-------IPYLKSINLAHNPIHQISSY----SFQSTP-GIRYIDMSNCQIHTIY  166 (195)
Q Consensus       100 ~~~l-~~l~~l~l~~n~l~~~~~~~~-------~~~l~~l~l~~n~~~~~~~~----~~~~~~-~L~~L~l~~n~l~~~~  166 (195)
                      +..+ ++|+.|++++|.++..+...+       ..+|+.|++++|.++.....    .+...+ +|++|++++|++++..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            3334 788888888888876655432       24788888888888753322    223333 7889999999888765


Q ss_pred             cc----cccCC-CCCcEEEcCCCCCCCC
Q psy14767        167 SE----AFYGI-DKIDTLKLNGNKLASL  189 (195)
Q Consensus       167 ~~----~~~~l-~~l~~l~l~~n~l~~~  189 (195)
                      +.    .+... ++|+.|++++|.+++.
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence            53    33444 5889999999988763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.3e-16  Score=113.31  Aligned_cols=129  Identities=22%  Similarity=0.325  Sum_probs=106.1

Q ss_pred             ceeEEEeecC--CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCee
Q psy14767         55 DTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSI  131 (195)
Q Consensus        55 ~l~~L~l~~n--~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l  131 (195)
                      .++...+.+.  .++.++. .+.  .+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++.... +++|+.|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~-~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDA-TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHH-HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhH-HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence            4445555544  5555555 444  6789999999999999975  78889999999999999998887555 7899999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeecc-ccccCCCCCcEEEcCCCCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++++|.++.++  .+..+++|++|++++|++++++. ..+..+++|+.|++++|++++.+
T Consensus        99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            99999999876  46778899999999999998754 56889999999999999886553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=1.2e-14  Score=110.85  Aligned_cols=103  Identities=20%  Similarity=0.168  Sum_probs=59.0

Q ss_pred             ceEEEecCCCceeeCCCCC--CceeEEEeecCCcccc-chhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEc
Q psy14767         35 KRTVECIDRNFYTIPEGID--LDTQVLDLSSNNINVL-QKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDL  111 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n~i~~~-~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l  111 (195)
                      .+.+++.++.+...+....  ++++.|++++|.++.. .+..+.  .+++|++|++++|.++...+..+..+++|+.|++
T Consensus        72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            3556666666655444333  5677777777776642 333343  5667777777777766555555666667777777


Q ss_pred             CCC-CCCc--ccCccc-ccccCeeecCCC-ccc
Q psy14767        112 SDN-LLST--VPSLIY-IPYLKSINLAHN-PIH  139 (195)
Q Consensus       112 ~~n-~l~~--~~~~~~-~~~l~~l~l~~n-~~~  139 (195)
                      ++| .++.  ++.... +++|+.|++++| .++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            666 4542  222222 455555555555 443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=5.5e-14  Score=109.38  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=44.6

Q ss_pred             ccCCCCCccEEEcCCCCCC-----cccCccc-ccccCeeecCCCcccccC----CCcC--CCCCCCCEEecCCCccee--
Q psy14767         99 AFRGVTNMDELDLSDNLLS-----TVPSLIY-IPYLKSINLAHNPIHQIS----SYSF--QSTPGIRYIDMSNCQIHT--  164 (195)
Q Consensus        99 ~~~~l~~l~~l~l~~n~l~-----~~~~~~~-~~~l~~l~l~~n~~~~~~----~~~~--~~~~~L~~L~l~~n~l~~--  164 (195)
                      .+..+++|+.|++++|.++     .++.... +++|+.|++++|.++...    +..+  ..+++|+.|++++|.+++  
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g  290 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  290 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence            3444455555555555542     2222222 455555555555554331    1122  224556666666666665  


Q ss_pred             --eccccc-cCCCCCcEEEcCCCCCCCCC
Q psy14767        165 --IYSEAF-YGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       165 --~~~~~~-~~l~~l~~l~l~~n~l~~~~  190 (195)
                        ..+..+ .++++|+.|++++|++++..
T Consensus       291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          291 VRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              122222 44566666666666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=1.1e-11  Score=96.94  Aligned_cols=101  Identities=14%  Similarity=0.262  Sum_probs=69.0

Q ss_pred             CcceecccccCCCCCccEEEcCCCCCC-----cccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcce
Q psy14767         91 KLEFVDDRAFRGVTNMDELDLSDNLLS-----TVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH  163 (195)
Q Consensus        91 ~i~~~~~~~~~~l~~l~~l~l~~n~l~-----~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (195)
                      .++.+...+|.++.+|+.+++.++.+.     .++...|  +++|+.+.+. +.++.+...+|.++++|+.+++..| ++
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            355555666666666666666665544     4566666  5667777776 3467777777777777777777544 77


Q ss_pred             eeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        164 TIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       164 ~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      .+...+|.++ +|+.+++.+|.+..+++..|
T Consensus       336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             EECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             EEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence            7777778777 78888888887777766655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.36  E-value=9.5e-14  Score=105.88  Aligned_cols=148  Identities=15%  Similarity=0.215  Sum_probs=87.0

Q ss_pred             ceEEEecCCCcee--eCCCCC--CceeEEEeecCCccccchhhhhccCCCCccEEEeecC-Cccee-cccccCCCCCccE
Q psy14767         35 KRTVECIDRNFYT--IPEGID--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFV-DDRAFRGVTNMDE  108 (195)
Q Consensus        35 ~~~~~c~~~~l~~--~p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~-~~~~~~~l~~l~~  108 (195)
                      -+.++.+++.+..  +|..+.  ++++.|++++|.++...+..+.  .+++|++|++++| .++.. .+..+..+++|+.
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            4667777776653  443222  5788888888877755555555  5677888888877 56542 2334556677777


Q ss_pred             EEcCCC-CCCc--ccCccc-cc-ccCeeecCCCc--cc--ccCCCcCCCCCCCCEEecCCCc-ceeeccccccCCCCCcE
Q psy14767        109 LDLSDN-LLST--VPSLIY-IP-YLKSINLAHNP--IH--QISSYSFQSTPGIRYIDMSNCQ-IHTIYSEAFYGIDKIDT  178 (195)
Q Consensus       109 l~l~~n-~l~~--~~~~~~-~~-~l~~l~l~~n~--~~--~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~  178 (195)
                      |++++| .++.  ++.... ++ +|+.|++++|.  ++  .++ ..+..+++|+.|++++|. +++.....+..+++|+.
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            777777 6663  232222 55 66666666663  22  121 123345566666666666 45444445555566666


Q ss_pred             EEcCCCC
Q psy14767        179 LKLNGNK  185 (195)
Q Consensus       179 l~l~~n~  185 (195)
                      |++++|.
T Consensus       252 L~l~~~~  258 (336)
T 2ast_B          252 LSLSRCY  258 (336)
T ss_dssp             EECTTCT
T ss_pred             eeCCCCC
Confidence            6666653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.36  E-value=3.5e-13  Score=104.83  Aligned_cols=153  Identities=16%  Similarity=0.239  Sum_probs=114.5

Q ss_pred             CceEEEecCCCcee-----eCCCCC--CceeEEEeecCCccccc----hhhhhccCC---------CCccEEEeecCCcc
Q psy14767         34 GKRTVECIDRNFYT-----IPEGID--LDTQVLDLSSNNINVLQ----KEIFLQMGI---------TNIQKLYLRKCKLE   93 (195)
Q Consensus        34 ~~~~~~c~~~~l~~-----~p~~~~--~~l~~L~l~~n~i~~~~----~~~~~~~~l---------~~L~~l~l~~n~i~   93 (195)
                      .-+.++.+++.+..     +|..+.  ++++.|++++|.++...    ...+.  .+         ++|++|++++|.++
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ--ELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH--HHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH--HHhhhhhcccCCCCcEEECCCCCCC
Confidence            35778888888775     454443  78999999999997322    22232  33         78999999999997


Q ss_pred             eec-c---cccCCCCCccEEEcCCCCCCc------ccCccc-ccccCeeecCCCccc----ccCCCcCCCCCCCCEEecC
Q psy14767         94 FVD-D---RAFRGVTNMDELDLSDNLLST------VPSLIY-IPYLKSINLAHNPIH----QISSYSFQSTPGIRYIDMS  158 (195)
Q Consensus        94 ~~~-~---~~~~~l~~l~~l~l~~n~l~~------~~~~~~-~~~l~~l~l~~n~~~----~~~~~~~~~~~~L~~L~l~  158 (195)
                      ... +   ..+..+++|+.|++++|+++.      ++.... +++|+.|++++|.++    ...+..+..+++|+.|+++
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence            322 2   356678899999999999982      231333 889999999999985    2223356778999999999


Q ss_pred             CCcceee----ccccc--cCCCCCcEEEcCCCCCCC
Q psy14767        159 NCQIHTI----YSEAF--YGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       159 ~n~l~~~----~~~~~--~~l~~l~~l~l~~n~l~~  188 (195)
                      +|.+++.    .+..+  +.+++|+.|++++|++++
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            9999876    23445  348999999999999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=2.4e-11  Score=95.09  Aligned_cols=145  Identities=17%  Similarity=0.334  Sum_probs=73.1

Q ss_pred             CceeeCCCCC---CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC------
Q psy14767         44 NFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN------  114 (195)
Q Consensus        44 ~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n------  114 (195)
                      .++.++....   .+++.+++.+|.++.++...|.   ..+|+.+.+. +.++.+...+|.++.+|+.+++..+      
T Consensus       167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~  242 (401)
T 4fdw_A          167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQ  242 (401)
T ss_dssp             TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECT
T ss_pred             CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCccc
Confidence            3444444333   3456666666666655555553   3455555555 2355566666666666666666542      


Q ss_pred             ---------------CCCcccCccc--ccccCeeecCCCccc-----ccCCCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767        115 ---------------LLSTVPSLIY--IPYLKSINLAHNPIH-----QISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG  172 (195)
Q Consensus       115 ---------------~l~~~~~~~~--~~~l~~l~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  172 (195)
                                     .++.++..+|  +.+|+.+.+.++.+.     .++..+|.++++|+.+++. +.++.+...+|.+
T Consensus       243 ~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~  321 (401)
T 4fdw_A          243 EAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG  321 (401)
T ss_dssp             TTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred             cccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence                           2233333333  344444444444332     3444455555555555555 2355555555555


Q ss_pred             CCCCcEEEcCCCCCCCCCCCCC
Q psy14767        173 IDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       173 l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +.+|+.+++..| ++.+...+|
T Consensus       322 c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             CCSCCEEEECTT-CCEECTTSS
T ss_pred             CCCccEEEECcc-ccEEcHHhC
Confidence            555555555333 445544444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.4e-12  Score=101.12  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=103.9

Q ss_pred             ceEEEecCCCceeeC-----CC---CCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc-----C
Q psy14767         35 KRTVECIDRNFYTIP-----EG---IDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF-----R  101 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p-----~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~-----~  101 (195)
                      .+.++.+++.+....     ..   ....++.|++++|.++......+.. .+++|+.|++++|.++......+     .
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            356777777765422     11   1247888999998887543333221 34678899999998876544433     2


Q ss_pred             CCCCccEEEcCCCCCCcccCcc-----c-ccccCeeecCCCcccccC----CCcCCCCCCCCEEecCCCcceeecc----
Q psy14767        102 GVTNMDELDLSDNLLSTVPSLI-----Y-IPYLKSINLAHNPIHQIS----SYSFQSTPGIRYIDMSNCQIHTIYS----  167 (195)
Q Consensus       102 ~l~~l~~l~l~~n~l~~~~~~~-----~-~~~l~~l~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----  167 (195)
                      ..+.|+.|++++|.++......     . .++|++|++++|.++...    ...+...++|+.|++++|.+++...    
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            4578899999999887532221     1 678999999999887543    2344556789999999999986533    


Q ss_pred             ccccCCCCCcEEEcCCCCCCC
Q psy14767        168 EAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       168 ~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      .++...++|+.|++++|++++
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhCCCCCEEeccCCCCCH
Confidence            344566889999999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=2.7e-12  Score=101.81  Aligned_cols=151  Identities=13%  Similarity=0.222  Sum_probs=101.2

Q ss_pred             eEEEecCCCceeeCCC--C--CCceeEEEeecCCccccc----hhhhhccCCCCccEEEeecCCcceeccccc-CCCC--
Q psy14767         36 RTVECIDRNFYTIPEG--I--DLDTQVLDLSSNNINVLQ----KEIFLQMGITNIQKLYLRKCKLEFVDDRAF-RGVT--  104 (195)
Q Consensus        36 ~~~~c~~~~l~~~p~~--~--~~~l~~L~l~~n~i~~~~----~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~-~~l~--  104 (195)
                      +.++.+++.+...+..  +  .++++.|++++|.++...    +..+.  .+++|++|++++|.++......+ ..+.  
T Consensus         6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4567777776554321  1  257888999998887432    23333  56789999999988876443322 2333  


Q ss_pred             --CccEEEcCCCCCCcc-----cCccc-ccccCeeecCCCcccccCCCc-----CCCCCCCCEEecCCCcceeec----c
Q psy14767        105 --NMDELDLSDNLLSTV-----PSLIY-IPYLKSINLAHNPIHQISSYS-----FQSTPGIRYIDMSNCQIHTIY----S  167 (195)
Q Consensus       105 --~l~~l~l~~n~l~~~-----~~~~~-~~~l~~l~l~~n~~~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~----~  167 (195)
                        +|+.|++++|.++..     +.... +++|+.|++++|.++......     ....++|++|++++|++++..    +
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              688999998888742     22222 778889999988876432211     223457899999999888643    4


Q ss_pred             ccccCCCCCcEEEcCCCCCCC
Q psy14767        168 EAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       168 ~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      ..+..+++|+.|++++|++++
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHhhCCCCCEEECcCCCcch
Confidence            456667889999999998754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.22  E-value=1.7e-11  Score=80.95  Aligned_cols=65  Identities=26%  Similarity=0.521  Sum_probs=58.6

Q ss_pred             CCCCCCeecccCCceEEEecCCCce--eeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCc
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFY--TIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKL   92 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~--~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i   92 (195)
                      +||..|.|.    ...++|++++++  .+|.+++.+++.|+|++|.|+.+++..|.  .+++|+.|++.+|.+
T Consensus         1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A            1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCC
T ss_pred             CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCe
Confidence            599999998    479999999999  99999999999999999999999998887  678888888888865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.21  E-value=1.1e-12  Score=104.00  Aligned_cols=64  Identities=13%  Similarity=0.292  Sum_probs=40.5

Q ss_pred             ccccCeeecCCCcccccCCCcCC-----CCCCCCEEecCCCccee----eccccccCCCCCcEEEcCCCCCCC
Q psy14767        125 IPYLKSINLAHNPIHQISSYSFQ-----STPGIRYIDMSNCQIHT----IYSEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       125 ~~~l~~l~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      +++|+.|++++|.++......+.     ..++|++|++++|.+++    ..+..+..+++|+.|++++|++++
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            46677777777766544322111     14577777777777774    334556667778888888887764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.11  E-value=5.5e-12  Score=97.79  Aligned_cols=137  Identities=12%  Similarity=0.163  Sum_probs=102.0

Q ss_pred             CCCceeEEEeecCCccccchhhhhcc---CCCCccEEEeecCCcceeccccc-CCCCCccEEEcCCCCCCcccCccc---
Q psy14767         52 IDLDTQVLDLSSNNINVLQKEIFLQM---GITNIQKLYLRKCKLEFVDDRAF-RGVTNMDELDLSDNLLSTVPSLIY---  124 (195)
Q Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~~---~l~~L~~l~l~~n~i~~~~~~~~-~~l~~l~~l~l~~n~l~~~~~~~~---  124 (195)
                      +.+.++.|++++|.++......+...   ..++|+.|++++|.++......+ ..+.+++.|++++|.++......+   
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            34678999999999986555544321   23689999999999876443333 235689999999999975433222   


Q ss_pred             ----ccccCeeecCCCcccccCC----CcCCCCCCCCEEecCCCcceeec----cccccCCCCCcEEEcCCCCCCC
Q psy14767        125 ----IPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHTIY----SEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       125 ----~~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                          .++|+.|++++|.++....    ..+...++|++|+|++|.+++..    .+++...++|+.|++++|.+++
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence                4679999999999876332    23356788999999999998653    3556777899999999999875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.89  E-value=2e-08  Score=77.80  Aligned_cols=133  Identities=14%  Similarity=0.311  Sum_probs=100.9

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeee
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSIN  132 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~  132 (195)
                      .++.+.+.. .++.+....|.  ++..|+.+.+..+ ++.+...+|.++..++.+++.. .++.++...|  +.+|+.+.
T Consensus       218 ~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~  292 (379)
T 4h09_A          218 NLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV  292 (379)
T ss_dssp             SCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred             ccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence            445555543 35556666665  6778888888765 7788888888888888888854 4777777777  77888888


Q ss_pred             cCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        133 LAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       133 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +.++.++.++..+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|
T Consensus       293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            8888888888888988889999988754 78888888888888888888654 666666555

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.68  E-value=2.6e-09  Score=87.13  Aligned_cols=66  Identities=12%  Similarity=0.137  Sum_probs=48.4

Q ss_pred             ccccCeeecCCCcccccC-CCcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEEcCCCCCCCCC
Q psy14767        125 IPYLKSINLAHNPIHQIS-SYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       125 ~~~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      +++|+.|++++|+++... +..+.++++|+.|++++|.+++.. +.....+++|+.|++++|++++..
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence            567888888888876532 223466788999999999987542 334467889999999999987653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.63  E-value=4.1e-07  Score=70.83  Aligned_cols=114  Identities=16%  Similarity=0.345  Sum_probs=87.3

Q ss_pred             CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccC
Q psy14767         65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQIS  142 (195)
Q Consensus        65 ~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~  142 (195)
                      .++.+....|.  ++..|+.+.+..+ +..+...+|.++..|+.+.+. +.++.++..+|  +.+|+.+.+..+ ++.+.
T Consensus       252 ~v~~i~~~aF~--~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  326 (394)
T 4gt6_A          252 GVARIETHAFD--SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL  326 (394)
T ss_dssp             TEEEECTTTTT--TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             cceEcccceee--ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence            34455556665  6777888888654 456777788888888888885 56778888887  678888888754 77888


Q ss_pred             CCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767        143 SYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       143 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                      ..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.++
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            888888888888888654 77787888888888888888876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.60  E-value=6.7e-07  Score=69.15  Aligned_cols=116  Identities=18%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      ..++.+.+..+ ++.+....|.  ++.+++.+.+.. .++.+...+|.++.+|+.+.+..+.++.++..+|  +.+|+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~--~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQ--NCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTT--TCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             ccceEEEcCCC-ccEeCccccc--eeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            46788888765 7888888887  788999999974 5888888999999999999999999999999998  7899999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK  175 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  175 (195)
                      .+..+ ++.|...+|.++.+|+.+.+..+ ++.+...+|.++..
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            99754 88999999999999999999765 88888888887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.56  E-value=4.3e-08  Score=79.95  Aligned_cols=84  Identities=14%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             ceeEEEeecCC-ccccc-hhhhhccCCCCccEEEeecCCcceecc----cccCCCCCccEEEcCCCCCCcccCcc-----
Q psy14767         55 DTQVLDLSSNN-INVLQ-KEIFLQMGITNIQKLYLRKCKLEFVDD----RAFRGVTNMDELDLSDNLLSTVPSLI-----  123 (195)
Q Consensus        55 ~l~~L~l~~n~-i~~~~-~~~~~~~~l~~L~~l~l~~n~i~~~~~----~~~~~l~~l~~l~l~~n~l~~~~~~~-----  123 (195)
                      +++.|+++++. ++... .....  .+++|++|++++|.++....    ..+..+++|+.|++++|.++.+....     
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            47778877765 22110 11111  45677777777776654321    12334567777777777665322111     


Q ss_pred             c-ccccCeeecCCCcccc
Q psy14767        124 Y-IPYLKSINLAHNPIHQ  140 (195)
Q Consensus       124 ~-~~~l~~l~l~~n~~~~  140 (195)
                      . +++|+.|++++|.+..
T Consensus       217 ~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HHCTTCCEEECSSCBGGG
T ss_pred             hhCCCCcEEeccCccHHH
Confidence            1 5667777776665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.56  E-value=1.4e-08  Score=70.97  Aligned_cols=110  Identities=10%  Similarity=0.094  Sum_probs=69.8

Q ss_pred             CCCCccEEEeecC-Ccceec----ccccCCCCCccEEEcCCCCCCcccCccc------ccccCeeecCCCcccccC----
Q psy14767         78 GITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQIS----  142 (195)
Q Consensus        78 ~l~~L~~l~l~~n-~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~~~~------~~~l~~l~l~~n~~~~~~----  142 (195)
                      ..++|++|++++| .+....    ..++...++++.|++++|.+..-.....      .++|++|++++|.++...    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            4566777777777 665322    2334555677778887777764222111      457788888888776422    


Q ss_pred             CCcCCCCCCCCEEec--CCCcceeec----cccccCCCCCcEEEcCCCCCC
Q psy14767        143 SYSFQSTPGIRYIDM--SNCQIHTIY----SEAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       143 ~~~~~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~l~~l~l~~n~l~  187 (195)
                      ...+...++|++|++  ++|.+++..    .+++...++|+.|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            123455567888888  778887542    244556678888888888753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.51  E-value=1.1e-06  Score=68.34  Aligned_cols=123  Identities=15%  Similarity=0.309  Sum_probs=55.1

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeec
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINL  133 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l  133 (195)
                      +++.+.+.. .++.+....|.  ++++|+.+++..+ ++.+...+|.++..|+.+.+..+ ++.+...+| ...+.....
T Consensus        72 ~L~~i~lp~-~i~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           72 KVTEIKIPS-TVREIGEFAFE--NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             TEEEEECCT-TCCEECTTTTT--TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred             CceEEEeCC-CccCcchhHhh--CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence            344444432 24445444444  4445555555432 44444445554444444433221 222222222 111111111


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                       ......+...+|.++++|+.+.+.++ +..+...+|.++.+|+.+++..+
T Consensus       147 -~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          147 -PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             -CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             -CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence             11223344455666666666666543 34455556666666666666544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.50  E-value=1.4e-08  Score=82.77  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             CCCCCccEEEcCCCCCCcccCc--cc-ccccCeeecCCCcccccCCCcC-CCCCCCCEEecCCCcceeeccc-cccCCCC
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSL--IY-IPYLKSINLAHNPIHQISSYSF-QSTPGIRYIDMSNCQIHTIYSE-AFYGIDK  175 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~--~~-~~~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~  175 (195)
                      ..+++|+.|++++ .++.....  .. .++|+.|++++|.++......+ ..+++|+.|++++|.+++.... ....+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3445666666654 33321111  11 5567777777776654332222 3467777777777777543322 3345677


Q ss_pred             CcEEEcCCCCC
Q psy14767        176 IDTLKLNGNKL  186 (195)
Q Consensus       176 l~~l~l~~n~l  186 (195)
                      |+.|++++|++
T Consensus       508 L~~L~l~~~~~  518 (594)
T 2p1m_B          508 MRSLWMSSCSV  518 (594)
T ss_dssp             SSEEEEESSCC
T ss_pred             CCEEeeeCCCC
Confidence            77777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.47  E-value=2.2e-06  Score=66.64  Aligned_cols=101  Identities=20%  Similarity=0.360  Sum_probs=70.0

Q ss_pred             CCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEE
Q psy14767         78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYI  155 (195)
Q Consensus        78 ~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L  155 (195)
                      .+..++.+....+   .++..+|.++.+|+.+.+..+ ++.++..+|  +.+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus       274 ~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i  348 (394)
T 4fs7_A          274 NCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI  348 (394)
T ss_dssp             TCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccceeccCce---eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence            3344444444332   244556667777777777543 667777777  677888888643 777888888888888888


Q ss_pred             ecCCCcceeeccccccCCCCCcEEEcCCC
Q psy14767        156 DMSNCQIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       156 ~l~~n~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                      ++..+ ++.+...+|.++.+|+.+++..+
T Consensus       349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          349 NFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            88766 77777788888888888887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.46  E-value=1.7e-06  Score=67.38  Aligned_cols=124  Identities=10%  Similarity=0.272  Sum_probs=93.2

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      ..++.+.+..+ +..+....|.  +++.|+.+.+. +.++.++..+|.++.+|+.+++..+ ++.+...+|  +.+|+.+
T Consensus       265 ~~L~~i~lp~~-~~~I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          265 AYLASVKMPDS-VVSIGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             SSCCEEECCTT-CCEECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccEEecccc-cceecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            35677777654 4557777776  78899999996 6788999999999999999999754 888999888  7899999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKL  186 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l  186 (195)
                      .+..+ ++.+...+|.++++|+.+++.++....   .++....+|+.+.+..+.+
T Consensus       340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          340 AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            99654 889999999999999999999886432   3566777888888876643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.37  E-value=1.9e-07  Score=71.95  Aligned_cols=129  Identities=15%  Similarity=0.119  Sum_probs=73.4

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc--CCCCCccEEEcCC--CC------CCcccCcc
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF--RGVTNMDELDLSD--NL------LSTVPSLI  123 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~--~~l~~l~~l~l~~--n~------l~~~~~~~  123 (195)
                      +.++.|.++++.--.+++  +   .+++|+.|++..+.+..-....+  ..+++|+.|+|+.  +.      +..+....
T Consensus       172 P~L~~L~L~g~~~l~l~~--~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGK--K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             TTCCEEEEECCBTCBCCS--C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCcEEEEeCCCCceecc--c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            467777777762112222  1   35677777777776643322222  2567788887743  11      11111111


Q ss_pred             ---cccccCeeecCCCcccccCCCc---CCCCCCCCEEecCCCcceeecc----ccccCCCCCcEEEcCCCCCC
Q psy14767        124 ---YIPYLKSINLAHNPIHQISSYS---FQSTPGIRYIDMSNCQIHTIYS----EAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       124 ---~~~~l~~l~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~l~~l~l~~n~l~  187 (195)
                         .+++|+.|.+.+|.+.......   ...+++|++|+|+.|.+++...    ..+..+++|+.|++++|.++
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence               1577888888877765321101   1245778888888888876422    22345678888888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.33  E-value=1.8e-07  Score=76.30  Aligned_cols=127  Identities=15%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecC-Ccceec-ccccCCCCCccEEEcCCCCCCcccC-----ccc-cc
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVD-DRAFRGVTNMDELDLSDNLLSTVPS-----LIY-IP  126 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~~-~~~~~~l~~l~~l~l~~n~l~~~~~-----~~~-~~  126 (195)
                      +++.|+++++.++......+.. .+++|+.|++.+| .++... +..+..+++|+.|++++|.++....     ... ++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5566666666555333322210 2456666666655 333211 1122245566666666665443211     111 44


Q ss_pred             ccCeeecCCCcccccCCCc----CCCCCCCCEEecCCC-cceeeccccccCCCCCcEEEcCCC
Q psy14767        127 YLKSINLAHNPIHQISSYS----FQSTPGIRYIDMSNC-QIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       127 ~l~~l~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                      +|+.|++++|. ..+....    ...+++|+.|++++| .+++ .+..+..+++|+.|+++++
T Consensus       185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBC
T ss_pred             cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccc
Confidence            56666666554 1111111    122456666666665 3334 2344555566666665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=7.3e-08  Score=67.33  Aligned_cols=111  Identities=12%  Similarity=0.097  Sum_probs=78.8

Q ss_pred             CceeEEEeecC-Cccccchhhhhc--cCCCCccEEEeecCCcceec----ccccCCCCCccEEEcCCCCCCcccC-----
Q psy14767         54 LDTQVLDLSSN-NINVLQKEIFLQ--MGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTVPS-----  121 (195)
Q Consensus        54 ~~l~~L~l~~n-~i~~~~~~~~~~--~~l~~L~~l~l~~n~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~-----  121 (195)
                      +.++.|++++| .+..-....+..  ...++|++|++++|.+....    ..++...+.|+.|++++|.++.-..     
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            57999999999 887533222211  04578999999999987533    2344556789999999999985321     


Q ss_pred             ccc-ccccCeeec--CCCcccccCC----CcCCCCCCCCEEecCCCccee
Q psy14767        122 LIY-IPYLKSINL--AHNPIHQISS----YSFQSTPGIRYIDMSNCQIHT  164 (195)
Q Consensus       122 ~~~-~~~l~~l~l--~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~  164 (195)
                      ... .++|+.|++  ++|.++....    ..+...++|++|++++|.+..
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            112 678999999  8898875321    234445789999999999864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=1.4e-07  Score=69.62  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             CCCCCccEEEcCCCCCCcccCcc---c-ccccCeeecCCCcccccCC-CcCCCCCCCCEEecCCCcceeec-------cc
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLI---Y-IPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIY-------SE  168 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~---~-~~~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~-------~~  168 (195)
                      ..++.|+.|++++|+++.++...   . +++|+.|++++|.++.+.. ..+..+ +|+.|++++|.+++-.       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            34678888888888888765422   2 7788888888888877632 233344 7888888888887521       13


Q ss_pred             cccCCCCCcEEE
Q psy14767        169 AFYGIDKIDTLK  180 (195)
Q Consensus       169 ~~~~l~~l~~l~  180 (195)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            456677777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=1.7e-06  Score=63.72  Aligned_cols=79  Identities=25%  Similarity=0.446  Sum_probs=53.2

Q ss_pred             EEcCCCCCCcccCccc-----ccccCeeecCCCcccccCC--CcCCCCCCCCEEecCCCcceeec-cccccCCCCCcEEE
Q psy14767        109 LDLSDNLLSTVPSLIY-----IPYLKSINLAHNPIHQISS--YSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDKIDTLK  180 (195)
Q Consensus       109 l~l~~n~l~~~~~~~~-----~~~l~~l~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~l~~l~  180 (195)
                      ++++.|+...++....     +++|+.|++++|.++.+..  ..+..+++|+.|+|++|+++++. ...+..+ +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            5566665444433221     6788888888888887653  33446788888888888888762 2223333 788888


Q ss_pred             cCCCCCCC
Q psy14767        181 LNGNKLAS  188 (195)
Q Consensus       181 l~~n~l~~  188 (195)
                      +++|++++
T Consensus       227 L~~Npl~~  234 (267)
T 3rw6_A          227 LDGNSLCD  234 (267)
T ss_dssp             CTTSTTGG
T ss_pred             ccCCcCcc
Confidence            88888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=4.2e-06  Score=64.51  Aligned_cols=149  Identities=13%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecC--C------cceeccccc--CCCC
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC--K------LEFVDDRAF--RGVT  104 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n--~------i~~~~~~~~--~~l~  104 (195)
                      -+.+.+.++.-..+|.-..++++.|.+..+.++.-....+....+++|+.|+++.+  .      +..+.+ .+  ..++
T Consensus       174 L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p  252 (362)
T 2ra8_A          174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFP  252 (362)
T ss_dssp             CCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCT
T ss_pred             CcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCC
Confidence            45566655421233332246899999999988743333332225789999998632  1      212211 22  2478


Q ss_pred             CccEEEcCCCCCCccc-Cc---c-cccccCeeecCCCcccccCC----CcCCCCCCCCEEecCCCcceeeccccccCCCC
Q psy14767        105 NMDELDLSDNLLSTVP-SL---I-YIPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDK  175 (195)
Q Consensus       105 ~l~~l~l~~n~l~~~~-~~---~-~~~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  175 (195)
                      +|+.|++..|.+.... ..   . .+++|+.|+++.|.++....    ..+..+++|+.|++++|.+++....++...- 
T Consensus       253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-  331 (362)
T 2ra8_A          253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-  331 (362)
T ss_dssp             TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred             CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence            9999999998876311 11   1 27899999999998876321    1223468999999999998865444444311 


Q ss_pred             CcEEEcCCCC
Q psy14767        176 IDTLKLNGNK  185 (195)
Q Consensus       176 l~~l~l~~n~  185 (195)
                      -..++++.++
T Consensus       332 g~~~~~~~~~  341 (362)
T 2ra8_A          332 PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBC
T ss_pred             CCEEEecCCc
Confidence            3467888876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.92  E-value=2.8e-05  Score=50.95  Aligned_cols=56  Identities=13%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             cEEEcCCCCCC--cccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcce
Q psy14767        107 DELDLSDNLLS--TVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH  163 (195)
Q Consensus       107 ~~l~l~~n~l~--~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (195)
                      ..++.+++.++  .+|... ..+++.|++++|.++.++...|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36788888888  777653 446888899999998888888888888999999988875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=4.2e-06  Score=57.68  Aligned_cols=85  Identities=8%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             CCccEEEeecCCcceecccccCCCCCccEEEcCCCC-CCccc--Cccc----ccccCeeecCCCc-ccccCCCcCCCCCC
Q psy14767         80 TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNL-LSTVP--SLIY----IPYLKSINLAHNP-IHQISSYSFQSTPG  151 (195)
Q Consensus        80 ~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~-l~~~~--~~~~----~~~l~~l~l~~n~-~~~~~~~~~~~~~~  151 (195)
                      .+|+.|+++++.++...-..+.++++|+.|+++++. ++.-.  ....    .++|+.|++++|. ++.-.-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            369999999999877666667788899999998873 55311  1111    2368888888874 66543334556788


Q ss_pred             CCEEecCCCc-cee
Q psy14767        152 IRYIDMSNCQ-IHT  164 (195)
Q Consensus       152 L~~L~l~~n~-l~~  164 (195)
                      |+.|+++++. +++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            8888888775 554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.66  E-value=9.8e-06  Score=55.83  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=53.7

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCC-cceecccccCCC----CCccEEEcCCC-CCCc--ccCcccc
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCK-LEFVDDRAFRGV----TNMDELDLSDN-LLST--VPSLIYI  125 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~-i~~~~~~~~~~l----~~l~~l~l~~n-~l~~--~~~~~~~  125 (195)
                      ..++.|+++++.|+...-..+.  ++++|+.|++++|. ++...-..+..+    ++|+.|+++++ +++.  +.....+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            3688888888887755444454  67888888888885 554333334433    36888888876 4663  2222227


Q ss_pred             cccCeeecCCCc
Q psy14767        126 PYLKSINLAHNP  137 (195)
Q Consensus       126 ~~l~~l~l~~n~  137 (195)
                      ++|+.|+++++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            788888888774

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.58  E-value=4.2e-05  Score=53.64  Aligned_cols=107  Identities=12%  Similarity=0.076  Sum_probs=68.1

Q ss_pred             CCCccEEEeecC-Ccceec----ccccCCCCCccEEEcCCCCCCcccCccc------ccccCeeecCCCcccccCC----
Q psy14767         79 ITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLIY------IPYLKSINLAHNPIHQISS----  143 (195)
Q Consensus        79 l~~L~~l~l~~n-~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~~~~------~~~l~~l~l~~n~~~~~~~----  143 (195)
                      -++|++|++++| .|....    ..++..-..|+.|++++|.+........      ...|++|++++|.|+.-..    
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            356788888774 664321    2345556778888888888774333222      5678888888888764321    


Q ss_pred             CcCCCCCCCCEEecCCC---cceee----ccccccCCCCCcEEEcCCCC
Q psy14767        144 YSFQSTPGIRYIDMSNC---QIHTI----YSEAFYGIDKIDTLKLNGNK  185 (195)
Q Consensus       144 ~~~~~~~~L~~L~l~~n---~l~~~----~~~~~~~l~~l~~l~l~~n~  185 (195)
                      .++..-+.|+.|+|++|   .+...    ..+++...+.|..|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            23444567888988765   34432    23456677788888887764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.84  E-value=0.00039  Score=48.71  Aligned_cols=86  Identities=12%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             cCCCCCccEEEcCCC-CCCcccCcc-----c-ccccCeeecCCCcccccCCCc----CCCCCCCCEEecCCCcceeec--
Q psy14767        100 FRGVTNMDELDLSDN-LLSTVPSLI-----Y-IPYLKSINLAHNPIHQISSYS----FQSTPGIRYIDMSNCQIHTIY--  166 (195)
Q Consensus       100 ~~~l~~l~~l~l~~n-~l~~~~~~~-----~-~~~l~~l~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~--  166 (195)
                      +..-+.|+.|+++++ .+..-....     . ...|+.|++++|.+......+    +..-+.|+.|+|++|.|++..  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345578999999985 776422111     1 678999999999987544322    333478999999999998643  


Q ss_pred             --cccccCCCCCcEEEcCCCC
Q psy14767        167 --SEAFYGIDKIDTLKLNGNK  185 (195)
Q Consensus       167 --~~~~~~l~~l~~l~l~~n~  185 (195)
                        .+++.....|+.|++++|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhhCCceeEEECCCCc
Confidence              3566777889999998653

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.06  E-value=0.18  Score=30.98  Aligned_cols=46  Identities=9%  Similarity=0.164  Sum_probs=27.5

Q ss_pred             CCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCC
Q psy14767        114 NLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNC  160 (195)
Q Consensus       114 n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  160 (195)
                      ..++.+...+|  +.+|+.+.+-.+ ++.|...+|.++.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34555666666  556666666543 55666666666666666666543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.41  E-value=0.31  Score=29.92  Aligned_cols=46  Identities=24%  Similarity=0.448  Sum_probs=26.6

Q ss_pred             CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         65 NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        65 ~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      .++.+....|.  ++.+|+.+.+.. .++.|...+|.++.+|+.+.+..
T Consensus         7 ~vt~I~~~aF~--~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            7 PVVGMDKSLFA--GNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCSSCSCTTT--TCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred             ccCEecHHHhc--CCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence            45555555555  566666666654 34555556666666666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	195
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-11
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.0 bits (201), Expect = 1e-19
 Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 22  SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITN 81
            CP  C C      R V+C D     +P+ +  DT +LDL +N I  ++   F  +   N
Sbjct: 3   VCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL--KN 56

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQI 141
           +  L L   K+  +   AF  +  ++ L LS N L  +P  +     + + +  N I ++
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL-QELRVHENEITKV 115

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTI--YSEAFYGIDKIDTLKLNGNKLASLKPRTWS 195
               F     +  +++    + +    + AF G+ K+  +++    + ++      
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 6e-14
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 2/173 (1%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C +   K T  C  +    +P GI   +Q + L  N I+ +    F       I
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLI-YIPYLKSINLAHNPIHQI 141
             L+                +    +L  +  L S  P+    +  L +++L    + ++
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
               F+    ++Y+ + +  +  +  + F  +  +  L L+GN+++S+  R +
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 5e-11
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 25/192 (13%)

Query: 27  CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
           C     A    V C  RN   +P  +  DT +L LS N +        +    T + +L 
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPY--TRLTQLN 61

Query: 87  LRKCKLE-----------------------FVDDRAFRGVTNMDELDLSDNLLSTVPSLI 123
           L + +L                                    + ++  +      + +L 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 124 YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG 183
            +  L+ + L  N +  +       TP +  + ++N  +  + +    G++ +DTL L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 184 NKLASLKPRTWS 195
           N L ++    + 
Sbjct: 182 NSLYTIPKGFFG 193

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 7e-10
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 6/170 (3%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNI 82
           CP  C C+      TV+C  R    IP  I L T  L L+ N +  +  +         +
Sbjct: 2   CPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV 57

Query: 83  QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVP-SLIYIPYLKSINLAHNPIHQI 141
           +    R        +         +     + +        + +  LK++NL  N I  +
Sbjct: 58  KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

Query: 142 SSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP 191
              SF+    +  +++++   +       +  + +    LNG       P
Sbjct: 118 MPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAP 166

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             L L  NNI+ +     L    T +Q+L+    K+  V   +   +TN++ L    N +
Sbjct: 310 TYLTLYFNNISDISPVSSL----TKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQI 363

Query: 117 STVPSLIYIPYLKSINLAHN 136
           S +  L  +  +  + L   
Sbjct: 364 SDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 9e-06
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 105 NMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHT 164
           N+  L L  N +S +  +  +  L+ +  A+N +  +SS    +   I ++   + QI  
Sbjct: 308 NLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISD 365

Query: 165 IYSEAFYGIDKIDTLKLNGN 184
           +       + +I  L LN  
Sbjct: 366 L--TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L  ++N I+    +I     +TN+ +L L   +L+ +       +TN+ +LDL++N +
Sbjct: 200 ESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQI 253

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI 176
           S +  L  +  L  + L  N I  IS  +  +      ++ +  +  +        +  +
Sbjct: 254 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI----SNLKNL 309

Query: 177 DTLKLNGNKLASLKP 191
             L L  N ++ + P
Sbjct: 310 TYLTLYFNNISDISP 324

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 76  QMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAH 135
              + N+  L L    +   D      +T +  L  ++N +S V SL  +  +  ++  H
Sbjct: 303 ISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360

Query: 136 NPIHQISSYSFQSTPGIRYIDMSN 159
           N I  ++     +   I  + +++
Sbjct: 361 NQISDLT--PLANLTRITQLGLND 382

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-06
 Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 27 CSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLY 86
          C C      R   C +     IP  +  +   L      + V+QK  F   G     ++ 
Sbjct: 6  CHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS 61

Query: 87 LRKC 90
              
Sbjct: 62 QNDV 65

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 12/97 (12%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 86  YLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYS 145
                              +++EL++S+N L  +P+L   P L+ +  + N + ++    
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPE-- 321

Query: 146 FQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLN 182
                 ++ + +    +           + ++ L++N
Sbjct: 322 --LPQNLKQLHVEYNPLREFPDI----PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           + L++S+N +  L            +++L      L  V +       N+ +L +  N L
Sbjct: 287 EELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 336

Query: 117 STVPSLI 123
              P + 
Sbjct: 337 REFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 104 TNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIH 163
               EL+L++  LS++P L   P+L+S+  + N + ++          ++ + + N  + 
Sbjct: 38  RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQS----LKSLLVDNNNLK 91

Query: 164 TIY 166
            + 
Sbjct: 92  ALS 94

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 23  CPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQK-EIFLQMGITN 81
           CP  C      G   + C           +     + +L   N   LQ  E+    G+  
Sbjct: 1   CPDACCP---HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57

Query: 82  IQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIP-YLKSINLAHNPIH 139
           ++ L + K  L FV   AF     +  L+LS N L ++         L+ + L+ NP+H
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
           +VL L+  ++ VL      Q+    +  L L   +L  +   A   +  ++ L  SDN L
Sbjct: 1   RVLHLAHKDLTVL--CHLEQL--LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 55

Query: 117 STVPSLIYIPYLKSINLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTI 165
             V  +  +P L+ + L +N + Q ++     S P +  +++    +   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 109 LDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSE 168
           L L+   L+ +  L  +  +  ++L+HN +  +   +  +   +  +  S+  +  +   
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGV 61

Query: 169 AFYGIDKIDTLKLNGNKLASLKP 191
           A     +   L L  N+L     
Sbjct: 62  ANLPRLQ--ELLLCNNRLQQSAA 82

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 57  QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLL 116
             LDLS N +  L   +     +  +Q        ++         +  + EL L +N L
Sbjct: 23  THLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNNRL 77

Query: 117 STVP---SLIYIPYLKSINLAHNPIHQISSY 144
                   L+  P L  +NL  N + Q    
Sbjct: 78  QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 80  TNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIH 139
              ++L LR  K+  +++     +   D +D SDN +  +     +  LK++ + +N I 
Sbjct: 18  VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 76

Query: 140 QISSYSFQSTPGIRYIDMSNCQIHTI 165
           +I     Q+ P +  + ++N  +  +
Sbjct: 77  RIGEGLDQALPDLTELILTNNSLVEL 102

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 100 FRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMS 158
           +       ELDL    +  + +L   +    +I+ + N I ++  +       ++ + ++
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVN 71

Query: 159 NCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW 194
           N +I  I       +  +  L L  N L  L     
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP 107

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 54  LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDR----AFRGVTNMDEL 109
           LD Q LD+    ++  +    L   +   Q + L  C L     +    A R    + EL
Sbjct: 2   LDIQSLDIQCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 110 DLSDNLLSTVPSLIYIPYLKSINL 133
           +L  N L  V     +  L++ + 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSC 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.57
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.23
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.97

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.4e-26  Score=162.75  Aligned_cols=138  Identities=26%  Similarity=0.505  Sum_probs=128.8

Q ss_pred             CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccc-cchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINV-LQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~-~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      .||..|.|.    ...++|++++++++|.+++++++.|+|++|.|+. ++...|.  ++++|+.|++++|.+..++++.|
T Consensus         1 ~CP~~C~C~----~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~--~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEE----TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEEc----CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccC--CCceEeeeecccccccccccccc
Confidence            599999998    4689999999999999999999999999999985 6677777  78999999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceee
Q psy14767        101 RGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTI  165 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  165 (195)
                      ..++.|+.|++++|+++.+++..|  +++|++|++++|+++.+++++|..+++|+++++++|.+...
T Consensus        75 ~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            999999999999999999999888  89999999999999999999999999999999999988653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-26  Score=169.64  Aligned_cols=170  Identities=23%  Similarity=0.433  Sum_probs=131.5

Q ss_pred             CCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCccee------
Q psy14767         22 SCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFV------   95 (195)
Q Consensus        22 ~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~------   95 (195)
                      +||..|+|.. .....++|++.+++.+|..++++++.|++++|.|+++++..|.  +++.|+++++++|.+..+      
T Consensus         1 ~cp~~C~C~~-~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~   77 (284)
T d1ozna_           1 PCPGACVCYN-EPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFT   77 (284)
T ss_dssp             CCCTTCEEEC-SSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcCCCCEEcC-CCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhh--cccccccccccccccccccccccc
Confidence            6999999963 2346799999999999999999999999999999999998887  788999999999876433      


Q ss_pred             -------------------cccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCE
Q psy14767         96 -------------------DDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRY  154 (195)
Q Consensus        96 -------------------~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~  154 (195)
                                         ++..|.++++|+.++++.|.+..++...+  ..+|+.+++.+|.++.+++..|..+++|+.
T Consensus        78 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~  157 (284)
T d1ozna_          78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (284)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhh
Confidence                               34456666778888888887776655544  566777777777777777666766777777


Q ss_pred             EecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        155 IDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       155 L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      |++++|+++.+++.++.++++|+.+++++|++++++++.|
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f  197 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccccCcccccchhhhccccccchhhhhhccccccChhHh
Confidence            7777777777766667777777777777777777666555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-25  Score=162.81  Aligned_cols=166  Identities=23%  Similarity=0.371  Sum_probs=136.4

Q ss_pred             CCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCC
Q psy14767         25 LGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT  104 (195)
Q Consensus        25 ~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~  104 (195)
                      ..|.|....+...|+|++++++.+|.+++++++.|+|++|.|+.+++..|.  ++++|++|++++|.|+.+++  +..++
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l~   77 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTLP   77 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCCT
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhh--cccccccccccccccccccc--ccccc
Confidence            369998777677899999999999999999999999999999999999887  78999999999999998864  56788


Q ss_pred             CccEEEcCCCCCCcccCccc-cccc------------------------CeeecCCCcccccCCCcCCCCCCCCEEecCC
Q psy14767        105 NMDELDLSDNLLSTVPSLIY-IPYL------------------------KSINLAHNPIHQISSYSFQSTPGIRYIDMSN  159 (195)
Q Consensus       105 ~l~~l~l~~n~l~~~~~~~~-~~~l------------------------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~  159 (195)
                      +|+.|++++|+++..+.... +++|                        +.+.+.+|.++.+++..+..+++++.+++++
T Consensus        78 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc
Confidence            88899998888876544333 4444                        4455555555666666677778888899999


Q ss_pred             CcceeeccccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        160 CQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       160 n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      |++++++++.+..+++|+.|++++|+++.+|+..|
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~  192 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF  192 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccccccCccccccccccceeecccCCCcccChhHC
Confidence            99988888888888999999999999998887655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.7e-25  Score=165.61  Aligned_cols=94  Identities=31%  Similarity=0.599  Sum_probs=86.1

Q ss_pred             CCCCCCCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceeccccc
Q psy14767         21 ASCPLGCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAF  100 (195)
Q Consensus        21 ~~c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~  100 (195)
                      +.||..|.|.    .+.++|++.+++++|.+++++++.|++++|+|+++++..|.  ++++|++|++++|.+..+++.+|
T Consensus         2 ~~~p~~c~c~----~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           2 PVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCEec----CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhhh
Confidence            6799999998    47899999999999999999999999999999999998887  78999999999999999999999


Q ss_pred             CCCCCccEEEcCCCCCCccc
Q psy14767        101 RGVTNMDELDLSDNLLSTVP  120 (195)
Q Consensus       101 ~~l~~l~~l~l~~n~l~~~~  120 (195)
                      ..++.|+.+++++|+++.++
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~   95 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELP   95 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCC
T ss_pred             hCCCccCEecccCCccCcCc
Confidence            99999999999998775443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.8e-21  Score=137.67  Aligned_cols=166  Identities=18%  Similarity=0.313  Sum_probs=117.6

Q ss_pred             CCC-CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcce-eccccc
Q psy14767         23 CPL-GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAF  100 (195)
Q Consensus        23 c~~-~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~-~~~~~~  100 (195)
                      |+- .|+|.    .+.++|++.+++++|.+++++++.|++++|.|+.++...|.  ++++|++|++++|.+.. +++.+|
T Consensus         1 ~~~~~C~C~----~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1           1 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             CCCSSEEEC----SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CcCCcCCCc----CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhh--ccchhhhhhhccccccceeecccc
Confidence            553 59998    47899999999999999999999999999999999998887  88999999999997643 334444


Q ss_pred             CC-------------------------CCCccEEEcCCCCCCcccCccc----------------------------ccc
Q psy14767        101 RG-------------------------VTNMDELDLSDNLLSTVPSLIY----------------------------IPY  127 (195)
Q Consensus       101 ~~-------------------------l~~l~~l~l~~n~l~~~~~~~~----------------------------~~~  127 (195)
                      .+                         +++|+.+++++|.++..+...+                            ...
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~  154 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE  154 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccccc
Confidence            44                         4455555555554433221111                            012


Q ss_pred             cCeeecCCCcccccCCCcCCCCCCCC-EEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCCCCCC
Q psy14767        128 LKSINLAHNPIHQISSYSFQSTPGIR-YIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKPRTWS  195 (195)
Q Consensus       128 l~~l~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~  195 (195)
                      +..+++.+|+++.++...+.. .++. .+++++|+++.++..+|.++++|+.|++++|+++++++..|.
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             ceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            333455555555555544443 3333 345677778888777888999999999999999999887763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.8e-20  Score=136.46  Aligned_cols=148  Identities=21%  Similarity=0.286  Sum_probs=108.2

Q ss_pred             ceEEEecCCCceeeCCCC-C--CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcce-----------------
Q psy14767         35 KRTVECIDRNFYTIPEGI-D--LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-----------------   94 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~-~--~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~-----------------   94 (195)
                      .+.++.+++.++.+|.+. .  ++++.|++++|.|+.++...    .+++|+.|++++|+++.                 
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCS----CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             CCEEECcCCcCCCcCHHHhhcccccccccccccccccccccc----cccccccccccccccccccccccccccccccccc
Confidence            466777777777776432 2  46777777777777665432    34556666666665544                 


Q ss_pred             ------ecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767         95 ------VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus        95 ------~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                            +.+..+..+.+++.+++++|.++.++...+  ++.++.+++++|+++.+++..|..+++|++|+|++|+++.++
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccC
Confidence                  444444445555566666666666666655  788999999999999999989999999999999999999886


Q ss_pred             cccccCCCCCcEEEcCCCCCC
Q psy14767        167 SEAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       167 ~~~~~~l~~l~~l~l~~n~l~  187 (195)
                      +. +..+++|+.|++++|++.
T Consensus       189 ~~-~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         189 KG-FFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TT-TTTTCCCSEEECCSCCBC
T ss_pred             hh-HCCCCCCCEEEecCCCCC
Confidence            54 567899999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=3.1e-20  Score=129.91  Aligned_cols=129  Identities=18%  Similarity=0.323  Sum_probs=117.4

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcce-ecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEF-VDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~-~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      +.++.++++++.+|+...     +++++|++++|+|+. +.+..|.++++|+.|++++|.++.++...+  +++|+.|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp-----~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP-----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCcCccCCCCC-----CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            467899999999987653     579999999999975 667788999999999999999999888777  889999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCC
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++|+++.+++.+|.++++|++|+|++|+|+++++.+|..+++|+++++++|++....
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999987543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-19  Score=132.62  Aligned_cols=160  Identities=21%  Similarity=0.333  Sum_probs=134.9

Q ss_pred             ceEEEecCCCceeeCCCCC---CceeEEEeecCCccccchhhhhc-----------------------cCCCCccEEEee
Q psy14767         35 KRTVECIDRNFYTIPEGID---LDTQVLDLSSNNINVLQKEIFLQ-----------------------MGITNIQKLYLR   88 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~---~~l~~L~l~~n~i~~~~~~~~~~-----------------------~~l~~L~~l~l~   88 (195)
                      .+.++.+++.++.+|....   ++++.+++++|.+..++...+..                       .++++|+.++++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            4678999999999887543   57889999888776554433221                       146789999999


Q ss_pred             cCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeec
Q psy14767         89 KCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIY  166 (195)
Q Consensus        89 ~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  166 (195)
                      +|.+..+.+..+....+|+.+++++|.++.++...+  .++++.|++++|.++.+++.+|.++++|+++++++|+++++.
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence            999988888888888999999999999999988777  788999999999999999889999999999999999999998


Q ss_pred             cccccCCCCCcEEEcCCCCCCCCCCCCC
Q psy14767        167 SEAFYGIDKIDTLKLNGNKLASLKPRTW  194 (195)
Q Consensus       167 ~~~~~~l~~l~~l~l~~n~l~~~~~~~~  194 (195)
                      +..|..+++++.|++++|.++++++..|
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             hhHhhhhhhccccccccccccccccccc
Confidence            8889999999999999999999887543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-18  Score=116.73  Aligned_cols=112  Identities=21%  Similarity=0.318  Sum_probs=95.4

Q ss_pred             CCCCCeecccCCceEEEecCCCceeeCCCCC--CceeEEEeecC-CccccchhhhhccCCCCccEEEeecCCcceecccc
Q psy14767         23 CPLGCSCKWKAGKRTVECIDRNFYTIPEGID--LDTQVLDLSSN-NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRA   99 (195)
Q Consensus        23 c~~~c~c~~~~~~~~~~c~~~~l~~~p~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~   99 (195)
                      ||..|.|..   ...++|+++++.++|..++  ++++.|++.+| .++.+++..|.  ++++|+.|++++|+|+.+++.+
T Consensus         1 CP~~C~c~~---~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           1 CPDACCPHG---SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             CCSSSCCSS---SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTG
T ss_pred             CcCCCCcCC---CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhc--cccccCcceeeccccCCccccc
Confidence            899999983   4679999999999998887  58888998765 58989888887  7889999999999999998888


Q ss_pred             cCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCccc
Q psy14767        100 FRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIH  139 (195)
Q Consensus       100 ~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~  139 (195)
                      |.++++|+.|++++|+++.++...+ ...++.|++++|.+.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            9999999999999999888888777 556888888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7.6e-17  Score=113.00  Aligned_cols=147  Identities=15%  Similarity=0.303  Sum_probs=125.6

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      -+.+++.++++..++. ...++++.|++++|+++.+++  +.  ++++|+.|++++|.+..++  .+.+++.|+.+++++
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFN  115 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCS
T ss_pred             CCEEECCCCCCCCccccccCCCcCcCccccccccCccc--cc--CCccccccccccccccccc--ccccccccccccccc
Confidence            5779999999888753 223799999999999998875  54  7899999999999998876  378899999999999


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +....++....+++++.+++++|++..++  .+..+++++.|++.+|+++++.  .++++++|+.|++++|+++++++
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~  189 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDISV  189 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCCcc
Confidence            98887765555889999999999988765  4778899999999999999874  38899999999999999998763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.9e-16  Score=111.83  Aligned_cols=147  Identities=19%  Similarity=0.340  Sum_probs=122.2

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCC
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSD  113 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~  113 (195)
                      -+.+++.++.+..++. .-.++++.|++++|.++.+++.  .  .+++|+.|++++|+++.++  .+..+++|+.+++++
T Consensus        48 L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~--~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL--A--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGG--T--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred             ccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcccc--c--cCccccccccccccccccc--ccccccccccccccc
Confidence            4678999999888763 2247899999999999988753  3  6789999999999999875  478899999999999


Q ss_pred             CCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        114 NLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       114 n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      |.+..++....++.++.+.+++|.++...  .+..+++|+++++++|+++++.+  ++++++|+.|++++|+++++++
T Consensus       122 ~~~~~~~~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~~  195 (210)
T d1h6ta2         122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA  195 (210)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCChh
Confidence            99888776555888999999999887654  35567899999999999988743  7889999999999999988753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4e-17  Score=110.77  Aligned_cols=122  Identities=14%  Similarity=0.273  Sum_probs=103.6

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      ..++.|++++|+|+.++. .+.  .+++|+.|++++|.|+.++  .|..+++|+.|++++|.++.++...+  ++++++|
T Consensus        18 ~~lr~L~L~~n~I~~i~~-~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcEEECCCCCCCccCc-ccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            368999999999999864 334  6789999999999999984  48889999999999999999988765  8899999


Q ss_pred             ecCCCcccccCC-CcCCCCCCCCEEecCCCcceeecc---ccccCCCCCcEEE
Q psy14767        132 NLAHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYS---EAFYGIDKIDTLK  180 (195)
Q Consensus       132 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~l~~l~  180 (195)
                      ++++|.++.++. ..+..+++|+++++++|.++..+.   ..+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            999999988764 567788999999999999987652   3577889999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=2.4e-16  Score=117.68  Aligned_cols=163  Identities=17%  Similarity=0.242  Sum_probs=103.6

Q ss_pred             CCeecccC---CceEEEecCCCce---eeCCCCC--CceeEEEeec-CCcc-ccchhhhhccCCCCccEEEeecCCccee
Q psy14767         26 GCSCKWKA---GKRTVECIDRNFY---TIPEGID--LDTQVLDLSS-NNIN-VLQKEIFLQMGITNIQKLYLRKCKLEFV   95 (195)
Q Consensus        26 ~c~c~~~~---~~~~~~c~~~~l~---~~p~~~~--~~l~~L~l~~-n~i~-~~~~~~~~~~~l~~L~~l~l~~n~i~~~   95 (195)
                      +-.|+...   ..+.++..++.+.   .+|..+.  ++++.|++++ |.+. .+|+. +.  .+++|++|++++|++..+
T Consensus        40 gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~--~L~~L~~L~Ls~N~l~~~  116 (313)
T d1ogqa_          40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IA--KLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GG--GCTTCSEEEEEEECCEEE
T ss_pred             CeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cc--cccccchhhhcccccccc
Confidence            44565332   2455778887665   4777665  7999999986 7887 45554 44  688999999999988776


Q ss_pred             cccccCCCCCccEEEcCCC------------------------CCC-cccCccc-c------------------------
Q psy14767         96 DDRAFRGVTNMDELDLSDN------------------------LLS-TVPSLIY-I------------------------  125 (195)
Q Consensus        96 ~~~~~~~l~~l~~l~l~~n------------------------~l~-~~~~~~~-~------------------------  125 (195)
                      .+..+..+..|+.++++.|                        .++ .+|.... +                        
T Consensus       117 ~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~  196 (313)
T d1ogqa_         117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             ccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            6555555555555555444                        433 1221111 1                        


Q ss_pred             ------------------------cccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEc
Q psy14767        126 ------------------------PYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKL  181 (195)
Q Consensus       126 ------------------------~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l  181 (195)
                                              ++++.+++.+|.++..++ .+..+++++.|++++|++++..|+.+..+++|+.|++
T Consensus       197 l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence                                    112222222222222221 3455678889999999999877778899999999999


Q ss_pred             CCCCCCCCCCC
Q psy14767        182 NGNKLASLKPR  192 (195)
Q Consensus       182 ~~n~l~~~~~~  192 (195)
                      ++|+++|..|+
T Consensus       276 s~N~l~g~iP~  286 (313)
T d1ogqa_         276 SFNNLCGEIPQ  286 (313)
T ss_dssp             CSSEEEEECCC
T ss_pred             cCCcccccCCC
Confidence            99999865443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.1e-16  Score=103.83  Aligned_cols=118  Identities=19%  Similarity=0.300  Sum_probs=84.1

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCC
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHN  136 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n  136 (195)
                      ++|++++|.++.++.  +.  .+++|++|++++|.++.+++ .+..+++|+.+++++|.++.++....+++|+++++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~--~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cc--cCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCccccccccCeEECCCC
Confidence            467888888887754  33  56778888888888887754 57778888888888888887765444778888888888


Q ss_pred             cccccCC-CcCCCCCCCCEEecCCCcceeec---cccccCCCCCcEE
Q psy14767        137 PIHQISS-YSFQSTPGIRYIDMSNCQIHTIY---SEAFYGIDKIDTL  179 (195)
Q Consensus       137 ~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~l~~l  179 (195)
                      +++.++. ..+..+++|+.+++++|++++..   ......+++++.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8877664 45667778888888888876542   2334445666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=9.7e-17  Score=104.04  Aligned_cols=104  Identities=18%  Similarity=0.315  Sum_probs=86.7

Q ss_pred             cEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCc
Q psy14767         83 QKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQ  161 (195)
Q Consensus        83 ~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  161 (195)
                      +.|++++|+++.++  .+..+..++++++++|.++.+|.... +++|+.|++++|.++.++  .+..+++|+.+++++|+
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC--ccccccccCeEECCCCc
Confidence            46889999998775  37788899999999999998876544 888999999999998875  47788899999999999


Q ss_pred             ceeecc-ccccCCCCCcEEEcCCCCCCCCC
Q psy14767        162 IHTIYS-EAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       162 l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      +++++. ..+..+++|+.+++++|++++.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            988753 56788889999999999887654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.4e-17  Score=109.15  Aligned_cols=112  Identities=18%  Similarity=0.251  Sum_probs=98.9

Q ss_pred             CCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEec
Q psy14767         78 GITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDM  157 (195)
Q Consensus        78 ~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l  157 (195)
                      +..++++|++++|+|+.++ ..+..+.+|+.|++++|.++.++....+++|++|++++|+++.+++..+..+++|+.|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            5668999999999999996 456778999999999999999876444899999999999999998877778899999999


Q ss_pred             CCCcceeecc-ccccCCCCCcEEEcCCCCCCCCC
Q psy14767        158 SNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       158 ~~n~l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ++|+++++.. ..+..+++|+.+++++|+++..+
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             ccccccccccccccccccccchhhcCCCcccccc
Confidence            9999998754 56889999999999999998765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=2.1e-16  Score=117.91  Aligned_cols=154  Identities=19%  Similarity=0.263  Sum_probs=124.0

Q ss_pred             CCeecccCCceEEEecCCCceeeCCCCCCceeEEEeecCCccc---cchhhhhccCCCCccEEEeec-CCcceecccccC
Q psy14767         26 GCSCKWKAGKRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINV---LQKEIFLQMGITNIQKLYLRK-CKLEFVDDRAFR  101 (195)
Q Consensus        26 ~c~c~~~~~~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~---~~~~~~~~~~l~~L~~l~l~~-n~i~~~~~~~~~  101 (195)
                      .|.|.|.    .|.|.+..-       ...++.|+|+++.++.   +++.. .  .+++|++|++++ |.+.+..|..|.
T Consensus        33 ~C~~~w~----gv~C~~~~~-------~~~v~~L~L~~~~l~g~~~lp~~l-~--~L~~L~~L~Ls~~N~l~g~iP~~i~   98 (313)
T d1ogqa_          33 CCNRTWL----GVLCDTDTQ-------TYRVNNLDLSGLNLPKPYPIPSSL-A--NLPYLNFLYIGGINNLVGPIPPAIA   98 (313)
T ss_dssp             TTTTCST----TEEECCSSS-------CCCEEEEEEECCCCSSCEECCGGG-G--GCTTCSEEEEEEETTEESCCCGGGG
T ss_pred             CCCCcCC----CeEEeCCCC-------cEEEEEEECCCCCCCCCCCCChHH-h--cCccccccccccccccccccccccc
Confidence            3555663    477865331       2368999999999984   44544 4  689999999987 788855567899


Q ss_pred             CCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCC-cE
Q psy14767        102 GVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKI-DT  178 (195)
Q Consensus       102 ~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l-~~  178 (195)
                      ++++|++|++++|+++.++...+  ..+|+.+++++|.+....+..+..++.++.+++++|.+++..+..+..+..+ +.
T Consensus        99 ~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~  178 (313)
T d1ogqa_          99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred             cccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccc
Confidence            99999999999999998777655  8889999999999888777788899999999999999998777777777665 88


Q ss_pred             EEcCCCCCCCCCCCC
Q psy14767        179 LKLNGNKLASLKPRT  193 (195)
Q Consensus       179 l~l~~n~l~~~~~~~  193 (195)
                      +++++|++++..+..
T Consensus       179 l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         179 MTISRNRLTGKIPPT  193 (313)
T ss_dssp             EECCSSEEEEECCGG
T ss_pred             ccccccccccccccc
Confidence            999999988776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=3e-15  Score=111.11  Aligned_cols=135  Identities=21%  Similarity=0.339  Sum_probs=109.5

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l  131 (195)
                      +.++.+++++|.+..++...     .++++.+++.+|......+..|.+++.++.|++++|.++.++...+  +++|+.|
T Consensus       150 ~~L~~l~l~~n~l~~l~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             TTCCEEECCSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             cccCccccccCCccccCccc-----CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence            47888999999888776543     3578999999999888888888888899999999999998877666  7889999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccc------cCCCCCcEEEcCCCCCC--CCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF------YGIDKIDTLKLNGNKLA--SLKPRTW  194 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~l~~l~~l~l~~n~l~--~~~~~~~  194 (195)
                      ++++|+++.++. .+..+++|++|++++|+|+.+....|      ....+++.+++++|+++  .++|.+|
T Consensus       225 ~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         225 HLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             ECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             eccccccccccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            999999988865 67888999999999999988765444      34578889999999876  4555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.3e-15  Score=104.27  Aligned_cols=140  Identities=16%  Similarity=0.253  Sum_probs=119.1

Q ss_pred             CceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         34 GKRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        34 ~~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      .-+.++++++.++.++. .-.++++.|++++|+++.++.  +.  ++++|+.+++.+|.+..++  .+..++.++.++++
T Consensus        69 ~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLG  142 (210)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GT--TCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECC
T ss_pred             CCCEEeCCCccccCccccccCcccccccccccccccccc--cc--ccccccccccccccccccc--cccccccccccccc
Confidence            35789999999988774 334789999999999998764  44  6899999999999988765  47788999999999


Q ss_pred             CCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCC
Q psy14767        113 DNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNG  183 (195)
Q Consensus       113 ~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~  183 (195)
                      +|.++..+....+++|+.+++++|+++.+.+  +..+++|+.|++++|++++++  .+..+++|+.|++++
T Consensus       143 ~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence            9999876655558999999999999988764  778999999999999999874  488999999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.5e-14  Score=101.81  Aligned_cols=146  Identities=19%  Similarity=0.333  Sum_probs=116.2

Q ss_pred             ceEEEecCCCceeeCCCC--CCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcC
Q psy14767         35 KRTVECIDRNFYTIPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLS  112 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~  112 (195)
                      -+.+++.++++++++ ++  .++++.|++++|.++.+.+  +.  .+++++.+++.+|.++.++  ++.+++.|+.++++
T Consensus        43 L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~--~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (227)
T ss_dssp             CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             cCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cc--ccccccccccccccccccc--cccccccccccccc
Confidence            477889999988874 34  3799999999999988765  44  6789999999999988775  47788889999888


Q ss_pred             CCCCCcccCcc----------------------cccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccc
Q psy14767        113 DNLLSTVPSLI----------------------YIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAF  170 (195)
Q Consensus       113 ~n~l~~~~~~~----------------------~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  170 (195)
                      .+....+....                      ..++++.+.+++|.++...  .+..+++|+.|++++|+++++.+  +
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~--l  191 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP--L  191 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCChh--h
Confidence            87655332110                      1466888899888877655  37788999999999999998743  7


Q ss_pred             cCCCCCcEEEcCCCCCCCCCC
Q psy14767        171 YGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       171 ~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +.+++|+.|++++|+++++++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG
T ss_pred             cCCCCCCEEECcCCcCCCCcc
Confidence            889999999999999998875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=110.66  Aligned_cols=146  Identities=21%  Similarity=0.344  Sum_probs=94.6

Q ss_pred             eEEEecCCCceeeC-CCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767         36 RTVECIDRNFYTIP-EGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (195)
Q Consensus        36 ~~~~c~~~~l~~~p-~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n  114 (195)
                      ..+++.++.++.++ ....++++.+++++|.++.++.  +.  .+++++.+++.+|.++.+++  +..+++|+.++++++
T Consensus       200 ~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~  273 (384)
T d2omza2         200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN  273 (384)
T ss_dssp             SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             ceeeccCCccCCCCcccccCCCCEEECCCCCCCCcch--hh--cccccchhccccCccCCCCc--ccccccCCEeeccCc
Confidence            44555555555543 2333556666666666665432  22  34556666666666555442  444555555555555


Q ss_pred             CCCcc----------------------cCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccC
Q psy14767        115 LLSTV----------------------PSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYG  172 (195)
Q Consensus       115 ~l~~~----------------------~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  172 (195)
                      .++.+                      +....+++++.+++++|+++++++  +..+++|+.|++++|+++++.  .+++
T Consensus       274 ~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~  349 (384)
T d2omza2         274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLAN  349 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGG
T ss_pred             ccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcC
Confidence            54433                      222225678888888888887753  667889999999999998864  4788


Q ss_pred             CCCCcEEEcCCCCCCCCCC
Q psy14767        173 IDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       173 l~~l~~l~l~~n~l~~~~~  191 (195)
                      +++|+.|++++|+++++++
T Consensus       350 l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         350 LTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             CTTCCEEECCSSCCCBCGG
T ss_pred             CCCCCEEECCCCcCCCChh
Confidence            8999999999999988865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.1e-14  Score=100.32  Aligned_cols=128  Identities=17%  Similarity=0.357  Sum_probs=110.7

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeec
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL  133 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l  133 (195)
                      ..++.|+++++.++.+..  +.  .+++|++|++++|.++.+.+  +.++++|+.+++++|.+..++....++.|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~--l~--~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG--VE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCccc--cc--cCCCcCcCccccccccCccc--ccCCcccccccccccccccccccccccccccccc
Confidence            578999999999998754  33  57899999999999998865  8899999999999999998886555889999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +++....+.  .+..+++|+.+++++|++..++  .+..+++++.|++.+|+++++++
T Consensus       114 ~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~  167 (199)
T d2omxa2         114 FNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP  167 (199)
T ss_dssp             CSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG
T ss_pred             ccccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc
Confidence            999887765  4678899999999999998763  47889999999999999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=4.8e-14  Score=107.26  Aligned_cols=142  Identities=20%  Similarity=0.290  Sum_probs=110.9

Q ss_pred             ceEEEecCCCceeeCC-CCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecc----------------
Q psy14767         35 KRTVECIDRNFYTIPE-GIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDD----------------   97 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~----------------   97 (195)
                      -+.+++.++.++.+|. ...++++.+++++|.++.+++  +.  .+++|+.++++++.++.+.+                
T Consensus       221 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--cc--ccccCCEeeccCcccCCCCccccccccccccccccc
Confidence            4567888888777653 223678888888888887665  22  46777888877776654432                


Q ss_pred             ----cccCCCCCccEEEcCCCCCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCC
Q psy14767         98 ----RAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGI  173 (195)
Q Consensus        98 ----~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  173 (195)
                          ..+..+.+++.+++++|+++.++....+++|+.|++++|+++.++  .+.++++|++|++++|+++++.+  +.++
T Consensus       297 l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l  372 (384)
T d2omza2         297 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANL  372 (384)
T ss_dssp             CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred             cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccC
Confidence                124556788999999999998875444899999999999998876  47889999999999999999864  8899


Q ss_pred             CCCcEEEcCCC
Q psy14767        174 DKIDTLKLNGN  184 (195)
Q Consensus       174 ~~l~~l~l~~n  184 (195)
                      ++|+.|++++|
T Consensus       373 ~~L~~L~L~~N  383 (384)
T d2omza2         373 TRITQLGLNDQ  383 (384)
T ss_dssp             TTCSEEECCCE
T ss_pred             CCCCEeeCCCC
Confidence            99999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=92.18  Aligned_cols=103  Identities=20%  Similarity=0.340  Sum_probs=90.1

Q ss_pred             eEEEeecCCccccchhhhhccCCCCccEEEeecC-CcceecccccCCCCCccEEEcCCCCCCcccCccc--ccccCeeec
Q psy14767         57 QVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINL  133 (195)
Q Consensus        57 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l  133 (195)
                      ..++.+++++.+++... .  +++++++|++.+| .++.+++++|.++++|+.|++++|+++.++..+|  +++++.|++
T Consensus        11 ~~l~c~~~~~~~~p~~l-~--~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHL-P--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SCEECCSSCCCTTTTTS-C--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CeEEecCCCCccCcccc-c--CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            45788888888776654 3  6789999999866 5999999999999999999999999999988877  889999999


Q ss_pred             CCCcccccCCCcCCCCCCCCEEecCCCcce
Q psy14767        134 AHNPIHQISSYSFQSTPGIRYIDMSNCQIH  163 (195)
Q Consensus       134 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~  163 (195)
                      ++|+++.++...+... .|+.|++++|.+.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            9999999998888665 6999999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=3.3e-16  Score=109.62  Aligned_cols=127  Identities=17%  Similarity=0.258  Sum_probs=85.6

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeec
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL  133 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l  133 (195)
                      ++++.|++++|.|+.++.  +.  ++++|+.|++++|.++.+++ .+..++.|+.|++++|.++.++....+++|+.|++
T Consensus        48 ~~L~~L~Ls~n~I~~i~~--l~--~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS--LS--GMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESCCCC--HH--HHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCCccc--cc--CCccccChhhcccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            577888888888877643  43  56778888888888777643 23334567888888888777654333777888888


Q ss_pred             CCCcccccCC-CcCCCCCCCCEEecCCCcceeeccc----------cccCCCCCcEEEcCCCCCC
Q psy14767        134 AHNPIHQISS-YSFQSTPGIRYIDMSNCQIHTIYSE----------AFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       134 ~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~~~l~~l~~l~l~~n~l~  187 (195)
                      ++|+++.++. ..+..+++|+.|++++|+++...+.          .+..+++|+.||  +.+++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            8887776643 3566777888888888877654332          245667777765  44444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=1e-12  Score=93.27  Aligned_cols=130  Identities=19%  Similarity=0.386  Sum_probs=105.9

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeec
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINL  133 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l  133 (195)
                      .+++.|++.+|+|+.+..  +.  .+++|+.+++++|.++.+.+  +..+++++.+++++|.++.++....+++++.+.+
T Consensus        41 ~~L~~L~l~~~~i~~l~~--l~--~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEG--VQ--YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcchh--Hh--cCCCCcEeecCCceeecccc--cccccccccccccccccccccccccccccccccc
Confidence            478999999999998843  44  68999999999999998764  7889999999999999998876555888999998


Q ss_pred             CCCcccccCC--------------------CcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        134 AHNPIHQISS--------------------YSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       134 ~~n~~~~~~~--------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      +++....+.+                    ..+...++|+.|++++|.+++..  .++++++|+.|++++|+++++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~  190 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP  190 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCCChh
Confidence            8876553321                    12345577899999999888764  37889999999999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.4e-12  Score=91.26  Aligned_cols=135  Identities=16%  Similarity=0.225  Sum_probs=92.1

Q ss_pred             CceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCC-CccEEEcCCCCCCcccCccc-ccccCee
Q psy14767         54 LDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVT-NMDELDLSDNLLSTVPSLIY-IPYLKSI  131 (195)
Q Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~-~l~~l~l~~n~l~~~~~~~~-~~~l~~l  131 (195)
                      ++++.+++++|.+...+...+.. .+..+..+...++.+..+++..|.++. .++.+++++|+++.++...+ ..++..+
T Consensus       103 ~~L~~l~l~~~~l~~~~~~~~~~-~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~  181 (242)
T d1xwdc1         103 PNLQYLLISNTGIKHLPDVHKIH-SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL  181 (242)
T ss_dssp             TTCCEEEEESCCCCSCCCCTTTC-BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEE
T ss_pred             ccccccccchhhhcccccccccc-cccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcc
Confidence            34555555555554433322110 223344444444455566556666554 67778999999998888877 5555554


Q ss_pred             -ecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        132 -NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       132 -~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                       .+.+|+++.++...|.++++|++|++++|+++.+++..+.++++|+.+++.  .+..+|+
T Consensus       182 ~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~--~l~~lp~  240 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLKKLPT  240 (242)
T ss_dssp             ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE--SSSCSCC
T ss_pred             ccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC--CCCcCCC
Confidence             567889999998889999999999999999999988888888877776654  3556664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=2.1e-15  Score=105.47  Aligned_cols=130  Identities=22%  Similarity=0.322  Sum_probs=104.4

Q ss_pred             ceeEEEeecC--CccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCccc-ccccCee
Q psy14767         55 DTQVLDLSSN--NINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIY-IPYLKSI  131 (195)
Q Consensus        55 ~l~~L~l~~n--~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~-~~~l~~l  131 (195)
                      ..+.+.++++  .+..++.. +.  .+++|++|++++|.|+.++  .+.++++|+.|++++|.++.++.... .++|+.|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~s-l~--~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDAT-LS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHH-HH--HTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhhH-Hh--cccccceeECcccCCCCcc--cccCCccccChhhccccccccccccccccccccc
Confidence            3445566554  34444433 44  6789999999999999885  48889999999999999998886555 6789999


Q ss_pred             ecCCCcccccCCCcCCCCCCCCEEecCCCcceeecc-ccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        132 NLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-EAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       132 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      ++++|.++.++  .+..+++|+.|++++|+++++.. ..+..+++|+.|++++|+++..++
T Consensus        99 ~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_          99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            99999998875  36677899999999999998753 568999999999999998765443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.27  E-value=1.1e-10  Score=87.15  Aligned_cols=140  Identities=19%  Similarity=0.350  Sum_probs=105.5

Q ss_pred             ceEEEecCCCceeeCCCCCCceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCC
Q psy14767         35 KRTVECIDRNFYTIPEGIDLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDN  114 (195)
Q Consensus        35 ~~~~~c~~~~l~~~p~~~~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n  114 (195)
                      .+.+++++++++.+|+ .+++++.|++++|+|++++..      ..+|+.|++.+|.++.++.  +  .+.|++|++++|
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~------~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL------PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNN  108 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSS
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc------hhhhhhhhhhhcccchhhh--h--cccccccccccc
Confidence            5689999999999996 467899999999999988643      3579999999999988753  1  246999999999


Q ss_pred             CCCcccCcccccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCCCCCC
Q psy14767        115 LLSTVPSLIYIPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLASLKP  191 (195)
Q Consensus       115 ~l~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~~~~~  191 (195)
                      .++.+|....+++|+.+++.++.+...+.    ....+..+.+.++.....  ..+..++.++.+++++|....++.
T Consensus       109 ~l~~lp~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         109 QLEKLPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             ccccccchhhhccceeecccccccccccc----ccccccchhhcccccccc--ccccccccceeccccccccccccc
Confidence            99999876558899999999998776543    234566666666554432  235566667777777776655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=3.7e-09  Score=78.61  Aligned_cols=115  Identities=16%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             ceeEEEeecCCccccchhhhhccCCCCccEEEeecCCcceecccccCCCCCccEEEcCCCCCCcccCcccccccCeeecC
Q psy14767         55 DTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKCKLEFVDDRAFRGVTNMDELDLSDNLLSTVPSLIYIPYLKSINLA  134 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~~l~~l~~l~l~~n~l~~~~~~~~~~~l~~l~l~  134 (195)
                      +++.|++++++++.+|..      .++|++|++++|+|+.++. .   +.+|+.|++++|+++.++..  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~lp~~------~~~L~~L~Ls~N~l~~lp~-~---~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE-L---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC-C---CTTCCEEECCSSCCSCCCSC--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCCCCCC------CCCCCEEECCCCCCccccc-c---hhhhhhhhhhhcccchhhhh--cccccccccc
Confidence            577899999999988742      3579999999999998853 2   45889999999998877643  4568999999


Q ss_pred             CCcccccCCCcCCCCCCCCEEecCCCcceeeccccccCCCCCcEEEcCCCCCC
Q psy14767        135 HNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYSEAFYGIDKIDTLKLNGNKLA  187 (195)
Q Consensus       135 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~  187 (195)
                      +|.++.++.  +..+++|+.++++++.++..+.    ....+..+.+.++...
T Consensus       107 ~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_         107 NNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             SSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred             ccccccccc--hhhhccceeecccccccccccc----ccccccchhhcccccc
Confidence            999988874  5678899999999998876643    2345566666665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-08  Score=73.67  Aligned_cols=148  Identities=16%  Similarity=0.168  Sum_probs=79.5

Q ss_pred             ceEEEecCCCcee--eCCCC--CCceeEEEeecCCccccchhhhhccCCCCccEEEeecC-Ccceeccc-ccCCCCCccE
Q psy14767         35 KRTVECIDRNFYT--IPEGI--DLDTQVLDLSSNNINVLQKEIFLQMGITNIQKLYLRKC-KLEFVDDR-AFRGVTNMDE  108 (195)
Q Consensus        35 ~~~~~c~~~~l~~--~p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n-~i~~~~~~-~~~~l~~l~~  108 (195)
                      .++++.+++.+..  ++.-+  .++++.|+++++.++......+.  .+++|+.|+++++ .++...-. -..++++|+.
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh--cCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4567776665432  22111  25788888888877654444454  5678888888875 44432111 1234667777


Q ss_pred             EEcCCC-CCCc--ccCcc----------------------------c-ccccCeeecCCCc-ccccCCCcCCCCCCCCEE
Q psy14767        109 LDLSDN-LLST--VPSLI----------------------------Y-IPYLKSINLAHNP-IHQISSYSFQSTPGIRYI  155 (195)
Q Consensus       109 l~l~~n-~l~~--~~~~~----------------------------~-~~~l~~l~l~~n~-~~~~~~~~~~~~~~L~~L  155 (195)
                      |+++++ .++.  +....                            . +++|++|++++|. ++......+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            777763 3321  00000                            0 3456666665542 433333344555666666


Q ss_pred             ecCCC-cceeeccccccCCCCCcEEEcCCC
Q psy14767        156 DMSNC-QIHTIYSEAFYGIDKIDTLKLNGN  184 (195)
Q Consensus       156 ~l~~n-~l~~~~~~~~~~l~~l~~l~l~~n  184 (195)
                      +++++ .+++.....++.+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66663 355444444556666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=1.4e-08  Score=75.87  Aligned_cols=110  Identities=15%  Similarity=0.199  Sum_probs=66.8

Q ss_pred             CCCccEEEeecCCccee-----cccccCCCCCccEEEcCCCCCCccc-----Cccc-ccccCeeecCCCcccccCCC---
Q psy14767         79 ITNIQKLYLRKCKLEFV-----DDRAFRGVTNMDELDLSDNLLSTVP-----SLIY-IPYLKSINLAHNPIHQISSY---  144 (195)
Q Consensus        79 l~~L~~l~l~~n~i~~~-----~~~~~~~l~~l~~l~l~~n~l~~~~-----~~~~-~~~l~~l~l~~n~~~~~~~~---  144 (195)
                      .++++.+++++|.++..     ....+...+.|+.|++++|.++...     .... .++|+.|++++|.++.....   
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            45677777777776531     1234556677888888887765321     1111 56778888888876642211   


Q ss_pred             -cCC--CCCCCCEEecCCCcceeec----cccc-cCCCCCcEEEcCCCCCCC
Q psy14767        145 -SFQ--STPGIRYIDMSNCQIHTIY----SEAF-YGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       145 -~~~--~~~~L~~L~l~~n~l~~~~----~~~~-~~l~~l~~l~l~~n~l~~  188 (195)
                       .+.  ....|+.|++++|+|+...    ..++ .+.++|+.|++++|.+..
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence             111  2256888888888876432    1222 245678888888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=2.1e-08  Score=74.77  Aligned_cols=108  Identities=17%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             CCccEEEeecCCcceec----ccccCCCCCccEEEcCCCCCCcc------cCccc-ccccCeeecCCCcccccC----CC
Q psy14767         80 TNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTV------PSLIY-IPYLKSINLAHNPIHQIS----SY  144 (195)
Q Consensus        80 ~~L~~l~l~~n~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~------~~~~~-~~~l~~l~l~~n~~~~~~----~~  144 (195)
                      +.++.+.+++|.++...    ..++.....++.++++.|.++.-      ..... .++++.|++++|.++...    ..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            34455555555443221    11223345667777777766531      11111 556777777777664321    12


Q ss_pred             cCCCCCCCCEEecCCCcceeeccc----ccc--CCCCCcEEEcCCCCCC
Q psy14767        145 SFQSTPGIRYIDMSNCQIHTIYSE----AFY--GIDKIDTLKLNGNKLA  187 (195)
Q Consensus       145 ~~~~~~~L~~L~l~~n~l~~~~~~----~~~--~l~~l~~l~l~~n~l~  187 (195)
                      .+...++|++|++++|.+++....    ++.  ....++.|++++|+++
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            344556777777777777653222    222  2346777777777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.9e-08  Score=76.03  Aligned_cols=108  Identities=19%  Similarity=0.274  Sum_probs=77.3

Q ss_pred             ceeEEEeecCCccccc-hhhhhccCCCCccEEEeecCCcceec----ccccCCCCCccEEEcCCCCCCccc-----Cccc
Q psy14767         55 DTQVLDLSSNNINVLQ-KEIFLQMGITNIQKLYLRKCKLEFVD----DRAFRGVTNMDELDLSDNLLSTVP-----SLIY  124 (195)
Q Consensus        55 ~l~~L~l~~n~i~~~~-~~~~~~~~l~~L~~l~l~~n~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~-----~~~~  124 (195)
                      +++.|+++.|+++... ...++  .+++++.|++.+|.++...    ..++...++|+.|++++|.++...     ....
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            6889999999998643 22333  4678999999999887433    234567888999999999886321     1111


Q ss_pred             --ccccCeeecCCCcccccC----CCcCCCCCCCCEEecCCCccee
Q psy14767        125 --IPYLKSINLAHNPIHQIS----SYSFQSTPGIRYIDMSNCQIHT  164 (195)
Q Consensus       125 --~~~l~~l~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~  164 (195)
                        ..+|+.|++++|.++...    ...+...++|++|++++|.+++
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence              347899999999887543    2346677889999999988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.8e-08  Score=66.37  Aligned_cols=85  Identities=18%  Similarity=0.214  Sum_probs=54.6

Q ss_pred             cCCCCCccEEEcCCCCCCcccCccc----ccccCeeecCCCcccccCCCcCCCCCCCCEEecCCCcceeecc-------c
Q psy14767        100 FRGVTNMDELDLSDNLLSTVPSLIY----IPYLKSINLAHNPIHQISSYSFQSTPGIRYIDMSNCQIHTIYS-------E  168 (195)
Q Consensus       100 ~~~l~~l~~l~l~~n~l~~~~~~~~----~~~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------~  168 (195)
                      +..++.|+.|++++|+++.++....    +++|+.|++++|.++.++...+....+|+.+++++|.++....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3456677777777777776654322    6777788888887777665333334467788888888765432       2


Q ss_pred             cccCCCCCcEEEcCCCCC
Q psy14767        169 AFYGIDKIDTLKLNGNKL  186 (195)
Q Consensus       169 ~~~~l~~l~~l~l~~n~l  186 (195)
                      .+..+++|+.||  +.++
T Consensus       141 i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         141 IRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHTTSTTCCEET--TEEC
T ss_pred             HHHHCCCCCEEC--cCCC
Confidence            356678888764  4443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.3e-08  Score=65.96  Aligned_cols=79  Identities=23%  Similarity=0.212  Sum_probs=63.3

Q ss_pred             CCCCccEEEeecCCcceecc--cccCCCCCccEEEcCCCCCCcccCccc--ccccCeeecCCCcccccCC-------CcC
Q psy14767         78 GITNIQKLYLRKCKLEFVDD--RAFRGVTNMDELDLSDNLLSTVPSLIY--IPYLKSINLAHNPIHQISS-------YSF  146 (195)
Q Consensus        78 ~l~~L~~l~l~~n~i~~~~~--~~~~~l~~l~~l~l~~n~l~~~~~~~~--~~~l~~l~l~~n~~~~~~~-------~~~  146 (195)
                      .+++|+.|++++|.|+.+.+  ..+..+++|+.|++++|.++.++...+  ...++.+.+.+|.+.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            57899999999999998863  446678999999999999998887555  4578999999999876543       125


Q ss_pred             CCCCCCCEEe
Q psy14767        147 QSTPGIRYID  156 (195)
Q Consensus       147 ~~~~~L~~L~  156 (195)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5678899886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.3e-08  Score=74.10  Aligned_cols=108  Identities=20%  Similarity=0.262  Sum_probs=80.2

Q ss_pred             CccEEEeecCCcceec-ccccCCCCCccEEEcCCCCCCccc-----Cccc-ccccCeeecCCCcccccC----CCcCC-C
Q psy14767         81 NIQKLYLRKCKLEFVD-DRAFRGVTNMDELDLSDNLLSTVP-----SLIY-IPYLKSINLAHNPIHQIS----SYSFQ-S  148 (195)
Q Consensus        81 ~L~~l~l~~n~i~~~~-~~~~~~l~~l~~l~l~~n~l~~~~-----~~~~-~~~l~~l~l~~n~~~~~~----~~~~~-~  148 (195)
                      +|++|++++|+++... ...+..+++++++++++|.++...     .... .++|+.|++++|.++...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6899999999998754 223456789999999999887322     1112 788999999999986422    11222 2


Q ss_pred             CCCCCEEecCCCcceeec----cccccCCCCCcEEEcCCCCCCC
Q psy14767        149 TPGIRYIDMSNCQIHTIY----SEAFYGIDKIDTLKLNGNKLAS  188 (195)
Q Consensus       149 ~~~L~~L~l~~n~l~~~~----~~~~~~l~~l~~l~l~~n~l~~  188 (195)
                      ..+|+.|++++|++++..    ..++..+++|+.|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            357999999999998653    3457788999999999998753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.7e-06  Score=61.57  Aligned_cols=88  Identities=16%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CCCCCccEEEcCCC-CCCccc-Cccc-ccccCeeecCCC-cccccCCCcCCCCCCCCEEecCCCcceeec-cccccCCCC
Q psy14767        101 RGVTNMDELDLSDN-LLSTVP-SLIY-IPYLKSINLAHN-PIHQISSYSFQSTPGIRYIDMSNCQIHTIY-SEAFYGIDK  175 (195)
Q Consensus       101 ~~l~~l~~l~l~~n-~l~~~~-~~~~-~~~l~~l~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~  175 (195)
                      ..+++|+.|+++++ .++.-. .... +++|++|++++| .++......+..+++|+.|++.++ +++.. ......+++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            34688999999875 455322 2222 789999999995 566544455777899999999987 44322 222244565


Q ss_pred             CcEEEcCCCCCCCCCCC
Q psy14767        176 IDTLKLNGNKLASLKPR  192 (195)
Q Consensus       176 l~~l~l~~n~l~~~~~~  192 (195)
                      ++   +..+.++++.+.
T Consensus       251 L~---i~~~~ls~~~~~  264 (284)
T d2astb2         251 LQ---INCSHFTTIARP  264 (284)
T ss_dssp             SE---ESCCCSCCTTCS
T ss_pred             cc---ccCccCCCCCCC
Confidence            54   466777766443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=3.6e-06  Score=56.00  Aligned_cols=107  Identities=14%  Similarity=0.109  Sum_probs=61.1

Q ss_pred             CCCccEEEeecC-Ccceec----ccccCCCCCccEEEcCCCCCCcc--cCccc----ccccCeeecCCCcccccC----C
Q psy14767         79 ITNIQKLYLRKC-KLEFVD----DRAFRGVTNMDELDLSDNLLSTV--PSLIY----IPYLKSINLAHNPIHQIS----S  143 (195)
Q Consensus        79 l~~L~~l~l~~n-~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~--~~~~~----~~~l~~l~l~~n~~~~~~----~  143 (195)
                      .++|++|+++++ .++.-.    ..++...+.++.|++++|.++.-  .....    .+.++.|++++|.++.-.    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666653 333211    12344556677777777766532  11111    456777777777765422    1


Q ss_pred             CcCCCCCCCCEEecCCCcceeec-------cccccCCCCCcEEEcCCCC
Q psy14767        144 YSFQSTPGIRYIDMSNCQIHTIY-------SEAFYGIDKIDTLKLNGNK  185 (195)
Q Consensus       144 ~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~l~~l~~l~l~~n~  185 (195)
                      .++...+.|++|++++|++..+.       ..++...++++.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            23555677888888887665432       2344556788888886653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.24  E-value=3.4e-05  Score=50.94  Aligned_cols=108  Identities=10%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             CCCCccEEEeec-CCcceec----ccccCCCCCccEEEcCCCCCCcccCcc----c--ccccCeeecCCCcccccC----
Q psy14767         78 GITNIQKLYLRK-CKLEFVD----DRAFRGVTNMDELDLSDNLLSTVPSLI----Y--IPYLKSINLAHNPIHQIS----  142 (195)
Q Consensus        78 ~l~~L~~l~l~~-n~i~~~~----~~~~~~l~~l~~l~l~~n~l~~~~~~~----~--~~~l~~l~l~~n~~~~~~----  142 (195)
                      +.++|++|++++ +.++...    ..++...++++.|++++|.++.-....    .  .++++.+++.+|.++.-.    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345666666665 3343221    223445566777777777665321111    1  456777777777654321    


Q ss_pred             CCcCCCCCCCCEEec--CCCcceeec----cccccCCCCCcEEEcCCCC
Q psy14767        143 SYSFQSTPGIRYIDM--SNCQIHTIY----SEAFYGIDKIDTLKLNGNK  185 (195)
Q Consensus       143 ~~~~~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~l~~l~l~~n~  185 (195)
                      ...+...+.|+.+++  ++|.+.+..    .+++...++++.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            123444566776544  456665422    2345567788888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.23  E-value=7.4e-05  Score=49.39  Aligned_cols=89  Identities=16%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             CCCCccEEEcCCC-CCCcc--cCcc--c--ccccCeeecCCCcccccCC----CcCCCCCCCCEEecCCCcceeec----
Q psy14767        102 GVTNMDELDLSDN-LLSTV--PSLI--Y--IPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHTIY----  166 (195)
Q Consensus       102 ~l~~l~~l~l~~n-~l~~~--~~~~--~--~~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~----  166 (195)
                      +.+.|+.|+++++ .++.-  ....  .  .++++.|++++|.++.-..    ..+...+.|+.|++++|.+++..    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999874 56521  1111  1  5789999999998864322    23344578999999999998542    


Q ss_pred             cccccCCCCCcEEEcCCCCCCCCC
Q psy14767        167 SEAFYGIDKIDTLKLNGNKLASLK  190 (195)
Q Consensus       167 ~~~~~~l~~l~~l~l~~n~l~~~~  190 (195)
                      ..++...++|+.|++++|.+..+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCcc
Confidence            345777889999999999876553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.97  E-value=0.0024  Score=41.64  Aligned_cols=88  Identities=10%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             cCCCCCccEEEcCC-CCCCcccC--cc----cccccCeeecCCCcccccCC----CcCCCCCCCCEEecCCCcceeec--
Q psy14767        100 FRGVTNMDELDLSD-NLLSTVPS--LI----YIPYLKSINLAHNPIHQISS----YSFQSTPGIRYIDMSNCQIHTIY--  166 (195)
Q Consensus       100 ~~~l~~l~~l~l~~-n~l~~~~~--~~----~~~~l~~l~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~--  166 (195)
                      ..+.+.|+.+++++ +.++.-..  ..    ..+++++|++++|.++.-..    ..+...+.++.+++++|.++...  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34568999999987 45653211  11    16789999999998764221    23445678999999999987432  


Q ss_pred             --cccccCCCCCcEEEcC--CCCCC
Q psy14767        167 --SEAFYGIDKIDTLKLN--GNKLA  187 (195)
Q Consensus       167 --~~~~~~l~~l~~l~l~--~n~l~  187 (195)
                        .+++...++++.++++  +|++.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence              3556777889887664  55554