Psyllid ID: psy14814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MADADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSMEAE
Secondary Structure (PSIPRED)
ccccccccccccEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEccccccc
Coil and Loop (DISEMBL)
madadnvhskptkikasdmTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQldktyeptwhcivgrnfgsfvthesgnflYFYLDKIAILVFKSGSMEAE
Flexible Loop (DISEMBL)
madadnvhskptkikasdmtvdmEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSMEAE
Low Complexity Region (SEG)
MADADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSMEAE
Disordered region (IsUnstruct)
**************************TIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFK*******
Disordered Region (DISOPRED)
*************IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVF*SGS****
Disordered Region (DISEMBL)
*************IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSMEAE
Disordered Region (DISPRO)
*********KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSGSMEAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q22799	89	Dynein light chain 1, cyt	yes	N/A	0.82	0.921	0.621	3e-26
Q78P75	89	Dynein light chain 2, cyt	yes	N/A	0.82	0.921	0.609	4e-26
Q9D0M5	89	Dynein light chain 2, cyt	yes	N/A	0.82	0.921	0.609	4e-26
Q96FJ2	89	Dynein light chain 2, cyt	yes	N/A	0.82	0.921	0.609	4e-26
Q3MHR3	89	Dynein light chain 2, cyt	yes	N/A	0.82	0.921	0.609	4e-26
Q24117	89	Dynein light chain 1, cyt	yes	N/A	0.82	0.921	0.597	1e-25
P63170	89	Dynein light chain 1, cyt	no	N/A	0.82	0.921	0.585	1e-25
P63169	89	Dynein light chain 1, cyt	yes	N/A	0.82	0.921	0.585	1e-25
P63168	89	Dynein light chain 1, cyt	no	N/A	0.82	0.921	0.585	1e-25
P61273	89	Dynein light chain 1, cyt	N/A	N/A	0.82	0.921	0.585	1e-25

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ I  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.
Caenorhabditis elegans (taxid: 6239)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++++  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++++  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++++  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++++  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
270009128	157	hypothetical protein TcasGA2_TC015765 [T	0.92	0.585	0.576	1e-25
302817060	99	hypothetical protein SELMODRAFT_131219 [	0.82	0.828	0.634	1e-25
112180611	115	Dnl2 protein, partial [Danio rerio]	0.91	0.791	0.571	2e-25
112418924	125	Dnl2 protein [Danio rerio]	0.91	0.728	0.571	2e-25
92097700	126	Dnl2 protein, partial [Danio rerio]	0.91	0.722	0.571	2e-25
119614889	226	dynein, light chain, LC8-type 2, isoform	0.82	0.362	0.609	3e-25
340371207	89	PREDICTED: dynein light chain 2, cytopla	0.82	0.921	0.609	3e-25
313231038	89	unnamed protein product [Oikopleura dioi	0.89	1.0	0.584	4e-25
168061260	99	predicted protein [Physcomitrella patens	0.82	0.828	0.634	5e-25
294886303	89	dynein light chain motor protein, putati	0.82	0.921	0.621	5e-25

>gi|270009128|gb|EFA05576.1| hypothetical protein TcasGA2_TC015765 [Tribolium castaneum]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 70/92 (76%)

Query: 4   ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCI 63
           AD +  +   IK +DM+ DM+++ +  A  AI KY +EKDIA YIK + DK Y PTWHCI
Sbjct: 66  ADKMTDRKAVIKNADMSEDMQQDAVDCATQAIEKYNIEKDIAAYIKKEFDKKYNPTWHCI 125

Query: 64  VGRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
           VGRNFGS+VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 126 VGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|302817060|ref|XP_002990207.1| hypothetical protein SELMODRAFT_131219 [Selaginella moellendorffii] gi|302821645|ref|XP_002992484.1| hypothetical protein SELMODRAFT_135325 [Selaginella moellendorffii] gi|300139686|gb|EFJ06422.1| hypothetical protein SELMODRAFT_135325 [Selaginella moellendorffii] gi|300142062|gb|EFJ08767.1| hypothetical protein SELMODRAFT_131219 [Selaginella moellendorffii]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 67/82 (81%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DMT DM++++I  A  A+ KY VEKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 18 IKNADMTEDMQQDSIECASQALDKYNVEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 77

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++A+L+FKSG
Sbjct: 78 HETKHFIYFYLGQVAVLLFKSG 99

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|112180611|gb|AAH56312.2| Dnl2 protein, partial [Danio rerio]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 70/91 (76%)

Query: 5   DNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIV 64
           DN+  +   IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIV
Sbjct: 25  DNMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 84

Query: 65  GRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
           GRNFGS+VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 85  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 115

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|112418924|gb|AAI22095.1| Dnl2 protein [Danio rerio]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 70/91 (76%)

Query: 5   DNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIV 64
           DN+  +   IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIV
Sbjct: 35  DNMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 94

Query: 65  GRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
           GRNFGS+VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 95  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 125

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|92097700|gb|AAI15161.1| Dnl2 protein, partial [Danio rerio]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 70/91 (76%)

Query: 5   DNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIV 64
           DN+  +   IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIV
Sbjct: 36  DNMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 95

Query: 65  GRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
           GRNFGS+VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 96  GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 126

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119614889|gb|EAW94483.1| dynein, light chain, LC8-type 2, isoform CRA_a [Homo sapiens]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query: 14  IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
           IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 145 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 204

Query: 74  HESGNFLYFYLDKIAILVFKSG 95
           HE+ +F+YFYL ++AIL+FKSG
Sbjct: 205 HETKHFIYFYLGQVAILLFKSG 226

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340371207|ref|XP_003384137.1| PREDICTED: dynein light chain 2, cytoplasmic-like [Amphimedon queenslandica]

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ K+ +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAVEIATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ NF+YFYL ++AIL+FKSG
Sbjct: 68 HETKNFIYFYLGQVAILLFKSG 89

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|313231038|emb|CBY19036.1| unnamed protein product [Oikopleura dioica]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 67/89 (75%)

Query: 7  VHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGR 66
          ++ K   IK +DM+ DM+ + +  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGR
Sbjct: 1  MNEKRAVIKNADMSDDMQADVVECASQALDKYNIEKDIAAFIKKEFDKRYSPTWHCIVGR 60

Query: 67 NFGSFVTHESGNFLYFYLDKIAILVFKSG 95
          NFGSFVTHE+ NF+YFYL  +AIL+FKSG
Sbjct: 61 NFGSFVTHETKNFIYFYLGSVAILLFKSG 89

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|168061260|ref|XP_001782608.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665928|gb|EDQ52597.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DMT DM+++ I  A  A+ KY VEKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 18 IKNADMTEDMQQDAIECATAALDKYNVEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 77

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++A+L+FKSG
Sbjct: 78 HETRHFVYFYLGQVAVLLFKSG 99

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294886303|ref|XP_002771658.1| dynein light chain motor protein, putative [Perkinsus marinus ATCC 50983] gi|294937136|ref|XP_002781976.1| dynein light chain motor protein, putative [Perkinsus marinus ATCC 50983] gi|294953715|ref|XP_002787902.1| dynein light chain motor protein, putative [Perkinsus marinus ATCC 50983] gi|239875364|gb|EER03474.1| dynein light chain motor protein, putative [Perkinsus marinus ATCC 50983] gi|239893189|gb|EER13771.1| dynein light chain motor protein, putative [Perkinsus marinus ATCC 50983] gi|239902926|gb|EER19698.1| dynein light chain motor protein, putative [Perkinsus marinus ATCC 50983]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ I  A  A+ KY +EKDIA YIK + DK Y PTWHC+VGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCVVGRNFGSYVT 67

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HES +F+YFYL ++AIL+FKSG
Sbjct: 68 HESKHFIYFYLGQVAILLFKSG 89

Source: Perkinsus marinus ATCC 50983

Species: Perkinsus marinus

Genus: Perkinsus

Family: Perkinsidae

Order: Perkinsida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.91	0.722	0.571	2.5e-26
GENEDB_PFALCIPARUM|PFL0660w	93	PFL0660w "dynein light chain 1	0.92	0.989	0.554	2.2e-25
UNIPROTKB|Q8I5R9	93	PFL0660w "Dynein light chain 1	0.92	0.989	0.554	2.2e-25
WB|WBGene00001005	89	dlc-1 [Caenorhabditis elegans	0.82	0.921	0.621	2.2e-25
UNIPROTKB|Q22799	89	dlc-1 "Dynein light chain 1, c	0.82	0.921	0.621	2.2e-25
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	0.82	0.901	0.609	2.9e-25
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	0.82	0.921	0.609	2.9e-25
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	0.82	0.901	0.609	2.9e-25
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	0.82	0.921	0.609	2.9e-25
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	0.82	0.921	0.609	2.9e-25

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 52/91 (57%), Positives = 70/91 (76%)

Query:     5 DNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIV 64
             DN+  +   IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIV
Sbjct:    36 DNMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIV 95

Query:    65 GRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
             GRNFGS+VTHE+ +F+YFYL ++AIL+FKSG
Sbjct:    96 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 126

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

GENEDB_PFALCIPARUM|PFL0660w PFL0660w "dynein light chain 1, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/92 (55%), Positives = 69/92 (75%)

Query:     4 ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCI 63
             AD   +K   +K  DMT +M+ + I  A  A+ KY VEKDIA +IK + D+ Y+PTWHC+
Sbjct:     2 ADRKSNKNAVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCV 61

Query:    64 VGRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
             VGRNFGS+VTHE+ NF+YFY+ ++AIL+FKSG
Sbjct:    62 VGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 93

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

UNIPROTKB|Q8I5R9 PFL0660w "Dynein light chain 1, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/92 (55%), Positives = 69/92 (75%)

Query:     4 ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCI 63
             AD   +K   +K  DMT +M+ + I  A  A+ KY VEKDIA +IK + D+ Y+PTWHC+
Sbjct:     2 ADRKSNKNAVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCV 61

Query:    64 VGRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
             VGRNFGS+VTHE+ NF+YFY+ ++AIL+FKSG
Sbjct:    62 VGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 93

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

WB|WBGene00001005 dlc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ I  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:     8 IKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    68 HETKHFIYFYLGQVAILLFKSG 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q22799 dlc-1 "Dynein light chain 1, cytoplasmic" [Caenorhabditis elegans (taxid:6239)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/82 (62%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ I  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:     8 IKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    68 HETKHFIYFYLGQVAILLFKSG 89

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:    10 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 69

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    70 HETKHFIYFYLGQVAILLFKSG 91

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:     8 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    68 HETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:    10 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 69

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    70 HETKHFIYFYLGQVAILLFKSG 91

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:     8 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    68 HETKHFIYFYLGQVAILLFKSG 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 50/82 (60%), Positives = 66/82 (80%)

Query:    14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
             IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct:     8 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67

Query:    74 HESGNFLYFYLDKIAILVFKSG 95
             HE+ +F+YFYL ++AIL+FKSG
Sbjct:    68 HETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.6219	0.82	0.9213	yes	N/A
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.5061	0.81	0.9418	yes	N/A
P61273	DYL1_MACFA	No assigned EC number	0.5853	0.82	0.9213	N/A	N/A
Q9UR05	DYL1_SCHPO	No assigned EC number	0.6097	0.82	0.9647	yes	N/A
Q78P75	DYL2_RAT	No assigned EC number	0.6097	0.82	0.9213	yes	N/A
Q9D0M5	DYL2_MOUSE	No assigned EC number	0.6097	0.82	0.9213	yes	N/A
Q86A88	DYL_DICDI	No assigned EC number	0.4878	0.82	0.9010	yes	N/A
O94111	DYL1_EMENI	No assigned EC number	0.5609	0.82	0.8723	yes	N/A
Q6CWX4	DYL1_KLULA	No assigned EC number	0.5287	0.86	0.9885	yes	N/A
Q94758	DYL1_SCHMA	No assigned EC number	0.5853	0.82	0.9213	N/A	N/A
P63170	DYL1_RAT	No assigned EC number	0.5853	0.82	0.9213	no	N/A
P61285	DYL1_BOVIN	No assigned EC number	0.5853	0.82	0.9213	no	N/A
Q759T0	DYL1_ASHGO	No assigned EC number	0.4767	0.86	0.9772	yes	N/A
O02414	DYL1_HELCR	No assigned EC number	0.5853	0.82	0.9213	N/A	N/A
Q24117	DYL1_DROME	No assigned EC number	0.5975	0.82	0.9213	yes	N/A
Q39580	DYL1_CHLRE	No assigned EC number	0.5517	0.87	0.9560	N/A	N/A
Q96FJ2	DYL2_HUMAN	No assigned EC number	0.6097	0.82	0.9213	yes	N/A
Q3MHR3	DYL2_BOVIN	No assigned EC number	0.6097	0.82	0.9213	yes	N/A
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.5121	0.82	0.9010	yes	N/A
P63167	DYL1_HUMAN	No assigned EC number	0.5853	0.82	0.9213	no	N/A
Q94748	DYL2_SCHMA	No assigned EC number	0.5365	0.82	0.9213	N/A	N/A
Q02647	DYL1_YEAST	No assigned EC number	0.4945	0.9	0.9782	yes	N/A
O96860	DYL2_DROME	No assigned EC number	0.5853	0.82	0.9213	yes	N/A
P63168	DYL1_MOUSE	No assigned EC number	0.5853	0.82	0.9213	no	N/A
P63169	DYL1_RABIT	No assigned EC number	0.5853	0.82	0.9213	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	4e-44
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	5e-37
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-21

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  137 bits (348), Expect = 4e-44
 Identities = 44/83 (53%), Positives = 65/83 (78%)

Query: 13 KIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFV 72
           +K +DM  +M+++ I  A +A+ K+ VEKDIA +IK + DK Y PTWHCIVG+NFGS+V
Sbjct: 4  VVKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSYV 63

Query: 73 THESGNFLYFYLDKIAILVFKSG 95
          THE+ +F+YFY+ ++A L+FK+G
Sbjct: 64 THETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score =  119 bits (300), Expect = 5e-37
 Identities = 49/82 (59%), Positives = 66/82 (80%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          +K +DM+ DM+++ I  A  A+ K+ +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 9  VKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 68

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 69 HETKHFIYFYLGQVAILLFKSG 90

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 81.6 bits (201), Expect = 2e-21
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 13  KIKASDMTVDMEKETIRFAQD---AIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69
           +++ASDM + ++      A+D   A+      K +A+ +K + D  Y P WHCIVG +FG
Sbjct: 37  RVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFG 96

Query: 70  SFVTHESGNFLYFYLDKIAILVFKS 94
           S+VTH +G FLYF +DK+ IL+FK+
Sbjct: 97  SYVTHSTGGFLYFSIDKVYILLFKT 121

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG3430|consensus	90		100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.55
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	90.83

>KOG3430|consensus

Probab=100.00  E-value=4.7e-41  Score=212.85  Aligned_cols=86  Identities=56%  Similarity=1.085  Sum_probs=83.5

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEE
Q psy14814         10 KPTKIKASDMTVDMEKETIRFAQDAIAKYK-VEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIA   88 (100)
Q Consensus        10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~-~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~   88 (100)
                      .+++|+.+|||++||++|++++.+|+++|+ ++++||..||++||++|||+||||||++|||+|||++++|+||++|.++
T Consensus         4 ~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l~   83 (90)
T KOG3430|consen    4 RKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVLA   83 (90)
T ss_pred             ccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceEE
Confidence            378899999999999999999999999999 8899999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeC
Q psy14814         89 ILVFKSG   95 (100)
Q Consensus        89 vLl~kt~   95 (100)
                      |||||+.
T Consensus        84 illfK~~   90 (90)
T KOG3430|consen   84 ILLFKCA   90 (90)
T ss_pred             EEEEecC
Confidence            9999984

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=3.6e-40  Score=211.26  Aligned_cols=86  Identities=57%  Similarity=1.099  Sum_probs=83.8

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814         10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI   89 (100)
Q Consensus        10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v   89 (100)
                      .+++|+.+|||++||++|++++.+|+++++.++|||++||++||++|||+||||||++|||++||++++||||++|+++|
T Consensus         5 ~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~~v   84 (90)
T PTZ00059          5 RKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAI   84 (90)
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCEEE
Confidence            37789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeC
Q psy14814         90 LVFKSG   95 (100)
Q Consensus        90 Ll~kt~   95 (100)
                      ||||++
T Consensus        85 LlfK~~   90 (90)
T PTZ00059         85 LLFKSG   90 (90)
T ss_pred             EEEecC
Confidence            999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=219.79  Aligned_cols=95  Identities=38%  Similarity=0.757  Sum_probs=89.3

Q ss_pred             CCCCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEE
Q psy14814          4 ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYK---VEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFL   80 (100)
Q Consensus         4 ~~~~~~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~---~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i   80 (100)
                      .|+-+.+++.|+.+|||++||++|+++|..|+++++   ++++||++||++||++|||+||||||++|||+|||++++||
T Consensus        28 ~~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fI  107 (128)
T PLN03058         28 QDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFL  107 (128)
T ss_pred             HhhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEE
Confidence            356778899999999999999999999999999974   67999999999999999999999999999999999999999


Q ss_pred             EEEeCCEEEEEeeeCCCC
Q psy14814         81 YFYLDKIAILVFKSGSME   98 (100)
Q Consensus        81 ~F~~~~~~vLl~kt~~~~   98 (100)
                      ||++|+++||||||+..+
T Consensus       108 yF~ig~~aiLLfKt~~~~  125 (128)
T PLN03058        108 YFSIDKVYILLFKTAVEP  125 (128)
T ss_pred             EEEECCEEEEEEeccCcc
Confidence            999999999999997653

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=4.9e-39  Score=205.08  Aligned_cols=86  Identities=55%  Similarity=0.976  Sum_probs=81.8

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814         10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI   89 (100)
Q Consensus        10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v   89 (100)
                      .+++|+.+|||++||++|+++|.+|++++++++++|++||++||++|||+||||||++|||++||++++|+||++++++|
T Consensus         4 ~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~~~   83 (89)
T PF01221_consen    4 NKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNIAF   83 (89)
T ss_dssp             CSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTEEE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeC
Q psy14814         90 LVFKSG   95 (100)
Q Consensus        90 Ll~kt~   95 (100)
                      |||||+
T Consensus        84 li~kt~   89 (89)
T PF01221_consen   84 LIFKTQ   89 (89)
T ss_dssp             EEEEE-
T ss_pred             EEEecC
Confidence            999984

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.55  E-value=0.0013  Score=40.37  Aligned_cols=54  Identities=11%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             CchHHHHHHHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEee
Q psy14814         39 KVEKDIAMYIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFK   93 (100)
Q Consensus        39 ~~~~diA~~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~k   93 (100)
                      .+..++++.|.+.+.++||+.+-||++++ |....... ..|.-...++...++|+
T Consensus        22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            56677999999999999999999999995 66555444 88888999999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=90.83  E-value=2.9  Score=32.37  Aligned_cols=54  Identities=22%  Similarity=0.367  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHhcccCCC-ceEEEEeC------C--cceeEEEccCcEEE-EEeCCEEEEEeee
Q psy14814         41 EKDIAMYIKTQLDKTYEP-TWHCIVGR------N--FGSFVTHESGNFLY-FYLDKIAILVFKS   94 (100)
Q Consensus        41 ~~diA~~IK~~lD~~yG~-~WhciVG~------~--Fgs~vth~~~~~i~-F~~~~~~vLl~kt   94 (100)
                      ..+.|..||+.||+-.-. .+-++|-.      +  |.+...+....+|. |.-|+..++||||
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS  251 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS  251 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence            467899999999996643 58888833      1  11111234445554 6689999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		3e-27
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		3e-27
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		3e-27
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		7e-27
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		8e-27
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		9e-27
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		1e-26
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		3e-26
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		3e-26
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		4e-26
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		9e-26
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		3e-25
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		2e-21

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 11 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 71 HETKHFIYFYLGQVAILLFKSG 92

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 13 IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 72
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 73 HETKHFIYFYLGQVAILLFKSG 94

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score =  115 bits (287), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETRHFIYFYLGQVAILLFKSG 89

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 66/82 (80%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 10 IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 69
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 70 HETRHFIYFYLGQVAILLFKSG 91

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score =  115 bits (287), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++++  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 4  IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 63
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 64 HETKHFIYFYLGQVAILLFKSG 85

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 67/82 (81%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++++  A  A+ KY +EKDIA +IK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 65/82 (79%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 8  IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FK G
Sbjct: 68 HETRHFIYFYLGQVAILLFKEG 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 65/82 (79%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM+ +M+++ +  A  A+ KY +E DIA YIK + DK Y PTWHCIVGRNFGS+VT
Sbjct: 10 IKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 69
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFYL ++AIL+FKSG
Sbjct: 70 HETRHFIYFYLGQVAILLFKSG 91

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)
Query: 10  KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69
           + + +K  DMT +M+ + I  A  A+ KY VEKDIA +IK + D+ Y+PTWHC+VGRNFG
Sbjct: 17  RGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFG 76
Query: 70  SFVTHESGNFLYFYLDKIAILVFKSG 95
           S+VTHE+ NF+YFY+ ++AIL+FKSG
Sbjct: 77  SYVTHETKNFIYFYIGQVAILLFKSG 102

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGR--NFGSF 71
          IK +DM+ DM+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGR  NFGS+
Sbjct: 8  IKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGSY 67
Query: 72 VTHESGNFLYFYLDKIAILVFKSG 95
          VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 68 VTHETKHFIYFYLGQVAILLFKSG 91

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 65/82 (79%)
Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          IK +DM  D++++ I  A  A+ KY +EKDIA +IK + D+ + PTWHC+VGRNFGS+VT
Sbjct: 8  IKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVT 67
Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE+ +F+YFY+ ++A+L+FKSG
Sbjct: 68 HETHHFIYFYIGQVAVLLFKSG 89

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Query: 4  ADNVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCI 63
          +D   S P  +KASD+T  ++++ +  ++DA+ KY++E+DIA  +K QLD  Y  TWH I
Sbjct: 7  SDENKSTPI-VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVI 65
Query: 64 VGRNFGSFVTHESGNFLYFYLDKIAILVFKS 94
          VG+NFGS+VTHE G+F+YFY+  +A LVFK+
Sbjct: 66 VGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	9e-41
1yo3_A	102	Dynein light chain 1; structural genomics consorti	2e-39

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  129 bits (325), Expect = 9e-41
 Identities = 42/82 (51%), Positives = 63/82 (76%)

Query: 14 IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVT 73
          +KASD+T  ++++ +  ++DA+ KY++E+DIA  +K QLD  Y  TWH IVG+NFGS+VT
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVT 75

Query: 74 HESGNFLYFYLDKIAILVFKSG 95
          HE G+F+YFY+  +A LVFK+ 
Sbjct: 76 HEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  125 bits (316), Expect = 2e-39
 Identities = 50/102 (49%), Positives = 70/102 (68%), Gaps = 7/102 (6%)

Query: 1   MADADNVHSKPTK-------IKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLD 53
           M  + + H   +        +K  DMT +M+ + I  A  A+ KY VEKDIA +IK + D
Sbjct: 1   MGSSHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFD 60

Query: 54  KTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAILVFKSG 95
           + Y+PTWHC+VGRNFGS+VTHE+ NF+YFY+ ++AIL+FKSG
Sbjct: 61  RKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-43  Score=226.28  Aligned_cols=87  Identities=48%  Similarity=0.901  Sum_probs=84.7

Q ss_pred             CCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEE
Q psy14814          9 SKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIA   88 (100)
Q Consensus         9 ~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~   88 (100)
                      ..+++|+.+|||++||++|+++|.+|+++++++++||++||++||++|||+||||||++|||++||++++||||++|+++
T Consensus        11 ~~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~a   90 (97)
T 4ds1_A           11 KSTPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLA   90 (97)
T ss_dssp             -CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEE
T ss_pred             CCccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEE
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeC
Q psy14814         89 ILVFKSG   95 (100)
Q Consensus        89 vLl~kt~   95 (100)
                      ||||||+
T Consensus        91 iLlfKtg   97 (97)
T 4ds1_A           91 FLVFKTA   97 (97)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999985

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=7.8e-43  Score=222.30  Aligned_cols=86  Identities=51%  Similarity=1.038  Sum_probs=84.3

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814         10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI   89 (100)
Q Consensus        10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v   89 (100)
                      .+++|+.+|||++||++|+++|.+|+++++.+++||++||++||++|||+||||||++|||++||++++||||++|+++|
T Consensus         4 ~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~~i   83 (89)
T 3rjs_A            4 RKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQVAV   83 (89)
T ss_dssp             CCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTEEE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCEEE
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeC
Q psy14814         90 LVFKSG   95 (100)
Q Consensus        90 Ll~kt~   95 (100)
                      |||||+
T Consensus        84 LlfKtg   89 (89)
T 3rjs_A           84 LLFKSG   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            999995

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=7.5e-42  Score=222.58  Aligned_cols=90  Identities=53%  Similarity=1.007  Sum_probs=83.9

Q ss_pred             CCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeC
Q psy14814          6 NVHSKPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLD   85 (100)
Q Consensus         6 ~~~~~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~   85 (100)
                      +..+++++|+.+|||++||++|+++|.+|+++++++++||++||++||++|||+||||||++|||+|||++++||||++|
T Consensus        13 ~~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g   92 (102)
T 1yo3_A           13 GLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIG   92 (102)
T ss_dssp             -----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEET
T ss_pred             ccCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEEC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeeeC
Q psy14814         86 KIAILVFKSG   95 (100)
Q Consensus        86 ~~~vLl~kt~   95 (100)
                      +++||||||+
T Consensus        93 ~~aiLlfKt~  102 (102)
T 1yo3_A           93 QVAILLFKSG  102 (102)
T ss_dssp             TEEEEEEECC
T ss_pred             CEEEEEEecC
Confidence            9999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	1e-37

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  119 bits (300), Expect = 1e-37
 Identities = 49/86 (56%), Positives = 67/86 (77%)

Query: 10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFG 69
          +   IK +DM+ +M+++ +  A  A+ KY +EKDIA YIK + DK Y PTWHCIVGRNFG
Sbjct: 2  RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 61

Query: 70 SFVTHESGNFLYFYLDKIAILVFKSG 95
          S+VTHE+ +F+YFYL ++AIL+FKSG
Sbjct: 62 SYVTHETRHFIYFYLGQVAILLFKSG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	83.64
d1ulia1	154	Biphenyl dioxygenase large subunit BphA1, N-termin	82.84
d2b1xa1	162	Naphthalene 1,2-dioxygenase alpha subunit, N-domai	82.7

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4e-42  Score=216.67  Aligned_cols=86  Identities=57%  Similarity=1.099  Sum_probs=84.0

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCEEE
Q psy14814         10 KPTKIKASDMTVDMEKETIRFAQDAIAKYKVEKDIAMYIKTQLDKTYEPTWHCIVGRNFGSFVTHESGNFLYFYLDKIAI   89 (100)
Q Consensus        10 ~~i~v~~~dM~~~mq~~~~~~a~~a~~~~~~~~diA~~IK~~lD~~yG~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~v   89 (100)
                      .+++|+.+|||++||++|+++|.+|+++|+.++|+|++||++||++|||+||||||++|||++||++++|+||++|+++|
T Consensus         2 ~k~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~~~   81 (87)
T d3e2ba1           2 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI   81 (87)
T ss_dssp             CCEEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTEEE
T ss_pred             CcceEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCEEE
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeC
Q psy14814         90 LVFKSG   95 (100)
Q Consensus        90 Ll~kt~   95 (100)
                      |||||+
T Consensus        82 Ll~Ktg   87 (87)
T d3e2ba1          82 LLFKSG   87 (87)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999996

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=83.64  E-value=1.5  Score=27.45  Aligned_cols=48  Identities=8%  Similarity=0.263  Sum_probs=37.8

Q ss_pred             HHHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCCC
Q psy14814         46 MYIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSME   98 (100)
Q Consensus        46 ~~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~~   98 (100)
                      +...+++++-|...||+|.=.+ +-     ++|.|+-+.+++..++|+|..+.+
T Consensus        21 ~~f~~E~~~if~~~W~~v~~~~elp-----~~Gd~~~~~i~~~~~vv~R~~dg~   69 (150)
T d2bmoa1          21 ELFQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQNDGS   69 (150)
T ss_dssp             HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTSC
T ss_pred             HHHHHHHHHHHHcCCeEeehHHHcC-----CCcceeeeeecCceeEEEecCCCc
Confidence            3567888888999999986553 32     368888889999999999987654

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=82.84  E-value=1.7  Score=27.19  Aligned_cols=47  Identities=15%  Similarity=0.436  Sum_probs=36.8

Q ss_pred             HHHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCCC
Q psy14814         47 YIKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSME   98 (100)
Q Consensus        47 ~IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~~   98 (100)
                      ....++++-|...|++|.=.+ .-     ++|.|+-+.+++..+||||..+.+
T Consensus        27 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~ilv~R~~~g~   74 (154)
T d1ulia1          27 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQKNGE   74 (154)
T ss_dssp             HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTSC
T ss_pred             HHHHHHHHHhccCCEEEEEhhhCC-----CCcceeeeecCCcceeEEeecccc
Confidence            556777888999999986443 32     467888899999999999987654

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=82.70  E-value=3.1  Score=26.13  Aligned_cols=46  Identities=13%  Similarity=0.381  Sum_probs=34.7

Q ss_pred             HHHHhcccCCCceEEEEeCC-cceeEEEccCcEEEEEeCCEEEEEeeeCCCC
Q psy14814         48 IKTQLDKTYEPTWHCIVGRN-FGSFVTHESGNFLYFYLDKIAILVFKSGSME   98 (100)
Q Consensus        48 IK~~lD~~yG~~WhciVG~~-Fgs~vth~~~~~i~F~~~~~~vLl~kt~~~~   98 (100)
                      ...+.++-|...|++|-=.+ +-     .++.|+-+.+++..++|||..+.+
T Consensus        34 f~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~~vv~R~~dG~   80 (162)
T d2b1xa1          34 HDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRDEGGE   80 (162)
T ss_dssp             HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTSC
T ss_pred             HHHHHHHHHcCCCEEEEEHHHcC-----CccceeeEeecCCceEEEecCCcc
Confidence            34567788899999986543 32     457788889999999999986643