Psyllid ID: psy14787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccccccEEEccccccccHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHHcccccccEEHHHHHHHccccccccccEccccccHcHHHHHHHHHHcccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MHLFHVECVDQwlssnkrcpicrvDIEThlnkdllqptwrlpcmhlfHVECVDQwlssnkrcpicrvdiethlnkdllqpt
Flexible Loop (DISEMBL)
MHLFHVECVDqwlssnkrcpICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIEthlnkdllqpt
Low Complexity Region (SEG)
MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT
Disordered region (IsUnstruct)
**LFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN*******
Disordered Region (DISOPRED)
*HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR***************
Disordered Region (DISEMBL)
MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT
Disordered Region (DISPRO)
*HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q0V9R0	954	E3 ubiquitin-protein liga	no	N/A	0.419	0.035	0.794	4e-11
Q6NRV8	959	E3 ubiquitin-protein liga	N/A	N/A	0.419	0.035	0.794	4e-11
Q66J97	967	E3 ubiquitin-protein liga	N/A	N/A	0.419	0.035	0.794	5e-11
Q99ML9	989	E3 ubiquitin-protein liga	yes	N/A	0.419	0.034	0.794	6e-11
Q6ZSG1	346	RING finger protein 165 O	yes	N/A	0.691	0.161	0.532	7e-11
Q5R476	986	E3 ubiquitin-protein liga	yes	N/A	0.419	0.034	0.794	8e-11
E9QAU8	347	RING finger protein 165 O	no	N/A	0.691	0.161	0.532	9e-11
Q6ZNA4	994	E3 ubiquitin-protein liga	no	N/A	0.419	0.034	0.794	9e-11
Q90ZT7	923	E3 ubiquitin-protein liga	N/A	N/A	0.419	0.036	0.794	3e-10
Q9LT17	340	E3 ubiquitin ligase BIG B	yes	N/A	0.691	0.164	0.403	8e-09

>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDI+T L
Sbjct: 917 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 950

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.
Xenopus tropicalis (taxid: 8364)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDI+T L
Sbjct: 922 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 955

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDI+T L
Sbjct: 930 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 963

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDIE  L
Sbjct: 952 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 985

Acts in the Nodal pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 6/62 (9%)

Query: 15  SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
           ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct: 290 TDEKCTICLSMLED--GEDV----RRLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 343

Query: 75  KD 76
            D
Sbjct: 344 AD 345

Homo sapiens (taxid: 9606)

>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDIE  L
Sbjct: 949 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 982

Acts in the NODAL pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 6/62 (9%)

Query: 15  SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
           ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct: 291 TDEKCTICLSMLED--GEDV----RRLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 344

Query: 75  KD 76
            D
Sbjct: 345 AD 346

Mus musculus (taxid: 10090)

>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDIE  L
Sbjct: 957 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 990

Acts in the NODAL pathway of mesoderm patterning during embryonic development. Acts downstream AXIN1 as an E3 ubiquitin-protein ligase which promotes the ubiquitination of inhibitory SMADs such as SMAD7, induces their proteasomal degradation and thereby enhances the transcriptional activity of TGF-beta and BMP. Activates Smad3/Smad4-dependent transcription by triggering signal-induced SnoN degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis GN=rnf111-a PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
           RLPCMHLFH  CVDQWL +NK+CPICRVDI+T L
Sbjct: 886 RLPCMHLFHQVCVDQWLITNKKCPICRVDIDTQL 919

Acts in the nodal-related pathway of mesoderm patterning during embryonic development. Enhances signaling of the subset of TGF-beta factors responsible for the formation of dorso-anterior tissues of Spemann's organizer. May act as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)

Query: 10  DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
           D    +N+ C ICR+D E   ++DL+     LPC H +H EC++ WL  NK CP+C  ++
Sbjct: 279 DNQNGTNESCVICRLDYED--DEDLIL----LPCKHSYHSECINNWLKINKVCPVCSAEV 332

Query: 70  ET 71
            T
Sbjct: 333 ST 334

E3 ubiquitin-ligase probably involved in organ size regulation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
242018674	125	conserved hypothetical protein [Pediculu	0.679	0.44	0.655	1e-14
328708855	760	PREDICTED: hypothetical protein LOC10057	0.753	0.080	0.567	2e-14
357604467	873	hypothetical protein KGM_14148 [Danaus p	0.456	0.042	0.918	4e-14
195054421	1665	GH17353 [Drosophila grimshawi] gi|193895	0.518	0.025	0.761	5e-14
195395880	1477	GJ11010 [Drosophila virilis] gi|19414327	0.518	0.028	0.761	7e-14
195446140	1411	GK10924 [Drosophila willistoni] gi|19416	0.506	0.029	0.780	1e-13
194901950	1251	GG17197 [Drosophila erecta] gi|190652217	0.728	0.047	0.538	1e-13
195501805	1259	GE10089 [Drosophila yakuba] gi|194184052	0.728	0.046	0.538	2e-13
51092240	1256	AT15166p [Drosophila melanogaster]	0.703	0.045	0.537	3e-13
21356709	1256	CG6923, isoform A [Drosophila melanogast	0.703	0.045	0.537	3e-13

>gi|242018674|ref|XP_002429799.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514811|gb|EEB17061.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 6/61 (9%)

Query: 17  KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
           ++C IC  + E       L+   RLPCMHLFH+ECVDQWLS+NKRCPICRVDIETHLNKD
Sbjct: 68  EKCTICLSEFEE------LEDVRRLPCMHLFHIECVDQWLSTNKRCPICRVDIETHLNKD 121

Query: 77  L 77
           +
Sbjct: 122 V 122

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708855|ref|XP_003243816.1| PREDICTED: hypothetical protein LOC100573509 isoform 1 [Acyrthosiphon pisum] gi|328708857|ref|XP_003243817.1| PREDICTED: hypothetical protein LOC100573509 isoform 2 [Acyrthosiphon pisum]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 6/67 (8%)

Query: 10  DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
           D+   + ++C IC  D E        +   RLPCMHLFHV+C+DQWLSSNKRCPICRVDI
Sbjct: 683 DEMEDNTEKCTICLSDFED------TEDVRRLPCMHLFHVDCIDQWLSSNKRCPICRVDI 736

Query: 70  ETHLNKD 76
           ET   KD
Sbjct: 737 ETKETKD 743

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604467|gb|EHJ64200.1| hypothetical protein KGM_14148 [Danaus plexippus]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/37 (91%), Positives = 36/37 (97%)

Query: 40  RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
           RLPCMHLFH+ECVDQWLS+NK CPICRVDIETHLNKD
Sbjct: 834 RLPCMHLFHMECVDQWLSTNKHCPICRVDIETHLNKD 870

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054421|ref|XP_001994123.1| GH17353 [Drosophila grimshawi] gi|193895993|gb|EDV94859.1| GH17353 [Drosophila grimshawi]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/42 (76%), Positives = 36/42 (85%)

Query: 40   RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT 81
            RLPCMHLFH +CVDQWL +NK CPICRVDIETH+ KD L P+
Sbjct: 1611 RLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMAKDALVPS 1652

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195395880|ref|XP_002056562.1| GJ11010 [Drosophila virilis] gi|194143271|gb|EDW59674.1| GJ11010 [Drosophila virilis]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/42 (76%), Positives = 36/42 (85%)

Query: 40   RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT 81
            RLPCMHLFH +CVDQWL +NK CPICRVDIETH+ KD L P+
Sbjct: 1417 RLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMAKDALVPS 1458

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446140|ref|XP_002070646.1| GK10924 [Drosophila willistoni] gi|194166731|gb|EDW81632.1| GK10924 [Drosophila willistoni]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query: 40   RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQP 80
            RLPCMHLFH +CVDQWL +NK CPICRVDIETH+ KD L P
Sbjct: 1353 RLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMAKDALGP 1393

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194901950|ref|XP_001980514.1| GG17197 [Drosophila erecta] gi|190652217|gb|EDV49472.1| GG17197 [Drosophila erecta]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 6/65 (9%)

Query: 17   KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
            ++C IC    E            RLPCMHLFH +CVDQWL +NK CPICRVDIETH+  D
Sbjct: 1180 EKCAICLTLFEIE------NEVRRLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMPND 1233

Query: 77   LLQPT 81
             L P+
Sbjct: 1234 ALAPS 1238

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195501805|ref|XP_002097951.1| GE10089 [Drosophila yakuba] gi|194184052|gb|EDW97663.1| GE10089 [Drosophila yakuba]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 6/65 (9%)

Query: 17   KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 76
            ++C IC    E            RLPCMHLFH +CVDQWL +NK CPICRVDIETH+  D
Sbjct: 1188 EKCAICLTLFEIE------NEVRRLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMPND 1241

Query: 77   LLQPT 81
             L P+
Sbjct: 1242 ALAPS 1246

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51092240|gb|AAT94533.1| AT15166p [Drosophila melanogaster]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 10/67 (14%)

Query: 17   KRCPICR--VDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
            ++C IC    +IE  +         RLPCMHLFH +CVDQWL +NK CPICRVDIETH+ 
Sbjct: 1185 EKCAICLNLFEIENEVR--------RLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMP 1236

Query: 75   KDLLQPT 81
             D L P+
Sbjct: 1237 NDALPPS 1243

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21356709|ref|NP_650112.1| CG6923, isoform A [Drosophila melanogaster] gi|24646071|ref|NP_731623.1| CG6923, isoform B [Drosophila melanogaster] gi|386765608|ref|NP_001247056.1| CG6923, isoform C [Drosophila melanogaster] gi|7299505|gb|AAF54693.1| CG6923, isoform A [Drosophila melanogaster] gi|16197957|gb|AAL13749.1| LD22771p [Drosophila melanogaster] gi|23171037|gb|AAN13524.1| CG6923, isoform B [Drosophila melanogaster] gi|211938579|gb|ACJ13186.1| FI06048p [Drosophila melanogaster] gi|220947268|gb|ACL86177.1| CG6923-PA [synthetic construct] gi|220956714|gb|ACL90900.1| CG6923-PA [synthetic construct] gi|383292652|gb|AFH06374.1| CG6923, isoform C [Drosophila melanogaster]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 10/67 (14%)

Query: 17   KRCPICR--VDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
            ++C IC    +IE  +         RLPCMHLFH +CVDQWL +NK CPICRVDIETH+ 
Sbjct: 1185 EKCAICLNLFEIENEVR--------RLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMP 1236

Query: 75   KDLLQPT 81
             D L P+
Sbjct: 1237 NDALPPS 1243

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
ZFIN|ZDB-GENE-081104-369	347	rnf165b "ring finger protein 1	0.753	0.175	0.522	5.3e-14
FB|FBgn0037944	1256	CG6923 [Drosophila melanogaste	0.518	0.033	0.738	2.1e-13
UNIPROTKB|Q6ZSG1	346	RNF165 "RING finger protein 16	0.691	0.161	0.532	2.5e-12
UNIPROTKB|F1PHU2	347	RNF165 "Uncharacterized protei	0.691	0.161	0.532	2.5e-12
MGI|MGI:2444521	347	Rnf165 "ring finger protein 16	0.691	0.161	0.532	2.5e-12
RGD|1560744	348	Rnf165 "ring finger protein 16	0.691	0.160	0.532	2.5e-12
UNIPROTKB|F1RPS5	327	RNF165 "Uncharacterized protei	0.691	0.171	0.532	2.6e-12
UNIPROTKB|I3LPH2	329	RNF165 "Uncharacterized protei	0.691	0.170	0.532	2.7e-12
UNIPROTKB|F1MJP2	350	RNF165 "Uncharacterized protei	0.691	0.16	0.532	3.3e-12
ZFIN|ZDB-GENE-091118-64	311	rnf165a "ring finger protein 1	0.753	0.196	0.462	6.3e-12

ZFIN|ZDB-GENE-081104-369 rnf165b "ring finger protein 165b" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 35/67 (52%), Positives = 48/67 (71%)

Query:    10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
             ++ L ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL++NK+CPICRVDI
Sbjct:   286 EEELDTDEKCTICLSMLEDE--EDVR----RLPCMHLFHQACVDQWLATNKKCPICRVDI 339

Query:    70 ETHLNKD 76
             ET L+ D
Sbjct:   340 ETQLSPD 346

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0037944 CG6923 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 31/42 (73%), Positives = 35/42 (83%)

Query:    40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPT 81
             RLPCMHLFH +CVDQWL +NK CPICRVDIETH+  D L P+
Sbjct:  1202 RLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMPNDALPPS 1243

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q6ZSG1 RNF165 "RING finger protein 165" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   290 TDEKCTICLSMLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 343

Query:    75 KD 76
              D
Sbjct:   344 AD 345

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PHU2 RNF165 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   291 TDEKCTICLSMLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 344

Query:    75 KD 76
              D
Sbjct:   345 AD 346

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2444521 Rnf165 "ring finger protein 165" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   291 TDEKCTICLSMLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 344

Query:    75 KD 76
              D
Sbjct:   345 AD 346

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1560744 Rnf165 "ring finger protein 165" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   292 TDEKCTICLSMLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 345

Query:    75 KD 76
              D
Sbjct:   346 AD 347

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RPS5 RNF165 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   271 TDEKCTICLSLLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 324

Query:    75 KD 76
              D
Sbjct:   325 AD 326

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3LPH2 RNF165 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   273 TDEKCTICLSLLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 326

Query:    75 KD 76
              D
Sbjct:   327 AD 328

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1MJP2 RNF165 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query:    15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
             ++++C IC   +E    +D+     RLPCMHLFH  CVDQWL+ +K+CPICRVDIET L 
Sbjct:   294 TDEKCTICLSLLED--GEDVR----RLPCMHLFHQLCVDQWLAMSKKCPICRVDIETQLG 347

Query:    75 KD 76
              D
Sbjct:   348 AD 349

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-091118-64 rnf165a "ring finger protein 165a" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query:    10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
             D+    +++C IC   +E    +D+     RLPCMHLFH  CVDQWL+++++CPICRVDI
Sbjct:   250 DEESDVDEKCTICLSMLED--GEDVR----RLPCMHLFHQACVDQWLATSRKCPICRVDI 303

Query:    70 ETHLNKD 76
             +T L+ +
Sbjct:   304 QTQLSPE 310

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R476	RN111_PONAB	6, ., 3, ., 2, ., -	0.7941	0.4197	0.0344	yes	N/A
Q6ZSG1	RN165_HUMAN	No assigned EC number	0.5322	0.6913	0.1618	yes	N/A
Q99ML9	RN111_MOUSE	6, ., 3, ., 2, ., -	0.7941	0.4197	0.0343	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	9e-09
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	5e-08
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	9e-07
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-06
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-05
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-05
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-05
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.001
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	0.001
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.001
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	0.003

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 50.0 bits (119), Expect = 9e-09
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 9   VDQWLSSNKRCPICRVDI----ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPI 64
            +Q  +S++ C IC  ++       L + L     RLPC H+ H+ C+  WL   + CPI
Sbjct: 280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPI 339

Query: 65  CR 66
           CR
Sbjct: 340 CR 341

Length = 491

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 44.3 bits (105), Expect = 5e-08
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
          CPIC  + E        +    LPC H+FH EC+D+WL S+  CP+CR
Sbjct: 3  CPICLDEFEPG------EEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 9    VDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWL--SSNKRCPIC 65
            +D+  S ++ C IC   ++     D   P+ R   C + FH  C+ +W   S+   CP+C
Sbjct: 1462 IDEKFSGHEECAICYSVLDMV---DRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLC 1518

Query: 66   RVDI 69
            R +I
Sbjct: 1519 RSEI 1522

Length = 1525

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 41  LPCMHLFHVECVDQWLSSNK-RCPICRVDI 69
           LPC H FHV CVD+WL     +CP+CR  I
Sbjct: 342 LPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 38.2 bits (89), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
              CPIC           L  P    PC H+F  EC+ ++L    +CPICR
Sbjct: 1  EELECPIC--------LDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 38.2 bits (89), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%)

Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICRVDI 69
          CPIC         ++  +P   LPC H+F   C+D+WL S    CP+CR  I
Sbjct: 2  CPIC--------LEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 38.2 bits (89), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 12 WLSSNKRCPICRVDIETHLNKDLLQ----PTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
          W   +  C ICR   +    +        P     C H FH+ C+ +WL +   CP+CR
Sbjct: 15 WDIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 2  HLFHVECVDQWLSSNKRCPICR 23
          H+FH EC+D+WL S+  CP+CR
Sbjct: 23 HVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 43  CMHLFHVECVDQWLSSNKRCPICRV 67
           C H+F +EC+D W      CP+CR 
Sbjct: 200 CNHVFCIECIDIWKKEKNTCPVCRT 224

Length = 238

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 2   HLFHVECVDQWLSSNKRCPICR 23
           H+ H+ C+  WL   + CPICR
Sbjct: 320 HILHLHCLKNWLERQQTCPICR 341

Length = 491

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 2   HLFHVECVDQWLSSNK-RCPICRVDI 26
           H FHV CVD+WL     +CP+CR  I
Sbjct: 346 HRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 2   HLFHVECVDQWLSSNKRCPICRV 24
           H+F +EC+D W      CP+CR 
Sbjct: 202 HVFCIECIDIWKKEKNTCPVCRT 224

Length = 238

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 32.4 bits (74), Expect = 0.003
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 2  HLFHVECVDQWLSSNKRCPICR 23
          H FH+ C+ +WL +   CP+CR
Sbjct: 52 HAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.62
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.53
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.47
KOG4628|consensus	348		99.41
PHA02929	238	N1R/p28-like protein; Provisional	99.4
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.34
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.31
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.25
PHA02926	242	zinc finger-like protein; Provisional	99.25
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.22
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.22
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.2
KOG0320|consensus	187		99.17
KOG0802|consensus	543		99.16
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.13
KOG0317|consensus	293		99.12
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.08
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	99.05
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.05
PF14634	44	zf-RING_5: zinc-RING finger domain	99.04
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.04
KOG1493|consensus	84		99.03
KOG0823|consensus	230		99.01
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.98
KOG0287|consensus	442		98.85
KOG1734|consensus	328		98.82
KOG2930|consensus	114		98.79
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.72
KOG2164|consensus	513		98.7
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.65
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.63
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.62
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.62
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.61
KOG0828|consensus	636		98.61
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.59
KOG2177|consensus	386		98.45
KOG0297|consensus	391		98.41
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.32
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.31
KOG1039|consensus	344		98.29
KOG4265|consensus	349		98.27
KOG0804|consensus	493		98.2
KOG0824|consensus	324		98.08
KOG0978|consensus	698		98.06
KOG4172|consensus	62		97.99
KOG0311|consensus	381		97.86
KOG0827|consensus	465		97.85
KOG4159|consensus	398		97.78
KOG2879|consensus	298		97.68
KOG3970|consensus	299		97.61
KOG0825|consensus	1134		97.6
KOG1941|consensus	518		97.57
KOG2660|consensus	331		97.53
KOG1785|consensus	563		97.48
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.45
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.44
KOG1645|consensus	463		97.44
KOG1002|consensus	791		97.38
COG5152	259	Uncharacterized conserved protein, contains RING a	97.31
KOG1428|consensus	3738		97.3
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.23
KOG1813|consensus	313		97.19
KOG4445|consensus	368		97.19
KOG1952|consensus	950		97.09
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.99
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	96.9
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.75
PHA02862	156	5L protein; Provisional	96.62
KOG4692|consensus	489		96.62
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.6
PF04641	260	Rtf2: Rtf2 RING-finger	96.52
KOG4185|consensus	296		96.51
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.48
KOG1814|consensus	445		96.46
KOG1940|consensus	276		96.45
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.35
KOG3268|consensus	234		96.29
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.23
KOG3039|consensus	303		96.19
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.12
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.11
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.08
PHA02929	238	N1R/p28-like protein; Provisional	96.05
PHA03096	284	p28-like protein; Provisional	96.04
KOG2817|consensus	394		96.03
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	96.02
KOG0826|consensus	357		96.01
KOG2114|consensus	933		95.79
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	95.62
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	95.51
KOG4275|consensus	350		95.46
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.39
KOG0801|consensus	205		95.36
KOG1571|consensus	355		95.2
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	95.11
KOG3800|consensus	300		94.77
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	94.72
KOG4739|consensus	233		94.6
KOG4628|consensus	348		94.54
KOG2932|consensus	389		94.53
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	94.52
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	94.44
KOG2930|consensus	114		94.4
KOG2034|consensus	911		94.35
KOG4367|consensus	699		94.35
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.11
KOG4362|consensus	684		94.08
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	93.98
KOG0309|consensus	1081		93.73
KOG1812|consensus	384		93.42
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.39
KOG4718|consensus	235		93.07
KOG1493|consensus	84		92.92
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	92.81
KOG0802|consensus	543		92.7
KOG3002|consensus	299		92.45
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	92.25
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	91.71
KOG1001|consensus	674		91.56
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.02
KOG3053|consensus	293		90.41
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	90.11
KOG1100|consensus	207		89.96
KOG0317|consensus	293		89.85
KOG0827|consensus	465		89.48
PHA02926	242	zinc finger-like protein; Provisional	88.92
KOG0298|consensus	1394		88.62
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	88.37
KOG3899|consensus	381		88.3
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	86.84
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	85.42
COG5109	396	Uncharacterized conserved protein, contains RING Z	84.93
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	84.87
KOG0825|consensus	1134		83.98
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	83.9
KOG0828|consensus	636		83.4
KOG3113|consensus	293		81.33
KOG1609|consensus	323		80.29
KOG0269|consensus	839		80.05

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.62  E-value=9e-17  Score=76.78  Aligned_cols=44  Identities=43%  Similarity=1.149  Sum_probs=38.0

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR   66 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr   66 (81)
                      +.|+||++.+..      ...+..++|+|.||..||.+|++++.+||+||
T Consensus         1 d~C~IC~~~~~~------~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFED------GEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHT------TSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcC------CCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            369999999976      56677889999999999999999889999996

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.4e-14  Score=94.50  Aligned_cols=66  Identities=30%  Similarity=0.720  Sum_probs=50.8

Q ss_pred             HhhhcCCcccccccccc-ccccccC---cCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccccc
Q psy14787         10 DQWLSSNKRCPICRVDI-ETHLNKD---LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNK   75 (81)
Q Consensus        10 ~~~~~~~~~C~iC~~~~-~~~~~~~---~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   75 (81)
                      ++.-.+|..|.|||+.+ ..+....   ....+.++||||.+|.+|++.|++++++||.||.++-.+..+
T Consensus       281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~~  350 (491)
T COG5243         281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSS  350 (491)
T ss_pred             hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence            34457788999999984 3322111   134578999999999999999999999999999997655544

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.47  E-value=1.7e-14  Score=75.67  Aligned_cols=55  Identities=38%  Similarity=0.915  Sum_probs=39.0

Q ss_pred             hhcCCccccccccccccccccCc----CCCCcccCCCCcccHhhHHHHHhCCCCCCCCc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDL----LQPTWRLPCMHLFHVECVDQWLSSNKRCPICR   66 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~----~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr   66 (81)
                      |-..++.|+||++.+........    ...+...+|||.||..||.+|+..+.+||+||
T Consensus        15 ~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   15 WDIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             ESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             ecCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            33446679999999954321111    12234457999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4628|consensus

Probab=99.41  E-value=8.3e-14  Score=90.53  Aligned_cols=51  Identities=43%  Similarity=0.966  Sum_probs=45.0

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETHLN   74 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~~~   74 (81)
                      .|+||+++|..      ++..+.|||+|.||..||..|+...+ .||+|+..+.....
T Consensus       231 ~CaIClEdY~~------GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  231 TCAICLEDYEK------GDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             eEEEeeccccc------CCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence            89999999988      88899999999999999999997665 49999998765543

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.40  E-value=3.1e-13  Score=84.39  Aligned_cols=61  Identities=25%  Similarity=0.615  Sum_probs=44.6

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD   76 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   76 (81)
                      .+..|+||++.+.... ..........+|+|.||..||.+|+..+.+||+||..+.....+.
T Consensus       173 ~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r  233 (238)
T PHA02929        173 KDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSR  233 (238)
T ss_pred             CCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence            4678999999875411 000011345679999999999999999999999999887655443

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.34  E-value=7.9e-13  Score=70.58  Aligned_cols=59  Identities=29%  Similarity=0.666  Sum_probs=43.2

Q ss_pred             cCCccccccccccccccccC--cCC--CCcccCCCCcccHhhHHHHHhC---CCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKD--LLQ--PTWRLPCMHLFHVECVDQWLSS---NKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~--~~~--~~~~~~C~h~fh~~Ci~~~~~~---~~~CP~Cr~~~~~~   72 (81)
                      .+++.|+||+..|+...+.-  +++  ......|+|.||..||.+|+++   ++.||+||+++..+
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            45889999999998543322  122  1233459999999999999975   35699999988653

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.31  E-value=1e-12  Score=64.21  Aligned_cols=48  Identities=44%  Similarity=0.955  Sum_probs=39.4

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      ++..|.||++....         +..++|||. |+..|+.+|+.....||+||+++..
T Consensus         1 ~~~~C~iC~~~~~~---------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    1 EDEECPICFENPRD---------VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             -HSB-TTTSSSBSS---------EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             CcCCCccCCccCCc---------eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            35689999987644         778899999 9999999999988999999998753

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.25  E-value=5.7e-12  Score=76.34  Aligned_cols=53  Identities=25%  Similarity=0.652  Sum_probs=41.9

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----------------CCCCCCCcccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----------------NKRCPICRVDIETHLNK   75 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----------------~~~CP~Cr~~~~~~~~~   75 (81)
                      .++..|+||++.+..         +..++|||.||..||..|+..                ...||+|+..+......
T Consensus        16 ~~~~~CpICld~~~d---------PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv   84 (193)
T PLN03208         16 GGDFDCNICLDQVRD---------PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV   84 (193)
T ss_pred             CCccCCccCCCcCCC---------cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence            356789999998755         677889999999999999742                23699999998754433

>PHA02926 zinc finger-like protein; Provisional

Probab=99.25  E-value=7.7e-12  Score=77.02  Aligned_cols=63  Identities=24%  Similarity=0.526  Sum_probs=43.9

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC------CCCCCCccccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN------KRCPICRVDIETHLNKD   76 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~   76 (81)
                      +.+..|+||++.+...............+|+|.||..||..|....      ..||+||..+.....++
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr  236 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSK  236 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence            4578899999976432111112234556799999999999998643      35999999887655443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.22  E-value=5.2e-12  Score=58.72  Aligned_cols=39  Identities=41%  Similarity=1.118  Sum_probs=31.7

Q ss_pred             ccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC   65 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~C   65 (81)
                      |+||++.+..        ....++|||.|+..|+.+|++.+..||.|
T Consensus         1 C~iC~~~~~~--------~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--------PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--------EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--------cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            7899988754        23678999999999999999988889987

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.22  E-value=6.5e-12  Score=59.35  Aligned_cols=38  Identities=34%  Similarity=0.809  Sum_probs=29.4

Q ss_pred             ccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC----CCCCCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN----KRCPIC   65 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~----~~CP~C   65 (81)
                      |+||++.|..         ++.++|||+|+..||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~---------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999977         8899999999999999998653    259887

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=7.5e-12  Score=80.03  Aligned_cols=50  Identities=40%  Similarity=0.915  Sum_probs=43.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCcccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIET   71 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~   71 (81)
                      +-+|+|||+.+-.      .+..+.+||.|.||..|+..|+. -+..||+||..++.
T Consensus       323 GveCaICms~fiK------~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIK------NDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcc------cceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4579999999965      66788999999999999999996 67789999998763

>KOG0320|consensus

Probab=99.17  E-value=1.4e-11  Score=73.54  Aligned_cols=54  Identities=26%  Similarity=0.658  Sum_probs=44.1

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      .+...|+||++.+..       ..+....|||+||..||...+.....||+|+..++.+..
T Consensus       129 ~~~~~CPiCl~~~se-------k~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~  182 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSE-------KVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF  182 (187)
T ss_pred             ccccCCCceecchhh-------ccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence            345679999999876       223557799999999999999999999999988776544

>KOG0802|consensus

Probab=99.16  E-value=1.6e-11  Score=84.27  Aligned_cols=55  Identities=33%  Similarity=0.782  Sum_probs=44.9

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      ....+..|+||++.+....+    ..+.+++|+|.||..|+..|+++.++||.||..+.
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~----~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHN----ITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hhhcCCeeeeechhhccccc----cccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            44557889999999865211    33678999999999999999999999999999443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.13  E-value=4.9e-11  Score=56.05  Aligned_cols=44  Identities=45%  Similarity=1.158  Sum_probs=34.6

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCcccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDI   69 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~   69 (81)
                      .|+||++.+..        .....+|+|.||..|+..|+.. ...||.|+..+
T Consensus         1 ~C~iC~~~~~~--------~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFRE--------PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhC--------ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            48999988732        2344559999999999999987 66799998753

>KOG0317|consensus

Probab=99.12  E-value=4.3e-11  Score=75.89  Aligned_cols=49  Identities=27%  Similarity=0.814  Sum_probs=42.6

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ....|.+|++..+.         +..+||||.||-.||..|......||+||..+...
T Consensus       238 a~~kC~LCLe~~~~---------pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  238 ATRKCSLCLENRSN---------PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCceEEEecCCCC---------CCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            35679999988655         88999999999999999999888999999987654

>smart00504 Ubox Modified RING finger domain

Probab=99.08  E-value=1.6e-10  Score=58.53  Aligned_cols=47  Identities=19%  Similarity=0.385  Sum_probs=41.0

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ..|+||.+.+..         ++.++|||+|+..||.+|+..+..||.|+..+...
T Consensus         2 ~~Cpi~~~~~~~---------Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~   48 (63)
T smart00504        2 FLCPISLEVMKD---------PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHE   48 (63)
T ss_pred             cCCcCCCCcCCC---------CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence            469999999866         67889999999999999998888899999887543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=99.05  E-value=1.3e-10  Score=61.04  Aligned_cols=59  Identities=25%  Similarity=0.412  Sum_probs=42.0

Q ss_pred             CCccccccccccccccccCc------CCCCcc-cCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDL------LQPTWR-LPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~------~~~~~~-~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      .-+.|+||+..+......-.      .+.+.. ..|+|.||..||.+|+..+..||++++.+....
T Consensus        19 ~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~   84 (88)
T COG5194          19 PIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD   84 (88)
T ss_pred             ccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence            34679999887755332211      112222 239999999999999999999999999886543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.05  E-value=1.1e-10  Score=54.66  Aligned_cols=39  Identities=41%  Similarity=1.091  Sum_probs=31.8

Q ss_pred             ccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh--CCCCCCCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS--SNKRCPIC   65 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~--~~~~CP~C   65 (81)
                      |+||++.+...        ...++|||.|+..|+.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~--------~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--------VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--------EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--------CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            78999987651        23788999999999999998  34469987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.04  E-value=1.9e-10  Score=54.76  Aligned_cols=44  Identities=27%  Similarity=0.674  Sum_probs=36.0

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRV   67 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~   67 (81)
                      .|++|.+.+..      ...+..++|||+|+..|+..+......||+|++
T Consensus         1 ~C~~C~~~~~~------~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSE------ERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccC------CCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            48999998843      345778899999999999998855667999974

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.04  E-value=2.3e-10  Score=76.00  Aligned_cols=50  Identities=28%  Similarity=0.698  Sum_probs=42.9

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .....|+||.+.+..         ++.++|+|.||..||..|+.....||+|+..+...
T Consensus        24 e~~l~C~IC~d~~~~---------PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDV---------PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhC---------ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            446789999998866         66789999999999999998878899999987643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493|consensus

Probab=99.03  E-value=6.6e-11  Score=61.67  Aligned_cols=62  Identities=26%  Similarity=0.680  Sum_probs=44.6

Q ss_pred             hhhcCCccccccccccccccccCc--C-CCCccc-CCCCcccHhhHHHHHhCC---CCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDL--L-QPTWRL-PCMHLFHVECVDQWLSSN---KRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~--~-~~~~~~-~C~h~fh~~Ci~~~~~~~---~~CP~Cr~~~~~~   72 (81)
                      .|...+..|.||+-.|+...+.-.  + +.+..+ .|.|.||..||.+|+...   ..||+||+.+...
T Consensus        15 tW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~   83 (84)
T KOG1493|consen   15 TWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK   83 (84)
T ss_pred             EEcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence            456677899999999976444332  1 122222 499999999999999543   4599999988643

>KOG0823|consensus

Probab=99.01  E-value=2.2e-10  Score=70.81  Aligned_cols=53  Identities=30%  Similarity=0.633  Sum_probs=42.0

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC---CCCCCCcccccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN---KRCPICRVDIETHLNKDL   77 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~   77 (81)
                      ..+|.||++.-+.         ++...|||.||--||.+|+...   +.||+|+..+......++
T Consensus        47 ~FdCNICLd~akd---------PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   47 FFDCNICLDLAKD---------PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL  102 (230)
T ss_pred             ceeeeeeccccCC---------CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence            4579999887544         7788899999999999999654   349999998876654443

>smart00184 RING Ring finger

Probab=98.98  E-value=5e-10  Score=50.87  Aligned_cols=38  Identities=45%  Similarity=1.177  Sum_probs=31.0

Q ss_pred             ccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPIC   65 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~C   65 (81)
                      |+||++....         +..++|+|.||..|+..|+. ....||.|
T Consensus         1 C~iC~~~~~~---------~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKD---------PVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCC---------cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            6788877433         67788999999999999997 55569987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0287|consensus

Probab=98.85  E-value=7e-10  Score=72.13  Aligned_cols=50  Identities=30%  Similarity=0.603  Sum_probs=44.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      -+.|.||.+.|..         ++..||+|.||..||..++..+..||.|...++...-
T Consensus        23 lLRC~IC~eyf~i---------p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L   72 (442)
T KOG0287|consen   23 LLRCGICFEYFNI---------PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL   72 (442)
T ss_pred             HHHHhHHHHHhcC---------ceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence            4679999999977         8888999999999999999999999999998876543

>KOG1734|consensus

Probab=98.82  E-value=5e-10  Score=70.82  Aligned_cols=70  Identities=21%  Similarity=0.689  Sum_probs=50.4

Q ss_pred             ccchhhHHhhhcCCccccccccccccccccC-cCCCCcccCCCCcccHhhHHHHHh--CCCCCCCCccccccc
Q psy14787          3 LFHVECVDQWLSSNKRCPICRVDIETHLNKD-LLQPTWRLPCMHLFHVECVDQWLS--SNKRCPICRVDIETH   72 (81)
Q Consensus         3 ~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~-~~~~~~~~~C~h~fh~~Ci~~~~~--~~~~CP~Cr~~~~~~   72 (81)
                      +|..+.++..-.++..|++|.+.+......+ ..+....+.|+|+||..||..|--  .+++||.|+..+...
T Consensus       211 fYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  211 FYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             ccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            4455555554556788999999887643211 123467789999999999999964  456799999887644

>KOG2930|consensus

Probab=98.79  E-value=1.5e-09  Score=59.62  Aligned_cols=59  Identities=25%  Similarity=0.502  Sum_probs=41.0

Q ss_pred             cCCccccccccccccccccC-------cCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKD-------LLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~-------~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ...+.|+||+.-+......-       ..+..+.. -|+|.||..||.+|++..+.||++.+.+...
T Consensus        44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~q  110 (114)
T KOG2930|consen   44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVFQ  110 (114)
T ss_pred             eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence            44567999988664322111       11212222 3999999999999999999999999887643

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=7e-09  Score=65.32  Aligned_cols=49  Identities=29%  Similarity=0.758  Sum_probs=40.6

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHH-HHhCCCC-CCCCccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ-WLSSNKR-CPICRVDIETH   72 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~-~~~~~~~-CP~Cr~~~~~~   72 (81)
                      .+..|+||++..+.         +..++|||+||..||.. |-..+.. ||+||+....+
T Consensus       214 ~d~kC~lC~e~~~~---------ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         214 ADYKCFLCLEEPEV---------PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             cccceeeeecccCC---------cccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            37789999998655         88899999999999999 8766655 99999876543

>KOG2164|consensus

Probab=98.70  E-value=1.4e-08  Score=68.81  Aligned_cols=48  Identities=33%  Similarity=0.719  Sum_probs=39.4

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-----CCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-----KRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-----~~CP~Cr~~~~~~   72 (81)
                      +..||||++....         +.++.|||+||..||.+++..+     ..||+|+..+...
T Consensus       186 ~~~CPICL~~~~~---------p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---------PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCc---------ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            7789999987544         6677799999999999998654     3599999988763

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.65  E-value=1.2e-08  Score=65.42  Aligned_cols=48  Identities=31%  Similarity=0.663  Sum_probs=42.2

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      -+.|-||...+..         +...+|||.||..||.+.+..+..||+||......
T Consensus        25 ~lrC~IC~~~i~i---------p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          25 MLRCRICDCRISI---------PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             HHHhhhhhheeec---------ceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            3569999999876         77889999999999999999999999999876544

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.63  E-value=5.6e-09  Score=54.28  Aligned_cols=54  Identities=24%  Similarity=0.556  Sum_probs=24.3

Q ss_pred             CccccccccccccccccCcCCCCcc--cCCCCcccHhhHHHHHhC---C--------CCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWR--LPCMHLFHVECVDQWLSS---N--------KRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~--~~C~h~fh~~Ci~~~~~~---~--------~~CP~Cr~~~~~~   72 (81)
                      +..|+||+..+...  +. ......  ..|+..||..||.+|+..   .        +.||.|+.++..+
T Consensus         2 ~~~C~IC~~~~~~~--~~-~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    2 ELECGICYSYRLDD--GE-IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             --S-SSS--SS-TT--------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCCcCCcEecCC--CC-cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            45799999876520  00 011111  359999999999999853   1        2499999988654

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.62  E-value=2.4e-08  Score=52.23  Aligned_cols=50  Identities=20%  Similarity=0.387  Sum_probs=39.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCcccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETHL   73 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~~   73 (81)
                      +...|+|+.+.|..         ++.+++||+|...+|.+|+.. +..||.++..+....
T Consensus         3 ~~f~CpIt~~lM~d---------PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~   53 (73)
T PF04564_consen    3 DEFLCPITGELMRD---------PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD   53 (73)
T ss_dssp             GGGB-TTTSSB-SS---------EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred             cccCCcCcCcHhhC---------ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence            46789999999877         888999999999999999988 778999998887643

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.62  E-value=1.8e-08  Score=47.69  Aligned_cols=35  Identities=34%  Similarity=0.859  Sum_probs=21.3

Q ss_pred             ccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN   59 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~   59 (81)
                      |+||.+ +...     ...++.++|||+|+.+|+.++.+.+
T Consensus         1 CpIc~e-~~~~-----~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTE-----ENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TT-----SS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCC-----CCCCEEEeCccHHHHHHHHHHHhcC
Confidence            899999 6431     3446789999999999999998743

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.61  E-value=1.8e-08  Score=72.59  Aligned_cols=63  Identities=27%  Similarity=0.688  Sum_probs=45.1

Q ss_pred             hhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--CCCCCCcccccc
Q psy14787          7 ECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICRVDIET   71 (81)
Q Consensus         7 ~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~   71 (81)
                      +.|...+++..+|+||...+......  ........|.|.||..|+..|++++  ++||+||..++.
T Consensus      1460 kNi~~~fsG~eECaICYsvL~~vdr~--lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1460 KNIDEKFSGHEECAICYSVLDMVDRS--LPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             hhhhhhcCCcchhhHHHHHHHHHhcc--CCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence            44556678889999999887631110  1122344599999999999999764  469999987653

>KOG0828|consensus

Probab=98.61  E-value=2.1e-08  Score=67.96  Aligned_cols=58  Identities=29%  Similarity=0.718  Sum_probs=41.6

Q ss_pred             cCCccccccccccccccccCc--------CCCCcccCCCCcccHhhHHHHHhCCC-CCCCCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDL--------LQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~--------~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~   71 (81)
                      .....|+|||..++--..+..        ..-.+..||.|.||..|+.+|...-+ .||+||.++..
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            445679999998754211111        11245679999999999999998544 79999998753

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.59  E-value=7.5e-08  Score=62.23  Aligned_cols=55  Identities=20%  Similarity=0.437  Sum_probs=38.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCcccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETHL   73 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~~   73 (81)
                      ++..||+|......+    +.......+|||.||..|+...+..+ ..||.|+..+....
T Consensus         2 d~~~CP~Ck~~~y~n----p~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         2 DDQGCPRCKTTKYRN----PSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCCcCCCCCccC----cccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            457899999843220    01112233799999999999977544 46999999887654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177|consensus

Probab=98.45  E-value=1.2e-07  Score=59.42  Aligned_cols=47  Identities=32%  Similarity=0.704  Sum_probs=39.9

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR   66 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr   66 (81)
                      ..+.+...|+||++.|..         +..++|+|.|+..|+..+......||.||
T Consensus         8 ~~~~~~~~C~iC~~~~~~---------p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFRE---------PVLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             hhccccccChhhHHHhhc---------CccccccchHhHHHHHHhcCCCcCCcccC
Confidence            445667889999999977         57889999999999999988445699999

>KOG0297|consensus

Probab=98.41  E-value=1.1e-07  Score=63.38  Aligned_cols=64  Identities=27%  Similarity=0.579  Sum_probs=53.7

Q ss_pred             CcccchhhHHhhhcCCccccccccccccccccCcCCCCcc-cCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWR-LPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~-~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      ++.|+.+...+.+.+++.|++|+..+..         +.. ..|||.||..|+..|+.....||.|+..+....
T Consensus         6 ~~~~~~~~~~~~~~~~l~C~~C~~vl~~---------p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen    6 TMGFDLKHLGRPLDENLLCPICMSVLRD---------PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE   70 (391)
T ss_pred             cccccccccCCCCcccccCccccccccC---------CCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence            4678888888888889999999999866         444 589999999999999998889999988776543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.32  E-value=4.8e-07  Score=43.93  Aligned_cols=42  Identities=31%  Similarity=0.835  Sum_probs=29.7

Q ss_pred             cccccccccccccccCcCCCCcccCCC-----CcccHhhHHHHHhCC--CCCCCCc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCM-----HLFHVECVDQWLSSN--KRCPICR   66 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~-----h~fh~~Ci~~~~~~~--~~CP~Cr   66 (81)
                      .|-||++.. .      ...+...||.     +.+|..|+.+|+..+  ..||+|+
T Consensus         1 ~CrIC~~~~-~------~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-D------EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-C------CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            378998722 2      2335567774     679999999999554  4799984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.31  E-value=8e-08  Score=48.79  Aligned_cols=50  Identities=26%  Similarity=0.627  Sum_probs=24.9

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+-..|++|.+.+..        ++....|.|+|+..|+.+-+.  ..||+|+.+-...
T Consensus         4 le~lLrCs~C~~~l~~--------pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q   53 (65)
T PF14835_consen    4 LEELLRCSICFDILKE--------PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ   53 (65)
T ss_dssp             HHHTTS-SSS-S--SS---------B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred             HHHhcCCcHHHHHhcC--------CceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence            3445679999998865        234567999999999987544  3499998876433

>KOG1039|consensus

Probab=98.29  E-value=5.1e-07  Score=59.33  Aligned_cols=61  Identities=28%  Similarity=0.551  Sum_probs=42.7

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh--C-----CCCCCCCccccccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS--S-----NKRCPICRVDIETHLNKD   76 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~--~-----~~~CP~Cr~~~~~~~~~~   76 (81)
                      .+..|.||++.+.... ..........+|.|.|+..||..|..  +     .+.||.||..........
T Consensus       160 ~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~  227 (344)
T KOG1039|consen  160 SEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSS  227 (344)
T ss_pred             ccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccc
Confidence            3778999999875522 11111223456999999999999983  3     356999999877666554

>KOG4265|consensus

Probab=98.27  E-value=4.6e-07  Score=59.27  Aligned_cols=50  Identities=38%  Similarity=0.749  Sum_probs=42.1

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      ..+|.||+....+         +..+||+|. .|..|........+.||+||..+.....
T Consensus       290 gkeCVIClse~rd---------t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~  340 (349)
T KOG4265|consen  290 GKECVICLSESRD---------TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLE  340 (349)
T ss_pred             CCeeEEEecCCcc---------eEEecchhhehhHhHHHHHHHhhcCCCccccchHhhhe
Confidence            5679999988654         889999997 8999999887777889999999876544

>KOG0804|consensus

Probab=98.20  E-value=5.8e-07  Score=60.39  Aligned_cols=50  Identities=26%  Similarity=0.773  Sum_probs=38.1

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      .+-.+||+|++.++..     ........|.|.||-.|+..|.  ..+||+||....
T Consensus       173 tELPTCpVCLERMD~s-----~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSS-----TTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCcc-----ccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            4456799999999762     2223445699999999999994  467999988765

>KOG0824|consensus

Probab=98.08  E-value=1.8e-06  Score=55.55  Aligned_cols=50  Identities=28%  Similarity=0.661  Sum_probs=40.8

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCC-CCCCccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDIETHLN   74 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~-CP~Cr~~~~~~~~   74 (81)
                      ...|+||+...         ..+..++|+|.|+..||..-..+... |++||.++.....
T Consensus         7 ~~eC~IC~nt~---------n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~   57 (324)
T KOG0824|consen    7 KKECLICYNTG---------NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID   57 (324)
T ss_pred             CCcceeeeccC---------CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence            45799998874         34789999999999999887766654 9999999986654

>KOG0978|consensus

Probab=98.06  E-value=1.7e-06  Score=61.03  Aligned_cols=54  Identities=20%  Similarity=0.530  Sum_probs=42.2

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETHLNKD   76 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~   76 (81)
                      .+-..|+.|-.....         .+...|+|.||..|+..... +...||.|...+..+....
T Consensus       641 K~~LkCs~Cn~R~Kd---------~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKD---------AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HhceeCCCccCchhh---------HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            446679999866544         66778999999999999885 5667999999987665443

>KOG4172|consensus

Probab=97.99  E-value=1.9e-06  Score=42.40  Aligned_cols=48  Identities=25%  Similarity=0.519  Sum_probs=35.0

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHh-CCCCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLS-SNKRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~-~~~~CP~Cr~~~~~~   72 (81)
                      +.+|.||++.-.+         .+...|||. .+..|-.+.+. .+..||+||+++...
T Consensus         7 ~dECTICye~pvd---------sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv   56 (62)
T KOG4172|consen    7 SDECTICYEHPVD---------SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV   56 (62)
T ss_pred             ccceeeeccCcch---------HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence            4689999875322         345569997 77888776655 567899999988644

>KOG0311|consensus

Probab=97.86  E-value=2e-06  Score=56.40  Aligned_cols=54  Identities=28%  Similarity=0.631  Sum_probs=40.5

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~   72 (81)
                      ..+..+..|+||++.+..        ......|.|.||..||..-+.. ++.||.||+.+...
T Consensus        38 ~~~~~~v~c~icl~llk~--------tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   38 AMFDIQVICPICLSLLKK--------TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             HHhhhhhccHHHHHHHHh--------hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            344557789999998865        1333459999999999887755 45799999877544

>KOG0827|consensus

Probab=97.85  E-value=1e-05  Score=53.88  Aligned_cols=49  Identities=31%  Similarity=0.805  Sum_probs=32.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC---CCCCCCcccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN---KRCPICRVDI   69 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~---~~CP~Cr~~~   69 (81)
                      ...|.|| .++.++.    .+......|||+||..|+.+|+...   ..||.|+..+
T Consensus         4 ~A~C~Ic-~d~~p~~----~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    4 MAECHIC-IDGRPND----HELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             cceeeEe-ccCCccc----cccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            3469999 4443321    1111223499999999999999753   4699998443

>KOG4159|consensus

Probab=97.78  E-value=1.6e-05  Score=53.35  Aligned_cols=49  Identities=31%  Similarity=0.724  Sum_probs=41.9

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      ..+..|.||...+..         ++.++|||.|+..||.+-+.....||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~---------pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP---------PVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCC---------CccccccccccHHHHHHHhccCCCCccccccccc
Confidence            446789999888766         7788999999999999988877789999998874

>KOG2879|consensus

Probab=97.68  E-value=4.7e-05  Score=48.68  Aligned_cols=56  Identities=21%  Similarity=0.511  Sum_probs=39.4

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC--CCCCCCCcccccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS--NKRCPICRVDIETHLNKDL   77 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~   77 (81)
                      ..+.+|++|.+.-..        +-...+|+|+||..|+..-+..  ..+||.|.........+.+
T Consensus       237 t~~~~C~~Cg~~Pti--------P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq~sgv  294 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTI--------PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQASGV  294 (298)
T ss_pred             cCCceeeccCCCCCC--------CeeeccccceeehhhhhhhhcchhhcccCccCCCCcchhhccC
Confidence            346789999886322        2234459999999999887643  3679999988775444433

>KOG3970|consensus

Probab=97.61  E-value=6.9e-05  Score=46.91  Aligned_cols=61  Identities=33%  Similarity=0.815  Sum_probs=44.9

Q ss_pred             chhhHH----hhhcCC---ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC--------CCCCCCCcccc
Q psy14787          5 HVECVD----QWLSSN---KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS--------NKRCPICRVDI   69 (81)
Q Consensus         5 ~~~~~~----~~~~~~---~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~--------~~~CP~Cr~~~   69 (81)
                      |.+||.    +|+.+.   ..|.+|...+..      ++ ..++-|-|.||-+|+..|...        +..||.|..++
T Consensus        32 HpkCiVQSYLqWL~DsDY~pNC~LC~t~La~------gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   32 HPKCIVQSYLQWLQDSDYNPNCRLCNTPLAS------GD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CchhhHHHHHHHHhhcCCCCCCceeCCcccc------Cc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            556664    566553   359999888866      44 567789999999999999754        34699998877


Q ss_pred             ccc
Q psy14787         70 ETH   72 (81)
Q Consensus        70 ~~~   72 (81)
                      ...
T Consensus       105 FPp  107 (299)
T KOG3970|consen  105 FPP  107 (299)
T ss_pred             CCC
Confidence            543

>KOG0825|consensus

Probab=97.60  E-value=1.6e-05  Score=57.03  Aligned_cols=49  Identities=24%  Similarity=0.527  Sum_probs=37.0

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .|++|+..+..      .......+|+|.||..|+..|-....+||+||..+...
T Consensus       125 ~CP~Ci~s~~D------qL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  125 QCPNCLKSCND------QLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhHHHHHHHH------HhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            46666665543      23334556999999999999999999999999877543

>KOG1941|consensus

Probab=97.57  E-value=2.5e-05  Score=52.23  Aligned_cols=47  Identities=34%  Similarity=0.807  Sum_probs=37.0

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--CCCCCCcc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICRV   67 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--~~CP~Cr~   67 (81)
                      +..|..|.+.+.-     +.+....+||.|+||..|+...+.++  .+||-||.
T Consensus       365 ~L~Cg~CGe~~Gl-----k~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGL-----KNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcC-----CcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            5679999988743     13456678999999999999998654  46999984

>KOG2660|consensus

Probab=97.53  E-value=2.8e-05  Score=50.66  Aligned_cols=52  Identities=27%  Similarity=0.632  Sum_probs=41.7

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.....|.+|..+|-.        +....-|-|.||..||..++.....||.|...+...
T Consensus        12 ~n~~itC~LC~GYliD--------ATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLID--------ATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cccceehhhccceeec--------chhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            3456689999998844        334445999999999999999999999998877544

>KOG1785|consensus

Probab=97.48  E-value=5e-05  Score=51.00  Aligned_cols=45  Identities=33%  Similarity=0.826  Sum_probs=35.9

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC--CCCCCCCcccccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS--NKRCPICRVDIET   71 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~--~~~CP~Cr~~~~~   71 (81)
                      .|-||.+.=         ..+..-||||..|..|+..|...  ++.||.||..+.-
T Consensus       371 LCKICaend---------KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAEND---------KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccC---------CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            488997753         33667789999999999999843  5679999998753

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.45  E-value=9.9e-05  Score=36.83  Aligned_cols=42  Identities=31%  Similarity=0.602  Sum_probs=26.8

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC--CCCC
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK--RCPI   64 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~--~CP~   64 (81)
                      ....|||.+..|..+        +....|+|+|-...|.+|+.+++  .||+
T Consensus        10 ~~~~CPiT~~~~~~P--------V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDP--------VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSE--------EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCC--------cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            356799999988662        34457999999999999994433  4998

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.44  E-value=0.00018  Score=34.68  Aligned_cols=44  Identities=25%  Similarity=0.574  Sum_probs=21.3

Q ss_pred             ccccccccccccccCcCCCCccc--CCCCcccHhhHHHHHh-CCCCCCCCcccc
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRL--PCMHLFHVECVDQWLS-SNKRCPICRVDI   69 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~--~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~   69 (81)
                      |++|.+.++.       ......  +|+..++..|..+.+. .++.||.||.+.
T Consensus         1 cp~C~e~~d~-------~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDE-------TDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--C-------CCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCccccccc-------CCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            6889888843       112233  4889999999998886 467899999864

>KOG1645|consensus

Probab=97.44  E-value=7.6e-05  Score=50.05  Aligned_cols=50  Identities=32%  Similarity=0.778  Sum_probs=36.5

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC--CCCCCCCcccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS--NKRCPICRVDI   69 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~--~~~CP~Cr~~~   69 (81)
                      ...|+||++.+..+.    ......+.|||.|...||+.|+..  ...||.|...-
T Consensus         4 g~tcpiclds~~~~g----~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAG----NHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecC----ceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            467999999886521    223445679999999999999952  23599997653

>KOG1002|consensus

Probab=97.38  E-value=5.4e-05  Score=52.45  Aligned_cols=58  Identities=24%  Similarity=0.588  Sum_probs=43.3

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-----CCCCCCCccccccccccccC
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-----NKRCPICRVDIETHLNKDLL   78 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~~~~   78 (81)
                      ...+...|.+|.+.-+.         +....|.|.||..|+..+...     +-+||.|...+....+.+.+
T Consensus       532 enk~~~~C~lc~d~aed---------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al  594 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAED---------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL  594 (791)
T ss_pred             cccCceeecccCChhhh---------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence            33556679999887544         778889999999999888643     34699998888766554433

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.31  E-value=0.0001  Score=45.32  Aligned_cols=44  Identities=25%  Similarity=0.499  Sum_probs=37.6

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI   69 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~   69 (81)
                      ..|.||.+++..         ++...|||.||..|..+-.+.+..|-+|....
T Consensus       197 F~C~iCKkdy~s---------pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYES---------PVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccc---------hhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            469999999876         77888999999999988888888899997653

>KOG1428|consensus

Probab=97.30  E-value=9.7e-05  Score=56.41  Aligned_cols=59  Identities=36%  Similarity=0.798  Sum_probs=41.1

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC----------CCCCCccccccccccccCCC
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK----------RCPICRVDIETHLNKDLLQP   80 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~----------~CP~Cr~~~~~~~~~~~~~~   80 (81)
                      ++.|-||..+--.      ......+.|+|.||..|..+-+++..          +||+|..++.-..-.++++|
T Consensus      3486 DDmCmICFTE~L~------AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldP 3554 (3738)
T KOG1428|consen 3486 DDMCMICFTEALS------AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDP 3554 (3738)
T ss_pred             CceEEEEehhhhC------CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHH
Confidence            5679899764322      23456788999999999988776532          59999988765544444433

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.23  E-value=0.0001  Score=34.60  Aligned_cols=23  Identities=48%  Similarity=1.349  Sum_probs=19.9

Q ss_pred             CcccchhhHHhhhcCCccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICR   23 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~   23 (81)
                      -|.||.+++.+|+.....||+|+
T Consensus        22 ~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen   22 GHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             SEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCeeCHHHHHHHHHhCCcCCccC
Confidence            38999999999999889999984

...

>KOG1813|consensus

Probab=97.19  E-value=0.00015  Score=46.85  Aligned_cols=46  Identities=22%  Similarity=0.437  Sum_probs=39.5

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      ...|-||.+++..         +++..|+|.||..|...-++.+..|.+|.....
T Consensus       241 Pf~c~icr~~f~~---------pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYR---------PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Ccccccccccccc---------chhhcCCceeehhhhccccccCCcceecccccc
Confidence            3459999999876         778899999999999988888889999987654

>KOG4445|consensus

Probab=97.19  E-value=8.9e-05  Score=48.09  Aligned_cols=53  Identities=28%  Similarity=0.662  Sum_probs=40.7

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-----------------------CCCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-----------------------NKRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-----------------------~~~CP~Cr~~~~~~   72 (81)
                      ...|.||+.-|..      .....+++|.|.||..|+.+++..                       .-.||+||..+...
T Consensus       115 ~gqCvICLygfa~------~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  115 NGQCVICLYGFAS------SPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCceEEEEEeecC------CCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            4579999988866      455677889999999999988632                       01499999988765


Q ss_pred             cc
Q psy14787         73 LN   74 (81)
Q Consensus        73 ~~   74 (81)
                      ..
T Consensus       189 ~~  190 (368)
T KOG4445|consen  189 EN  190 (368)
T ss_pred             cc
Confidence            44

>KOG1952|consensus

Probab=97.09  E-value=0.00043  Score=50.12  Aligned_cols=56  Identities=29%  Similarity=0.656  Sum_probs=38.4

Q ss_pred             HhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-------CCCCCCCccccc
Q psy14787         10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-------NKRCPICRVDIE   70 (81)
Q Consensus        10 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-------~~~CP~Cr~~~~   70 (81)
                      .....+..+|.||.+.+...     ........|-|+||..||..|..+       ...||.|.....
T Consensus       185 ~~l~~~~yeCmIC~e~I~~t-----~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~  247 (950)
T KOG1952|consen  185 EQLSNRKYECMICTERIKRT-----APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK  247 (950)
T ss_pred             HHHhcCceEEEEeeeecccc-----CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence            34445677899999988651     111223348999999999999743       235999985443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.99  E-value=0.00015  Score=39.81  Aligned_cols=33  Identities=21%  Similarity=0.690  Sum_probs=26.2

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHH
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVD   53 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~   53 (81)
                      .++..|++|...+..       ......||||.||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-------~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-------SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-------ceEEEeCCCeEEeccccc
Confidence            456779999998854       335677999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=96.90  E-value=0.00061  Score=32.06  Aligned_cols=24  Identities=25%  Similarity=0.866  Sum_probs=15.6

Q ss_pred             CCCCcccHhhHHHHHhCCC--CCCCC
Q psy14787         42 PCMHLFHVECVDQWLSSNK--RCPIC   65 (81)
Q Consensus        42 ~C~h~fh~~Ci~~~~~~~~--~CP~C   65 (81)
                      .|+-.+|..|+..++....  .||.|
T Consensus        18 ~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen   18 DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            4888899999999997655  69987

; PDB: 3NW0_A 2CT0_A.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.75  E-value=0.002  Score=38.29  Aligned_cols=49  Identities=27%  Similarity=0.703  Sum_probs=34.3

Q ss_pred             cCCccccccccccccccccCcCCCCcccCC--CC---cccHhhHHHHHhCCC--CCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPC--MH---LFHVECVDQWLSSNK--RCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C--~h---~fh~~Ci~~~~~~~~--~CP~Cr~~~~~~   72 (81)
                      ..+..|-||.+.-..          ...||  ..   ..|.+|+++|+..++  .|+.|+......
T Consensus         6 ~~~~~CRIC~~~~~~----------~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV----------VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC----------ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            446789999876321          12354  33   469999999996544  599999887654

>PHA02862 5L protein; Provisional

Probab=96.62  E-value=0.0025  Score=37.40  Aligned_cols=47  Identities=21%  Similarity=0.645  Sum_probs=32.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCC-----CcccHhhHHHHHhCC--CCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCM-----HLFHVECVDQWLSSN--KRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-----h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~~   72 (81)
                      +..|-||.+.-+.          ..-||.     ...|..|+++|+..+  ..|+.|+.+....
T Consensus         2 ~diCWIC~~~~~e----------~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          2 SDICWICNDVCDE----------RNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CCEEEEecCcCCC----------CcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            3568899876322          124443     358999999999654  3599999887543

>KOG4692|consensus

Probab=96.62  E-value=0.0018  Score=43.14  Aligned_cols=49  Identities=31%  Similarity=0.610  Sum_probs=40.0

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      +++..|+||...         ....+..||+|.-|..||.+.+.+.+.|=.|+..+..
T Consensus       420 sEd~lCpICyA~---------pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAG---------PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecc---------cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            557789999653         2335667899999999999999999999999987764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.60  E-value=0.0018  Score=43.10  Aligned_cols=49  Identities=31%  Similarity=0.635  Sum_probs=38.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH--hCCCCCCCCccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL--SSNKRCPICRVDIETH   72 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~--~~~~~CP~Cr~~~~~~   72 (81)
                      +...|.||.+.+.-         ..++||+|..|-.|..+..  ...+.|++||..+...
T Consensus        60 en~~C~ICA~~~TY---------s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          60 ENMNCQICAGSTTY---------SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             ccceeEEecCCceE---------EEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence            34569999887654         5688999999988987663  5677899999987654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.52  E-value=0.0021  Score=40.97  Aligned_cols=53  Identities=17%  Similarity=0.480  Sum_probs=39.6

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .....|||....|...     ...+...+|||+|-..++.... ....||+|..++...
T Consensus       111 ~~~~~CPvt~~~~~~~-----~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGK-----HKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCc-----eeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence            4456799998888431     2335567899999999999874 356799999998744

>KOG4185|consensus

Probab=96.51  E-value=0.0031  Score=40.63  Aligned_cols=50  Identities=28%  Similarity=0.606  Sum_probs=39.7

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCcccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDI   69 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~   69 (81)
                      ..|-||-++|+..   .....+..+.|||.++..|+...+.... .||.||...
T Consensus         4 ~~c~~c~~~~s~~---~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSE---DGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCcccccc---CcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            5699999998762   3345677888999999999998876554 599999985

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.48  E-value=0.0023  Score=42.44  Aligned_cols=54  Identities=22%  Similarity=0.543  Sum_probs=37.2

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~   72 (81)
                      .+++.|++|++.++..     ..-..--+||...|.-|.....+. ++.||.||+.....
T Consensus        12 deed~cplcie~mdit-----dknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          12 DEEDYCPLCIEPMDIT-----DKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             cccccCcccccccccc-----cCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            3455699999998752     111223468999999898776543 56799999876543

>KOG1814|consensus

Probab=96.46  E-value=0.0018  Score=43.71  Aligned_cols=44  Identities=23%  Similarity=0.512  Sum_probs=34.3

Q ss_pred             hHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh
Q psy14787          8 CVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS   57 (81)
Q Consensus         8 ~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~   57 (81)
                      .+......-..|.||++....      ......+||+|+||..|+..++.
T Consensus       176 ~~~~F~~slf~C~ICf~e~~G------~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  176 TLEKFVNSLFDCCICFEEQMG------QHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             HHHHHHhhcccceeeehhhcC------cceeeecccchHHHHHHHHHHHH
Confidence            344555667789999987643      35677889999999999999974

>KOG1940|consensus

Probab=96.45  E-value=0.0026  Score=41.00  Aligned_cols=46  Identities=28%  Similarity=0.709  Sum_probs=36.9

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRV   67 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~   67 (81)
                      ..||||.+.+...     ...+..++|||..|..|+......+-.||+|..
T Consensus       159 ~ncPic~e~l~~s-----~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLS-----FEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccc-----cccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3489998877542     345677889999999999998877788999987

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.35  E-value=0.0026  Score=30.42  Aligned_cols=40  Identities=33%  Similarity=0.885  Sum_probs=23.2

Q ss_pred             ccccccccccccccCcCCCCcccCC--CC---cccHhhHHHHHhC--CCCCCCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPC--MH---LFHVECVDQWLSS--NKRCPIC   65 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C--~h---~fh~~Ci~~~~~~--~~~CP~C   65 (81)
                      |-||++.-+.      .. +...||  .-   ..|..|+.+|+..  ...|++|
T Consensus         1 CrIC~~~~~~------~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEE------DE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SS------SS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCC------CC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            5577766443      11 344554  33   6899999999963  4458876

>KOG3268|consensus

Probab=96.29  E-value=0.005  Score=37.50  Aligned_cols=35  Identities=29%  Similarity=0.797  Sum_probs=27.4

Q ss_pred             ccCCCCcccHhhHHHHHhC-----C------CCCCCCccccccccc
Q psy14787         40 RLPCMHLFHVECVDQWLSS-----N------KRCPICRVDIETHLN   74 (81)
Q Consensus        40 ~~~C~h~fh~~Ci~~~~~~-----~------~~CP~Cr~~~~~~~~   74 (81)
                      ...||..||.-|+..|++.     +      +.||.|..++..+.+
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmS  232 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMS  232 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeecc
Confidence            3569999999999999853     1      259999998876544

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.23  E-value=0.0035  Score=41.02  Aligned_cols=42  Identities=33%  Similarity=0.845  Sum_probs=33.5

Q ss_pred             ccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHH-hCCCCCCCCcc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWL-SSNKRCPICRV   67 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~-~~~~~CP~Cr~   67 (81)
                      +.|+.|...+..         +...+ |+|.|+..||...+ .....||.|..
T Consensus       275 LkCplc~~Llrn---------p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRN---------PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhC---------cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            679999888755         44554 89999999999776 56778999965

>KOG3039|consensus

Probab=96.19  E-value=0.0072  Score=38.53  Aligned_cols=54  Identities=19%  Similarity=0.347  Sum_probs=42.7

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +....|++|.+.+.+.     ....+.-+|||+|...|...+......||+|..++...
T Consensus       219 s~ryiCpvtrd~LtNt-----~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNT-----TPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             ccceecccchhhhcCc-----cceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            3467799999998762     22234457999999999999998888999998887654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.12  E-value=0.0031  Score=33.86  Aligned_cols=27  Identities=41%  Similarity=1.070  Sum_probs=22.9

Q ss_pred             CcccchhhHHhhhcC---Cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS---NKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~---~~~C~iC~~~~~   27 (81)
                      .|.||..||.+|+..   ...||+|+..++
T Consensus        53 ~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   53 SHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             ccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            389999999999975   468999998765

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.11  E-value=0.0037  Score=30.87  Aligned_cols=34  Identities=29%  Similarity=0.556  Sum_probs=25.8

Q ss_pred             CCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         37 PTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        37 ~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ....++|+|..+..|..-+  +-+.||.|.+++...
T Consensus        19 ~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen   19 KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             ccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence            3568899999999887543  445699999887643

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.08  E-value=0.0045  Score=35.90  Aligned_cols=41  Identities=20%  Similarity=0.490  Sum_probs=29.0

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCC------CcccHhhHHHHHhC
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCM------HLFHVECVDQWLSS   58 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~------h~fh~~Ci~~~~~~   58 (81)
                      |-....+|.||.+.+..      ..+++.++|+      +.||..|+.+|...
T Consensus        22 w~~~~~EC~IC~~~I~~------~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   22 WPRCTVECQICFDRIDN------NDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             ccccCeeehhhhhhhhc------CCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            33446789999998865      3445555554      56999999999533

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA02929 N1R/p28-like protein; Provisional

Probab=96.05  E-value=0.0038  Score=39.51  Aligned_cols=27  Identities=37%  Similarity=1.096  Sum_probs=24.5

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+.+|+.+|+.....||+|+..+..
T Consensus       202 H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        202 HVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            899999999999999999999987753

>PHA03096 p28-like protein; Provisional

Probab=96.04  E-value=0.0046  Score=40.09  Aligned_cols=41  Identities=22%  Similarity=0.392  Sum_probs=27.9

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS   58 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~   58 (81)
                      ..|.||++...... .....-.....|.|.|+..|+..|...
T Consensus       179 k~c~ic~e~~~~k~-~~~~~fgil~~c~h~fc~~ci~~wr~~  219 (284)
T PHA03096        179 KICGICLENIKAKY-IIKKYYGILSEIKHEFNIFCIKIWMTE  219 (284)
T ss_pred             hhcccchhhhhhhc-cccccccccccCCcHHHHHHHHHHHHh
Confidence            67999999765421 111222234459999999999999754

>KOG2817|consensus

Probab=96.03  E-value=0.0073  Score=40.56  Aligned_cols=54  Identities=20%  Similarity=0.447  Sum_probs=39.5

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC---CCCCCcccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICRVDIETHL   73 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~---~CP~Cr~~~~~~~   73 (81)
                      -.-..|||=.+.-..      ..+|+.+.|||+...+.+.+...++.   .||.|-.......
T Consensus       332 HSvF~CPVlKeqtsd------eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~  388 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSD------ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASD  388 (394)
T ss_pred             cceeecccchhhccC------CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHh
Confidence            344568877665544      45689999999999999999876654   5999966544333

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=96.02  E-value=0.0063  Score=35.27  Aligned_cols=51  Identities=18%  Similarity=0.453  Sum_probs=35.5

Q ss_pred             CccccccccccccccccCcCCCCcccC---CCCcccHhhHHHHHhCC---CCCCCCccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLP---CMHLFHVECVDQWLSSN---KRCPICRVDIETHLN   74 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~---C~h~fh~~Ci~~~~~~~---~~CP~Cr~~~~~~~~   74 (81)
                      -.+|.||.+...+        .-..-|   ||-..+..|-...++..   ..||+|++.+.....
T Consensus        80 lYeCnIC~etS~e--------e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~  136 (140)
T PF05290_consen   80 LYECNICKETSAE--------ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS  136 (140)
T ss_pred             ceeccCcccccch--------hhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence            3579999987543        111112   99999999887766543   469999998876544

>KOG0826|consensus

Probab=96.01  E-value=0.0032  Score=41.42  Aligned_cols=59  Identities=17%  Similarity=0.358  Sum_probs=41.3

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccccccCCC
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQP   80 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~   80 (81)
                      .+...|++|.....+        +.+..--|-+||..|+..+..+.+.||+=..+.....-..++++
T Consensus       298 ~~~~~CpvClk~r~N--------ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~~  356 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQN--------PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLFNK  356 (357)
T ss_pred             CccccChhHHhccCC--------CceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHhcC
Confidence            345679999887644        12333469999999999999999999997666554444444443

>KOG2114|consensus

Probab=95.79  E-value=0.0042  Score=45.23  Aligned_cols=43  Identities=23%  Similarity=0.797  Sum_probs=32.8

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      ..|..|...++.        +.+...|||.||.+|+.   .....||.|+....
T Consensus       841 skCs~C~~~Ldl--------P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  841 SKCSACEGTLDL--------PFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR  883 (933)
T ss_pred             eeecccCCcccc--------ceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence            479999888754        24556799999999998   34567999987443

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.62  E-value=0.0055  Score=29.37  Aligned_cols=33  Identities=33%  Similarity=0.797  Sum_probs=22.7

Q ss_pred             ccCCC-CcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         40 RLPCM-HLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        40 ~~~C~-h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ...|. |-.+..|+...+.++..||+|..+++..
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            34464 8899999999999999999999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=95.51  E-value=0.0093  Score=27.02  Aligned_cols=25  Identities=44%  Similarity=1.176  Sum_probs=20.9

Q ss_pred             CcccchhhHHhhhcC-Cccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-NKRCPICRVD   25 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~C~iC~~~   25 (81)
                      .|.|+..++.+|+.. ...|++|...
T Consensus        19 ~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162          19 GHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            389999999999986 6779999764

>KOG4275|consensus

Probab=95.46  E-value=0.0018  Score=42.06  Aligned_cols=42  Identities=31%  Similarity=0.640  Sum_probs=30.8

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      +..|.||++.-         ..-..|.|||. -|..|-.+.    +.||+||+.+.
T Consensus       300 ~~LC~ICmDaP---------~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAP---------RDCVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCC---------cceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            56799998873         33678899996 566676543    47999998764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.39  E-value=0.0064  Score=29.30  Aligned_cols=23  Identities=39%  Similarity=1.204  Sum_probs=18.7

Q ss_pred             CcccchhhHHhhhcC--Cccccccc
Q psy14787          1 MHLFHVECVDQWLSS--NKRCPICR   23 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~~C~iC~   23 (81)
                      |+++|..|+.+|+..  ...|+||.
T Consensus        25 ~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744       25 LKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             hhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            578999999999954  44799884

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0801|consensus

Probab=95.36  E-value=0.0046  Score=37.08  Aligned_cols=28  Identities=36%  Similarity=0.795  Sum_probs=24.5

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccH
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHV   49 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~   49 (81)
                      ..+|.||+|+++.      ++...++||-.+||.
T Consensus       177 kGECvICLEdL~~------GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  177 KGECVICLEDLEA------GDTIARLPCLCIYHK  204 (205)
T ss_pred             CCcEEEEhhhccC------CCceeccceEEEeec
Confidence            4579999999988      888899999999885

>KOG1571|consensus

Probab=95.20  E-value=0.01  Score=39.38  Aligned_cols=47  Identities=23%  Similarity=0.534  Sum_probs=32.5

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .....|.||.+....         ...++|||.-+  |..-. +.-..||+||..+...
T Consensus       303 ~~p~lcVVcl~e~~~---------~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~~  349 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---------AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRLV  349 (355)
T ss_pred             CCCCceEEecCCccc---------eeeecCCcEEE--chHHH-hhCCCCchhHHHHHHH
Confidence            345679999887544         67889999865  44332 2234599999987654

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=95.11  E-value=0.015  Score=38.90  Aligned_cols=28  Identities=32%  Similarity=1.042  Sum_probs=22.6

Q ss_pred             CCCcccHhhHHHHHhCCC-------------CCCCCccccc
Q psy14787         43 CMHLFHVECVDQWLSSNK-------------RCPICRVDIE   70 (81)
Q Consensus        43 C~h~fh~~Ci~~~~~~~~-------------~CP~Cr~~~~   70 (81)
                      |....|.+|+.+|+...+             .||.||+.+-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            778899999999995432             4999999764

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3800|consensus

Probab=94.77  E-value=0.027  Score=36.54  Aligned_cols=52  Identities=27%  Similarity=0.476  Sum_probs=35.3

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCcccccccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETHL   73 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~~   73 (81)
                      .|++|....--+    +....+.-+|+|..|..|..+.+..+. .||.|...+....
T Consensus         2 ~Cp~CKt~~Y~n----p~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n   54 (300)
T KOG3800|consen    2 ACPKCKTDRYLN----PDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN   54 (300)
T ss_pred             CCcccccceecC----ccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence            488887643220    011122337999999999999997665 6999988776543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=94.72  E-value=0.019  Score=26.00  Aligned_cols=21  Identities=43%  Similarity=1.241  Sum_probs=18.2

Q ss_pred             cccchhhHHhhhcCCcccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPIC   22 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC   22 (81)
                      |.|..+++.+++.....||+|
T Consensus        19 H~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen   19 HSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             EEEEHHHHHHHHHCTSB-TTT
T ss_pred             CchhHHHHHHHHHCcCCCcCC
Confidence            889999999999888889887

>KOG4739|consensus

Probab=94.60  E-value=0.012  Score=37.11  Aligned_cols=36  Identities=28%  Similarity=0.672  Sum_probs=26.1

Q ss_pred             CCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         36 QPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        36 ~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      .....+.|+|+||..|...-  ....||+|+..+....
T Consensus        16 ~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~   51 (233)
T KOG4739|consen   16 DPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQ   51 (233)
T ss_pred             CceeeeechhhhhhhhcccC--Cccccccccceeeeee
Confidence            33456779999999997642  2337999999876443

>KOG4628|consensus

Probab=94.54  E-value=0.015  Score=38.74  Aligned_cols=27  Identities=52%  Similarity=1.309  Sum_probs=23.3

Q ss_pred             cccchhhHHhhhcCCc-ccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNK-RCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~-~C~iC~~~~~~   28 (81)
                      |.||..||..|+.+.. .||+|..+...
T Consensus       252 H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  252 HKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             CchhhccchhhHhhcCccCCCCCCcCCC
Confidence            8999999999998874 59999987644

>KOG2932|consensus

Probab=94.53  E-value=0.018  Score=37.93  Aligned_cols=31  Identities=35%  Similarity=0.934  Sum_probs=23.7

Q ss_pred             CcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         38 TWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        38 ~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      -+..+|.|+||.+|...  ...+.||.|...+.
T Consensus       104 GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen  104 GRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             ecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            35678999999999753  44668999976654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=94.52  E-value=0.03  Score=26.76  Aligned_cols=26  Identities=54%  Similarity=1.124  Sum_probs=22.4

Q ss_pred             cc-cchhhHHhhhcCCccccccccccc
Q psy14787          2 HL-FHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         2 ~~-~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      |. |-.+++.+++.....||+|+..++
T Consensus        22 H~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen   22 HLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             EEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             ChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            77 889999999999999999998764

...

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=94.44  E-value=0.022  Score=30.27  Aligned_cols=26  Identities=35%  Similarity=0.829  Sum_probs=23.7

Q ss_pred             cccchhhHHhhhcCCccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      |.||-.||.+|+.....||.+...+.
T Consensus        56 HaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          56 HAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             hHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            89999999999999999999987764

>KOG2930|consensus

Probab=94.40  E-value=0.019  Score=31.97  Aligned_cols=25  Identities=32%  Similarity=0.959  Sum_probs=23.0

Q ss_pred             cccchhhHHhhhcCCcccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDI   26 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~   26 (81)
                      |+||-.||.+|+.....||++..+.
T Consensus        83 HaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   83 HAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             hHHHHHHHHHHHhhcCcCCCcCcce
Confidence            8999999999999999999997764

>KOG2034|consensus

Probab=94.35  E-value=0.019  Score=42.09  Aligned_cols=36  Identities=25%  Similarity=0.687  Sum_probs=28.3

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL   56 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~   56 (81)
                      ..+..|.+|...+..       .+-...+|||.||..|+.+-.
T Consensus       815 ep~d~C~~C~~~ll~-------~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLI-------KPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhc-------CcceeeeccchHHHHHHHHHH
Confidence            457789999988754       335677899999999998764

>KOG4367|consensus

Probab=94.35  E-value=0.022  Score=39.23  Aligned_cols=35  Identities=26%  Similarity=0.588  Sum_probs=29.9

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS   57 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~   57 (81)
                      ++++.|+||..-+..         ++.++|+|.+|..|...-+.
T Consensus         2 eeelkc~vc~~f~~e---------piil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYRE---------PIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccC---------ceEeecccHHHHHHHHhhcc
Confidence            567889999998876         88999999999999887653

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=0.027  Score=38.01  Aligned_cols=25  Identities=40%  Similarity=1.244  Sum_probs=23.5

Q ss_pred             cccchhhHHhhhcCCcccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDI   26 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~   26 (81)
                      |.+|-+|+..|++.+..||||+..+
T Consensus       320 HilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         320 HILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             ceeeHHHHHHHHHhccCCCcccCcc
Confidence            8899999999999999999999874

>KOG4362|consensus

Probab=94.08  E-value=0.015  Score=41.60  Aligned_cols=60  Identities=30%  Similarity=0.620  Sum_probs=46.8

Q ss_pred             ccchhhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC---CCCCCcccccc
Q psy14787          3 LFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICRVDIET   71 (81)
Q Consensus         3 ~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~---~CP~Cr~~~~~   71 (81)
                      .+.+.+|...+.-...|+||...+..         +..+.|.|.|+..|+..-+...+   .||+|+..+..
T Consensus         8 ~~~~~~vi~~~~k~lEc~ic~~~~~~---------p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK   70 (684)
T KOG4362|consen    8 VREVAQVINAMQKILECPICLEHVKE---------PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK   70 (684)
T ss_pred             HHHHHhHHHHHhhhccCCceeEEeec---------cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence            35566777888889999999998766         56788999999999987765443   59999866543

>smart00504 Ubox Modified RING finger domain

Probab=93.98  E-value=0.037  Score=27.38  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=23.5

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+.+++.+|+.....||+|.+.+..
T Consensus        21 ~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504       21 QTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             CEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            789999999999888899999887743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0309|consensus

Probab=93.73  E-value=0.051  Score=39.71  Aligned_cols=39  Identities=26%  Similarity=0.761  Sum_probs=29.4

Q ss_pred             ccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCC
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPI   64 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~   64 (81)
                      |.||.-.+.       +.......|+|+.|..|...|+..+-.||.
T Consensus      1031 C~~C~l~V~-------gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-------GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeEeeEee-------ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence            666654432       233456679999999999999999988885

>KOG1812|consensus

Probab=93.42  E-value=0.035  Score=37.44  Aligned_cols=55  Identities=27%  Similarity=0.524  Sum_probs=33.7

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC------CCCCC--Ccccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN------KRCPI--CRVDIETHLNK   75 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~------~~CP~--Cr~~~~~~~~~   75 (81)
                      ...|.||.......     ........|+|.|+..|+.+.+...      ..||.  |...+......
T Consensus       146 ~~~C~iC~~e~~~~-----~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~  208 (384)
T KOG1812|consen  146 KEECGICFVEDPEA-----EDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCR  208 (384)
T ss_pred             cccCccCccccccH-----hhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHh
Confidence            45799999443220     1112245699999999999998643      24764  55555544333

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.39  E-value=0.076  Score=31.71  Aligned_cols=12  Identities=33%  Similarity=0.814  Sum_probs=9.3

Q ss_pred             CCcccccccccc
Q psy14787         15 SNKRCPICRVDI   26 (81)
Q Consensus        15 ~~~~C~iC~~~~   26 (81)
                      ++..|+|||+.-
T Consensus         1 ed~~CpICme~P   12 (162)
T PF07800_consen    1 EDVTCPICMEHP   12 (162)
T ss_pred             CCccCceeccCC
Confidence            456899999864

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4718|consensus

Probab=93.07  E-value=0.073  Score=33.28  Aligned_cols=49  Identities=20%  Similarity=0.485  Sum_probs=37.1

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      ..|.+|...+-.        ....-.|+-.+|..|+..++++...||.|.--|+...
T Consensus       182 k~Cn~Ch~LvIq--------g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h~I  230 (235)
T KOG4718|consen  182 KNCNLCHCLVIQ--------GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTHPI  230 (235)
T ss_pred             HHHhHhHHHhhe--------eeccCcccchhhhHHHHHHhcccCcCCchhcccCccc
Confidence            369999886532        2345567778999999999999889999976665443

>KOG1493|consensus

Probab=92.92  E-value=0.046  Score=28.84  Aligned_cols=26  Identities=42%  Similarity=1.140  Sum_probs=21.6

Q ss_pred             cccchhhHHhhhc---CCccccccccccc
Q psy14787          2 HLFHVECVDQWLS---SNKRCPICRVDIE   27 (81)
Q Consensus         2 ~~~~~~~~~~~~~---~~~~C~iC~~~~~   27 (81)
                      |.||..||.+|+.   .+..||.|+..+.
T Consensus        53 h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   53 HAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHHHHHHHhcCccccccCCcchheeE
Confidence            8899999999993   4567999988764

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=92.81  E-value=0.032  Score=35.56  Aligned_cols=54  Identities=28%  Similarity=0.597  Sum_probs=36.4

Q ss_pred             cCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCCC-CCC--CCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSNK-RCP--ICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~~-~CP--~Cr~~~~~   71 (81)
                      ..+..||+|..+---+    +......-| |-|..|.+|+.+-+.++. .||  .|...+..
T Consensus         8 ~~d~~CPvCksDrYLn----Pdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK   65 (314)
T COG5220           8 MEDRRCPVCKSDRYLN----PDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK   65 (314)
T ss_pred             hhcccCCccccccccC----CCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence            3466899998754220    011111223 999999999999998877 499  78776653

>KOG0802|consensus

Probab=92.70  E-value=0.045  Score=38.36  Aligned_cols=27  Identities=33%  Similarity=0.973  Sum_probs=24.3

Q ss_pred             CcccchhhHHhhhcCCccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      .|.||..|+.+|++.+..||+|+..+.
T Consensus       315 ~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  315 GHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             ccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            599999999999999999999998543

>KOG3002|consensus

Probab=92.45  E-value=0.087  Score=34.51  Aligned_cols=43  Identities=28%  Similarity=0.705  Sum_probs=31.3

Q ss_pred             CCccccccccccccccccCcCCCCcccCC--CCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPC--MHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C--~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      +-.+||+|.+.+.+         + ...|  ||..|..|-.   +....||.|+.++.
T Consensus        47 ~lleCPvC~~~l~~---------P-i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSP---------P-IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             hhccCchhhccCcc---------c-ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence            34679999998865         2 3345  6777777764   34677999999887

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.25  E-value=0.2  Score=37.10  Aligned_cols=53  Identities=25%  Similarity=0.638  Sum_probs=37.1

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCc-----ccHhhHHHHHhCCC--CCCCCcccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-----FHVECVDQWLSSNK--RCPICRVDIETHL   73 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-----fh~~Ci~~~~~~~~--~CP~Cr~~~~~~~   73 (81)
                      .++..|-||+..=.       .+.+..-||+..     .|.+|+.+|+..++  .|-+|..++..+.
T Consensus        10 ~d~~~CRICr~e~~-------~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183          10 EDKRSCRICRTEDI-------RDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             ccchhceeecCCCC-------CCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            45577999987532       233445566543     89999999997654  5999998887553

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.71  E-value=0.11  Score=34.23  Aligned_cols=26  Identities=54%  Similarity=1.318  Sum_probs=22.3

Q ss_pred             cccchhhHHhhhcC-Cccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIE   27 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~   27 (81)
                      |-||+.|+++|+.+ ...||+|...+.
T Consensus       346 H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         346 HRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             ceechhHHHHHHhhhcccCCccCCCCC
Confidence            88999999999984 568999987763

>KOG1001|consensus

Probab=91.56  E-value=0.077  Score=38.27  Aligned_cols=46  Identities=28%  Similarity=0.714  Sum_probs=35.6

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--CCCCCCccccccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICRVDIETH   72 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~~   72 (81)
                      ..|.+|.+ .+.         ....+|+|.|+..|+...+...  ..||.|+..+...
T Consensus       455 ~~c~ic~~-~~~---------~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD-LDS---------FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc-ccc---------ceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            78999988 333         6677899999999998887543  3599999877543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.02  E-value=0.19  Score=24.74  Aligned_cols=34  Identities=18%  Similarity=0.482  Sum_probs=25.5

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ   54 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~   54 (81)
                      ...|++|.+.|...     .+.++...|+-.+|+.|...
T Consensus         5 ~~~C~~Cg~~~~~~-----dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDG-----DDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCC-----CCEEECCCCCCcccHHHHhh
Confidence            45799999998641     34455666999999999764

>KOG3053|consensus

Probab=90.41  E-value=0.16  Score=32.69  Aligned_cols=52  Identities=25%  Similarity=0.730  Sum_probs=32.3

Q ss_pred             CccccccccccccccccCcCCCCcccCC-----CCcccHhhHHHHHhCCC--------CCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPC-----MHLFHVECVDQWLSSNK--------RCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C-----~h~fh~~Ci~~~~~~~~--------~CP~Cr~~~~~~   72 (81)
                      +..|=||..--+++     +.....-||     .+..|..|+.+|+..+.        .||-|++.....
T Consensus        20 eR~CWiCF~TdeDn-----~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv   84 (293)
T KOG3053|consen   20 ERCCWICFATDEDN-----RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV   84 (293)
T ss_pred             ceeEEEEeccCccc-----chhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence            45688997643331     111123344     35699999999985321        499998876533

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=90.11  E-value=0.26  Score=25.44  Aligned_cols=27  Identities=19%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.|++.+|.+|+.. ...||++...+..
T Consensus        24 ~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen   24 HTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             EEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             CEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            68999999999998 8899999777654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG1100|consensus

Probab=89.96  E-value=0.18  Score=31.37  Aligned_cols=40  Identities=33%  Similarity=0.690  Sum_probs=27.7

Q ss_pred             ccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         19 CPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        19 C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      |-.|.+.         ...+..+||.|. +|..|-..    -..||+|+.....
T Consensus       161 Cr~C~~~---------~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---------EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---------CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            7777655         334778899986 77777543    3459999876543

>KOG0317|consensus

Probab=89.85  E-value=0.19  Score=32.73  Aligned_cols=27  Identities=33%  Similarity=0.984  Sum_probs=25.2

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|.-.||-+|..+...||.|++.+.+
T Consensus       259 HiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  259 HIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             chHHHHHHHHHHccccCCCcccccCCC
Confidence            889999999999999999999998865

>KOG0827|consensus

Probab=89.48  E-value=0.014  Score=39.45  Aligned_cols=51  Identities=20%  Similarity=0.578  Sum_probs=38.7

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ..|.||.+.+....     +....+.|||.+|..++..|+.....||.|+..+...
T Consensus       197 ~sl~I~~~slK~~y-----~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  197 GSLSICFESLKQNY-----DKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN  247 (465)
T ss_pred             hhhHhhHHHHHHHH-----HHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence            45888888776521     1123456999999999999998888899999887654

>PHA02926 zinc finger-like protein; Provisional

Probab=88.92  E-value=0.22  Score=31.48  Aligned_cols=27  Identities=33%  Similarity=1.085  Sum_probs=22.1

Q ss_pred             cccchhhHHhhhcCC------cccccccccccc
Q psy14787          2 HLFHVECVDQWLSSN------KRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~------~~C~iC~~~~~~   28 (81)
                      |.|...|+.+|....      ..||+|+..+..
T Consensus       199 HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        199 HIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             chHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            899999999999642      349999988753

>KOG0298|consensus

Probab=88.62  E-value=0.22  Score=38.30  Aligned_cols=47  Identities=30%  Similarity=0.576  Sum_probs=37.6

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD   68 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~   68 (81)
                      .+...|.||.+.+..        ......|||-++..|...|+..+..||.|+..
T Consensus      1151 ~~~~~c~ic~dil~~--------~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRN--------QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred             hcccchHHHHHHHHh--------cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence            445579999988763        13355699999999999999999999999754

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=88.37  E-value=0.45  Score=29.39  Aligned_cols=46  Identities=26%  Similarity=0.582  Sum_probs=26.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRV   67 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~   67 (81)
                      +..|-+|.+. +...+=..........|+..||..|..     +..||.|..
T Consensus       152 GfiCe~C~~~-~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R  197 (202)
T PF13901_consen  152 GFICEICNSD-DIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR  197 (202)
T ss_pred             CCCCccCCCC-CCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence            4557777643 111111111223344699999999976     266999954

>KOG3899|consensus

Probab=88.30  E-value=0.28  Score=32.27  Aligned_cols=28  Identities=29%  Similarity=0.742  Sum_probs=21.8

Q ss_pred             CCCcccHhhHHHHHhCC-------------CCCCCCccccc
Q psy14787         43 CMHLFHVECVDQWLSSN-------------KRCPICRVDIE   70 (81)
Q Consensus        43 C~h~fh~~Ci~~~~~~~-------------~~CP~Cr~~~~   70 (81)
                      |....|.+|+.+|+...             -+||.||+.+-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            67788999999998432             25999998764

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.84  E-value=0.5  Score=22.71  Aligned_cols=42  Identities=31%  Similarity=0.692  Sum_probs=15.9

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH---h--CCCCCCCCcc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL---S--SNKRCPICRV   67 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~---~--~~~~CP~Cr~   67 (81)
                      +.|+|-...+..        .++...|.|.-+.+- ..|+   .  ....||+|.+
T Consensus         3 L~CPls~~~i~~--------P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~   49 (50)
T PF02891_consen    3 LRCPLSFQRIRI--------PVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK   49 (50)
T ss_dssp             SB-TTTSSB-SS--------EEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred             eeCCCCCCEEEe--------CccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence            457777766644        123345998744332 2233   2  2236999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=85.42  E-value=2.6  Score=22.37  Aligned_cols=55  Identities=22%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~   72 (81)
                      ...|.||.+.+....++..  .+...-|+--.+..|..-=.+. .+.||.|+....-.
T Consensus         9 ~qiCqiCGD~VGl~~~Ge~--FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~   64 (80)
T PF14569_consen    9 GQICQICGDDVGLTENGEV--FVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH   64 (80)
T ss_dssp             S-B-SSS--B--B-SSSSB----S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred             CcccccccCccccCCCCCE--EEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence            4579999998765332221  1223347777888888644433 45699999877543

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=84.93  E-value=0.9  Score=30.29  Aligned_cols=33  Identities=24%  Similarity=0.520  Sum_probs=25.7

Q ss_pred             CCCCcccCCCCcccHhhHHHHHhCCC---CCCCCcc
Q psy14787         35 LQPTWRLPCMHLFHVECVDQWLSSNK---RCPICRV   67 (81)
Q Consensus        35 ~~~~~~~~C~h~fh~~Ci~~~~~~~~---~CP~Cr~   67 (81)
                      ..+|+.+.|||+.-...+.+..+++.   .||.|-.
T Consensus       349 ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~  384 (396)
T COG5109         349 ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE  384 (396)
T ss_pred             cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence            34578889999999999988766553   5999944

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=84.87  E-value=0.59  Score=28.86  Aligned_cols=28  Identities=32%  Similarity=0.967  Sum_probs=22.3

Q ss_pred             CcccchhhHHhhhc----------------CCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLS----------------SNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~----------------~~~~C~iC~~~~~~   28 (81)
                      -|.|...|+.+|+.                ....||+|...+..
T Consensus        37 GH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         37 GHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            38999999999873                23579999998854

>KOG0825|consensus

Probab=83.98  E-value=0.49  Score=35.10  Aligned_cols=28  Identities=32%  Similarity=0.763  Sum_probs=25.5

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|||+..||..|..-...|+||+..|..
T Consensus       145 ~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  145 AHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             ccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            4999999999999999999999998854

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=83.90  E-value=0.68  Score=30.55  Aligned_cols=27  Identities=33%  Similarity=0.740  Sum_probs=24.7

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|..-||..++..+..||+|++++..
T Consensus        45 HtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          45 HTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             cchhHHHHHHHhcCCCCCccccccHHh
Confidence            889999999999999999999988744

>KOG0828|consensus

Probab=83.40  E-value=0.58  Score=32.92  Aligned_cols=25  Identities=40%  Similarity=1.144  Sum_probs=21.7

Q ss_pred             cccchhhHHhhhc-CCcccccccccc
Q psy14787          2 HLFHVECVDQWLS-SNKRCPICRVDI   26 (81)
Q Consensus         2 ~~~~~~~~~~~~~-~~~~C~iC~~~~   26 (81)
                      |.||+.|+.+|+. -...|+.|+..+
T Consensus       608 HifH~~CL~~WMd~ykl~CPvCR~pL  633 (636)
T KOG0828|consen  608 HIFHRQCLLQWMDTYKLICPVCRCPL  633 (636)
T ss_pred             HHHHHHHHHHHHhhhcccCCccCCCC
Confidence            7899999999998 456899998765

>KOG3113|consensus

Probab=81.33  E-value=1.5  Score=28.40  Aligned_cols=33  Identities=12%  Similarity=0.226  Sum_probs=25.2

Q ss_pred             cccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         39 WRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        39 ~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      ...+|||+|-..-+.+..  ...|++|...+....
T Consensus       129 ~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d  161 (293)
T KOG3113|consen  129 ALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD  161 (293)
T ss_pred             EEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence            345799999998887753  567999998876543

>KOG1609|consensus

Probab=80.29  E-value=1.7  Score=27.98  Aligned_cols=52  Identities=27%  Similarity=0.576  Sum_probs=33.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCC-----cccHhhHHHHHhC--CCCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMH-----LFHVECVDQWLSS--NKRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h-----~fh~~Ci~~~~~~--~~~CP~Cr~~~~~~   72 (81)
                      +..|-||.........     .....||..     ..|..|+..|+..  ...|..|.......
T Consensus        78 ~~~cRIc~~~~~~~~~-----~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNG-----LLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccc-----cccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            3569999886643110     033445432     3799999999974  44699997765433

>KOG0269|consensus

Probab=80.05  E-value=1.7  Score=32.04  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             cCCCCcccHhhHHHHHhCCCCCCC
Q psy14787         41 LPCMHLFHVECVDQWLSSNKRCPI   64 (81)
Q Consensus        41 ~~C~h~fh~~Ci~~~~~~~~~CP~   64 (81)
                      -.|+|.-|..++..|+.....||.
T Consensus       797 ~~C~H~gH~sh~~sw~~~~s~ca~  820 (839)
T KOG0269|consen  797 QVCGHGGHDSHLKSWFFKASPCAK  820 (839)
T ss_pred             ccccccccHHHHHHHHhcCCCCcc
Confidence            359999999999999988777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		1e-10
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		6e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-05
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		5e-05
1chc_A	68	Structure Of The C3hc4 Domain By 1h-Nuclear Magneti		6e-05

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 40 RLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL 73
          RLPCMHLFH  CVDQWL +NK+CPICRVDIE  L
Sbjct: 32 RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
          C +C  D E+   + LL+    LPC H FH +CVD+WL +N+ CPICR D
Sbjct: 26 CVVCMCDFES---RQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRAD 69

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 9  VDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVD 68
           ++ + S   CP+C+ D        L +   +LPC HLFH  C+  WL  +  CP+CR  
Sbjct: 8  TEEHVGSGLECPVCKEDYA------LGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 69 I 69
          +
Sbjct: 62 L 62

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          +     C +C  ++E     D  +  +   C H FH ECVD WL S+  CP+CR+ +
Sbjct: 2  MDDGVECAVCLAELE-----DGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic Resonance Spectroscopy; A New Structural Class Of Zinc- Finger Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
          +RCPIC  D   +        +  LPC+H F   C+ +W+  N  CP+C+V +E+
Sbjct: 6  ERCPICLEDPSNY--------SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-14
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	9e-11
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	6e-14
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-09
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	3e-13
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-08
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-12
2ect_A	78	Ring finger protein 126; metal binding protein, st	4e-08
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-12
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-07
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	5e-12
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-08
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-11
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	5e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-11
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-06
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-10
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-08
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-09
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-09
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-08
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	6e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-04
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	5e-08
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-04
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	6e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-04
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-07
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-04
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	9e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	4e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-05
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-04
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	4e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	4e-04

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 60.8 bits (148), Expect = 2e-14
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 6/62 (9%)

Query: 15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN 74
          + ++C IC   +E     + ++   RLPCMHLFH  CVDQWL +NK+CPICRVDIE  L 
Sbjct: 13 TEEKCTICLSILEE---GEDVR---RLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66

Query: 75 KD 76
           +
Sbjct: 67 SE 68

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 51.2 bits (123), Expect = 9e-11
 Identities = 23/33 (69%), Positives = 26/33 (78%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIETHLNKD 33
          MHLFH  CVDQWL +NK+CPICRVDIE  L  +
Sbjct: 36 MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 59.3 bits (144), Expect = 6e-14
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 6/53 (11%)

Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
          C +C  D E   ++ LL+    LPC H FH +CVD+WL +N+ CPICR D   
Sbjct: 26 CVVCMCDFE---SRQLLR---VLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 48.5 bits (116), Expect = 1e-09
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDIET 28
          H FH +CVD+WL +N+ CPICR D   
Sbjct: 46 HEFHAKCVDKWLKANRTCPICRADSGP 72

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 57.9 bits (140), Expect = 3e-13
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          L+ ++ C +C  D +    +D L      PC H FH +C+ +WL   K CP+C + +
Sbjct: 12 LNLHELCAVCLEDFK---PRDELG---ICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 45.9 bits (109), Expect = 1e-08
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDI 26
           H FH +C+ +WL   K CP+C + +
Sbjct: 37 KHAFHRKCLIKWLEVRKVCPLCNMPV 62

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 55.9 bits (135), Expect = 2e-12
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
          + S   CP+C+ D    L + + Q    LPC HLFH  C+  WL  +  CP+CR  +   
Sbjct: 12 VGSGLECPVCKEDYA--LGESVRQ----LPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 44.7 bits (106), Expect = 4e-08
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIETH 29
           HLFH  C+  WL  +  CP+CR  +   
Sbjct: 37 NHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 55.3 bits (134), Expect = 2e-12
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          S +  CPIC  DI T            LPC HL H  C ++ L    RCP+C    
Sbjct: 3  SGSSGCPICLEDIHTSR-----VVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 41.5 bits (98), Expect = 4e-07
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDI 26
          HL H  C ++ L    RCP+C    
Sbjct: 29 HLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 54.7 bits (132), Expect = 5e-12
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
          L+  + C IC          D       LPC H F  +C+D+W   ++ CPICR+ + 
Sbjct: 12 LTDEEECCIC---------MDGRADL-ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 44.7 bits (106), Expect = 3e-08
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIE 27
           H F  +C+D+W   ++ CPICR+ + 
Sbjct: 33 AHSFCQKCIDKWSDRHRNCPICRLQMT 59

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 53.5 bits (129), Expect = 2e-11
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICR 66
               CPIC  +       D+      LPC H FH  CV  WL  +  CP+CR
Sbjct: 38 GQEMCCPICCSEYVK---GDVAT---ELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 2  HLFHVECVDQWLSSNKRCPICR 23
          H FH  CV  WL  +  CP+CR
Sbjct: 63 HYFHKPCVSIWLQKSGTCPVCR 84

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 52.8 bits (127), Expect = 2e-11
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
          +  +RCPIC  D            +  LPC+H F   C+ +W+  N  CP+C+V +E+
Sbjct: 3  TVAERCPICLEDPS--------NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIET 28
          +H F   C+ +W+  N  CP+C+V +E+
Sbjct: 25 LHAFCYVCITRWIRQNPTCPLCKVPVES 52

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 49.1 bits (118), Expect = 4e-10
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 40 RLP-CMHLFHVECVDQWLSSNKRCPICRVDI 69
           LP C H FH ECVD WL S+  CP+CR+ +
Sbjct: 23 FLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 45.3 bits (108), Expect = 1e-08
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDI 26
          H FH ECVD WL S+  CP+CR+ +
Sbjct: 29 HGFHAECVDMWLGSHSTCPLCRLTV 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 48.8 bits (116), Expect = 1e-09
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          S    CPIC       +    L  +    C H+F  +C+   L +   CP CR  I
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 38.4 bits (89), Expect = 1e-05
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDI 26
          H+F  +C+   L +   CP CR  I
Sbjct: 42 HVFCSQCLRDSLKNANTCPTCRKKI 66

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 48.0 bits (114), Expect = 2e-09
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 12 WLSSNKRCPICRVDIETH------LNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC 65
          W      C ICRV +          NK          C H FH  C+  W+  N RCP+C
Sbjct: 11 WDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

Query: 66 RVDIE 70
          + D  
Sbjct: 71 QQDWV 75

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIE 27
           H FH  C+  W+  N RCP+C+ D  
Sbjct: 49 NHSFHNCCMSLWVKQNNRCPLCQQDWV 75

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 46.0 bits (109), Expect = 1e-08
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
          S    CPIC       +    L  +    C H+F  +C+   L +   CP CR  I   
Sbjct: 8  SGTVSCPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 36.4 bits (84), Expect = 6e-05
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDIETH 29
          H+F  +C+   L +   CP CR  I   
Sbjct: 37 HVFCSQCLRDSLKNANTCPTCRKKINHK 64

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 45.1 bits (107), Expect = 3e-08
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
          L+    C IC+          L+  T    C+H F   C+ +    + RCP C + + 
Sbjct: 12 LTPYILCSICK--------GYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 34.3 bits (79), Expect = 4e-04
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIE 27
          +H F   C+ +    + RCP C + + 
Sbjct: 35 LHTFCKSCIVRHFYYSNRCPKCNIVVH 61

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 44.0 bits (104), Expect = 5e-08
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          CPIC       +    L  +    C H+F  +C+   L +   CP CR  I
Sbjct: 6  CPICMDGYSEIVQNGRLIVS--TECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 35.5 bits (82), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDI 26
          H+F  +C+   L +   CP CR  I
Sbjct: 30 HVFCSQCLRDSLKNANTCPTCRKKI 54

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 45.2 bits (106), Expect = 6e-08
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 12  WLSSNKRCPICRVDIETHL---------NKDLLQPTWRLPCMHLFHVECVDQWLSSNKRC 62
           W      C ICR  I                         C H FH  C+ +WL + + C
Sbjct: 33  WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 92

Query: 63  PICRVDIE 70
           P+   + E
Sbjct: 93  PLDNREWE 100

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 1   MHLFHVECVDQWLSSNKRCPICRVDIE 27
            H FH  C+ +WL + + CP+   + E
Sbjct: 74  NHAFHFHCISRWLKTRQVCPLDNREWE 100

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 44.1 bits (103), Expect = 2e-07
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 12  WLSSNKRCPICRVDIETHL---------NKDLLQPTWRLPCMHLFHVECVDQWLSSNKRC 62
           W      C ICR  I                         C H FH  C+ +WL + + C
Sbjct: 44  WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 103

Query: 63  PICRVDIE 70
           P+   + E
Sbjct: 104 PLDNREWE 111

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 1   MHLFHVECVDQWLSSNKRCPICRVDIE 27
            H FH  C+ +WL + + CP+   + E
Sbjct: 85  NHAFHFHCISRWLKTRQVCPLDNREWE 111

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 42.9 bits (101), Expect = 2e-07
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 9/58 (15%)

Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNK 75
          RC ICR        +    P     C H F   C  +   +  RC IC        N 
Sbjct: 17 RCFICR--------QAFQNPV-VTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNP 65

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDIETHLNK 32
          H F   C  +   +  RC IC        N 
Sbjct: 35 HYFCESCALEHFRATPRCYICDQPTGGIFNP 65

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 42.1 bits (99), Expect = 4e-07
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 13/68 (19%)

Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
            +   C IC         +  + P   LPC H+F   CV       KRC +CR      
Sbjct: 12 SLTVPECAICL--------QTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCR----QE 58

Query: 73 LNKDLLQP 80
          + +D L  
Sbjct: 59 IPEDFLDS 66

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 34.0 bits (78), Expect = 6e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQP 37
          H+F   CV       KRC +CR      + +D L  
Sbjct: 35 HVFCYLCVKGASWLGKRCALCR----QEIPEDFLDS 66

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 41.3 bits (97), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
          L+ +  C +C            +  T  + C+H F   C+ ++L ++K CPIC V +   
Sbjct: 12 LNPHLMCVLCG--------GYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63

Query: 73 LNKDLLQP 80
               ++ 
Sbjct: 64 RPLLNIRS 71

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 14  SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDIETH 72
           S+ + C IC          +  +     PC HL    C+  W  S  + CP CR +I+  
Sbjct: 330 STFQLCKICA---------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 35.1 bits (80), Expect = 9e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 2   HLFHVECVDQWLSSNKR-CPICRVDIETH 29
           HL    C+  W  S  + CP CR +I+  
Sbjct: 352 HLMCTSCLTSWQESEGQGCPFCRCEIKGT 380

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 40.6 bits (94), Expect = 4e-06
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 14/67 (20%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWR---------LPCMHLFHVECVDQWLSS-----N 59
          +  + C IC   +        +  +             C H FH+ C+     +     +
Sbjct: 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82

Query: 60 KRCPICR 66
           +CP C+
Sbjct: 83 LQCPSCK 89

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 22/93 (23%)

Query: 2   HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWR--------------------- 40
           H+F  +C+   L +   CP CR  I       +   +                       
Sbjct: 34  HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIV 93

Query: 41  -LPCMHLFHVECVDQWLSSNKRCPICRVDIETH 72
              C H+F  +C+   L +   CP CR  I   
Sbjct: 94  STECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 36.4 bits (84), Expect = 6e-05
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL--SSNKRCPICRVDIETHL 73
          K C IC           L+Q      C    H+ CV ++   ++  RCP C       +
Sbjct: 16 KICNICH--------SLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 36.8 bits (85), Expect = 8e-05
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDI 69
          + ++   RC IC         + L        C  L    C+ +WL+  + +CP CR  +
Sbjct: 17 ESIAEVFRCFICM--------EKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68

Query: 70 ETH 72
          +  
Sbjct: 69 QLR 71

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 10  DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
           +  L +  +C IC          +       L C H F   C+++W+     CPICR DI
Sbjct: 58  NDVLENELQCIIC---------SEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108

Query: 70  ET 71
           ++
Sbjct: 109 KS 110

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 36.0 bits (82), Expect = 4e-04
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 12/73 (16%)

Query: 16  NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-----------RCPI 64
             RC IC         +  L       C+   H  C+++W  +             +CP 
Sbjct: 308 ELRCNICF-AYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 65  CRVDIETHLNKDL 77
           C+  + T     L
Sbjct: 367 CKAKLSTSFAALL 379

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 34.7 bits (80), Expect = 4e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 18 RCPICRVDIETHLNKDLLQ-PTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE 70
          RC IC          +          C H +   C+ ++LS   +CP C V + 
Sbjct: 24 RCGIC---------FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.65
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.62
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.6
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.6
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.59
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.59
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.58
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.58
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.56
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.55
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.55
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.55
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.54
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.54
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.53
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.52
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.52
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.51
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.5
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.49
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.49
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.48
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.47
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.47
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.46
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.46
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.46
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.45
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.45
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.44
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.44
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.43
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.43
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.43
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.43
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.42
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.41
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.4
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.4
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.39
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.39
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.35
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.35
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.34
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.34
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.32
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.3
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.29
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.28
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.27
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.26
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.25
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.25
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.21
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.21
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.19
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.16
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.09
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.06
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.05
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.98
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.92
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.9
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.84
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.79
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.78
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.78
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.74
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.67
3nw0_A	238	Non-structural maintenance of chromosomes element	98.36
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.29
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.62
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.56
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.3
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.29
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.06
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.03
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.03
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	97.02
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	96.95
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	96.95
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	96.93
2ect_A	78	Ring finger protein 126; metal binding protein, st	96.92
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	96.87
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	96.81
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.77
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.77
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	96.7
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	96.59
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.51
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	96.35
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	96.06
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.04
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.0
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	95.95
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	95.87
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	95.78
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.72
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	95.48
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	95.43
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	95.43
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	95.21
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	95.11
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	95.06
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	94.97
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	94.88
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	94.85
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	94.77
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	94.68
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	94.55
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	94.53
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	94.49
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	94.4
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	94.38
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	94.31
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	94.1
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	93.8
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	93.59
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	93.29
1z6u_A	150	NP95-like ring finger protein isoform B; structura	93.09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	93.05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	92.84
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	92.71
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	92.67
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	91.53
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	91.53
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	90.23
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	90.11
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	89.77
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	89.61
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	89.5
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	89.35
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	88.99
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	88.53
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	88.29
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	87.37
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	87.11
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	86.48
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	86.24
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	85.96
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	85.34
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	84.73
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	84.59
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	84.49
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	83.76
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	83.52
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	83.37
1z60_A	59	TFIIH basal transcription factor complex P44 subun	82.81
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	82.6

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.65  E-value=1.1e-16  Score=78.67  Aligned_cols=52  Identities=38%  Similarity=0.951  Sum_probs=43.9

Q ss_pred             hcCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      +.++..|+||++.+..      ...+..++ |+|.||..|+.+|+..+.+||+||..+.
T Consensus         2 ~~~~~~C~IC~~~~~~------~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELED------GEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCT------TSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccC------CCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            3567789999999876      44566676 9999999999999999889999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.62  E-value=2.2e-16  Score=80.80  Aligned_cols=55  Identities=56%  Similarity=1.148  Sum_probs=46.0

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      .++..|+||++.+..      ...+..++|+|.||..||..|+..+..||+||..+.....
T Consensus        12 ~~~~~C~IC~~~~~~------~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           12 DTEEKCTICLSILEE------GEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TCCCSBTTTTBCCCS------SSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCeeCCccccC------CCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            446679999998865      4456778999999999999999888899999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.60  E-value=4.9e-16  Score=81.23  Aligned_cols=56  Identities=34%  Similarity=0.882  Sum_probs=46.2

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      ..++..|+||++.+..      ...+..++|+|.||..||.+|+..+..||+||..+.....
T Consensus        12 ~~~~~~C~IC~~~~~~------~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           12 VGSGLECPVCKEDYAL------GESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSSCCCTTTTSCCCT------TSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCCeeCCccccC------CCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            4557789999999865      3444567899999999999999988899999999876543

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.9e-16  Score=82.32  Aligned_cols=53  Identities=45%  Similarity=0.970  Sum_probs=44.7

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .++..|+||++.+..      ...+..++|+|.||..||.+|+..+..||+||..+...
T Consensus        21 ~~~~~C~IC~~~~~~------~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           21 SEQTLCVVCMCDFES------RQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCEETTTTEECCB------TCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCCeECCcccCC------CCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            456789999999876      44456789999999999999998888999999987653

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.59  E-value=3.5e-16  Score=84.20  Aligned_cols=52  Identities=35%  Similarity=0.820  Sum_probs=44.0

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      .++..|+||++.+..      ...+..++|+|.||..||..|+..+..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~------~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVK------GDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCT------TCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcC------CCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            345679999998866      4456678999999999999999988899999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=5.7e-16  Score=80.25  Aligned_cols=55  Identities=29%  Similarity=0.713  Sum_probs=45.0

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      +.++..|+||++.+..      ......++|+|.||..||.+|+..+..||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~------~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKP------RDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCCSCBCSSSCCBCCS------SSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCCcCCCcccCC------CCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            3456789999999876      334455689999999999999988889999999886543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.58  E-value=5.3e-16  Score=79.62  Aligned_cols=61  Identities=25%  Similarity=0.496  Sum_probs=47.1

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD   76 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   76 (81)
                      .++..|+||++.+.....  ....+..++|||.||..|+.+|+..+..||+||..+......+
T Consensus         8 ~~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   68 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   68 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHT--TTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred             CCCCCCcccChhhhcccc--ccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence            456789999999865210  1123367889999999999999988889999999987655443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=9.2e-16  Score=81.03  Aligned_cols=62  Identities=29%  Similarity=0.663  Sum_probs=45.2

Q ss_pred             hhhcCCccccccccccccccc-----cCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLN-----KDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~-----~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +|..++..|+||++.+.....     ....+.+..+ +|+|.||..||.+|+..+.+||+||+.+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           10 SWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             eecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            444567889999999865210     0012223344 5999999999999999999999999988654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.56  E-value=1.1e-15  Score=76.92  Aligned_cols=60  Identities=23%  Similarity=0.481  Sum_probs=46.2

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKD   76 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   76 (81)
                      ++..|+||++.+.....  ....+..++|||.||..|+.+|+..+..||+||..+......+
T Consensus         2 ~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   61 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   61 (64)
T ss_dssp             CCCBCTTTCCBHHHHHH--TTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCCccChhhhCccc--cCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence            46789999999865210  0123367889999999999999988889999999987655443

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.55  E-value=2.3e-15  Score=83.24  Aligned_cols=61  Identities=26%  Similarity=0.520  Sum_probs=45.5

Q ss_pred             hhcCCccccccccccccccccC---------cCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKD---------LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~---------~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      |-.++..|+||++.|.......         .......++|+|.||..||..|+..+.+||+||..+...
T Consensus        33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~  102 (106)
T 3dpl_R           33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ  102 (106)
T ss_dssp             ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred             cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence            3456788999999987632100         011235578999999999999999999999999987543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.7e-15  Score=77.42  Aligned_cols=56  Identities=21%  Similarity=0.521  Sum_probs=45.6

Q ss_pred             hcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCcccccccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETHLNKDL   77 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   77 (81)
                      +.+...|+||++.+..         +..+ +|+|.||..||..|+.....||+||..+.......+
T Consensus        12 ~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           12 LTPYILCSICKGYLID---------ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCGGGSCTTTSSCCSS---------CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred             cCCCCCCCCCChHHHC---------cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence            4556789999998865         5554 899999999999999888899999999876544433

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.55  E-value=2.5e-15  Score=73.67  Aligned_cols=51  Identities=37%  Similarity=0.776  Sum_probs=42.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      ++..|+||++.+...     ...+..++|+|.||..|+.+|+..+..||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~-----~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTS-----RVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTT-----TSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCC-----CcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            467899999988541     234567889999999999999988899999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.54  E-value=3.7e-15  Score=84.18  Aligned_cols=75  Identities=25%  Similarity=0.581  Sum_probs=58.5

Q ss_pred             cccchhhHHhhhcCCccccccccccccccccCc----------------------CCCCcccCCCCcccHhhHHHHHhCC
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDL----------------------LQPTWRLPCMHLFHVECVDQWLSSN   59 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~----------------------~~~~~~~~C~h~fh~~Ci~~~~~~~   59 (81)
                      |.|+..|+.+|+.....||+|...+........                      ......++|||.||..|+.+|+...
T Consensus        34 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~  113 (133)
T 4ap4_A           34 HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA  113 (133)
T ss_dssp             CEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC
T ss_pred             ChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC
Confidence            899999999999888899999988764221000                      1112456899999999999999999


Q ss_pred             CCCCCCccccccccccc
Q psy14787         60 KRCPICRVDIETHLNKD   76 (81)
Q Consensus        60 ~~CP~Cr~~~~~~~~~~   76 (81)
                      ++||+||..+......+
T Consensus       114 ~~CP~Cr~~~~~~~~~~  130 (133)
T 4ap4_A          114 NTCPTCRKKINHKRYHP  130 (133)
T ss_dssp             SBCTTTCCBCCGGGEEE
T ss_pred             CCCCCCCCcCChhccee
Confidence            99999999987665443

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-15  Score=77.00  Aligned_cols=58  Identities=26%  Similarity=0.517  Sum_probs=44.7

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      .+.+...|+||++.+.....  ....+..++|||.||..||..|+.....||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTT--TTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCcccccccc--ccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34567789999999875210  11223678899999999999999888899999998753

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.53  E-value=2.8e-15  Score=86.00  Aligned_cols=52  Identities=33%  Similarity=0.783  Sum_probs=44.5

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .+.++..|+||++.+..         ++.++|||.||..||..|+..+..||+||..+...
T Consensus        49 ~~~~~~~C~iC~~~~~~---------~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           49 VLENELQCIICSEYFIE---------AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHHHHSBCTTTCSBCSS---------EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             hccccCCCcccCcccCC---------ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            34556789999999865         67789999999999999999889999999988643

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-15  Score=77.51  Aligned_cols=51  Identities=31%  Similarity=0.623  Sum_probs=43.7

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      .++..|+||++.+..         +..++|+|.||..||..|+..+..||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~---------~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---------PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSCCBCSSSSSBCSS---------EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred             CCCCCCccCCcccCC---------CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence            446789999998865         567899999999999999998889999999987543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.52  E-value=8e-15  Score=81.46  Aligned_cols=58  Identities=19%  Similarity=0.423  Sum_probs=41.7

Q ss_pred             CccccccccccccccccC---------cCCCCcccCCCCcccHhhHHHHHh-----CCCCCCCCcccccccc
Q psy14787         16 NKRCPICRVDIETHLNKD---------LLQPTWRLPCMHLFHVECVDQWLS-----SNKRCPICRVDIETHL   73 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~---------~~~~~~~~~C~h~fh~~Ci~~~~~-----~~~~CP~Cr~~~~~~~   73 (81)
                      +..|+||++.|.......         .......++|+|.||..||..|+.     ....||+||..+....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            468999999986532100         011222678999999999999993     4567999999886553

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.7e-14  Score=73.19  Aligned_cols=52  Identities=23%  Similarity=0.526  Sum_probs=42.8

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~   72 (81)
                      .+.+...|+||++.+..         +..++|||.||..|+.+|+. ....||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCS---------PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             SCCCCEECTTTCCEESS---------CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             cCCcCCCCCCCChHhcC---------eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            34567889999998865         55689999999999999995 456799999987653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.50  E-value=1.4e-14  Score=73.81  Aligned_cols=50  Identities=38%  Similarity=0.994  Sum_probs=42.1

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ++..|+||++.+..        .+..++|||.||..|+.+|+..+..||+||..+...
T Consensus         4 ~~~~C~IC~~~~~~--------~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDPSN--------YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCCS--------CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCccccC--------CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            46689999998754        236788999999999999998888999999988643

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.49  E-value=9.2e-15  Score=76.33  Aligned_cols=53  Identities=21%  Similarity=0.502  Sum_probs=44.0

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-------CCCCCCCcccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-------NKRCPICRVDIETHL   73 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-------~~~CP~Cr~~~~~~~   73 (81)
                      .+.++..|+||++.+..         +..++|||.||..|+..|+..       ...||.||..+....
T Consensus         8 ~~~~~~~C~IC~~~~~~---------p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            8 NVQEEVTCPICLELLTE---------PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCCEETTTTEECSS---------CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             hcccCCCCcCCCcccCC---------eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            35667889999999865         667899999999999999976       457999999987543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.49  E-value=1.6e-14  Score=75.43  Aligned_cols=51  Identities=18%  Similarity=0.416  Sum_probs=43.6

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~   72 (81)
                      +.++..|+||++.+..         +..++|||.||..||.+|+.. ...||+|+..+...
T Consensus         5 ~~~~~~C~IC~~~~~~---------Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            5 FPEYFRCPISLELMKD---------PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCCSS---------EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CcccCCCCCccccccC---------CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4567889999999866         667899999999999999987 66799999988644

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.3e-14  Score=73.84  Aligned_cols=52  Identities=25%  Similarity=0.619  Sum_probs=42.9

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~Cr~~~~~~   72 (81)
                      .+.++..|+||++.+..         +..++|||.||..|+..|+.   ....||+||..+...
T Consensus        16 ~~~~~~~C~IC~~~~~~---------~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           16 KLQEEVICPICLDILQK---------PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCCBCTTTCSBCSS---------EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             hCccCCEeccCCcccCC---------eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            34567889999998865         66779999999999999996   345799999988654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=4e-14  Score=74.53  Aligned_cols=53  Identities=25%  Similarity=0.594  Sum_probs=44.2

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC------CCCCCCCcccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS------NKRCPICRVDIETHL   73 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~------~~~CP~Cr~~~~~~~   73 (81)
                      .+.+...|+||++.+..         +..++|||.||..|+..|+..      ...||.||..+....
T Consensus        15 ~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQ---------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCCCTTTCSCCSS---------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             HccCCCCCCCCCcccCC---------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            34567889999998865         667899999999999999876      667999999987543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.47  E-value=1.3e-14  Score=79.19  Aligned_cols=53  Identities=25%  Similarity=0.661  Sum_probs=44.8

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcc-cCCCCcccHhhHHHHHhCC-CCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWR-LPCMHLFHVECVDQWLSSN-KRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~-~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~   72 (81)
                      ..+.++..|+||++.+..         +.. ++|||.||..||..|+... ..||.||..+...
T Consensus        17 ~~l~~~~~C~IC~~~~~~---------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           17 ESIAEVFRCFICMEKLRD---------ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHHHHHTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             ccCCCCCCCccCCccccC---------ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            455667889999999865         556 8999999999999999877 6899999998654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=4.4e-14  Score=74.39  Aligned_cols=51  Identities=27%  Similarity=0.608  Sum_probs=43.2

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC------CCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS------NKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~------~~~CP~Cr~~~~~~   72 (81)
                      +.++..|+||++.+..         +..++|+|.||..|+..|+..      ...||.||..+...
T Consensus        16 ~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           16 IKEEVTCPICLELLKE---------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CCTTTSCTTTCSCCSS---------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             CccCCCCcCCChhhCc---------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4567789999998865         567899999999999999976      55799999998754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.46  E-value=2.5e-14  Score=74.19  Aligned_cols=49  Identities=22%  Similarity=0.552  Sum_probs=41.2

Q ss_pred             hcCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCC--CCCCCCccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSN--KRCPICRVDIE   70 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~~   70 (81)
                      +.++..|+||++.+..         ++.++ |||.||..||..|+...  ..||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           12 IPDELLCLICKDIMTD---------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             SCGGGSCSSSCCCCTT---------CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCCcCCChHHhC---------CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            4556789999999866         67788 99999999999999754  57999999754

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.6e-14  Score=75.17  Aligned_cols=48  Identities=27%  Similarity=0.540  Sum_probs=41.9

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      .+...|+||++.+..         +..++|||.||..|+.+|+.....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN---------PVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS---------EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC---------eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            446689999999865         567899999999999999988889999999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.45  E-value=5.2e-15  Score=83.02  Aligned_cols=60  Identities=27%  Similarity=0.529  Sum_probs=2.6

Q ss_pred             hhcCCccccccccccccccccCc---------CCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDL---------LQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~---------~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      |-.++..|+||++.|........         ...+..++|+|.||..||.+|+..+.+||+||..+..
T Consensus        44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             ECCCC----------------------------------------------------------------
T ss_pred             ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            34557789999999875321110         1123346899999999999999999999999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=5.4e-14  Score=74.65  Aligned_cols=56  Identities=27%  Similarity=0.520  Sum_probs=44.1

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC---CCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN---KRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~---~~CP~Cr~~~~~~   72 (81)
                      .+.+...|+||++.+...     ...+..++|||.||..|+..|+..+   ..||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~~-----~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           11 ALREVLECPICMESFTEE-----QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTT-----SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hccCCCCCccCCcccccc-----CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            445677899999988651     1125677999999999999999765   6799999987654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.44  E-value=3.7e-14  Score=77.08  Aligned_cols=52  Identities=25%  Similarity=0.582  Sum_probs=43.4

Q ss_pred             hhcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .+.+...|+||++.+..         +..+ +|||.||..|+..|+..+..||+||..+...
T Consensus        18 ~~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNI---------AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             HHHHHTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             hCCCCCCcccCChhhCC---------cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            34556789999999865         4455 8999999999999999888999999988753

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.44  E-value=4.1e-14  Score=78.04  Aligned_cols=53  Identities=26%  Similarity=0.642  Sum_probs=45.3

Q ss_pred             hhhcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+.++..|+||++.+..         +..+ +|||.||..||..|+..+..||.||..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           10 TELNPHLMCVLCGGYFID---------ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HHHGGGTBCTTTSSBCSS---------EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             hccCCcCCCccCChHHhC---------cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            456778899999999865         5565 9999999999999999888999999988753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.43  E-value=4.9e-14  Score=79.55  Aligned_cols=59  Identities=25%  Similarity=0.515  Sum_probs=46.1

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      .++..|+||++.+..+.  .....+..++|||.||..||.+|+..+..||+||..+.....
T Consensus         5 ~~~~~C~IC~~~~~~~~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIV--QNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CCSCBCTTTCCBHHHHH--HTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCcccChhhhCcc--ccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            45778999999987610  001223678999999999999999998999999998875544

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=69.37  Aligned_cols=46  Identities=28%  Similarity=0.647  Sum_probs=38.4

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCC
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPIC   65 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~C   65 (81)
                      +.+.++..|+||++.+..         +..++|||.||..||.+|+.   ....||+|
T Consensus        15 ~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQK---------PVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSS---------CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCC---------eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            345667889999998865         67789999999999999997   44579987

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.43  E-value=1.3e-13  Score=76.15  Aligned_cols=54  Identities=30%  Similarity=0.628  Sum_probs=44.1

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC---CCCCCcccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICRVDIETHL   73 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~---~CP~Cr~~~~~~~   73 (81)
                      +.+.+...|+||++.+..         +..++|||.||..|+..|+..+.   .||.||..+....
T Consensus        16 ~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           16 NAMQKILECPICLELIKE---------PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HHHHHHTSCSSSCCCCSS---------CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             HhccCCCCCcccChhhcC---------eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            344557789999998865         66789999999999999997653   7999999887543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.43  E-value=5.9e-14  Score=79.06  Aligned_cols=52  Identities=21%  Similarity=0.498  Sum_probs=43.5

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCcccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIET   71 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~   71 (81)
                      ..+.++..|+||++.+..         +..++|||.||..||..|+..+. .||.||..+..
T Consensus        47 ~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           47 SKVEETFQCICCQELVFR---------PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHHHTBCTTTSSBCSS---------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             HhCccCCCCCcCChHHcC---------cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            344566789999999866         66789999999999999997554 79999998865

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.42  E-value=3.4e-14  Score=81.95  Aligned_cols=60  Identities=22%  Similarity=0.400  Sum_probs=50.7

Q ss_pred             cccchhhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIE   70 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~   70 (81)
                      .+|+.+.+.+.+.+...|+||++.+..         ++.++|||.||..||..|+..+. .||+||..+.
T Consensus        17 ~g~~~~~~~~~l~~~~~C~IC~~~~~~---------pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           17 PGFSKTLLGTKLEAKYLCSACRNVLRR---------PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CSBCGGGTGGGCCGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CCcchhhhhccCCcCcCCCCCChhhcC---------cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            467777777888889999999999866         56789999999999999997665 7999999753

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=3.5e-14  Score=72.70  Aligned_cols=51  Identities=33%  Similarity=0.862  Sum_probs=42.6

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      +.++..|+||++.+.        .  ..++|+|.||..|+.+|+.....||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~--------~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRA--------D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCC--------S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCcc--------C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            345678999998863        2  57889999999999999998889999999887543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.2e-13  Score=67.17  Aligned_cols=45  Identities=24%  Similarity=0.719  Sum_probs=36.9

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh---CCCCCCCC
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS---SNKRCPIC   65 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~---~~~~CP~C   65 (81)
                      .+.+...|+||++.+..         +..++|||.||..||.+|+.   ....||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKE---------PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSS---------CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCc---------cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567789999999866         56789999999999999954   45679987

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.40  E-value=2e-13  Score=69.01  Aligned_cols=57  Identities=19%  Similarity=0.426  Sum_probs=42.1

Q ss_pred             CCcccccccc-ccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCccccccccccc
Q psy14787         15 SNKRCPICRV-DIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETHLNKD   76 (81)
Q Consensus        15 ~~~~C~iC~~-~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~   76 (81)
                      ++..|+||++ .+..+     ......++|||.||..|+.+|+..+ ..||+||..+.......
T Consensus         2 ~~~~C~IC~~~~~~~~-----~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   60 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNP-----SLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV   60 (65)
T ss_dssp             CTTCCSTTTTHHHHCS-----SCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred             CCCcCCcCCCCccCCC-----ccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence            4678999999 66551     1111357899999999999997654 57999999987655443

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.39  E-value=1.6e-13  Score=73.55  Aligned_cols=49  Identities=22%  Similarity=0.531  Sum_probs=41.3

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCC--CCCCCCcccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSN--KRCPICRVDI   69 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~   69 (81)
                      .+.++..|+||++.+..         +..++ |||.||..||..|+...  ..||.||..+
T Consensus         9 ~~~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTD---------AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCTTTEETTTTEECSS---------CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cCCcCCCCCCCChhhcC---------ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            34567889999999866         77888 99999999999998643  5799999986

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.39  E-value=5.3e-14  Score=78.74  Aligned_cols=54  Identities=26%  Similarity=0.565  Sum_probs=44.9

Q ss_pred             HhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccc
Q psy14787         10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETH   72 (81)
Q Consensus        10 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~   72 (81)
                      .+.+.+...|+||++.+..         ++.++|||.||..||..|+..+. .||+||..+...
T Consensus        12 ~~~~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           12 DPPLESKYECPICLMALRE---------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             ccCCCCCCCCCcCChhhcC---------eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            3455667889999999866         56779999999999999997665 899999988754

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.35  E-value=3e-13  Score=78.63  Aligned_cols=51  Identities=22%  Similarity=0.540  Sum_probs=43.3

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~   72 (81)
                      +.+...|+||++.+..         +..++|||.||..||..|+..+. .||+||..+...
T Consensus        75 l~~~~~C~IC~~~~~~---------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQ---------PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHTBCTTTSSBCSS---------EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CccCCEeecCChhhcC---------CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4456789999998866         66789999999999999998765 799999998755

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=5.4e-13  Score=69.34  Aligned_cols=53  Identities=28%  Similarity=0.494  Sum_probs=41.9

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--CCCCCCcccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--KRCPICRVDIETHL   73 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~~~   73 (81)
                      ......|+||.+.+..      ..  ....|+|.||..||.+|+++.  .+||+|+..|....
T Consensus        12 ~~~i~~C~IC~~~i~~------g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQ------GQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSSSCBCSSSCCBCSS------SE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred             cCCCCcCcchhhHccc------CC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence            3455789999999864      21  233799999999999999877  78999999987543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.34  E-value=3.3e-13  Score=75.16  Aligned_cols=52  Identities=25%  Similarity=0.497  Sum_probs=43.3

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCcccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETHL   73 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~~   73 (81)
                      +.++..|+||++.+..         +..++|||.||..||.+|+.. +..||+||..+....
T Consensus        20 ~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           20 FVKSISCQICEHILAD---------PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHHHTBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             ccCCCCCCCCCcHhcC---------cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            4456789999999865         566899999999999999976 668999999987543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=5.4e-13  Score=70.30  Aligned_cols=53  Identities=28%  Similarity=0.744  Sum_probs=41.4

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCC-----CcccHhhHHHHHhCC--CCCCCCcccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCM-----HLFHVECVDQWLSSN--KRCPICRVDIETHL   73 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-----h~fh~~Ci~~~~~~~--~~CP~Cr~~~~~~~   73 (81)
                      .++..|.||++.++.      .. ...+||+     |.||..||.+|+..+  .+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~------~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDD------ES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCS------SS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccC------CC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            345689999988764      23 3467886     999999999999765  47999999987544

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.32  E-value=3.6e-13  Score=79.08  Aligned_cols=49  Identities=37%  Similarity=0.767  Sum_probs=40.3

Q ss_pred             cCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhC-CCCCCCCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSS-NKRCPICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~   71 (81)
                      .+...|+||++.+..         +..+ +|||.||..||..|+.. ...||+||..+..
T Consensus        52 ~~~~~C~IC~~~~~~---------p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           52 HSELMCPICLDMLKN---------TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHHBCTTTSSBCSS---------EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCCcccChHhhC---------cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            345689999999865         4454 89999999999999987 6679999998853

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.30  E-value=1.2e-12  Score=69.53  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .+.+...|+||++.|..         ++.++|||+|+..||..|+....+||+|+..+...
T Consensus        10 ~~p~~~~CpI~~~~m~d---------PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTD---------PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             TCCTTTBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             cCchheECcccCchhcC---------CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            34567889999999877         77889999999999999998778899999988654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.29  E-value=2e-13  Score=75.97  Aligned_cols=49  Identities=27%  Similarity=0.590  Sum_probs=41.5

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCcccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIET   71 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~   71 (81)
                      .++..|+||++.+..         +..++|||.||..||..|+.. ...||.||..+..
T Consensus        13 ~~~~~C~iC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVE---------PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSS---------CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCc---------eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            446789999999865         677899999999999999976 5579999998864

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.28  E-value=1.1e-12  Score=73.22  Aligned_cols=51  Identities=25%  Similarity=0.535  Sum_probs=42.9

Q ss_pred             HhhhcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         10 DQWLSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        10 ~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      .+.+.+...|+||++.+..         +..+ +|||.||..||..|+.  ..||+||..+..
T Consensus        16 ~~~l~~~~~C~IC~~~~~~---------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           16 LDRLEKLLRCSRCTNILRE---------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HHHHHHTTSCSSSCSCCSS---------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             HHhchhCCCCCCCChHhhC---------ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            3455678899999999865         6677 8999999999999987  779999998854

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.27  E-value=2e-12  Score=70.67  Aligned_cols=51  Identities=16%  Similarity=0.200  Sum_probs=44.6

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+...|+||++.|..         ++.++|||+|+..||..|+....+||.|+..+...
T Consensus        26 ~p~~~~CpI~~~~m~d---------PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           26 APDEFRDPLMDTLMTD---------PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             CSTTTBCTTTCSBCSS---------EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             CcHhhCCcCccCcccC---------CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            3557789999999877         77889999999999999998888899999988754

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.26  E-value=3.2e-12  Score=69.63  Aligned_cols=51  Identities=16%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCC-CcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCM-HLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+...|+||++.|..         ++.++|| |+|+..||..|+....+||+|+..+...
T Consensus        19 ~p~~~~CpI~~~~m~d---------PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCD---------PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHhcCCcCccccccC---------CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            4567889999999877         7788999 9999999999998888899999988754

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.25  E-value=7e-12  Score=65.71  Aligned_cols=53  Identities=21%  Similarity=0.408  Sum_probs=40.1

Q ss_pred             hcCCccccccccccccccccCcCCCCccc--CCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRL--PCMHLFHVECVDQWLSS-NKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~   72 (81)
                      +.++..|+||++.+..       ..+..+  +|||.||..|+.+++.. ...||.||..+...
T Consensus         8 ~~~~~~CpICle~~~~-------~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEI-------DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCBCTTTCCBCCT-------TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             cccCCcCCccCccCcc-------ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            4667889999997743       113333  49999999999998743 45799999988654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.25  E-value=2.3e-12  Score=63.48  Aligned_cols=47  Identities=26%  Similarity=0.646  Sum_probs=39.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      +...|+||++.+..         +..++|||.||..|+..|   ...||+||..+....
T Consensus         5 ~~~~C~IC~~~~~~---------p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            5 QFLRCQQCQAEAKC---------PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBC---------CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             cCCCceEeCCccCC---------eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            46779999999866         678899999999999773   567999999887543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.21  E-value=1.7e-12  Score=76.42  Aligned_cols=59  Identities=27%  Similarity=0.589  Sum_probs=46.8

Q ss_pred             cchhhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCccccccc
Q psy14787          4 FHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIETH   72 (81)
Q Consensus         4 ~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~~   72 (81)
                      |+.+ +...+.+...|+||++.+..         ++.++|||.|+..||.+|+..+. .||.||..+...
T Consensus         7 ~~~~-~~~~~~~~~~C~IC~~~~~~---------pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A            7 YDVE-FDPPLESKYECPICLMALRE---------AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             BCSE-ESSCCCGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CChh-hccCCCCCCCCCCCChhhcC---------cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4444 33455677899999999866         56789999999999999997644 899999988754

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.21  E-value=5e-12  Score=63.91  Aligned_cols=49  Identities=27%  Similarity=0.516  Sum_probs=40.4

Q ss_pred             CCccccccccccccccccCcCCCCccc--CCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRL--PCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ++..|.||++....         +..+  ||||. |+..|+..|...+..||+||..+...
T Consensus         7 ~~~~C~IC~~~~~~---------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~   58 (64)
T 2vje_A            7 AIEPCVICQGRPKN---------GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI   58 (64)
T ss_dssp             GGSCCTTTSSSCSC---------EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred             CcCCCCcCCCCCCC---------EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence            45679999987644         4444  99999 89999999998888999999988643

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.19  E-value=1.6e-11  Score=80.38  Aligned_cols=51  Identities=29%  Similarity=0.707  Sum_probs=43.1

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCcccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETHL   73 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~~   73 (81)
                      .....|+||++.+..         +..++|||.||..|+..|+. ....||+||..+....
T Consensus       330 ~~~~~C~ICle~~~~---------pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          330 STFQLCKICAENDKD---------VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             TSSSBCTTTSSSBCC---------EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCCCccCcCCCC---------eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            334689999998755         67889999999999999998 6778999999887653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.16  E-value=1.1e-11  Score=62.40  Aligned_cols=50  Identities=22%  Similarity=0.468  Sum_probs=40.4

Q ss_pred             cCCccccccccccccccccCcCCCCccc--CCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRL--PCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~--~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ..+..|.||++....         +..+  ||||. |+..|+.+|...+..||+||..+...
T Consensus         5 ~~~~~C~IC~~~~~~---------~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~   57 (63)
T 2vje_B            5 NLLKPCSLCEKRPRD---------GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV   57 (63)
T ss_dssp             GGGSBCTTTSSSBSC---------EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred             CcCCCCcccCCcCCC---------eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence            345679999987543         3344  99998 99999999998888999999988643

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.15  E-value=6.8e-12  Score=64.99  Aligned_cols=49  Identities=29%  Similarity=0.583  Sum_probs=40.7

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+.++..|+||++.+..         +..++|||. ||..|+..|    ..||+||..+...
T Consensus        19 ~~~~~~~~C~iC~~~~~~---------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           19 RRLQEEKLCKICMDRNIA---------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK   68 (74)
T ss_dssp             HHHHHHTBCTTTSSSBCC---------EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred             hcCccCCCCCCCCCCCCC---------EEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence            344567789999998755         678899999 999999988    7799999988754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.09  E-value=3.7e-11  Score=74.73  Aligned_cols=50  Identities=10%  Similarity=0.058  Sum_probs=42.2

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~   72 (81)
                      .+...|+||++.|..         |+.++|||+|+..||..|+..+ ..||+|+.++...
T Consensus       206 ~~~~~c~i~~~~~~d---------Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          206 PDYLCGKISFELMRE---------PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             CSTTBCTTTCSBCSS---------EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CcccCCcCcCCHhcC---------CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            346779999999876         7788999999999999999754 4599999998654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=7.8e-11  Score=61.03  Aligned_cols=49  Identities=29%  Similarity=0.583  Sum_probs=39.3

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+.++..|+||++.+..         +..++|||. ||..|+...    ..||+||..+...
T Consensus        20 ~~~~~~~~C~IC~~~~~~---------~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           20 RRLQEEKLCKICMDRNIA---------IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK   69 (75)
T ss_dssp             HHHHHHHSCSSSCSSCCC---------BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred             HcCCCCCCCCcCCCCCCC---------EEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence            444556789999998755         677899999 999999653    6799999988653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=4.6e-11  Score=64.44  Aligned_cols=48  Identities=25%  Similarity=0.571  Sum_probs=39.4

Q ss_pred             cCCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhCC------CCCCC--Cccc-cc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSSN------KRCPI--CRVD-IE   70 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~~------~~CP~--Cr~~-~~   70 (81)
                      .+...|+||++.|..         ++.++ |||+|+..||..|+..+      ..||+  |+.. +.
T Consensus         5 ~~~~~CPI~~~~~~d---------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SSCCBCTTTCSBCSS---------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             CcEeECcCcCchhcC---------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            456789999999876         77785 99999999999999653      47999  8755 44

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.98  E-value=2.2e-10  Score=68.27  Aligned_cols=50  Identities=10%  Similarity=0.049  Sum_probs=42.4

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~   72 (81)
                      .+...|+||++.|..         |+.++|||+|+..||..|+..+ .+||+|+.++...
T Consensus       104 p~~f~CPI~~elm~D---------PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMRE---------PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCC---------CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            456789999999876         7788999999999999999764 4699999988654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.92  E-value=2.8e-10  Score=73.63  Aligned_cols=59  Identities=20%  Similarity=0.536  Sum_probs=41.5

Q ss_pred             CCccccccccccccccccCcCCC-CcccCCCCcccHhhHHHHHhCC-----------CCCCCCcccccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQP-TWRLPCMHLFHVECVDQWLSSN-----------KRCPICRVDIETHLNK   75 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~-~~~~~C~h~fh~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~   75 (81)
                      +...|+||++.+...  +..... -...+|+|.||..|+.+|+.+.           +.||.|+.++..+.+.
T Consensus       307 ~~~ECaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~  377 (381)
T 3k1l_B          307 EELRCNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA  377 (381)
T ss_dssp             SCCSCSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred             CCccCcccceeecCC--CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence            345799999987641  111111 1235799999999999999642           3599999999877654

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.90  E-value=1.6e-10  Score=60.56  Aligned_cols=48  Identities=27%  Similarity=0.558  Sum_probs=39.3

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .+.++..|+||++.+..         +..+||||. |+..|+..|    ..||+||..+...
T Consensus        14 ~l~~~~~C~IC~~~~~~---------~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           14 KLKEAMLCMVCCEEEIN---------STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHHHHTBCTTTSSSBCC---------EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             cCCCCCEeEEeCcccCc---------EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            44556789999988655         778899999 999999876    3899999988754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.5e-09  Score=55.31  Aligned_cols=46  Identities=28%  Similarity=0.662  Sum_probs=37.8

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      .+...|.||++....         +..+||||. |+..|+..    ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~---------~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---------WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSSCCC---------CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcCCCC---------EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            446789999987644         778999999 99999984    36799999988754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=9.4e-10  Score=59.07  Aligned_cols=53  Identities=21%  Similarity=0.477  Sum_probs=37.9

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----C----CCCCC--Cccc--ccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----N----KRCPI--CRVD--IETHL   73 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~----~~CP~--Cr~~--~~~~~   73 (81)
                      +...|+||++.+..      .......+|||.||..|+..++..    +    ..||.  |+..  +....
T Consensus         4 ~~~~C~IC~~~~~~------~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~   68 (94)
T 1wim_A            4 GSSGCKLCLGEYPV------EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE   68 (94)
T ss_dssp             SBCCCSSSCCCCBG------GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred             CCcCCcccCccccc------ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence            45689999998765      111122369999999999999853    1    25999  9988  65443

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.78  E-value=5.1e-09  Score=52.18  Aligned_cols=48  Identities=29%  Similarity=0.600  Sum_probs=35.2

Q ss_pred             CCccccccccccccccccCcCCCCcccCCC--C---cccHhhHHHHHhC--CCCCCCCcccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCM--H---LFHVECVDQWLSS--NKRCPICRVDIET   71 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~--h---~fh~~Ci~~~~~~--~~~CP~Cr~~~~~   71 (81)
                      +...|.||++....         ...+||.  +   .||..|+.+|+..  +..||+|+..+..
T Consensus         5 ~~~~CrIC~~~~~~---------~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEELGN---------ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSC---------CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCCCC---------ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            45679999886321         2356754  4   8999999999964  4679999988653

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.78  E-value=8.9e-10  Score=71.37  Aligned_cols=49  Identities=31%  Similarity=0.689  Sum_probs=41.2

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcccCCCCc-ccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHL-FHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~-fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      +.+.++..|+||++.+..         +..++|||. ||..|+..|    ..||+||..+...
T Consensus       290 ~~l~~~~~C~IC~~~~~~---------~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKEVS---------VVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT  339 (345)
T ss_dssp             HHHHTTCBCTTTSSSBCC---------EEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred             HhCcCCCCCCccCCcCCc---------eEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence            445667889999998765         778899999 999999987    6799999988754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.74  E-value=2.4e-09  Score=67.01  Aligned_cols=51  Identities=22%  Similarity=0.479  Sum_probs=41.0

Q ss_pred             hcCCccccccccccccccccCcCCCCcc-cCCCCcccHhhHHHHHhCC--CCCCC--Cccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWR-LPCMHLFHVECVDQWLSSN--KRCPI--CRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-~~C~h~fh~~Ci~~~~~~~--~~CP~--Cr~~~~~~   72 (81)
                      ......||||++.|..         |+. ..|||+|+..||..|+..+  ..||+  |+..+...
T Consensus       178 ~~~el~CPIcl~~f~D---------PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          178 GKIELTCPITCKPYEA---------PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             SBCCSBCTTTSSBCSS---------EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred             CceeeECcCccCcccC---------CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence            3456789999999876         555 4899999999999998764  35999  99877543

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.67  E-value=5.8e-09  Score=52.11  Aligned_cols=51  Identities=12%  Similarity=0.119  Sum_probs=42.4

Q ss_pred             CccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCcccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETHLNK   75 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   75 (81)
                      ...|+|+++.+.+         ++.. ++||+|...+|.+|+..+.+||+.+..+......
T Consensus         3 ~~~CpIs~~~m~d---------PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li   54 (61)
T 2bay_A            3 HMLCAISGKVPRR---------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   54 (61)
T ss_dssp             -CCCTTTCSCCSS---------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             eEEecCCCCCCCC---------CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence            3579999999866         6676 8999999999999998778899999988765443

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.36  E-value=4.1e-07  Score=56.30  Aligned_cols=49  Identities=29%  Similarity=0.503  Sum_probs=38.5

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC--CCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK--RCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~--~CP~Cr~~~~~~   72 (81)
                      ...|.||.+.+..      +  .....|++.||..|+..|++...  .||.|+..|...
T Consensus       180 i~~C~iC~~iv~~------g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQ------G--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSS------C--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhC------C--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            5679999998754      1  22334999999999999997654  799999998755

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.29  E-value=3.2e-07  Score=49.70  Aligned_cols=47  Identities=26%  Similarity=0.581  Sum_probs=35.8

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETH   72 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~   72 (81)
                      .|.+|.-.+..        ..+..||+|+|+.+|+..|.+ ..+.||.|+..+...
T Consensus         3 fC~~C~~Pi~i--------ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKV--------YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSE--------EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEE--------EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            47777665532        245679999999999999975 457899999987644

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.62  E-value=2.3e-05  Score=40.84  Aligned_cols=28  Identities=29%  Similarity=0.955  Sum_probs=24.0

Q ss_pred             CcccchhhHHhhhcCC--cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN--KRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~--~~C~iC~~~~~~   28 (81)
                      +|+||.+||.+|+...  ..|++|...+..
T Consensus        41 ~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           41 LHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             SCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            5999999999999654  589999998854

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=3.5e-05  Score=39.97  Aligned_cols=28  Identities=39%  Similarity=0.969  Sum_probs=25.1

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.||.+||.+|+.....||+|+..+..
T Consensus        49 ~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           49 NHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             SCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            3899999999999999999999988754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.30  E-value=0.0001  Score=35.09  Aligned_cols=26  Identities=54%  Similarity=1.258  Sum_probs=23.4

Q ss_pred             CcccchhhHHhhhcCCcccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDI   26 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~   26 (81)
                      .|.||..|+.+|+.....||+|+..+
T Consensus        28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~   53 (55)
T 1iym_A           28 GHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence            38999999999999999999998765

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.29  E-value=0.00011  Score=40.09  Aligned_cols=26  Identities=35%  Similarity=0.974  Sum_probs=24.2

Q ss_pred             cccchhhHHhhhcCCccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      |.||..||..|+.....||+|+..+.
T Consensus        75 H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           75 HAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             cEECHHHHHHHHHcCCcCcCCCCcce
Confidence            89999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.06  E-value=0.00014  Score=36.91  Aligned_cols=27  Identities=56%  Similarity=1.305  Sum_probs=24.3

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.||..|+.+|+.....||+|+..+..
T Consensus        46 H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           46 HEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             EEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            899999999999888899999987754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.05  E-value=0.00025  Score=35.28  Aligned_cols=28  Identities=79%  Similarity=1.538  Sum_probs=24.8

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.||..|+.+|+.....||+|+..+..
T Consensus        36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           36 MHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            3899999999999888899999988754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.04  E-value=0.00028  Score=37.21  Aligned_cols=28  Identities=39%  Similarity=0.988  Sum_probs=24.7

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.||..|+..|+.....||+|...+..
T Consensus        62 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           62 HHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             TEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3899999999999999999999987643

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.03  E-value=0.00032  Score=38.17  Aligned_cols=28  Identities=25%  Similarity=0.605  Sum_probs=24.0

Q ss_pred             CcccchhhHHhhh-----cCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWL-----SSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~-----~~~~~C~iC~~~~~~   28 (81)
                      -|.||.+||..|+     .....||+|+..+..
T Consensus        62 ~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           62 SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            3899999999999     456789999998865

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.03  E-value=0.00017  Score=34.25  Aligned_cols=26  Identities=35%  Similarity=0.781  Sum_probs=23.2

Q ss_pred             CcccchhhHHhhhcCCcccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDI   26 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~   26 (81)
                      .|.||.+|+.+|+.....||+|...+
T Consensus        28 gH~fc~~Ci~~~~~~~~~CP~Cr~~~   53 (55)
T 2ecm_A           28 GHLLHRTCYEEMLKEGYRCPLCSGPS   53 (55)
T ss_dssp             SCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred             CCcccHHHHHHHHHcCCcCCCCCCcC
Confidence            38999999999998889999998765

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.95  E-value=0.00024  Score=35.08  Aligned_cols=27  Identities=33%  Similarity=0.802  Sum_probs=23.9

Q ss_pred             CcccchhhHHhhhcCCccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      -|.|+.+|+.+|+.....||+|...+.
T Consensus        41 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           41 GHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            389999999999988889999988764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.95  E-value=0.00039  Score=34.64  Aligned_cols=28  Identities=36%  Similarity=1.062  Sum_probs=25.2

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+.+|+.+|+.....||+|+..+..
T Consensus        33 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           33 AHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             TEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             CCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            3899999999999989999999988765

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.93  E-value=0.0005  Score=34.58  Aligned_cols=28  Identities=36%  Similarity=0.956  Sum_probs=24.8

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.||..|+.+|+.....||+|+..+..
T Consensus        37 ~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           37 KHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            3899999999999888899999988754

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.92  E-value=0.00028  Score=35.91  Aligned_cols=28  Identities=39%  Similarity=1.053  Sum_probs=25.2

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.||..|+.+|+.....||+|+..+..
T Consensus        37 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           37 NHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            3899999999999988999999998765

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=96.87  E-value=0.00034  Score=34.84  Aligned_cols=27  Identities=33%  Similarity=0.842  Sum_probs=24.6

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+.+|+.+|+.....||+|...+..
T Consensus        37 H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A           37 HVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             ChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            899999999999888999999998754

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=96.81  E-value=0.00039  Score=33.80  Aligned_cols=28  Identities=32%  Similarity=0.770  Sum_probs=24.8

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+.+|+.+|+.....||+|...+..
T Consensus        29 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A           29 GHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             SCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            3899999999999888899999988754

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.77  E-value=0.0012  Score=33.77  Aligned_cols=27  Identities=33%  Similarity=0.709  Sum_probs=23.9

Q ss_pred             cccchhhHHhhhcCC--cccccccccccc
Q psy14787          2 HLFHVECVDQWLSSN--KRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~--~~C~iC~~~~~~   28 (81)
                      |.||..||.+|+...  ..||+|...+..
T Consensus        36 h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           36 IRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            889999999999876  789999988754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.77  E-value=0.00021  Score=39.71  Aligned_cols=26  Identities=35%  Similarity=0.974  Sum_probs=0.0

Q ss_pred             cccchhhHHhhhcCCccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      |.||..||.+|+.....||+|+..+.
T Consensus        86 H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           86 HAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             --------------------------
T ss_pred             ceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            89999999999999999999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.70  E-value=0.00064  Score=34.02  Aligned_cols=28  Identities=36%  Similarity=0.657  Sum_probs=25.1

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+.....|++|+..+..
T Consensus        34 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           34 KHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             TEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            3899999999999988999999998754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.59  E-value=0.0014  Score=32.78  Aligned_cols=28  Identities=25%  Similarity=0.729  Sum_probs=25.2

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+.....||+|...+..
T Consensus        35 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           35 LHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             CCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            4899999999999888899999998865

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.51  E-value=0.00071  Score=33.40  Aligned_cols=28  Identities=36%  Similarity=1.111  Sum_probs=24.7

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+.....||+|...+..
T Consensus        25 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A           25 LHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3899999999999888899999988754

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=96.35  E-value=0.013  Score=30.66  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHH
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW   55 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~   55 (81)
                      ..+..|.||-..-..       .....--|+.+||..|+.+.
T Consensus        13 ~~D~~C~VC~~~t~~-------~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           13 VNDEMCDVCEVWTAE-------SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTCCCCSS-------CCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcccCcccccccc-------ceeccccccccccHhhcccc
Confidence            457789999643211       11112238999999999997

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.06  E-value=0.0038  Score=30.61  Aligned_cols=28  Identities=32%  Similarity=0.622  Sum_probs=23.5

Q ss_pred             CcccchhhHHhhh-cCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWL-SSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+ .....||+|...+..
T Consensus        34 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           34 GHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             SCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3899999999999 456789999988754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.04  E-value=0.0021  Score=31.47  Aligned_cols=26  Identities=35%  Similarity=0.810  Sum_probs=21.8

Q ss_pred             cccchhhHHhhhcC--Cccccccccccc
Q psy14787          2 HLFHVECVDQWLSS--NKRCPICRVDIE   27 (81)
Q Consensus         2 ~~~~~~~~~~~~~~--~~~C~iC~~~~~   27 (81)
                      .+||..|+.+|+..  ...|++|...|.
T Consensus        31 ~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A           31 ENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             GSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             hhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            58999999999954  578999988763

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.00  E-value=0.0034  Score=35.36  Aligned_cols=27  Identities=41%  Similarity=1.075  Sum_probs=24.5

Q ss_pred             CcccchhhHHhhhcCCccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      .|.|+..|+..|+.....||+|...+.
T Consensus        72 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           72 AHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             SCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             CCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            499999999999999999999998774

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.95  E-value=0.0024  Score=32.64  Aligned_cols=27  Identities=26%  Similarity=0.548  Sum_probs=24.1

Q ss_pred             CcccchhhHHhhhcCCccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      .|.|+..|+.+|+.....||+|...+.
T Consensus        34 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           34 RHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             SCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            489999999999988889999998764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=95.87  E-value=0.0045  Score=32.75  Aligned_cols=28  Identities=29%  Similarity=0.736  Sum_probs=24.8

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+.....||+|...+..
T Consensus        42 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           42 SHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             CCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            3899999999999988999999987753

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=95.78  E-value=0.0048  Score=31.15  Aligned_cols=27  Identities=19%  Similarity=0.613  Sum_probs=23.8

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.|+..||.+|+.. ...||+|...+..
T Consensus        28 H~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A           28 QTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             EEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            89999999999986 7789999988754

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.72  E-value=0.0043  Score=33.00  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=24.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ   54 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~   54 (81)
                      ++..|.||.+.+..      ......+.|+|.|+..|+..
T Consensus         2 ee~~C~~C~~~~~~------~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQ------DAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCC------BCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCC------CceEECCcCChHHhHHHCHH
Confidence            45689999975322      11122388999999999998

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.48  E-value=0.0075  Score=29.93  Aligned_cols=28  Identities=25%  Similarity=0.672  Sum_probs=23.4

Q ss_pred             CcccchhhHHhhhc---CCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLS---SNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~---~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+.   ....||+|...+..
T Consensus        39 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           39 GHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            38999999999996   45689999988754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.43  E-value=0.0051  Score=31.60  Aligned_cols=28  Identities=29%  Similarity=0.640  Sum_probs=23.8

Q ss_pred             CcccchhhHHhhhcCC---cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN---KRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~---~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+...   ..||+|...+..
T Consensus        38 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           38 GHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            3899999999999764   789999998754

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=95.43  E-value=0.0079  Score=32.31  Aligned_cols=28  Identities=36%  Similarity=0.929  Sum_probs=25.0

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+.....||+|...+..
T Consensus        35 gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           35 LHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             CCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            4899999999999988999999988754

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=95.21  E-value=0.0067  Score=32.28  Aligned_cols=28  Identities=29%  Similarity=0.888  Sum_probs=24.2

Q ss_pred             CcccchhhHHhhhcCC-cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN-KRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~C~iC~~~~~~   28 (81)
                      -|.|+..||.+|+... ..||+|+..+..
T Consensus        42 gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           42 SKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             CCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            3899999999999876 699999998754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=95.11  E-value=0.0066  Score=30.48  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=22.5

Q ss_pred             CcccchhhHHhhhcCC--ccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN--KRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~--~~C~iC~~~~~   27 (81)
                      .|.|+..||.+|+...  ..||+|...+.
T Consensus        35 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           35 GNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            3899999999999654  68999998653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.06  E-value=0.012  Score=27.80  Aligned_cols=22  Identities=32%  Similarity=0.981  Sum_probs=17.7

Q ss_pred             CcccchhhHHhhh---cCCcccccc
Q psy14787          1 MHLFHVECVDQWL---SSNKRCPIC   22 (81)
Q Consensus         1 ~~~~~~~~~~~~~---~~~~~C~iC   22 (81)
                      .|.|+.+|+.+|+   .....||+|
T Consensus        34 gH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           34 GHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             CCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3899999999995   456678877

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.04  E-value=0.016  Score=28.88  Aligned_cols=46  Identities=26%  Similarity=0.463  Sum_probs=30.8

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC----CCCCCCcccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN----KRCPICRVDI   69 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~----~~CP~Cr~~~   69 (81)
                      .+..|.+|.+.         ...+..-.|...||..|+...+...    ..|+.|....
T Consensus        11 ~~~~C~vC~~~---------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---------CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            34569999753         2223334589999999998766442    3699997543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.97  E-value=0.014  Score=28.35  Aligned_cols=28  Identities=25%  Similarity=0.564  Sum_probs=22.7

Q ss_pred             CcccchhhHHhhhc-CCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLS-SNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~C~iC~~~~~~   28 (81)
                      -|.|..+|+.+|+. ....||+|...+..
T Consensus        27 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A           27 GHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            38999999999964 45679999988754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.88  E-value=0.01  Score=30.05  Aligned_cols=28  Identities=32%  Similarity=0.654  Sum_probs=23.7

Q ss_pred             CcccchhhHHhhhcC------Ccccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS------NKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~------~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+..      ...||+|...+..
T Consensus        38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           38 NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            389999999999876      6789999988754

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=94.85  E-value=0.0086  Score=30.13  Aligned_cols=28  Identities=18%  Similarity=0.483  Sum_probs=23.6

Q ss_pred             CcccchhhHHhhhcC-------Ccccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-------NKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-------~~~C~iC~~~~~~   28 (81)
                      .|.|...|+.+|+..       ...||+|...+..
T Consensus        31 gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           31 GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            389999999999976       6689999988754

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=94.77  E-value=0.016  Score=30.87  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+..+|.+|+.....||+|...+..
T Consensus        43 htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           43 VTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             eEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            889999999999888899999988754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.68  E-value=0.015  Score=28.10  Aligned_cols=22  Identities=32%  Similarity=0.751  Sum_probs=18.3

Q ss_pred             CcccchhhHHhhhc---CCcccccc
Q psy14787          1 MHLFHVECVDQWLS---SNKRCPIC   22 (81)
Q Consensus         1 ~~~~~~~~~~~~~~---~~~~C~iC   22 (81)
                      .|.|+.+|+.+|+.   ....||+|
T Consensus        39 gH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           39 GHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CCcchHHHHHHHHHcCCCCCcCcCC
Confidence            38999999999997   45578887

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=94.55  E-value=0.019  Score=30.76  Aligned_cols=27  Identities=11%  Similarity=0.171  Sum_probs=24.2

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+..+|.+|+.+...||+|...+..
T Consensus        49 htf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           49 TIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             EEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             CEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            789999999999988899999988754

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.53  E-value=0.012  Score=29.75  Aligned_cols=28  Identities=25%  Similarity=0.670  Sum_probs=23.7

Q ss_pred             CcccchhhHHhhhcC------Ccccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS------NKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~------~~~C~iC~~~~~~   28 (81)
                      .|.|+.+|+.+|+..      ...||+|...+..
T Consensus        38 gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           38 GHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            389999999999866      6789999988764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=94.49  E-value=0.014  Score=30.26  Aligned_cols=27  Identities=11%  Similarity=0.122  Sum_probs=24.1

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+..+|.+|+.+...||+|...+..
T Consensus        34 htf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           34 TVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             CEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            889999999999888899999988754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=94.40  E-value=0.018  Score=33.18  Aligned_cols=27  Identities=41%  Similarity=0.865  Sum_probs=23.6

Q ss_pred             CcccchhhHHhhhcC-Cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-NKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~   27 (81)
                      .|.|+..|+.+|+.. ...||+|...+.
T Consensus        74 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           74 LHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             CCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            389999999999986 778999998874

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=94.38  E-value=0.0073  Score=31.93  Aligned_cols=49  Identities=22%  Similarity=0.452  Sum_probs=31.5

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDIETH   72 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~~~~   72 (81)
                      .+..|.+|.+.         +.....-.|...||..|+.+-+..    ...||.|...-..+
T Consensus        24 n~~~C~vC~~~---------g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k   76 (88)
T 1fp0_A           24 SATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK   76 (88)
T ss_dssp             SSSCCSSSCSS---------SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred             CCCcCcCcCCC---------CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence            35679999753         222333358889999999765433    23599997654433

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=94.31  E-value=0.02  Score=31.40  Aligned_cols=28  Identities=29%  Similarity=0.691  Sum_probs=23.2

Q ss_pred             CcccchhhHHhhhcCC-cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN-KRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~C~iC~~~~~~   28 (81)
                      .|.|+..|+..|+... ..||+|...+..
T Consensus        71 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           71 QHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3899999999999754 489999988754

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.10  E-value=0.024  Score=30.37  Aligned_cols=28  Identities=32%  Similarity=0.784  Sum_probs=23.4

Q ss_pred             CcccchhhHHhhhcCC---cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN---KRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~---~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+...   ..||+|...+..
T Consensus        40 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           40 DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            3899999999999754   389999988754

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=93.80  E-value=0.11  Score=28.21  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHH
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVD   53 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~   53 (81)
                      ....|.+|...-..+..+....-+....|+..||..|+.
T Consensus         4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~   42 (112)
T 3v43_A            4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK   42 (112)
T ss_dssp             CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred             cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence            456789997754332222222333445699999999994

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=93.59  E-value=0.026  Score=30.60  Aligned_cols=28  Identities=32%  Similarity=0.587  Sum_probs=24.1

Q ss_pred             CcccchhhHHhhhcC-Ccccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      .|.|...|+.+|+.. ...||+|...+..
T Consensus        42 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           42 KHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             SCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            389999999999976 6789999998754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=93.29  E-value=0.023  Score=27.73  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|++++|.+|+.....||+..+.+..
T Consensus        24 ~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A           24 TIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             EEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             cEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            679999999999888889999988754

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=93.09  E-value=0.044  Score=31.30  Aligned_cols=28  Identities=25%  Similarity=0.691  Sum_probs=23.6

Q ss_pred             CcccchhhHHhhhcCCc-ccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNK-RCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~-~C~iC~~~~~~   28 (81)
                      .|.|...|+.+|+.... .||+|...+..
T Consensus        97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           97 FHNVCKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence            38999999999997654 89999998754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=93.05  E-value=0.027  Score=30.70  Aligned_cols=27  Identities=19%  Similarity=0.429  Sum_probs=23.0

Q ss_pred             cccchhhHHhhhcCCc-ccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNK-RCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~-~C~iC~~~~~~   28 (81)
                      |.|...|+.+|+.... .||+|...+..
T Consensus        38 H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           38 HRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             ChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            8999999999997654 89999987754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=92.84  E-value=0.031  Score=30.19  Aligned_cols=27  Identities=22%  Similarity=0.571  Sum_probs=23.3

Q ss_pred             CcccchhhHHhhhcC-Cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-NKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~   27 (81)
                      -|.|...|+.+|+.. ...||+|...+.
T Consensus        34 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           34 NHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             SCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            389999999999966 678999999875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=92.71  E-value=0.04  Score=28.48  Aligned_cols=26  Identities=23%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             CcccchhhHHhhhcC--Ccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS--NKRCPICRVDI   26 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~~C~iC~~~~   26 (81)
                      .|.|...|+.+|+..  ...||+|...+
T Consensus        33 gH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           33 GNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            389999999999853  36899999886

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=92.67  E-value=0.1  Score=38.08  Aligned_cols=51  Identities=14%  Similarity=0.122  Sum_probs=42.5

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCC-CcccHhhHHHHHhCCCCCCCCcccccccc
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCM-HLFHVECVDQWLSSNKRCPICRVDIETHL   73 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~   73 (81)
                      .+...|||-.+.+..         |+.++-| +.|=...|.+|+.++.+||.=|.++....
T Consensus       889 P~~F~cPIs~~lM~D---------PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~  940 (968)
T 3m62_A          889 PDEFLDPLMYTIMKD---------PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED  940 (968)
T ss_dssp             CGGGBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred             cHHhCCcchhhHHhC---------CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence            445669999988866         7788887 58999999999998889999999887543

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=91.53  E-value=0.076  Score=25.85  Aligned_cols=44  Identities=20%  Similarity=0.542  Sum_probs=28.2

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRV   67 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~   67 (81)
                      .+..|.+|.+.         ...+..-.|...||..|+..-+..    ...||.|..
T Consensus        10 ~~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A           10 HQDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCccCCCC---------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            35679999763         111223358889999999864322    235999964

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=91.53  E-value=0.089  Score=24.47  Aligned_cols=44  Identities=30%  Similarity=0.603  Sum_probs=25.6

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRV   67 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~   67 (81)
                      .|.+|...-..      ...+..-.|...||..|+..-+..    ...||.|+.
T Consensus         2 ~C~vC~~~~~~------~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGED------DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC------SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCC------CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            47777654211      112223358899999999653322    235998854

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=90.23  E-value=0.11  Score=28.14  Aligned_cols=25  Identities=28%  Similarity=0.748  Sum_probs=21.9

Q ss_pred             CcccchhhHHhhhcCCccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      .|.|...|+.+|+.  ..||+|...+.
T Consensus        42 gH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           42 EHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             SCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            38999999999987  78999998874

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=90.11  E-value=0.074  Score=25.90  Aligned_cols=45  Identities=20%  Similarity=0.490  Sum_probs=28.6

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD   68 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~   68 (81)
                      .+..|.+|.+.         +..+..-.|...||..|+..-+..    ...||.|...
T Consensus         8 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   56 (61)
T 1mm2_A            8 HMEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence            35569999753         222333358889999999754322    2359999654

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=89.77  E-value=0.066  Score=31.47  Aligned_cols=46  Identities=22%  Similarity=0.468  Sum_probs=30.4

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDI   69 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~   69 (81)
                      .+..|.+|...         +.....-.|...||..|+..-+..    ...||.|+...
T Consensus         3 ~~~~C~~C~~~---------g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG---------GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC---------SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC---------CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            35679999743         222333358899999998665433    23599997654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=89.61  E-value=0.16  Score=33.46  Aligned_cols=28  Identities=32%  Similarity=0.922  Sum_probs=24.4

Q ss_pred             CcccchhhHHhhhc-CCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLS-SNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~C~iC~~~~~~   28 (81)
                      .|.|+..|+.+|+. ....||+|+..+..
T Consensus       351 GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          351 GHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             CCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            38999999999998 67889999998754

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=89.50  E-value=0.25  Score=25.06  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=22.2

Q ss_pred             cccchhhHHhhh-cCCcccccccccccc
Q psy14787          2 HLFHVECVDQWL-SSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~C~iC~~~~~~   28 (81)
                      |.|...|+.++. .....||+|+..+..
T Consensus        35 H~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A           35 YQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             CCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            889999998876 346789999998865

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=89.35  E-value=1.4  Score=23.18  Aligned_cols=53  Identities=21%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIE   70 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~   70 (81)
                      ...|.||.+.+....+++.  .+..--|+-..|..|..--.+ .++.||.|+..+.
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~--FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDL--FVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSB--CCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CCccccccCccccCCCCCE--EEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            4679999998765332221  123334777789999865544 3456999999885

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=88.99  E-value=0.22  Score=28.09  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             cccchhhHHhhhcCC-cccccccccc
Q psy14787          2 HLFHVECVDQWLSSN-KRCPICRVDI   26 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~-~~C~iC~~~~   26 (81)
                      |.|...||.+|+... ..||+|...+
T Consensus        51 H~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           51 HRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            899999999999755 4899999865

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=88.53  E-value=0.17  Score=30.00  Aligned_cols=44  Identities=23%  Similarity=0.491  Sum_probs=29.4

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD   68 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~   68 (81)
                      +..|.+|.+.         +.....-.|...||..|+..-+..    ...||.|+..
T Consensus         2 ~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~   49 (189)
T 2ro1_A            2 ATICRVCQKP---------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   49 (189)
T ss_dssp             CCCBTTTCCC---------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred             CCcCccCCCC---------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence            4568899753         232444568899999999754322    2359999765

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=88.29  E-value=0.07  Score=26.88  Aligned_cols=49  Identities=22%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDIE   70 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~~   70 (81)
                      ...|.+|......      ..-+..-.|...||..|+..-...    ...||.|...+.
T Consensus        18 ~~~C~~C~~~~~~------~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           18 IWICPGCNKPDDG------SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             EECBTTTTBCCSS------CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CcCCCCCCCCCCC------CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            3459999765321      011112248889999999754322    235999976553

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=87.37  E-value=0.64  Score=24.13  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=25.9

Q ss_pred             CCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhC
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSS   58 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~   58 (81)
                      ....|.+|.+.++.      ..-+.... =.|.||.-|-+..+++
T Consensus        14 a~l~CtlC~erLEd------tHFVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           14 GPLCCTICHERLED------THFVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             CSCCCSSSCSCCSS------TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CeeEeecchhhhcc------CceeeCCCccCCeeeccccHHHHHh
Confidence            35679999999876      22111111 3789999999888754

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=87.11  E-value=0.034  Score=26.97  Aligned_cols=46  Identities=26%  Similarity=0.611  Sum_probs=29.0

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDI   69 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~   69 (81)
                      .+..|.+|...         +.-+..-.|...||..|+..-+..    ...||.|....
T Consensus         4 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   53 (60)
T 2puy_A            4 HEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM   53 (60)
T ss_dssp             CCSSCTTTCCC---------SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred             CCCCCcCCCCC---------CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence            45679999763         222233358899999999753322    23588886543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=86.48  E-value=0.22  Score=30.44  Aligned_cols=27  Identities=11%  Similarity=0.256  Sum_probs=22.3

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.|...||.+|+.. ...||+|...+..
T Consensus       228 h~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          228 ITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            89999999999965 3449999988754

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=86.24  E-value=0.14  Score=33.55  Aligned_cols=27  Identities=26%  Similarity=0.897  Sum_probs=22.3

Q ss_pred             cccchhhHHhhhcCC-----------cccccccccccc
Q psy14787          2 HLFHVECVDQWLSSN-----------KRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~-----------~~C~iC~~~~~~   28 (81)
                      |.||..|+.+|+...           ..||.|...+..
T Consensus       336 h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          336 LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            789999999999642           569999987754

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=85.96  E-value=0.19  Score=27.10  Aligned_cols=37  Identities=22%  Similarity=0.500  Sum_probs=23.6

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS   57 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~   57 (81)
                      .+..|.+|.+.-+.      ..-+.--.|...||..|+.....
T Consensus         6 ~~~~C~~C~~~g~~------~~ll~C~~C~~~~H~~Cl~~~~~   42 (111)
T 2ysm_A            6 SGANCAVCDSPGDL------LDQFFCTTCGQHYHGMCLDIAVT   42 (111)
T ss_dssp             CCSCBTTTCCCCCT------TTSEECSSSCCEECTTTTTCCCC
T ss_pred             CCCCCcCCCCCCCC------cCCeECCCCCCCcChHHhCCccc
Confidence            46679999765211      11123346899999999976653

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=85.34  E-value=0.58  Score=25.42  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=22.5

Q ss_pred             cccccccccccc-ccccCcCCCCcccCCCCcccHhhHHH
Q psy14787         17 KRCPICRVDIET-HLNKDLLQPTWRLPCMHLFHVECVDQ   54 (81)
Q Consensus        17 ~~C~iC~~~~~~-~~~~~~~~~~~~~~C~h~fh~~Ci~~   54 (81)
                      ..|.+|+..-.. .+.+....-+....|+..||..|+..
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~   40 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF   40 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence            458888765321 11222233333446999999999864

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.73  E-value=0.055  Score=25.84  Aligned_cols=43  Identities=28%  Similarity=0.649  Sum_probs=26.5

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICR   66 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr   66 (81)
                      .+..|.+|.+.         ...+..-.|...||..|+..-+..    ...||.|.
T Consensus         8 ~~~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~   54 (56)
T 2yql_A            8 HEDFCSVCRKS---------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ   54 (56)
T ss_dssp             SCCSCSSSCCS---------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred             CCCCCccCCCC---------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence            45679999763         222233358889999999753322    22477764

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=84.59  E-value=0.082  Score=26.10  Aligned_cols=45  Identities=24%  Similarity=0.533  Sum_probs=28.5

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD   68 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~   68 (81)
                      .+..|.+|...         +.-+..-.|...||..|+..-+..    ...||.|...
T Consensus         7 ~~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~   55 (66)
T 1xwh_A            7 NEDECAVCRDG---------GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA   55 (66)
T ss_dssp             CCCSBSSSSCC---------SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred             CCCCCccCCCC---------CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence            45679999753         221223358889999999753322    2359998653

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=84.49  E-value=0.17  Score=30.26  Aligned_cols=46  Identities=24%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVDI   69 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~~   69 (81)
                      .+..|.+|...         +.....-.|...||..|+..-+..    ...||.|+..-
T Consensus         6 ~~~~C~~C~~~---------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            6 NEDWCAVCQNG---------GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SCSSBTTTCCC---------EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCC---------CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            35669999753         111223358899999999765432    23699997653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=83.76  E-value=0.33  Score=27.87  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=22.7

Q ss_pred             cccchhhHHhhhcCC-cccccccccccc
Q psy14787          2 HLFHVECVDQWLSSN-KRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~-~~C~iC~~~~~~   28 (81)
                      |.|...|+.+|+... ..||+|...+..
T Consensus        38 H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           38 HRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            889999999998654 489999988765

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=83.52  E-value=1.1  Score=25.53  Aligned_cols=43  Identities=21%  Similarity=0.408  Sum_probs=27.2

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-----------CCCCCCCCcc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-----------SNKRCPICRV   67 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-----------~~~~CP~Cr~   67 (81)
                      +..|.+|.+-         ++-...-.|-.+||..|+.+-+.           ....||.|+.
T Consensus        63 ~d~C~vC~~G---------G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~  116 (142)
T 2lbm_A           63 DEQCRWCAEG---------GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP  116 (142)
T ss_dssp             BCSCSSSCCC---------SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred             CCeecccCCC---------CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence            4457777543         22122235889999999996542           2346999974

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=83.37  E-value=0.46  Score=23.77  Aligned_cols=42  Identities=19%  Similarity=0.384  Sum_probs=24.9

Q ss_pred             hhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787          7 ECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ   54 (81)
Q Consensus         7 ~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~   54 (81)
                      +....|..+ ..|.+|...|...     ...--.-.||.+|+..|...
T Consensus         3 ~~~p~W~~~-~~C~~C~~~F~~~-----~RrHHCR~CG~v~C~~Cs~~   44 (73)
T 1vfy_A            3 KTPADWIDS-DACMICSKKFSLL-----NRKHHCRSCGGVFCQEHSSN   44 (73)
T ss_dssp             ----CCCCC-SBCTTTCCBCBTT-----BCCEECTTTCCEECGGGSCE
T ss_pred             CCCCcCccC-CcccCCCCccCCc-----cccccCCCCCEEEcccccCC
Confidence            344567764 5899999888541     01111234999999998643

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=82.81  E-value=0.57  Score=22.76  Aligned_cols=43  Identities=23%  Similarity=0.451  Sum_probs=28.1

Q ss_pred             ccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCC
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC   65 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~C   65 (81)
                      ..|..|+..+..      ........|++.|+.+|=.---+.-..||.|
T Consensus        16 ~~C~~C~~~~~~------~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC   58 (59)
T 1z60_A           16 RFCYGCQGELKD------QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CEETTTTEECTT------SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CcccccCcccCC------CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence            459999888743      1113355699999999964322333469987

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=82.60  E-value=0.49  Score=27.92  Aligned_cols=27  Identities=11%  Similarity=0.239  Sum_probs=22.3

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.|+..+|..|+.. +..||+|...+..
T Consensus       126 htfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          126 ITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            88999999999965 3469999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-09
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-05
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-08
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-04
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	6e-08
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	0.003
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	7e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.001
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.002

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 46.9 bits (111), Expect = 2e-09
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET 71
          +  +RCPIC  D            +  LPC+H F   C+ +W+  N  CP+C+V +E+
Sbjct: 3  TVAERCPICLEDPS--------NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 36.5 bits (84), Expect = 2e-05
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDIET 28
          H F   C+ +W+  N  CP+C+V +E+
Sbjct: 26 HAFCYVCITRWIRQNPTCPLCKVPVES 52

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 3e-08
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 12 WLSSNKRCPICRVDI---------ETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRC 62
          W      C ICR  I                         C H FH  C+ +WL + + C
Sbjct: 17 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 76

Query: 63 PICRVDIE 70
          P+   + E
Sbjct: 77 PLDNREWE 84

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 1  MHLFHVECVDQWLSSNKRCPICRVDIE 27
           H FH  C+ +WL + + CP+   + E
Sbjct: 58 NHAFHFHCISRWLKTRQVCPLDNREWE 84

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 42.5 bits (100), Expect = 6e-08
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          C +C  ++E       L       C H FH ECVD WL S+  CP+CR+ +
Sbjct: 8  CAVCLAELEDGEEARFL-----PRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 36.4 bits (84), Expect = 1e-05
 Identities = 14/25 (56%), Positives = 18/25 (72%)

Query: 2  HLFHVECVDQWLSSNKRCPICRVDI 26
          H FH ECVD WL S+  CP+CR+ +
Sbjct: 29 HGFHAECVDMWLGSHSTCPLCRLTV 53

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDIETH 72
          S+ + C IC          +  +     PC HL    C+  W  S  + CP CR +I+  
Sbjct: 21 STFQLCKICA---------ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.5 bits (71), Expect = 0.003
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 2  HLFHVECVDQWLSSNKR-CPICRVDIETH 29
          HL    C+  W  S  + CP CR +I+  
Sbjct: 43 HLMCTSCLTSWQESEGQGCPFCRCEIKGT 71

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 1e-04
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 12/52 (23%)

Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDI 69
          RC  C+            +    LPC+H     C++       +CPIC+   
Sbjct: 8  RCQQCQ---------AEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 2e-04
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)

Query: 41 LPCMHLFHVECVDQWLSS-----NKRCPICR 66
            C H FH+ C+     +     + +CP C+
Sbjct: 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.4 bits (73), Expect = 7e-04
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICRVDI 69
           CP C+     + +  L+       C H     CVD         CP C   +
Sbjct: 5  GCPRCKTTKYRNPSLKLMVN----VCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.001
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)

Query: 6  VECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RC 62
          V+ V   +     CPIC          +L++      C H+F   C+ + L+  K   +C
Sbjct: 11 VQNVINAMQKILECPICL---------ELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61

Query: 63 PICRVDI 69
          P+C+ DI
Sbjct: 62 PLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 10/49 (20%)

Query: 19 CPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKR-CPICR 66
          C IC         + +L       C HLF   C+ + L      CP CR
Sbjct: 26 CQIC---------EHILADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.72
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.6
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.59
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.58
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.56
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.54
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.49
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.49
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.45
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.43
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.35
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.35
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.34
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.28
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.06
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.57
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.75
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.66
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.28
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.26
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.13
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.02
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.96
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	96.86
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	95.11
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	94.63
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	94.25
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	94.02
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	93.38
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	93.19
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	93.17
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	93.15
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	93.06
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	92.96
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	90.85
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	90.63
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	85.12
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	84.45
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	84.23
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	83.94
d2co8a2	36	Nedd9 interacting protein with calponin homology,	82.23

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.72  E-value=1.3e-18  Score=84.98  Aligned_cols=52  Identities=37%  Similarity=0.896  Sum_probs=43.7

Q ss_pred             hcCCccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIE   70 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~   70 (81)
                      +.++..|+||++.+..      ++.+..+ .|+|.||..|+.+|++++.+||+||..+.
T Consensus         2 ~ed~~~C~ICl~~~~~------~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           2 MDDGVECAVCLAELED------GEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCT------TSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCCeEECccccC------CCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567789999999976      4545555 59999999999999999999999998764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.60  E-value=1.4e-16  Score=80.57  Aligned_cols=49  Identities=39%  Similarity=1.028  Sum_probs=41.4

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      ..+.|+||++.+..        .+..++|||.||..|+.+|++.+.+||+||..+..
T Consensus         4 ~~d~C~IC~~~~~~--------~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSN--------YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--------CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccC--------CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            35679999998854        24568999999999999999988999999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.8e-16  Score=83.04  Aligned_cols=61  Identities=26%  Similarity=0.512  Sum_probs=45.9

Q ss_pred             hhhcCCccccccccccccccccC---------cCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKD---------LLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~---------~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      .|...+..|+||++.+.......         ....+..++|+|.||..||.+|++.+++||+||+.+..
T Consensus        16 ~~d~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          16 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             EESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             eecCCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            34456778999999886532111         11234567899999999999999999999999998864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=73.66  Aligned_cols=49  Identities=20%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC-CCCCCcccccc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK-RCPICRVDIET   71 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~-~CP~Cr~~~~~   71 (81)
                      +|+||++.+...     ...+..++|||.||..|+.+|+..++ +||+||+++..
T Consensus         2 eCpICl~~~~~~-----~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEID-----DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGG-----GTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCC-----CceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            699999998651     12344568999999999999997644 69999998764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.8e-15  Score=78.44  Aligned_cols=50  Identities=30%  Similarity=0.704  Sum_probs=41.7

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETHLN   74 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   74 (81)
                      ...|+||++.+..         ++.++|||.||..||.+|+.. ++.||+||..+.....
T Consensus        23 ~~~C~IC~~~~~~---------~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          23 FQLCKICAENDKD---------VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TTBCTTTSSSBCC---------EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCccCCCcCCC---------eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            4569999998765         678899999999999999975 5679999999875543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-15  Score=82.35  Aligned_cols=56  Identities=30%  Similarity=0.603  Sum_probs=45.5

Q ss_pred             HHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCC---CCCCCcccccccc
Q psy14787          9 VDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNK---RCPICRVDIETHL   73 (81)
Q Consensus         9 ~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~---~CP~Cr~~~~~~~   73 (81)
                      +.+.+.+...|+||++.+..         +..++|||.||..||..|+....   .||.||..+....
T Consensus        14 ~~~~l~~~l~CpIC~~~~~~---------pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          14 VINAMQKILECPICLELIKE---------PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HHHHHHHHTSCSSSCCCCSS---------CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             HHHhcccCcCCCccCchhCC---------eEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            44555667889999998866         67789999999999999996643   6999999886443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-15  Score=75.89  Aligned_cols=55  Identities=20%  Similarity=0.427  Sum_probs=41.1

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCcccccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETHL   73 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~~   73 (81)
                      ++..|+||++.+....    .......+|||.||..||..|+..+ ..||+||..+....
T Consensus         2 dd~~CpIC~~~~~~~~----~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNP----SLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCS----SCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCC----ceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            5778999998764310    1223456899999999999999654 57999999986543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.3e-15  Score=80.53  Aligned_cols=58  Identities=19%  Similarity=0.423  Sum_probs=41.3

Q ss_pred             CccccccccccccccccC---------cCCCCcccCCCCcccHhhHHHHHhCC-----CCCCCCcccccccc
Q psy14787         16 NKRCPICRVDIETHLNKD---------LLQPTWRLPCMHLFHVECVDQWLSSN-----KRCPICRVDIETHL   73 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~---------~~~~~~~~~C~h~fh~~Ci~~~~~~~-----~~CP~Cr~~~~~~~   73 (81)
                      +..|+||++.|.......         ....+..++|+|.||..||..|+..+     .+||+||+.+....
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCc
Confidence            567999999885421100         11223457899999999999999643     36999999886553

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.7e-15  Score=78.30  Aligned_cols=52  Identities=25%  Similarity=0.515  Sum_probs=42.7

Q ss_pred             hhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh-CCCCCCCCccccccc
Q psy14787         12 WLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS-SNKRCPICRVDIETH   72 (81)
Q Consensus        12 ~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~-~~~~CP~Cr~~~~~~   72 (81)
                      .+.+...|+||++.+..         ++.++|||.|+..||.+|++ ++..||.||.++...
T Consensus        19 d~~~~l~C~IC~~~~~~---------pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          19 HFVKSISCQICEHILAD---------PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             HHHHHTBCTTTCSBCSS---------EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             hhccCcCCccCCcchhc---------ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            33445789999998866         77889999999999999996 455799999987644

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.6e-15  Score=71.29  Aligned_cols=48  Identities=25%  Similarity=0.647  Sum_probs=39.5

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCCcccccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPICRVDIETHLNK   75 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   75 (81)
                      ...|+||++.+..         ++.++|||.||..||.+|   +..||+||..+......
T Consensus         6 ~l~C~IC~~~~~~---------p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~   53 (56)
T d1bora_           6 FLRCQQCQAEAKC---------PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT   53 (56)
T ss_dssp             CSSCSSSCSSCBC---------CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred             CCCCcccCcccCC---------CEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCCC
Confidence            4589999999866         678899999999999764   56799999998765443

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.3e-14  Score=70.61  Aligned_cols=49  Identities=12%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             ccccccccccccccccCcCCCCccc-CCCCcccHhhHHHHHhCCCCCCCCccccccccc
Q psy14787         17 KRCPICRVDIETHLNKDLLQPTWRL-PCMHLFHVECVDQWLSSNKRCPICRVDIETHLN   74 (81)
Q Consensus        17 ~~C~iC~~~~~~~~~~~~~~~~~~~-~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~~~   74 (81)
                      +.|+||++.+..         ++.+ .|||.|+..||.+|+..+++||+||.++....-
T Consensus         1 l~C~Ic~~~~~~---------Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           1 MLCAISGKVPRR---------PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCCTTTCSCCSS---------EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCCccCCchHHh---------cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            369999999865         5555 599999999999999988899999998876543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=2.8e-13  Score=69.72  Aligned_cols=52  Identities=17%  Similarity=0.375  Sum_probs=43.9

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC-CCCCCCcccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN-KRCPICRVDIETHL   73 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~-~~CP~Cr~~~~~~~   73 (81)
                      +.++..|+||++.|..         ++.++|||+|+..||..|+..+ ..||.|+..+....
T Consensus         5 iP~~l~CpIc~~~m~d---------PV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           5 FPEYFRCPISLELMKD---------PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             CSSSSSCTTTSCCCSS---------EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CCccCCCcCcCchhhC---------ceEccCCCcchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            4567889999999876         6788999999999999999765 56999999886543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3e-13  Score=69.93  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC-CCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS-NKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~-~~~CP~Cr~~~~~~   72 (81)
                      +.++..|+||++.|..         ++.++|||+|+..||.+|+.. +..||.|+..+...
T Consensus         4 iP~~l~CpIc~~l~~d---------Pv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           4 IPDYLCGKISFELMRE---------PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             CCSTTBCTTTCSBCSS---------EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CCccccCcCcCchhhh---------hcccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            3567889999999876         778899999999999999964 55799999987644

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-13  Score=73.22  Aligned_cols=50  Identities=24%  Similarity=0.517  Sum_probs=40.3

Q ss_pred             hhhcCCccccccccccccccccCcCCCCcc-cCCCCcccHhhHHHHHhCCCCCCCCcccccc
Q psy14787         11 QWLSSNKRCPICRVDIETHLNKDLLQPTWR-LPCMHLFHVECVDQWLSSNKRCPICRVDIET   71 (81)
Q Consensus        11 ~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~-~~C~h~fh~~Ci~~~~~~~~~CP~Cr~~~~~   71 (81)
                      +.+.+...|+||.+.|..         ++. .+|||.||..||.+|+.  ..||.||..+..
T Consensus        17 ~~l~~~l~C~IC~~~~~~---------pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          17 DRLEKLLRCSRCTNILRE---------PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             HHHHHTTSCSSSCSCCSS---------CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             HhhhhcCCCccCCchhhc---------CceeCCCCCchhHHHHHHHHh--ccccccCCcCch
Confidence            455667889999999865         544 47999999999999974  459999987654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.28  E-value=1.7e-12  Score=63.63  Aligned_cols=53  Identities=25%  Similarity=0.509  Sum_probs=36.6

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHh--CCCCCCCCcccccc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLS--SNKRCPICRVDIET   71 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~--~~~~CP~Cr~~~~~   71 (81)
                      +...|.||++.+...    .........|+|.||..||.+|+.  .+.+||+||+.+..
T Consensus         5 d~~~C~IC~~~~~~~----~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           5 DVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCccCCccCCCc----eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            456799999876541    001112233679999999999984  44579999998753

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.6e-11  Score=63.72  Aligned_cols=51  Identities=16%  Similarity=0.123  Sum_probs=43.3

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCC-CcccHhhHHHHHhCCCCCCCCccccccc
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCM-HLFHVECVDQWLSSNKRCPICRVDIETH   72 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~-h~fh~~Ci~~~~~~~~~CP~Cr~~~~~~   72 (81)
                      ..++..|+||.+.|..         ++.++|+ |.|...||.+|+..+..||.|+..+...
T Consensus        19 ~P~~f~CPI~~~lm~d---------PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCD---------PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSS---------EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             CcHHhCCcCchhHHHH---------HHhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            3557889999999877         7788766 5899999999999989999999988654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=4.7e-09  Score=55.03  Aligned_cols=46  Identities=22%  Similarity=0.433  Sum_probs=33.8

Q ss_pred             CCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCC--------CCCCCCc
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSN--------KRCPICR   66 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~--------~~CP~Cr   66 (81)
                      +...|+||++.+..      ...+..++|+|.||..|+..|+..+        -.||.|+
T Consensus         4 ~~~~C~IC~~~~~~------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPV------EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBG------GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccC------CceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            45679999998754      2334456799999999999998531        1499854

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.75  E-value=5.1e-06  Score=39.24  Aligned_cols=26  Identities=54%  Similarity=1.258  Sum_probs=23.6

Q ss_pred             CcccchhhHHhhhcCCcccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDI   26 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~   26 (81)
                      -|.||.+|+.+|+.....||+|+..+
T Consensus        28 ~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_          28 GHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            38999999999999999999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.4e-06  Score=41.67  Aligned_cols=27  Identities=33%  Similarity=0.911  Sum_probs=24.7

Q ss_pred             CcccchhhHHhhhcCCccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~   27 (81)
                      .|.||..||.+|+.....||+|+..+.
T Consensus        58 ~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          58 NHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             cCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            399999999999999999999998774

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.28  E-value=3.4e-05  Score=37.64  Aligned_cols=28  Identities=36%  Similarity=1.111  Sum_probs=25.0

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+.+|+.+|+.....||+|+..+..
T Consensus        25 ~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_          25 LHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            4999999999999999999999987753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.26  E-value=5.8e-05  Score=35.87  Aligned_cols=27  Identities=33%  Similarity=0.834  Sum_probs=22.6

Q ss_pred             CcccchhhHHhhhc--CCccccccccccc
Q psy14787          1 MHLFHVECVDQWLS--SNKRCPICRVDIE   27 (81)
Q Consensus         1 ~~~~~~~~~~~~~~--~~~~C~iC~~~~~   27 (81)
                      .|+||..|+.+|+.  ....||+|...|.
T Consensus        30 ~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_          30 LENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             GGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            38999999999994  4568999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00013  Score=33.72  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.||.+|+.+|+.. ...||+|+..+..
T Consensus        24 H~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_          24 YQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            89999999999975 4579999988753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=9.4e-05  Score=39.24  Aligned_cols=27  Identities=26%  Similarity=0.646  Sum_probs=22.6

Q ss_pred             cccchhhHHhhhcC-----Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-----NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-----~~~C~iC~~~~~~   28 (81)
                      |.||.+||.+|+..     ...||+|+..+..
T Consensus        63 H~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          63 HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            89999999999953     3479999988754

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=8.6e-05  Score=34.84  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=24.9

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+.++|.+|+.....||+|...+..
T Consensus        21 h~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1          21 TIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             EEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CcccHHHHHHHHhhccCCCccCCcCCH
Confidence            899999999999999999999998765

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00026  Score=34.06  Aligned_cols=27  Identities=26%  Similarity=0.620  Sum_probs=22.8

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.|+.+||.+|+.. ...||+|+..+..
T Consensus        28 H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_          28 HTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             hHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            89999999999854 5679999988754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0003  Score=35.14  Aligned_cols=28  Identities=36%  Similarity=0.946  Sum_probs=23.9

Q ss_pred             CcccchhhHHhhhcC-Ccccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      .|.|+.+|+.+|+.. ...||+|...+..
T Consensus        42 gH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          42 GHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             CCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            399999999999964 5679999998864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.004  Score=28.15  Aligned_cols=44  Identities=30%  Similarity=0.603  Sum_probs=27.1

Q ss_pred             cccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCcc
Q psy14787         18 RCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRV   67 (81)
Q Consensus        18 ~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~   67 (81)
                      .|.||...-..      ..-+.--.|...||..|+..-+..    ...||.|+.
T Consensus         2 ~C~vC~~~~~~------~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED------DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC------SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC------CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            47788654222      222223358999999999875433    225888864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0073  Score=31.09  Aligned_cols=28  Identities=32%  Similarity=0.784  Sum_probs=22.7

Q ss_pred             CcccchhhHHhhhcCC---cccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSN---KRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~---~~C~iC~~~~~~   28 (81)
                      -|.|...|+.+|+...   ..||+|...+..
T Consensus        40 gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          40 DHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            3999999999998543   479999988754

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.03  Score=27.97  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=23.8

Q ss_pred             hcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH
Q psy14787         13 LSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL   56 (81)
Q Consensus        13 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~   56 (81)
                      ...|..|.|| +.+..+     ...+ .--|+.+||..|+.+.-
T Consensus        12 v~~D~mC~vC-~v~t~~-----~l~p-CRvCtRv~H~~CL~r~g   48 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAE-----SLFP-CRVCTRVFHDGCLRRMG   48 (89)
T ss_dssp             CCCSCCCTTT-CCCCSS-----CCSS-CSSSSSCCCHHHHHHHT
T ss_pred             CCcCcccccc-Cccccc-----ceec-ceeecchhhHHHHHHhc
Confidence            3457789999 444330     1111 12289999999999983

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.013  Score=29.41  Aligned_cols=28  Identities=32%  Similarity=0.583  Sum_probs=23.2

Q ss_pred             CcccchhhHHhhhc-CCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLS-SNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~C~iC~~~~~~   28 (81)
                      -|.|...|+.+|+. ....||+|+..+..
T Consensus        42 gH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          42 KHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             SCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CChhhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            39999999999985 45689999987754

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.0089  Score=28.01  Aligned_cols=44  Identities=20%  Similarity=0.503  Sum_probs=28.3

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhC----CCCCCCCccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSS----NKRCPICRVD   68 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~----~~~CP~Cr~~   68 (81)
                      +..|.+|.+.         +.-+..-.|...||..|+...+..    ...||.|+..
T Consensus         9 ~~~C~~C~~~---------g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           9 MEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             CSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             cCCCcCCCCC---------CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            3458888653         222334468999999998654432    2359999654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.024  Score=28.96  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             cccchhhHHhhhcCCcccccccccccc
Q psy14787          2 HLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      |.|+..+|.+|+.....||+|...+..
T Consensus        43 ~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          43 VTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             chhhHHHHHHHHHhcCCcccccccccc
Confidence            479999999999999999999887643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.017  Score=29.33  Aligned_cols=26  Identities=27%  Similarity=0.730  Sum_probs=21.4

Q ss_pred             CcccchhhHHhhhcCCcccccccccccc
Q psy14787          1 MHLFHVECVDQWLSSNKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~C~iC~~~~~~   28 (81)
                      .|.|+..||.+|+..  .||+|...+..
T Consensus        42 gH~fC~~Ci~~~~~~--~CP~Cr~~~~~   67 (97)
T d1jm7b_          42 EHIFCSNCVSDCIGT--GCPVCYTPAWI   67 (97)
T ss_dssp             SCCBCTTTGGGGTTT--BCSSSCCBCSC
T ss_pred             CCchhHHHHHHHHhc--cccccCCcCch
Confidence            389999999999864  49999887643

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.015  Score=27.22  Aligned_cols=46  Identities=22%  Similarity=0.437  Sum_probs=30.5

Q ss_pred             cCCccccccccccccccccCcCCCCcccCCCCcccHhhHHHHHhCCCCCCCC
Q psy14787         14 SSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWLSSNKRCPIC   65 (81)
Q Consensus        14 ~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~~~~~~CP~C   65 (81)
                      .....|.-|+..+..      ........|++.|+.+|=.---+.-..||.|
T Consensus        13 ~~~~~C~gC~~~l~~------~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          13 NGERFCYGCQGELKD------QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CSCCEETTTTEECTT------SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCCccCCCCcCCC------CceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            345679999887754      2223456699999999964322334569987

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.06  E-value=0.047  Score=26.41  Aligned_cols=28  Identities=18%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             CcccchhhHHhhhcC-Ccccccccccccc
Q psy14787          1 MHLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      .|.|..+++.+|+.. ...|++|...+..
T Consensus        27 gh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_          27 GQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             TEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            389999999999965 4679999887643

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=0.019  Score=27.54  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=23.4

Q ss_pred             ccCCCCcccHhhHHHHHhCC----CCCCCCcccccccc
Q psy14787         40 RLPCMHLFHVECVDQWLSSN----KRCPICRVDIETHL   73 (81)
Q Consensus        40 ~~~C~h~fh~~Ci~~~~~~~----~~CP~Cr~~~~~~~   73 (81)
                      .-.|...||..|+...+...    ..||.|+..-....
T Consensus        22 Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~~~   59 (70)
T d1fp0a1          22 CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKE   59 (70)
T ss_dssp             CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCC
T ss_pred             CCCCChhhccccCCCCcCcCCCCCEECcCCcCcCccCc
Confidence            34599999999998765332    35999976544333

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.14  Score=24.72  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             CCccccccccccccccccCcCCCCcccC-CCCcccHhhHHHHHhC
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVECVDQWLSS   58 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~Ci~~~~~~   58 (81)
                      ....|.+|.+.++.      ..-+.... =+|.|+.-|-....++
T Consensus         7 ~~l~CtlC~erLEd------tHFVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           7 GPLCCTICHERLED------THFVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             CSCCCSSSCSCCSS------TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CceeeeeehhhhcC------CceEeCCCCcCCceeccccHHHHHh
Confidence            45789999999876      22111111 3789999999888754

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.63  E-value=0.056  Score=26.27  Aligned_cols=27  Identities=11%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             cccchhhHHhhhcC-Ccccccccccccc
Q psy14787          2 HLFHVECVDQWLSS-NKRCPICRVDIET   28 (81)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~C~iC~~~~~~   28 (81)
                      |.|...+|.+|+.. ...|++|...+..
T Consensus        27 htfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2          27 ITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CeecHHHHHHHHhcCCccCCCccccccc
Confidence            89999999999864 5679999987754

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.12  E-value=0.069  Score=25.72  Aligned_cols=45  Identities=20%  Similarity=0.532  Sum_probs=28.0

Q ss_pred             cchhhHHhhhcCCccccccccccccccccCcCCCCcccCCCCcccHhhHHH
Q psy14787          4 FHVECVDQWLSSNKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQ   54 (81)
Q Consensus         4 ~~~~~~~~~~~~~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~   54 (81)
                      |+.+....|.. +..|.+|...|...     ...-..-.||.+|+..|...
T Consensus         2 ~~~~~~p~W~~-~~~C~~C~~~F~~~-----~rrhhCr~CG~~~C~~C~~~   46 (72)
T d1dvpa2           2 FTADTAPNWAD-GRVCHRCRVEFTFT-----NRKHHCRNCGQVFCGQCTAK   46 (72)
T ss_dssp             CCCSCCCCCCC-CSBCTTTCCBCCSS-----SCCEECTTTCCEECSTTSCE
T ss_pred             CcCCCCCCCCc-CCccccCCCcccCc-----cccccccccCCeeChhhhCC
Confidence            34444556764 56799999988541     11112234999999988643

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.45  E-value=1.4  Score=21.79  Aligned_cols=55  Identities=20%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHHH-hCCCCCCCCccccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQWL-SSNKRCPICRVDIETH   72 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~~-~~~~~CP~Cr~~~~~~   72 (81)
                      ...|.||.+.+....+++.  .+..--|+--.|..|..-=. ..++.||.|+......
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~--FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~   71 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDL--FVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL   71 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSB--CCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred             cchhhhcccccccCCCCCE--EEEecccCCccchHHHHHHHhccCccCcccCChhhhh
Confidence            5679999998765333221  12233377778889986433 3455699999887644

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.23  E-value=0.068  Score=26.44  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=29.4

Q ss_pred             CccccccccccccccccCcCCCCcccCCCCcccHhhHHHH-----Hh---CCCCCCCCccccc
Q psy14787         16 NKRCPICRVDIETHLNKDLLQPTWRLPCMHLFHVECVDQW-----LS---SNKRCPICRVDIE   70 (81)
Q Consensus        16 ~~~C~iC~~~~~~~~~~~~~~~~~~~~C~h~fh~~Ci~~~-----~~---~~~~CP~Cr~~~~   70 (81)
                      ...|.||.......    ....+..-.|...||..|+...     ..   ....||.|.....
T Consensus        16 ~~~C~iC~~~~~~~----~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          16 GLACVVCRQMTVAS----GNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CCSCSSSCCCCCCT----TCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             cCCccCCCCccCCC----CCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            45699998643220    0111123358899999997532     11   1346999965443

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.94  E-value=0.22  Score=23.67  Aligned_cols=27  Identities=30%  Similarity=0.722  Sum_probs=18.2

Q ss_pred             CCCCcccHhhHH----H--H---HhCCCCCCCCccc
Q psy14787         42 PCMHLFHVECVD----Q--W---LSSNKRCPICRVD   68 (81)
Q Consensus        42 ~C~h~fh~~Ci~----~--~---~~~~~~CP~Cr~~   68 (81)
                      .|.-.||..|+.    .  .   ......||.|+..
T Consensus        35 ~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          35 RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            588999999982    1  1   1234679999644

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Nedd9 interacting protein with calponin homology, NICAL (MICAL1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.23  E-value=0.46  Score=19.73  Aligned_cols=28  Identities=29%  Similarity=0.583  Sum_probs=18.8

Q ss_pred             CCccccccccccccccccCcCCCCcccC-CCCcccHhh
Q psy14787         15 SNKRCPICRVDIETHLNKDLLQPTWRLP-CMHLFHVEC   51 (81)
Q Consensus        15 ~~~~C~iC~~~~~~~~~~~~~~~~~~~~-C~h~fh~~C   51 (81)
                      ....|.+|...+-.         +-++. =|..||..|
T Consensus         7 ~~~~C~~C~K~VY~---------~Erl~a~g~~yHk~C   35 (36)
T d2co8a2           7 AGDLCALCGEHLYV---------LERLCVNGHFFHRSC   35 (36)
T ss_dssp             SSCBCSSSCCBCCT---------TTBCCBTTBCCBTTT
T ss_pred             CCCcccccCCEEee---------eeEEEecCcEecccc
Confidence            35679999887654         32333 467899877