Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 90
COG0507 696
COG0507, RecD, ATP-dependent exoDNAse (exonuclease
8e-06 pfam05970 364
pfam05970, PIF1, PIF1-like helicase
0.003
>gnl|CDD|223581 COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Back Hide alignment and domain information
Score = 41.7 bits (98), Expect = 8e-06
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 1 MLRRNIDVSMGLVNGSIVYDLECVTTKFEVLPRAYV-----------HREQFSLCLEYAI 49
M RN D ++G+ NG I ++ V E L L YA+
Sbjct: 570 MQLRN-DRALGVFNGDIGV---ILSIVKRRQGDVLVVDFDGREVVVARSELPELELAYAM 625
Query: 50 TIHKCQGLSMNNALMDI--GSSVFSCGQAYVALS 81
TIHK QG + ++ + S + S Y A++
Sbjct: 626 TIHKSQGSEFDRVIVLLPSHSPMLSRELLYTAIT 659
>gnl|CDD|191413 pfam05970, PIF1, PIF1-like helicase
Back Show alignment and domain information
Score = 34.6 bits (80), Expect = 0.003
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 1 MLRRNIDVSMGLVNGS 16
ML RN+D S GL NG+
Sbjct: 342 MLLRNLDQSAGLCNGT 357
This family includes homologues of the PIF1 helicase, which inhibits telomerase activity and is cell cycle regulated. This family includes a large number of largely uncharacterized plant proteins. This family includes a P-loop motif that is involved in nucleotide binding. Length = 364
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
90
COG0507 696
RecD ATP-dependent exoDNAse (exonuclease V), alpha
99.89 TIGR01447 586
recD exodeoxyribonuclease V, alpha subunit. This f
99.88 TIGR01448 720
recD_rel helicase, putative, RecD/TraA family. Thi
99.88 PRK10875 615
recD exonuclease V subunit alpha; Provisional
99.87 TIGR02768 744
TraA_Ti Ti-type conjugative transfer relaxase TraA
99.84 PRK13826 1102
Dtr system oriT relaxase; Provisional
99.8 PRK13889 988
conjugal transfer relaxase TraA; Provisional
99.8 PF02689 818
Herpes_Helicase: Helicase; InterPro: IPR003840 Thi
99.71 PF13538 104
UvrD_C_2: UvrD-like helicase C-terminal domain; PD
99.64 PHA03311 828
helicase-primase subunit BBLF4; Provisional
99.52 PRK13709 1747
conjugal transfer nickase/helicase TraI; Provision
99.29 TIGR02760 1960
TraI_TIGR conjugative transfer relaxase protein Tr
99.28 PRK14712 1623
conjugal transfer nickase/helicase TraI; Provision
99.27 KOG0987|consensus 540
99.15 TIGR02760 1960
TraI_TIGR conjugative transfer relaxase protein Tr
98.77 PF01443 234
Viral_helicase1: Viral (Superfamily 1) RNA helicas
98.7 PRK10919 672
ATP-dependent DNA helicase Rep; Provisional
98.62 TIGR01073 726
pcrA ATP-dependent DNA helicase PcrA. Designed to
98.45 PRK11773 721
uvrD DNA-dependent helicase II; Provisional
98.43 TIGR01075 715
uvrD DNA helicase II. Designed to identify uvrD me
98.43 PF13361 351
UvrD_C: UvrD-like helicase C-terminal domain; PDB:
98.42 PRK11054 684
helD DNA helicase IV; Provisional
98.07 PRK13909 910
putative recombination protein RecB; Provisional
98.04 COG1074 1139
RecB ATP-dependent exoDNAse (exonuclease V) beta s
98.03 TIGR01074 664
rep ATP-dependent DNA helicase Rep. Designed to id
98.01 TIGR02785 1232
addA_Gpos recombination helicase AddA, Firmicutes
97.95 TIGR00609 1087
recB exodeoxyribonuclease V, beta subunit. All pro
97.94 PRK13709 1747
conjugal transfer nickase/helicase TraI; Provision
97.9 PRK10876 1181
recB exonuclease V subunit beta; Provisional
97.85 PF13087 200
AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP
97.58 COG0210 655
UvrD Superfamily I DNA and RNA helicases [DNA repl
97.36 TIGR00376 637
DNA helicase, putative. The gene product may repre
95.89 TIGR02784 1141
addA_alphas double-strand break repair helicase Ad
95.75 COG3973 747
Superfamily I DNA and RNA helicases [General funct
95.68 KOG2108|consensus 853
94.35 PF09848 352
DUF2075: Uncharacterized conserved protein (DUF207
85.37 KOG1803|consensus 649
84.76
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Back Hide alignment and domain information
Probab=99.89 E-value=2.4e-24 Score=163.19 Aligned_cols=89 Identities=29% Similarity=0.359 Sum_probs=71.0
Q ss_pred CEeeecCCCCCeecCCEEeeec------e-EEEE-EecCceeeeecccceeEeeeeeeeecccCCccceEEEEcCC--CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDLE------C-VTTK-FEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGS--SV 70 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~~------~-~~~~-~~~~~~~~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~--~~ 70 (90)
|.++| |+..|++||+++.... . +.+. +++....+..+.+.++++||||||||||||||++|++.+++ ++
T Consensus 570 m~~~N-~~~~~vfNGdiG~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~ayA~TIHKsQGSef~~v~v~l~~~~~~ 648 (696)
T COG0507 570 MQLRN-DRALGVFNGDIGVILSIVKRRQGDVLVVDFDGREVVVARSELPELELAYAMTIHKSQGSEFDRVIVLLPSHSPM 648 (696)
T ss_pred EEeec-ccccceecCccceEEeeccccCceEEEEecCCCEEEEehhhhhhhhhheeeeEecccCCCCCeEEEEcCCCchh
Confidence 67899 7889999999954332 1 2333 33333456666788899999999999999999999999996 28
Q ss_pred CCCCceEEEecccccccccC
Q psy14809 71 FSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 71 ~~~~~~Yva~SRa~~~~~~~ 90 (90)
++++++|||+||||+...++
T Consensus 649 l~r~l~YtAiTRar~~l~l~ 668 (696)
T COG0507 649 LSRELLYTAITRARDRLILY 668 (696)
T ss_pred hhhhHHHHHhhhhheeEEEE
Confidence 99999999999999987653
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit
Back Show alignment and domain information
Probab=99.88 E-value=2.9e-23 Score=155.28 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=69.6
Q ss_pred CEeeecCCCCCeecCCEEeee---ceEEEEEecCc-eeeeecc-cceeEeeeeeeeecccCCccceEEEEcCC---CCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL---ECVTTKFEVLP-RAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGS---SVFS 72 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~---~~~~~~~~~~~-~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~---~~~~ 72 (90)
|+++| |++.||+||+++... +.+.+.|+... ...+... ...+++|||||||||||+||++|++.++. ++++
T Consensus 472 m~t~N-d~~~gl~NGdiG~i~~~~~~~~v~f~~~~g~~~~~~~~l~~~~~ayA~TvHKSQGsef~~Vi~~l~~~~~~~l~ 550 (586)
T TIGR01447 472 MVTEN-DYTLGLFNGDIGVLLRDPDGLTVWFHFADGSKAVLPSRLPNYETAFAMTVHKSQGSEFDHVILILPNGNSPVLT 550 (586)
T ss_pred EEeec-CcccCcCCCCeEEEEEeCCcEEEEEEcCCCeEEechHHcCccceEEEEEeeHhcCCcCCeEEEECCCCCCcccc
Confidence 67899 999999999996543 23566675422 1333333 34589999999999999999999999876 4789
Q ss_pred CCceEEEecccccccccC
Q psy14809 73 CGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~~~~ 90 (90)
+.++|||+||||+...||
T Consensus 551 r~llYTaiTRAk~~l~i~ 568 (586)
T TIGR01447 551 RELLYTGITRAKDQLSVW 568 (586)
T ss_pred cceeEEEeeehhCeEEEE
Confidence 999999999999877653
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
>TIGR01448 recD_rel helicase, putative, RecD/TraA family
Back Show alignment and domain information
Probab=99.88 E-value=1.3e-23 Score=160.17 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=68.9
Q ss_pred CEeeecCCCCCeecCCEEeee--c--------eEEEEEecCceeeeecccceeEeeeeeeeecccCCccceEEEEcCCC-
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL--E--------CVTTKFEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSS- 69 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~--~--------~~~~~~~~~~~~~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~- 69 (90)
|.++| |++.|++||+++... . .+.+.|++....+.......+++|||+||||||||||++|++.++..
T Consensus 594 m~~~N-~~~~~v~NGdiG~I~~i~~~~~~~~~~i~v~f~g~~v~~~~~~~~~l~lAYAiTvHKsQGSe~~~Vii~l~~~~ 672 (720)
T TIGR01448 594 MQTKN-DYNNEIFNGDLGMIVKIEGAKQGKKDQVVVDFDGNEVELTRAELFNLTLAYATSIHKSQGSEFPTVILPIHTAH 672 (720)
T ss_pred EEeee-cchhccccCCeeEEEeccccccCCCceEEEEECCeEEEEcHHHhhhhhhhheeeehhccCccCCEEEEECCccc
Confidence 67899 899999999995432 1 25677765333333334446899999999999999999999987653
Q ss_pred --CCCCCceEEEeccccccccc
Q psy14809 70 --VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 70 --~~~~~~~Yva~SRa~~~~~~ 89 (90)
+++++++|||+||||+...+
T Consensus 673 ~~~l~r~llYTAiTRAk~~l~l 694 (720)
T TIGR01448 673 MRMLYRNLLYTALTRAKKRVIL 694 (720)
T ss_pred chhhhhchheeeeeeeceEEEE
Confidence 78999999999999987654
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
>PRK10875 recD exonuclease V subunit alpha; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=5.7e-23 Score=154.35 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=69.1
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEec--Cceeeeecc-cceeEeeeeeeeecccCCccceEEEEcCCC---C
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEV--LPRAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGSS---V 70 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~--~~~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~~---~ 70 (90)
|+++| |++.||+||+++... +.+.+.|+. +....+... ...+++|||||||||||+||++|++.++.. +
T Consensus 488 m~t~N-d~~~gl~NGdiG~v~~~~~~~l~v~f~~~~g~~~~~~~~~l~~~~~ayA~TVHKSQGsEf~~Vilvlp~~~~~~ 566 (615)
T PRK10875 488 MIARN-DSALGLFNGDIGIALDRGQGELRVWFQLPDGNIKSVQPSRLPEHETAWAMTVHKSQGSEFDHTALVLPNQFTPV 566 (615)
T ss_pred EEeec-CcccCcccCceEEEeecCCCeEEEEEECCCCcEEEechHhccccceEEEEehhhhcCCCCCeEEEECCCccchh
Confidence 68899 999999999995543 235566643 333333333 345899999999999999999999988864 6
Q ss_pred CCCCceEEEecccccccccC
Q psy14809 71 FSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 71 ~~~~~~Yva~SRa~~~~~~~ 90 (90)
++++++|||+||||+...++
T Consensus 567 l~R~LlYTaiTRAk~~l~l~ 586 (615)
T PRK10875 567 VTRELVYTAITRARRRLSLY 586 (615)
T ss_pred hhhhhHHhhhhhhhceEEEE
Confidence 89999999999999876653
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA
Back Show alignment and domain information
Probab=99.84 E-value=1.6e-21 Score=149.16 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=72.4
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCceeeeecc-cceeEeeeeeeeecccCCccceEEEEcCCCCCCCCc
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLPRAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQ 75 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~~~~~~~~ 75 (90)
|+++| |+..|++||+++... ..+.+.++.+..+.+... ..++++|||+|+|||||+|+++|+++ ...++++++
T Consensus 615 ~~~~N-~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~~~l~laYA~TvHKsQGst~~~viv~-~~~~l~r~l 692 (744)
T TIGR02768 615 VFLEN-NRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVL-ASKSMDRHL 692 (744)
T ss_pred EEEec-ccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHhCccCceEEeccccccCCccCcEEEe-cCCccccch
Confidence 67889 899999999995432 357788887666666544 44799999999999999999999998 457899999
Q ss_pred eEEEecccccccccC
Q psy14809 76 AYVALSSQNTYWRTF 90 (90)
Q Consensus 76 ~Yva~SRa~~~~~~~ 90 (90)
+|||+||+|+...+|
T Consensus 693 lYvAiTRar~~~~l~ 707 (744)
T TIGR02768 693 AYVAMTRHRESVQLY 707 (744)
T ss_pred hhhhhhcccceeEEE
Confidence 999999999877664
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
>PRK13826 Dtr system oriT relaxase; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=3.1e-20 Score=145.79 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=69.0
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCc---eeeeecccc-eeEeeeeeeeecccCCccceEEEEcCCCCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLP---RAYVHREQF-SLCLEYAITIHKCQGLSMNNALMDIGSSVFS 72 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~---~~~~~r~~~-p~~~aya~TihKsQG~t~~~v~v~l~~~~~~ 72 (90)
|+++| |++.|++||+++... +.+.+.++.+. .+.+....+ .+++|||+|||||||+|+++|++..+ ..++
T Consensus 641 ~f~rN-d~~lgV~NGd~GtV~~i~~~~i~v~~d~g~~~r~V~~~~~~~~~ldhaYA~TVHKSQGsT~d~V~vl~s-~~ld 718 (1102)
T PRK13826 641 VFLKN-EGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLAS-LSLD 718 (1102)
T ss_pred EEeee-cCccCccCCCeEEEEEecCCeEEEEEcCCCCceEEEechhhccchhheeeeeeecccccccceEEEecc-cccc
Confidence 57899 899999999995432 35667775542 333433333 48999999999999999999998765 6789
Q ss_pred CCceEEEecccccccccC
Q psy14809 73 CGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~~~~ 90 (90)
++++|||+||+|....+|
T Consensus 719 R~llYVA~TRaR~~~~ly 736 (1102)
T PRK13826 719 RHLTYVAMTRHREDLQLY 736 (1102)
T ss_pred cchhHHhhccccceEEEE
Confidence 999999999999987765
>PRK13889 conjugal transfer relaxase TraA; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=1.9e-20 Score=146.09 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=71.0
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCceeeeecc-cceeEeeeeeeeecccCCccceEEEEcCCCCCCCCc
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLPRAYVHRE-QFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSCGQ 75 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~~~~~~r~-~~p~~~aya~TihKsQG~t~~~v~v~l~~~~~~~~~ 75 (90)
|+++| |+..|++||++.... ..+.++++.+..+.+... ...+++|||+|||||||+|+++|++... +.+++.+
T Consensus 608 m~~rN-d~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~~~ldlaYA~TIHKSQGsT~d~V~vl~~-~~~~r~l 685 (988)
T PRK13889 608 MFLQN-ERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDYDRIDHGYAATIHKAQGMTVDRTHVLAT-PGMDAHS 685 (988)
T ss_pred EEeec-CCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHcCcccchhhhhhHHhcCCCCCeEEEecc-cccccch
Confidence 67899 899999999995432 357788876655555443 3468999999999999999999988764 5688999
Q ss_pred eEEEecccccccccC
Q psy14809 76 AYVALSSQNTYWRTF 90 (90)
Q Consensus 76 ~Yva~SRa~~~~~~~ 90 (90)
+|||+||+|+...+|
T Consensus 686 ~YVAiTRar~~v~l~ 700 (988)
T PRK13889 686 SYVALSRHRDGVDLH 700 (988)
T ss_pred hHHhhhhhhheEEEE
Confidence 999999999887664
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms
Back Show alignment and domain information
Probab=99.71 E-value=1.4e-17 Score=126.22 Aligned_cols=55 Identities=42% Similarity=0.630 Sum_probs=51.5
Q ss_pred eeecccceeEeeeeeeeecccCCccceEEEEcCCC-CCCCCceEEEeccccccccc
Q psy14809 35 YVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSS-VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 35 ~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~-~~~~~~~Yva~SRa~~~~~~ 89 (90)
...+.|+|+..+||||||||||+++++|.++++++ .|.++++|||+||+++.+++
T Consensus 729 ~~t~~qfpi~~~~AmTIhKSQG~SL~kV~i~l~~~~~F~~gq~YVAlSRvts~~~L 784 (818)
T PF02689_consen 729 LCTRVQFPISSAFAMTIHKSQGQSLDKVAIDLGKPKVFSHGQLYVALSRVTSLEGL 784 (818)
T ss_pred EeeecCCcceeeEEEEEeHhhccccceEEEECCCCcccCCCceEEEEEeecccccc
Confidence 45678999999999999999999999999999988 99999999999999998875
; GO: 0004386 helicase activity, 0005524 ATP binding
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A
Back Show alignment and domain information
Probab=99.64 E-value=3e-18 Score=102.23 Aligned_cols=88 Identities=24% Similarity=0.304 Sum_probs=53.3
Q ss_pred CEeeecCCCCCeecCCEEee--eceEEEEEecCceeee--ecccceeEeeeeeeeecccCCccceEEEEcCCCC----CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--LECVTTKFEVLPRAYV--HREQFSLCLEYAITIHKCQGLSMNNALMDIGSSV----FS 72 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~~~~~~~~~~~~~~~~--~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~~----~~ 72 (90)
++++| +...+++||++... +............+.. ........++||+|+|||||+||+.|++..+... ..
T Consensus 8 v~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tih~akGle~d~V~v~~~~~~~~~~~~ 86 (104)
T PF13538_consen 8 VITRN-DSEQAVFNGDLGKIEDIYEEEEKDDDKKRVRVDDDENSYQVSHAYAMTIHKAKGLEFDAVIVVDPDSSNFDELS 86 (104)
T ss_dssp EE-CT-BTTTCECCCCHHHHHHHHHCCH--TTCCEEEECCCCCCCTCCCCSEEETGGCTT--EEEEEEEEGGGGSGCGCH
T ss_pred EEEee-CCcCCeecCceEEEecccccccccccccEEEecccccccccCcEEEEEhHHhcCccccEEEEEcCCcccCCchh
Confidence 35677 77889999998211 0000000011111111 1122233489999999999999999999877554 35
Q ss_pred CCceEEEeccccccccc
Q psy14809 73 CGQAYVALSSQNTYWRT 89 (90)
Q Consensus 73 ~~~~Yva~SRa~~~~~~ 89 (90)
+.++|||+|||++...|
T Consensus 87 ~~~lYva~TRA~~~L~i 103 (104)
T PF13538_consen 87 RRLLYVAITRAKHELYI 103 (104)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred hccEEeeHhHhhhhhCC
Confidence 56799999999987654
>PHA03311 helicase-primase subunit BBLF4; Provisional
Back Show alignment and domain information
Probab=99.52 E-value=6.1e-15 Score=112.09 Aligned_cols=50 Identities=26% Similarity=0.395 Sum_probs=45.4
Q ss_pred cceeEeeeeeeeecccCCccceEEEEcCCC-CCCCCceEEEeccccccccc
Q psy14809 40 QFSLCLEYAITIHKCQGLSMNNALMDIGSS-VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 40 ~~p~~~aya~TihKsQG~t~~~v~v~l~~~-~~~~~~~Yva~SRa~~~~~~ 89 (90)
..-+..+||||||||||+++++|.++++.+ .|.++++|||+||+++..++
T Consensus 744 DYGi~~~~AmTI~KSQG~sL~~V~i~f~~~k~~~~gq~YVAlSR~~s~~~L 794 (828)
T PHA03311 744 DYGISSKLAMTIAKSQGLSLDKVAICFGNHKNLKLSHVYVAMSRVTSSNFL 794 (828)
T ss_pred ccccchhheeeehHhhCCccceEEEECCCccccccCcEEEEEEeccCcccc
Confidence 345788999999999999999999999887 99999999999999998764
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Back Show alignment and domain information
Probab=99.29 E-value=1.4e-12 Score=106.64 Aligned_cols=88 Identities=26% Similarity=0.268 Sum_probs=62.6
Q ss_pred CEeeecCCCCCeecCCEEee--ec--eEEEEEecCceeeeec----ccceeEeeeeeeeecccCCccceEEEEcC-----
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--LE--CVTTKFEVLPRAYVHR----EQFSLCLEYAITIHKCQGLSMNNALMDIG----- 67 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~~--~~~~~~~~~~~~~~~r----~~~p~~~aya~TihKsQG~t~~~v~v~l~----- 67 (90)
++++| |...|+.||++... +. .+.+....+. ..+.. ...-+++|||.|+|+|||.|.++|++..+
T Consensus 1342 r~Trn-Dk~~G~~Ng~~~tV~~I~~~~I~l~~~~~~-~~l~~~~~~~~~hlD~gYA~T~h~AQG~T~~~vi~~~~~~~~~ 1419 (1747)
T PRK13709 1342 RFTKS-DRERGYVANSVWTVTAVSGDSVTLSDGQQT-RVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGR 1419 (1747)
T ss_pred EEccc-CcccccccCCEEEEEEEcCCeEEEEcCCce-EEecccchhhhhhhhhhhhhhhhhhcccccceEEEEecccccc
Confidence 36788 88999999999332 22 2333322222 22211 23358999999999999999999998654
Q ss_pred CCCCCCCceEEEecccccccccC
Q psy14809 68 SSVFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 68 ~~~~~~~~~Yva~SRa~~~~~~~ 90 (90)
..+++...+||++||+|....||
T Consensus 1420 ~~l~~~~~fYVaiSRar~~l~Iy 1442 (1747)
T PRK13709 1420 KQMAGFESAYVALSRMKQHVQVY 1442 (1747)
T ss_pred ccccchhhhhhcccccccceEEE
Confidence 23678889999999999987765
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI
Back Show alignment and domain information
Probab=99.28 E-value=1.1e-12 Score=108.43 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=66.7
Q ss_pred CEeeecCCCCCeecCCEEee--e--ceEEEEEecCceeeeec---ccceeEeeeeeeeecccCCccceEEEEcCCC--CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--L--ECVTTKFEVLPRAYVHR---EQFSLCLEYAITIHKCQGLSMNNALMDIGSS--VF 71 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~--~~~~~~~~~~~~~~~~r---~~~p~~~aya~TihKsQG~t~~~v~v~l~~~--~~ 71 (90)
++++| |.+.|+.||++... + +.+.+..+.+....+.. ...-+++|||.|.|+|||.|.++|++..+.. +.
T Consensus 1396 ~~t~~-d~~~g~~n~~~~~V~~v~~~~~~~~~~~~~~~~l~~~~~~~~h~d~~YA~T~h~aQG~T~~~vi~~~~s~~~l~ 1474 (1960)
T TIGR02760 1396 RLRAT-DKNRGIKANEVYTVTQVVNGLSVQLSKVKNSLSLKPIQAKDKHWDYAYTRTADSAQGATYTFVIALIKGRLALT 1474 (1960)
T ss_pred EEeec-CcccccccCCeEEEEEEcCCcEEEEcCCCceEEecCchhhhhccchhhhhhhhhhcccccceEEEEecchhhhh
Confidence 36778 99999999999332 2 23445545444444432 2335899999999999999999999887653 56
Q ss_pred CCCceEEEecccccccccC
Q psy14809 72 SCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 72 ~~~~~Yva~SRa~~~~~~~ 90 (90)
+...+||++||+|....||
T Consensus 1475 ~~~~~YVaiSRar~~~~iy 1493 (1960)
T TIGR02760 1475 NYRSAYIDLTRASHHVELY 1493 (1960)
T ss_pred hhhhHhhhhhhcccceEEE
Confidence 7888999999999987765
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Back Show alignment and domain information
Probab=99.27 E-value=3.3e-12 Score=103.73 Aligned_cols=87 Identities=29% Similarity=0.312 Sum_probs=62.0
Q ss_pred CEeeecCCCCCeecCCEEe--eec--eEEEEEecCceeee-----ecccceeEeeeeeeeecccCCccceEEEEcCC---
Q psy14809 1 MLRRNIDVSMGLVNGSIVY--DLE--CVTTKFEVLPRAYV-----HREQFSLCLEYAITIHKCQGLSMNNALMDIGS--- 68 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~--~~~--~~~~~~~~~~~~~~-----~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~--- 68 (90)
++++| |...|+.||++.. .+. .+.+. .+..... .....-+++|||.|.|.|||.|.++|+...+.
T Consensus 1213 r~Trn-D~~~G~~Ng~~~tV~~i~~~~i~l~--~g~~~~~i~~~~~~~~~hlD~aYA~Tah~AQG~T~~~vI~~~~s~~~ 1289 (1623)
T PRK14712 1213 RFTKS-DRERGYVANSVWTVTAVSGDSVTLS--DGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGN 1289 (1623)
T ss_pred EEccC-CcccccccCceEEEEEEcCCeEEEe--cCceeEeecCcccchhhhhhhhhhhhhhhccCCccceEEEecccccc
Confidence 45778 8999999999933 222 33333 3332211 11234579999999999999999999887543
Q ss_pred -C-CCCCCceEEEecccccccccC
Q psy14809 69 -S-VFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 69 -~-~~~~~~~Yva~SRa~~~~~~~ 90 (90)
. +.+...+||++||+|....||
T Consensus 1290 ~~~lt~~rsfYVaiSRAr~~v~IY 1313 (1623)
T PRK14712 1290 RKLMAGFESAYVALSRMKQHVQVY 1313 (1623)
T ss_pred hhhcccchhheeeeeeccceEEEE
Confidence 1 347888999999999987775
>KOG0987|consensus
Back Show alignment and domain information
Probab=99.15 E-value=5.1e-12 Score=94.41 Aligned_cols=67 Identities=31% Similarity=0.396 Sum_probs=50.2
Q ss_pred CEeeecCCCCCeecCCEEee-----------------------eceEEEEE-ecCceeeeecccceeEeeeeeeeecccC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD-----------------------LECVTTKF-EVLPRAYVHREQFSLCLEYAITIHKCQG 56 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~-----------------------~~~~~~~~-~~~~~~~~~r~~~p~~~aya~TihKsQG 56 (90)
|++||+++..|+|||++... +.++.... +....+...|+|||+..+||||||||||
T Consensus 449 mll~nl~~~~gl~~~trl~it~l~~~~~~~~~~~g~r~~~~v~i~r~~~~~~~~~~~~~~~r~qfp~~~~~a~~i~ksqg 528 (540)
T KOG0987|consen 449 MLLRNLDPKGGLCNGTRLQITLLGVFLLEARIVTGSRAGKFVLIPRFDISPSDTNLPFRMRRRQFPLSLAFAMTINKSQG 528 (540)
T ss_pred HhhhccchhhhhhccchhhhhcccCcccceeeeecccccceEEecccccCccccCcccccccccccceeeeecccChhhh
Confidence 78999999999999999110 00111111 1123455678999999999999999999
Q ss_pred CccceEEEEcC
Q psy14809 57 LSMNNALMDIG 67 (90)
Q Consensus 57 ~t~~~v~v~l~ 67 (90)
+++.+|.++++
T Consensus 529 qsl~~v~~~l~ 539 (540)
T KOG0987|consen 529 QSLEKVGLYLP 539 (540)
T ss_pred hhHHhhcCcCC
Confidence 99999999886
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI
Back Show alignment and domain information
Probab=98.77 E-value=2.6e-09 Score=88.94 Aligned_cols=87 Identities=16% Similarity=0.040 Sum_probs=62.3
Q ss_pred CEeeecCCCCCeecCCEEee--e--ceEEEEEecCceeeeec---ccceeEeeeeeeeecccCCccceEEEEcCCCCCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYD--L--ECVTTKFEVLPRAYVHR---EQFSLCLEYAITIHKCQGLSMNNALMDIGSSVFSC 73 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~--~--~~~~~~~~~~~~~~~~r---~~~p~~~aya~TihKsQG~t~~~v~v~l~~~~~~~ 73 (90)
|+++| +...||-||++... + ..+.+..+.+....+.. ...+++++||.|.|+|||.|.+.++.. .... ..
T Consensus 754 ~~trn-~~~~gl~ng~~~tV~~i~~~~i~l~~~~g~~~~L~~~~~~~~~ldh~Ya~T~h~aQG~T~~~~~~~-~~~~-~~ 830 (1960)
T TIGR02760 754 QVTGN-HFHSRVRNGELLTVSSINNEGITLITEDGQTLHLPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGV-KQYA-LS 830 (1960)
T ss_pred EEccC-CcccCccCCCEEEEEEEcCCeEEEEeCCCceEEccCCCcccccccccccCCCcccCCCcceEEEEe-cchh-hh
Confidence 67889 78999999999432 2 23555555454444433 356899999999999999999866554 2223 34
Q ss_pred CceEEEecccccccccC
Q psy14809 74 GQAYVALSSQNTYWRTF 90 (90)
Q Consensus 74 ~~~Yva~SRa~~~~~~~ 90 (90)
..+|+++||+++...||
T Consensus 831 ~~~~~~lsRa~~~l~Iy 847 (1960)
T TIGR02760 831 KALLNSLNRSASRVDLF 847 (1960)
T ss_pred HHHHHHHhhCcceeEEE
Confidence 45799999999988776
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases
Back Show alignment and domain information
Probab=98.70 E-value=8.5e-09 Score=68.61 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=36.2
Q ss_pred eeeeeecccCCccceEEEEcCCC----CC--CCCceEEEeccccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIGSS----VF--SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~~~----~~--~~~~~Yva~SRa~~~~~~ 89 (90)
-++|+|.|||+|+++|.+++... .+ ++..+|||+||+++...+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~~~~~~~~~~~~~~~VALTR~~~~l~i 232 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSDTDNELYSESRNHLYVALTRHTKSLVI 232 (234)
T ss_pred ceechHHcceEEeCCEEEEECCCcccccccCCcccEEEEccccccEEEE
Confidence 38999999999999999987754 23 488999999999987654
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Back Show alignment and domain information
Probab=98.62 E-value=6e-09 Score=79.69 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=33.1
Q ss_pred eeeeeecccCCccceEEEE-cCCCCCC-------------CCceEEEecccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVFS-------------CGQAYVALSSQNTYWR 88 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~~-------------~~~~Yva~SRa~~~~~ 88 (90)
--||||+|+|+||+.|+|. +....|. +.++|||+||||+..-
T Consensus 553 ~L~TiH~sKGLEf~~Vfi~gl~eg~~P~~~~~~~~~leEERRLfYVA~TRAk~~L~ 608 (672)
T PRK10919 553 QLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDEDNIDEERRLAYVGITRAQKELT 608 (672)
T ss_pred EEEeeecccCcCCCEEEEeCCcCCCCCCcccCCcccHHHHHHHHHHhHhhhhhheE
Confidence 4589999999999999875 3333443 6789999999997653
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA
Back Show alignment and domain information
Probab=98.45 E-value=4.3e-08 Score=75.40 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=31.0
Q ss_pred eeeeecccCCccceEEEE-cCCCCC--------------CCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMD-IGSSVF--------------SCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~-l~~~~~--------------~~~~~Yva~SRa~~~~ 87 (90)
-||||+|+|+||+.|+|. +....| .+.++|||+||||+..
T Consensus 552 LmTiH~sKGLEf~vVfv~gl~eg~~P~~~~~~~~~~~eEERRL~YVAiTRAk~~L 606 (726)
T TIGR01073 552 LMTLHAAKGLEFPVVFLIGMEEGVFPHSRSLMDEKELEEERRLAYVGITRAEEEL 606 (726)
T ss_pred EEeeeeccCccCCEEEEeCCcCCCCCcccccCCchhHHHHHhhHHhhhhhhhheE
Confidence 499999999999999974 322222 3457999999999764
Designed to identify pcrA members of the uvrD/rep subfamily.
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Back Show alignment and domain information
Probab=98.43 E-value=5.1e-08 Score=75.07 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=31.8
Q ss_pred eeeeeecccCCccceEEEE-cCCCCC--------------CCCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVF--------------SCGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~--------------~~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|+||+.|+|. +....| .+.++|||+||||+..
T Consensus 555 ~LmTiH~AKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~leEERRL~YVAiTRAk~~L 610 (721)
T PRK11773 555 QLMTLHSAKGLEFPLVFIVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKL 610 (721)
T ss_pred EEEechhccCCcCCEEEEeCCccCCCCCccccccchhhHHHHhHHHhhhhhhhhee
Confidence 3599999999999999975 322333 2568999999999754
>TIGR01075 uvrD DNA helicase II
Back Show alignment and domain information
Probab=98.43 E-value=7.2e-08 Score=74.13 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=31.1
Q ss_pred eeeeecccCCccceEEEEc-CCCCCC--------------CCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDI-GSSVFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l-~~~~~~--------------~~~~Yva~SRa~~~~ 87 (90)
-||+|+|+|+||+.|+|.- ....|. +.++|||+||||+..
T Consensus 551 lmTiH~sKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~leEERRL~YVAiTRAk~~L 605 (715)
T TIGR01075 551 LMTLHSAKGLEFPLVFLVGMEEGMFPSQMSLDEGGRLEEERRLAYVGITRAMQKL 605 (715)
T ss_pred EEEeeeccCCcCCEEEEeCCcCCCCCCccccCccccHHHHHhHHhhhhhhhhhhe
Confidence 5899999999999999753 222332 357999999999764
Designed to identify uvrD members of the uvrD/rep subfamily.
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A
Back Show alignment and domain information
Probab=98.42 E-value=3.7e-08 Score=67.98 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred eeeeeecccCCccceEEEEcC-CCCCC--------------CCceEEEecccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIG-SSVFS--------------CGQAYVALSSQNTYWR 88 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~-~~~~~--------------~~~~Yva~SRa~~~~~ 88 (90)
--||+|||+|.+|+.|+|.-. ...|. +.++|||+||||+..-
T Consensus 289 ~i~TiH~sKGLEf~~V~v~~~~~~~~p~~~~~~~~~~~~Ee~rl~YVA~TRAk~~L~ 345 (351)
T PF13361_consen 289 QIMTIHKSKGLEFDIVFVPGLNEGTFPSYRSIEDRQELEEERRLFYVAMTRAKERLY 345 (351)
T ss_dssp EEEECGGGTT--EEEEEEETTBTBTTTCHHHHHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEeeheeccccCCCeEEEecccCCcChHHHHHhhHhhhHHHHhHheEecchhhceEE
Confidence 459999999999999998633 22332 3368999999998643
>PRK11054 helD DNA helicase IV; Provisional
Back Show alignment and domain information
Probab=98.07 E-value=4.1e-07 Score=69.99 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=31.8
Q ss_pred eeeeecccCCccceEEEEcCC--------C---------------CC----CCCceEEEeccccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGS--------S---------------VF----SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~--------~---------------~~----~~~~~Yva~SRa~~~~~~ 89 (90)
.+|+|+|+|+|+|.|+|.-.. . .+ .+.++|||+||||+..-+
T Consensus 591 ~~T~h~sKGLEfD~ViI~g~~~g~~gfP~~~~~~~~~~~~~~~~~~~~~~eERRLlYVAlTRAr~~l~i 659 (684)
T PRK11054 591 FMTIHASKGQQADYVIILGLQEGQDGFPAPARESIMEEALLPPPEDFPDAEERRLLYVALTRAKHRVWL 659 (684)
T ss_pred EEehhhhcCCcCCEEEEecCCcCcccCCcccccchhhhcccccccccccHHHHHHHHHHhhhhhcEEEE
Confidence 589999999999999985221 1 01 366899999999986543
>PRK13909 putative recombination protein RecB; Provisional
Back Show alignment and domain information
Probab=98.04 E-value=2.7e-06 Score=67.21 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=17.0
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|.+|+.|++.
T Consensus 609 ~imTIHkSKGLEfpvVil~ 627 (910)
T PRK13909 609 QIMTVHKSKGLEFEHVIVC 627 (910)
T ss_pred EEEEeeccCCCCCcEEEEc
Confidence 3599999999999999984
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=98.03 E-value=6e-07 Score=72.25 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.7
Q ss_pred eeeeeecccCCccceEEEEc
Q psy14809 47 YAITIHKCQGLSMNNALMDI 66 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l 66 (90)
=-||||||+|+|++-|++.-
T Consensus 745 rImTIHkSKGLEfPiVflp~ 764 (1139)
T COG1074 745 RIMTIHKSKGLEFPIVFLPF 764 (1139)
T ss_pred EEEEEeccCCCCCCEEEecC
Confidence 35999999999999999864
>TIGR01074 rep ATP-dependent DNA helicase Rep
Back Show alignment and domain information
Probab=98.01 E-value=1.1e-06 Score=66.92 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.2
Q ss_pred eeeeeecccCCccceEEEE-cCCCCC-------------CCCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVF-------------SCGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~-------------~~~~~Yva~SRa~~~~ 87 (90)
=-||+|+|+|.+|+.|+|. +....| .+.++|||+||||+..
T Consensus 553 ~l~TiH~sKGLEf~~Vfv~gl~eg~~P~~~~~~~~~~~EErRlfYVA~TRAk~~L 607 (664)
T TIGR01074 553 QLMTLHASKGLEFPYVFIVGMEEGILPHQSSIEEDNVEEERRLAYVGITRAQKEL 607 (664)
T ss_pred EEEeeecccCccCCeEEEeCCcCCCCCCccccccchHHHHHHHHHHhhhhhhhee
Confidence 3589999999999999975 322233 2446899999999754
Designed to identify rep members of the uvrD/rep subfamily.
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type
Back Show alignment and domain information
Probab=97.95 E-value=3.5e-06 Score=68.38 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|++|+.|++.
T Consensus 784 ~IMTIHkSKGLEFPvVfl~ 802 (1232)
T TIGR02785 784 RLMTIHKSKGLEFPVVFVL 802 (1232)
T ss_pred EEEeeecccCCCCCEEEEe
Confidence 4599999999999999985
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
>TIGR00609 recB exodeoxyribonuclease V, beta subunit
Back Show alignment and domain information
Probab=97.94 E-value=1.8e-06 Score=69.30 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.6
Q ss_pred eeeeeeecccCCccceEEEE
Q psy14809 46 EYAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~ 65 (90)
--.||||||+|+||+-|++.
T Consensus 653 V~ImTIHkSKGLEfPvVflp 672 (1087)
T TIGR00609 653 VKIVTIHKSKGLEYPIVFLP 672 (1087)
T ss_pred EEEEEEEccCCCCCCEEEEe
Confidence 34699999999999999974
All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Back Show alignment and domain information
Probab=97.90 E-value=8.2e-06 Score=67.97 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=56.3
Q ss_pred CEeeecCCCCCeecCCEEe--ee--ceEEEEEecC-ceeeeeccc-----ceeEeeeeeeeecccCCccceEEEEcC--C
Q psy14809 1 MLRRNIDVSMGLVNGSIVY--DL--ECVTTKFEVL-PRAYVHREQ-----FSLCLEYAITIHKCQGLSMNNALMDIG--S 68 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~--~~--~~~~~~~~~~-~~~~~~r~~-----~p~~~aya~TihKsQG~t~~~v~v~l~--~ 68 (90)
++++| |...||.||++.. .+ +.+++..+.. ..+.+.... .+++++||.|.|++ +.+++.+..+ +
T Consensus 718 r~T~n-d~~~~l~Ngd~~tV~~i~~~~i~l~~~~~gk~~~L~~~~~~~~~~~ldhaYa~T~~~a---t~~~~~v~~~~~~ 793 (1747)
T PRK13709 718 RVLGK-IPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHS---VSDSATVFASVTQ 793 (1747)
T ss_pred EEccC-CcccCccCCCEEEEEEecCCeEEEEECCCceEEEeCCcccccccCceeeeeecccccc---cCceeEEEEecCc
Confidence 36788 8999999999943 23 2455554333 223333222 46999999999998 4456554433 3
Q ss_pred CCCCCCceEEEecccccccccC
Q psy14809 69 SVFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 69 ~~~~~~~~Yva~SRa~~~~~~~ 90 (90)
..++... ||++||++....||
T Consensus 794 ~~~s~~~-~v~ltrs~~~l~Iy 814 (1747)
T PRK13709 794 RAMDNAT-LNGLARSGRDVRLY 814 (1747)
T ss_pred hhhhHHH-HHHHhhccceEEEE
Confidence 3555554 99999999887776
>PRK10876 recB exonuclease V subunit beta; Provisional
Back Show alignment and domain information
Probab=97.85 E-value=3.4e-06 Score=68.27 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.9
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|.||+.|++.
T Consensus 737 ~ImTIH~SKGLEfPvVflp 755 (1181)
T PRK10876 737 QIVTIHKSKGLEYPLVWLP 755 (1181)
T ss_pred EEEEEeccCCcCCCEEEec
Confidence 3599999999999999974
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A
Back Show alignment and domain information
Probab=97.58 E-value=3.7e-06 Score=54.76 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred eeeeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
-.+.|+|++||+|.|-|++.+... ..+...+-||+||||+..=
T Consensus 144 ~~v~Tvd~~QG~E~diVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk~~li 194 (200)
T PF13087_consen 144 IKVSTVDSFQGQEADIVIVSLVRTNSSSNIGFLNDPNRLNVALSRAKSGLI 194 (200)
T ss_dssp SEEEEHHHHTT--EEEEEEEE---STTS-SGGGC-HHHHHHHHTSEEEEEE
T ss_pred EEEecHHHhccccceEEEEEeccCCccccccccCCcCeeeeeHHHHhcCEE
Confidence 467999999999999999876533 2245568999999998653
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=97.36 E-value=2.8e-05 Score=59.25 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=29.7
Q ss_pred eeeeecccCCccceEEEEc-CCCCC---------------CCCceEEEecccccc
Q psy14809 48 AITIHKCQGLSMNNALMDI-GSSVF---------------SCGQAYVALSSQNTY 86 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l-~~~~~---------------~~~~~Yva~SRa~~~ 86 (90)
-||+|.|+|++|+.|++.- ....| .+.++|||+|||+..
T Consensus 557 lmT~H~aKGlEf~~Vfl~g~~eg~~P~~~~~~~~~~~~eEERRL~YVaiTRA~~~ 611 (655)
T COG0210 557 LMTIHAAKGLEFPYVFLVGLEEGLFPADRSLDEGDEPLEEERRLLYVAITRAKKK 611 (655)
T ss_pred EEechhccCCCCCeEEEecccCCCCCChhhcccCCCCccHHHHHHHHHHHHHHHh
Confidence 4999999999999999853 22222 234689999999864
>TIGR00376 DNA helicase, putative
Back Show alignment and domain information
Probab=95.89 E-value=0.0046 Score=47.66 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=31.4
Q ss_pred eeeeeeecccCCccceEEEEcC--CC----CC--CCCceEEEeccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIG--SS----VF--SCGQAYVALSSQNTYW 87 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~--~~----~~--~~~~~Yva~SRa~~~~ 87 (90)
-..-|+|+.||.+.|-|++.+- .. -| +..-++||+||||...
T Consensus 554 i~v~TVd~fQG~E~DvIi~S~vrsn~~~~~gFl~d~rRLNVAlTRAK~~L 603 (637)
T TIGR00376 554 IEVSSVDGFQGREKEVIIISFVRSNRKGEVGFLKDLRRLNVALTRARRKL 603 (637)
T ss_pred eEEccccccCCccccEEEEEEEecCCCCCcccccCcceeeeehhhhhCce
Confidence 3568999999999998886432 11 22 4556999999999864
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type
Back Show alignment and domain information
Probab=95.75 E-value=0.0055 Score=49.83 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=17.1
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|+||+.|++.
T Consensus 777 ~ImTIH~SKGLEfpvV~l~ 795 (1141)
T TIGR02784 777 RVMTVHGAKGLEAPVVFLV 795 (1141)
T ss_pred EEEeccccCCCCCCEEEEe
Confidence 4599999999999999984
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Back Show alignment and domain information
Probab=95.68 E-value=0.0015 Score=50.20 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=33.7
Q ss_pred eeeeecccCCccceEEEEcCCC----CCCCCceEEEecccccccccC
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS----VFSCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~----~~~~~~~Yva~SRa~~~~~~~ 90 (90)
.+-++-++|.+||.|+++-++. -.....+|||+|||.+..-+|
T Consensus 697 vipvy~aKGlEFD~viv~d~s~~e~te~~~r~LYva~TRAlh~l~if 743 (747)
T COG3973 697 VIPVYDAKGLEFDHVIVVDPSIVEETEQDLRDLYVAVTRALHSLYIF 743 (747)
T ss_pred EEEeeecccceeeeEEEecchhhcccccchhhHHHHHHHHHHHHHHh
Confidence 3556678999999999988753 346667999999998876554
>KOG2108|consensus
Back Show alignment and domain information
Probab=94.35 E-value=0.023 Score=45.01 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=28.5
Q ss_pred eeeecccCCccceEEEEcCCC-CC--------------------CCCceEEEeccccc
Q psy14809 49 ITIHKCQGLSMNNALMDIGSS-VF--------------------SCGQAYVALSSQNT 85 (90)
Q Consensus 49 ~TihKsQG~t~~~v~v~l~~~-~~--------------------~~~~~Yva~SRa~~ 85 (90)
-|+|++.|.+||.|.+-.+.. .| ....+||++||+++
T Consensus 678 ~Tih~akglefd~v~~~n~~~~~~~s~~~~~r~~~~r~~t~~~~e~n~lyV~vtRakk 735 (853)
T KOG2108|consen 678 GTIHQAKGLEFDNVHLQNDFVKVFGSVSNFERLPSFRVETYNEDEWNFLYVAVTRAKK 735 (853)
T ss_pred HHHHhccCcccceeecccCcccccccccchhhcchhhhhhhhhhhhhheeeeecchhh
Confidence 799999999999999854421 11 12568999999997
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function
Back Show alignment and domain information
Probab=85.37 E-value=0.63 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.3
Q ss_pred eeEeeeeeeeecccCCccceEEEEcCCC
Q psy14809 42 SLCLEYAITIHKCQGLSMNNALMDIGSS 69 (90)
Q Consensus 42 p~~~aya~TihKsQG~t~~~v~v~l~~~ 69 (90)
|-..-.+-+||.+||.+++.++|.+.+.
T Consensus 269 ~~~~~evgsi~t~QG~eldy~GVi~G~d 296 (352)
T PF09848_consen 269 PDSIDEVGSIYTIQGFELDYVGVIIGPD 296 (352)
T ss_pred CcccccceeEEEecccccceeEEEECCC
Confidence 3344567899999999999999998866
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
>KOG1803|consensus
Back Show alignment and domain information
Probab=84.76 E-value=0.87 Score=35.41 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred eeeeecccCCccceEEEEcC--CCC----C--CCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIG--SSV----F--SCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~--~~~----~--~~~~~Yva~SRa~~~~ 87 (90)
.-|+-+.||.|.+.|++.+= .+. | +..=+=||+||||...
T Consensus 553 V~TVD~fQGrEkdvVIfsmVRSN~k~evGFL~e~RRLNVAiTRaRRh~ 600 (649)
T KOG1803|consen 553 VGTVDGFQGREKDVVIFSLVRSNDKGEVGFLGETRRLNVAITRARRHF 600 (649)
T ss_pred eecccccccceeeEEEEEEEeecCcccccccCCcceeeEEEEeccceE
Confidence 46899999999999997433 221 2 4445899999999754
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 90
3e1s_A 574
Exodeoxyribonuclease V, subunit RECD; alpha and be
99.83 1w36_D 608
RECD, exodeoxyribonuclease V alpha chain; recombin
99.82 3upu_A 459
ATP-dependent DNA helicase DDA; RECA-like domain,
99.13 3dmn_A 174
Putative DNA helicase; APC89291.2, lactobacillus p
98.72 3vkw_A 446
Replicase large subunit; alpha/beta domain, helica
98.16 1uaa_A 673
REP helicase, protein (ATP-dependent DNA helicase
97.95 1pjr_A 724
PCRA; DNA repair, DNA replication, SOS response, h
97.92 3lfu_A 647
DNA helicase II; SF1 helicase, ATP-binding, DNA da
97.87 2gk6_A 624
Regulator of nonsense transcripts 1; UPF1, helicas
97.72 1w36_B 1180
RECB, exodeoxyribonuclease V beta chain; recombina
97.69 3u4q_A 1232
ATP-dependent helicase/nuclease subunit A; helicas
97.67 2wjy_A 800
Regulator of nonsense transcripts 1; nonsense medi
97.6 2xzl_A 802
ATP-dependent helicase NAM7; hydrolase-RNA complex
96.95 4b3f_X 646
DNA-binding protein smubp-2; hydrolase, helicase;
96.9 1w36_C 1122
RECC, exodeoxyribonuclease V gamma chain; recombin
89.54 3u4q_B 1166
ATP-dependent helicase/deoxyribonuclease subunit;
81.46
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Back Hide alignment and structure
Probab=99.83 E-value=2.4e-22 Score=148.91 Aligned_cols=88 Identities=25% Similarity=0.348 Sum_probs=70.4
Q ss_pred CEeeecCCCCCeecCCEEeee----ceEEEEEecCceeeeecccceeEeeeeeeeecccCCccceEEEEcCCC---CCCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL----ECVTTKFEVLPRAYVHREQFSLCLEYAITIHKCQGLSMNNALMDIGSS---VFSC 73 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~----~~~~~~~~~~~~~~~~r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~---~~~~ 73 (90)
|+++| |+..|++||+++... +.+.+.|+.....+......++.+|||+|||||||+||+.|++.++.. ++++
T Consensus 443 ~~~~N-~~~~~v~NGdiG~i~~~~~~~l~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~~~~l~r 521 (574)
T 3e1s_A 443 VQTKN-DYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPMLSR 521 (574)
T ss_dssp EECSC-BTTTTBCTTCEEEEEEECSSCEEEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGGGGGCCH
T ss_pred EEeec-CcccceecCceeEEEcCCCCEEEEEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcccccccc
Confidence 56788 889999999995432 346777764443444445668999999999999999999999988753 7899
Q ss_pred CceEEEeccccccccc
Q psy14809 74 GQAYVALSSQNTYWRT 89 (90)
Q Consensus 74 ~~~Yva~SRa~~~~~~ 89 (90)
+++|||+||||+...+
T Consensus 522 ~LlYvAiTRAk~~l~l 537 (574)
T 3e1s_A 522 NLVYTALTRARDRFFS 537 (574)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred ceEEEEeeeeeeEEEE
Confidence 9999999999986554
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Back Show alignment and structure
Probab=99.82 E-value=4e-22 Score=148.28 Aligned_cols=88 Identities=26% Similarity=0.340 Sum_probs=45.9
Q ss_pred CEeeecCCCCCeecCCEEeee---ceEEEEEe--cCceeeeecccce-eEeeeeeeeecccCCccceEEEEcCC---CCC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDL---ECVTTKFE--VLPRAYVHREQFS-LCLEYAITIHKCQGLSMNNALMDIGS---SVF 71 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~---~~~~~~~~--~~~~~~~~r~~~p-~~~aya~TihKsQG~t~~~v~v~l~~---~~~ 71 (90)
|+++| |+..||+||+++... +.+.+.|. .+..+.+....+| ++++||+|||||||+||+.|++.++. .++
T Consensus 483 m~~~N-d~~~gl~NGdiG~V~~~~~~l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~~~~ 561 (608)
T 1w36_D 483 MIARN-DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 (608)
T ss_dssp -----------------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCCSSS
T ss_pred eEeee-chhhcccCCCeEEEEEcCCeEEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCccchh
Confidence 78899 899999999995432 23455554 2333344445555 99999999999999999999999885 478
Q ss_pred CCCceEEEeccccccccc
Q psy14809 72 SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 72 ~~~~~Yva~SRa~~~~~~ 89 (90)
+++++|||+||+|+...+
T Consensus 562 ~~~~~Yva~tRa~~~l~l 579 (608)
T 1w36_D 562 TRELVYTAVTRARRRLSL 579 (608)
T ss_dssp CHHHHHHHHTTBSSCEEE
T ss_pred hhhhHHhhhhhhhceEEE
Confidence 999999999999987654
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Back Show alignment and structure
Probab=99.13 E-value=2.2e-12 Score=92.95 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=40.4
Q ss_pred cceeEeeeeeeeecccCCccceEEEEcCCCC-----CCCCceEEEeccccccccc
Q psy14809 40 QFSLCLEYAITIHKCQGLSMNNALMDIGSSV-----FSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 40 ~~p~~~aya~TihKsQG~t~~~v~v~l~~~~-----~~~~~~Yva~SRa~~~~~~ 89 (90)
..++..+||||+|||||+||+.|++..+... ..+.++|||+|||++..-+
T Consensus 404 ~~~~~~~~~~t~h~~kG~e~~~v~~~~~~~~~~~~~~~~~~~yva~tRa~~~l~~ 458 (459)
T 3upu_A 404 FSKVKALPASTFHKAQGMSVDRAFIYTPCIHYADVELAQQLLYVGVTRGRYDVFY 458 (459)
T ss_dssp BCCEEESSEEETGGGTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHHEEEEEEE
T ss_pred HhhcCcEEEEEEEeccCCCCCEEEEecCCCCCcChHHHhheeeeeecceeeEEEe
Confidence 3467899999999999999999999766421 1366799999999986644
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Back Show alignment and structure
Probab=98.72 E-value=4.9e-10 Score=71.65 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=35.2
Q ss_pred eeeeeeecccCCccceEEEEcCCC-----CCCCCceEEEeccccccccc
Q psy14809 46 EYAITIHKCQGLSMNNALMDIGSS-----VFSCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~l~~~-----~~~~~~~Yva~SRa~~~~~~ 89 (90)
-..+|+|+|||+|||.|++..... ...+.++|||+|||++..-+
T Consensus 102 v~v~t~~~~KGlEf~~V~~~~~~~~~~~~~~~~~llYva~TRA~~~l~~ 150 (174)
T 3dmn_A 102 VIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTL 150 (174)
T ss_dssp EEEEEGGGCTTCCEEEEEEETCBTTTSCSGGGHHHHHHHHTTEEEEEEE
T ss_pred eEEEEccccCCcCCCEEEEecCCcccCCChhhhceeEEEecCcccEEEE
Confidence 356899999999999999886643 23566899999999986544
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Back Show alignment and structure
Probab=98.16 E-value=1.6e-07 Score=68.14 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred eeeeecccCCccceEEEEcCCC----CC--CCCceEEEeccccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS----VF--SCGQAYVALSSQNTYWRT 89 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~----~~--~~~~~Yva~SRa~~~~~~ 89 (90)
++|+|.+||+|++.|.++..+. .+ ++..+|||+||+|+...+
T Consensus 371 ~~Tv~e~QG~tf~~Vtlvr~~~~~~~l~~~~~~~~~VALTRh~~~L~~ 418 (446)
T 3vkw_A 371 VHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKY 418 (446)
T ss_dssp CEETGGGTTCCEEEEEEEECCCSCCTTCSTTCHHHHHHHSSEEEEEEE
T ss_pred ccCHHHcCCcccCeEEEEECCCCCcccccCCccceEEEeecCCCEEEE
Confidence 6999999999999999875432 34 467899999999986543
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Back Show alignment and structure
Probab=97.95 E-value=6.3e-07 Score=66.96 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=31.1
Q ss_pred eeeeeecccCCccceEEEE-cCCCCCC-------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVFS-------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~~-------------~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|.+|+.|++. +....|. +.++|||+||||+..
T Consensus 553 ~l~TiH~sKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~EErRL~YVA~TRAk~~L 607 (673)
T 1uaa_A 553 QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKEL 607 (673)
T ss_dssp EEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEEE
T ss_pred EEEeeeecccccCCEEEEecCcCCCCCCcccCcchhHHHHHHHHHHHHHhhhheE
Confidence 4699999999999999985 2223332 236899999999754
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Back Show alignment and structure
Probab=97.92 E-value=8.1e-07 Score=67.16 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=31.2
Q ss_pred eeeeeecccCCccceEEEE-cCCCCCC--------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMD-IGSSVFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~-l~~~~~~--------------~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|++|+.|++. +....|. +.++|||+|||++..
T Consensus 560 ~lmTiH~aKGLEf~~Vfl~g~~eg~~P~~~~~~~~~~~eEErRL~YVaiTRA~~~L 615 (724)
T 1pjr_A 560 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEEL 615 (724)
T ss_dssp EEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEeeehhcCCCCCEEEEeCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHhheE
Confidence 4599999999999999985 2223332 346899999999754
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Back Show alignment and structure
Probab=97.87 E-value=1.1e-06 Score=64.91 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=31.3
Q ss_pred eeeeeecccCCccceEEEEc-CCCCCC--------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDI-GSSVFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l-~~~~~~--------------~~~~Yva~SRa~~~~ 87 (90)
--||+|+|+|++|+.|++.- ....|. +.++|||+||||+..
T Consensus 555 ~l~TiH~aKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~~eeErrL~YVa~TRAk~~L 610 (647)
T 3lfu_A 555 QLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKL 610 (647)
T ss_dssp EEEETGGGTTCCEEEEEECCCBTBTTTBTTCC--CTTHHHHHHHHHHHHTTEEEEE
T ss_pred EEEeeecccCccCCEEEEeCCcCCCCCCcccccCchhHHHHHHHHHHHHhHHhhhe
Confidence 46999999999999999852 222332 247999999999753
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Back Show alignment and structure
Probab=97.72 E-value=1.7e-06 Score=64.48 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=32.5
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
..|+|++||+|+|.|++.+... ..++..+|||+||||...-
T Consensus 533 v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ 581 (624)
T 2gk6_A 533 IASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 581 (624)
T ss_dssp EECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEE
T ss_pred EechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEE
Confidence 5699999999999999865432 2256789999999998653
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Back Show alignment and structure
Probab=97.69 E-value=2.3e-06 Score=67.74 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.1
Q ss_pred eeeeeecccCCccceEEEE
Q psy14809 47 YAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~ 65 (90)
--||||||+|++|+.|++.
T Consensus 737 ~ImTIHkSKGLEfpvVfl~ 755 (1180)
T 1w36_B 737 QIVTIHKSKGLEYPLVWLP 755 (1180)
T ss_dssp EEEETTTTSSCCEEEEEET
T ss_pred EEEEEeccCCCcCCEEEEe
Confidence 4699999999999999984
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Back Show alignment and structure
Probab=97.67 E-value=5.8e-06 Score=65.77 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.6
Q ss_pred eeeeeecccCCccceEEEEc
Q psy14809 47 YAITIHKCQGLSMNNALMDI 66 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l 66 (90)
--||||||+|++|+.|++.-
T Consensus 789 ~ImTIH~SKGLEfpvVfl~g 808 (1232)
T 3u4q_A 789 RLMTIHSSKGLEFPVVFVAG 808 (1232)
T ss_dssp EEEEGGGTTTCCEEEEEEEC
T ss_pred EEecchhccCCCCCEEEEcc
Confidence 46999999999999999863
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Back Show alignment and structure
Probab=97.60 E-value=4.8e-06 Score=63.95 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=32.9
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
..|+|++||+|+|.|++.+... .-++..+|||+||||...-
T Consensus 709 V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~Li 757 (800)
T 2wjy_A 709 IASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 757 (800)
T ss_dssp EECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEE
T ss_pred EccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEE
Confidence 5699999999999999876532 1246689999999998653
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Back Show alignment and structure
Probab=96.95 E-value=4.8e-05 Score=58.46 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=32.3
Q ss_pred eeeeeecccCCccceEEEEcCCC--------CCCCCceEEEecccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYWR 88 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~~ 88 (90)
-..|+|++||+|+|.|++.+-.. .-+...+|||+||||...-
T Consensus 710 ~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~Li 759 (802)
T 2xzl_A 710 EVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLV 759 (802)
T ss_dssp EEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEE
T ss_pred EEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEE
Confidence 35799999999999999865432 1245679999999998653
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Back Show alignment and structure
Probab=96.90 E-value=7.1e-05 Score=55.86 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=30.7
Q ss_pred eeeeecccCCccceEEEEcCCC--------CCCCCceEEEeccccccc
Q psy14809 48 AITIHKCQGLSMNNALMDIGSS--------VFSCGQAYVALSSQNTYW 87 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~l~~~--------~~~~~~~Yva~SRa~~~~ 87 (90)
.-|||+.||+|.|-|++.+-.. +.+..-+.||+||||+..
T Consensus 559 v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVAlTRAk~~l 606 (646)
T 4b3f_X 559 IKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 606 (646)
T ss_dssp EEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHHHHTEEEEE
T ss_pred ECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeEhhhhhCeE
Confidence 4699999999999998865321 224455899999999864
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Back Show alignment and structure
Probab=89.54 E-value=0.065 Score=42.57 Aligned_cols=20 Identities=5% Similarity=0.002 Sum_probs=17.4
Q ss_pred eeeeeeecccCCccceEEEE
Q psy14809 46 EYAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~ 65 (90)
---||+|.|.|.+|+.|++.
T Consensus 659 V~l~Tlh~aKgLef~vVfll 678 (1122)
T 1w36_C 659 VNICTLMPMRSIPFKVVCLL 678 (1122)
T ss_dssp CEEECCCTTCCCCEEEEEEE
T ss_pred EEEeccccccCCCcCEEEEe
Confidence 34699999999999999875
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Back Show alignment and structure
Probab=81.46 E-value=0.4 Score=38.06 Aligned_cols=20 Identities=0% Similarity=-0.042 Sum_probs=17.5
Q ss_pred eeeeeeecccCCccceEEEE
Q psy14809 46 EYAITIHKCQGLSMNNALMD 65 (90)
Q Consensus 46 aya~TihKsQG~t~~~v~v~ 65 (90)
--.+|+|.|+|.+|+.|++.
T Consensus 588 V~i~t~~~argl~f~~V~l~ 607 (1166)
T 3u4q_B 588 VFVGNMDLSRMYGTSCTFVL 607 (1166)
T ss_dssp EEEEESSSCCCSSCSEEEEE
T ss_pred EEEecCcccccCCCCEEEEe
Confidence 34699999999999999985
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 90
d1w36d2 246
Exodeoxyribonuclease V alpha chain (RecD) {Escheri
99.9 d1w36b2 395
Exodeoxyribonuclease V beta chain (RecB), N-termin
98.71 g1qhh.1 623
DEXX box DNA helicase {Bacillus stearothermophilus
98.54 d1uaaa2 333
DEXX box DNA helicase {Escherichia coli, RepD [Tax
98.39 d1pjra2 333
DEXX box DNA helicase {Bacillus stearothermophilus
97.99 d1w36c2 470
Exodeoxyribonuclease V gamma chain (RecC), N-termi
95.26
>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4e-26 Score=152.63 Aligned_cols=89 Identities=26% Similarity=0.309 Sum_probs=46.0
Q ss_pred CEeeecCCCCCeecCCEEeeec-----eEEEEEecCceeeee-cccceeEeeeeeeeecccCCccceEEEEcCCC---CC
Q psy14809 1 MLRRNIDVSMGLVNGSIVYDLE-----CVTTKFEVLPRAYVH-REQFSLCLEYAITIHKCQGLSMNNALMDIGSS---VF 71 (90)
Q Consensus 1 ml~rN~d~~~Gl~NG~~~~~~~-----~~~~~~~~~~~~~~~-r~~~p~~~aya~TihKsQG~t~~~v~v~l~~~---~~ 71 (90)
|.++| |+..|++||+++..++ .+.+.+..+....+. .....+++|||+|||||||+|++.|++.+++. ++
T Consensus 123 ~~t~N-d~~~~v~NGd~g~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ayA~TiHkaQGse~~~v~~~l~~~~~~~~ 201 (246)
T d1w36d2 123 MIARN-DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 201 (246)
T ss_dssp -----------------------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCCSSS
T ss_pred EEecc-CcccccccccceEEEecCCCcEEEEEecCCcEEEeehHhchhhhhheeccHHHhccCCCCcceeccCccccccc
Confidence 67899 9999999999954321 122333333323333 33445899999999999999999999998753 78
Q ss_pred CCCceEEEecccccccccC
Q psy14809 72 SCGQAYVALSSQNTYWRTF 90 (90)
Q Consensus 72 ~~~~~Yva~SRa~~~~~~~ 90 (90)
++.++|||+||||+...||
T Consensus 202 ~r~l~YtaiTRAk~~~~l~ 220 (246)
T d1w36d2 202 TRELVYTAVTRARRRLSLY 220 (246)
T ss_dssp CHHHHHHHHTTBSSCEEEE
T ss_pred chhhHHHHHhhhhCeEEEE
Confidence 9999999999999877654
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=3.4e-10 Score=78.25 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.6
Q ss_pred eeeeecccCCccceEEEE
Q psy14809 48 AITIHKCQGLSMNNALMD 65 (90)
Q Consensus 48 a~TihKsQG~t~~~v~v~ 65 (90)
-||||||+|.||+.|+|.
T Consensus 253 ImTIHkSKGLEfpvVflp 270 (395)
T d1w36b2 253 IVTIHKSKGLEYPLVWLP 270 (395)
T ss_dssp EEETTTTSSCCEEEEEET
T ss_pred EEchhhhccCCCCEEEEc
Confidence 499999999999999984
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]
Probab=98.39 E-value=6.2e-09 Score=68.35 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=32.8
Q ss_pred eeeeeeeecccCCccceEEEEcC-CCCC-------------CCCceEEEecccccccc
Q psy14809 45 LEYAITIHKCQGLSMNNALMDIG-SSVF-------------SCGQAYVALSSQNTYWR 88 (90)
Q Consensus 45 ~aya~TihKsQG~t~~~v~v~l~-~~~~-------------~~~~~Yva~SRa~~~~~ 88 (90)
.-..||+|+|.|++++.|++.-- ...| .+.++|||+|||++..-
T Consensus 244 ~V~l~TiH~sKGlE~~~V~i~g~~~~~~p~~~~~~~~~leEerRL~YVA~TRA~~~L~ 301 (333)
T d1uaaa2 244 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELT 301 (333)
T ss_dssp SEEEEESTTTSSCCEEEEEECCCBSSTTTTHHHHTTTCCHHHHHHHHHHHHTEEEEEE
T ss_pred cEEEeehhhhhccCCCeeEecCcccCCCcccccCCcccHHHHHHHhHhhHHHHhheeE
Confidence 34679999999999999987522 2333 23478999999998653
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.99 E-value=2.8e-07 Score=60.75 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.4
Q ss_pred eeeeeecccCCccceEEEEcCCC-CCC--------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDIGSS-VFS--------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l~~~-~~~--------------~~~~Yva~SRa~~~~ 87 (90)
.-+|+|+|+|.+++.|.+.-... .+. +.++|||+|||++..
T Consensus 242 ~i~T~h~sKgle~~~v~~~g~~~~~~p~~~~~~~~~~l~EErRLlYVA~TRAk~~L 297 (333)
T d1pjra2 242 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEEL 297 (333)
T ss_dssp EEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred EeecccccchhcccceeecCCccCCCchhhccCCchhHHHHHHHHHHHHHHHHHeE
Confidence 45899999999999998753322 222 226999999999754
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0011 Score=44.84 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=30.3
Q ss_pred eeeeeecccCCccceEEEEc-CCCCCC--------------------------CCceEEEeccccccc
Q psy14809 47 YAITIHKCQGLSMNNALMDI-GSSVFS--------------------------CGQAYVALSSQNTYW 87 (90)
Q Consensus 47 ya~TihKsQG~t~~~v~v~l-~~~~~~--------------------------~~~~Yva~SRa~~~~ 87 (90)
-.||+|.++|.+|+.|.|.- ....|. +.++|+|+|||++..
T Consensus 313 ~v~tih~akglef~vVfl~Gl~eg~fP~~~~~~~~~~~~~~~~~~~~~~~~eer~lfy~altrA~~~L 380 (470)
T d1w36c2 313 NICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKL 380 (470)
T ss_dssp EEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEE
T ss_pred EEecchhhcCCCCCEEEEEEecCceeecccccchhhhHHHHHhcccchhhHHHHHHHHHHHHhhhceE
Confidence 45999999999999998752 222332 236899999999743
