Psyllid ID: psy14827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQRRAYGLENEEISSSDMTVGESRSPSETEPGWESNPRPSAHKADQVTRLAKSKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE
Secondary Structure (PSIPRED)
cccccEEEcccccEEEEEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccEEEEEEccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHccccccEEcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEcccccccEEEcccccccccHcccccccccEEEEccccHHHHHHHHHHHHccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MSRSVLTYCTEKLSLKQINTISnkqqtypgQAETLAKIKENLqgeesnerknlkhppppspqairvwtlrspfNKILDTALQRRAYgleneeisssdmtvgesrspsetepgwesnprpsahkaDQVTRLakskatpfnpmvgwtGVATWRwvanddtcgicriafegccsdcklpgddcplvwgqcshcfhIHCIMKWlnsqqvhhqcpmcrqewkfke
Flexible Loop (DISEMBL)
MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQGEESnerknlkhppppsPQAIRVWTLRSPFNKILDTALQRRAYGLeneeisssdmtvgesrspsetepgwesnprpsahKADQVTRLakskatpfnpmvgWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE
Low Complexity Region (SEG)
MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQRRAYGLENEEISSSDMTVGESRSPSETEPGWESNPRPSAHKADQVTRLAKSKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE
Disordered region (IsUnstruct)
*****LTYCTEKLSLKQI*********************************************IRVWTLRSPFNKILDTALQRRAY**************************************************PFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW****
Disordered Region (DISOPRED)
*SRSV**YCTEKLS********************************************************************************************************************************GWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK*
Disordered Region (DISEMBL)
MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQ****************SPQAIRVWTLRSPFNKILDTALQRRAYGLENEEI*************************************AKSKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE
Disordered Region (DISPRO)
***SVLTYCTEKLSLKQINTISNK************************************************FNKILDTALQRRA**************************************************TPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPSPQAIRVWTLRSPFNKILDTALQRRAYGLENEEISSSDMTVGESRSPSETEPGWESNPRPSAHKADQVTRLAKSKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9CPX9	84	Anaphase-promoting comple	yes	N/A	0.35	0.916	0.818	4e-35
Q3ZCF6	84	Anaphase-promoting comple	yes	N/A	0.35	0.916	0.818	4e-35
Q5R8A2	84	Anaphase-promoting comple	yes	N/A	0.35	0.916	0.805	2e-34
Q9NYG5	84	Anaphase-promoting comple	yes	N/A	0.35	0.916	0.805	2e-34
Q9M9L0	84	Anaphase-promoting comple	yes	N/A	0.363	0.952	0.662	2e-29
Q54L48	87	Anaphase-promoting comple	yes	N/A	0.340	0.862	0.631	1e-25
Q9UT86	94	Anaphase-promoting comple	yes	N/A	0.363	0.851	0.469	1e-17
Q12157	165	Anaphase-promoting comple	yes	N/A	0.3	0.4	0.5	2e-15
Q23457	110	RING-box protein 1 OS=Cae	no	N/A	0.336	0.672	0.390	8e-12
O13959	107	RING-box protein pip1 OS=	no	N/A	0.331	0.682	0.395	2e-11

>sp|Q9CPX9|APC11_MOUSE Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=3 SV=1

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV   CPMCRQEWKFKE
Sbjct: 68  QVQQHCPMCRQEWKFKE 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. May recruit the E2 ubiquitin-conjugating enzymes to the complex.
Mus musculus (taxid: 10090)

>sp|Q3ZCF6|APC11_BOVIN Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV   CPMCRQEWKFKE
Sbjct: 68  QVQQHCPMCRQEWKFKE 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. May recruit the E2 ubiquitin-conjugating enzymes to the complex.

Bos taurus (taxid: 9913)

>sp|Q5R8A2|APC11_PONAB Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 69/77 (89%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV   CPMCRQEWKFKE
Sbjct: 68  QVQQHCPMCRQEWKFKE 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. May recruit the E2 ubiquitin-conjugating enzymes to the complex.

Pongo abelii (taxid: 9601)

>sp|Q9NYG5|APC11_HUMAN Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 69/77 (89%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct: 8   WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV   CPMCRQEWKFKE
Sbjct: 68  QVQQHCPMCRQEWKFKE 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. May recruit the E2 ubiquitin-conjugating enzymes to the complex.

Homo sapiens (taxid: 9606)

>sp|Q9M9L0|APC11_ARATH Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 66/80 (82%)

Query: 141 MVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWL 200
           ++ W  VA+W W A D+TCGICR+AF+GCC DCKLPGDDCPL+WG C+H FH+HCI+KW+
Sbjct: 5   ILRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWV 64

Query: 201 NSQQVHHQCPMCRQEWKFKE 220
           NSQ     CPMCR+EW+FKE
Sbjct: 65  NSQTSQAHCPMCRREWQFKE 84

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication. May recruit the E2 ubiquitin-conjugating enzymes to the complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54L48|APC11_DICDI Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W  V+ W W  N++ CGICR+AF+GCC DCK+PGDDCP VWG C+H FH+HCI+KWLN+ 
Sbjct: 9   WNTVSAWHWDVNEECCGICRMAFDGCCVDCKIPGDDCPPVWGVCNHAFHMHCILKWLNAN 68

Query: 204 QVHHQCPMCRQEWKFK 219
           ++  QCPMCR EW+FK
Sbjct: 69  EL-QQCPMCRSEWRFK 83

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UT86|APC11_SCHPO Anaphase-promoting complex subunit 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc11 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 141 MVGWTGVATWRW-VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW 199
           ++ +  +A W W    DD CGICR+ F+GCC  C  PGD+CP+VWG+C H FH HCI  W
Sbjct: 5   ILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNW 64

Query: 200 LNSQQVHHQCPMCRQEWKFKE 220
           L +     QCPM RQ +   +
Sbjct: 65  LATSGSQGQCPMDRQTFVVAD 85

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12157|APC11_YEAST Anaphase-promoting complex subunit 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APC11 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
           ++D CGICR ++ G C  CK PGD CPLV G C H FH HCI +WL++      CPMCRQ
Sbjct: 37  DEDVCGICRASYNGTCPSCKFPGDQCPLVIGLCHHNFHDHCIYRWLDTPTSKGLCPMCRQ 96

Query: 215 EWKFKE 220
            ++ ++
Sbjct: 97  TFQLQK 102

Probably catalytic subunit of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication. APC11 is required to recruit the ubiquitin-conjugating enzyme E2 to the APC/C.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q23457|RBX1_CAEEL RING-box protein 1 OS=Caenorhabditis elegans GN=rbx-1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 8/82 (9%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMK 198
           W+ VA W W    D C ICR      C +C+        D+C + WG C+H FH HCI +
Sbjct: 29  WSAVALWAWDIQVDNCAICRNHIMDLCIECQANQAAGLKDECTVAWGNCNHAFHFHCISR 88

Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 89  WLKTRQV---CPLDNREWEFQK 107

Component of the SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Through the RING-type zinc finger, seems to recruit the E2 ubiquitination enzyme to the complex and brings it into close proximity to the substrate (By similarity). Essential for meiosis, mitotic chromosomal condensation and cytokinesis. Involved in histone H3 phosphorylation.

Caenorhabditis elegans (taxid: 6239)

>sp|O13959|RBX1_SCHPO RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pip1 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGD-----DCPLVWGQCSHCFHIHCIMK 198
           W  VA W+W    D C ICR      C +C+   D     +C + WG C+H FH HCI +
Sbjct: 26  WNAVALWQWDIVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWGTCNHAFHFHCISR 85

Query: 199 WLNSQQVHHQCPMCRQEWKFK 219
           WLN++ V   CP+  +EW+F+
Sbjct: 86  WLNTRNV---CPLDNREWEFQ 103

Component of E3 ubiquitin ligase SCF complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Seems to recruit the E2 ubiquitination enzyme, like UBC3/CDC34, to the complex and brings it into close proximity to the substrate. Component of the rik1-associated E3 ubiquitin ligase complex that shows ubiquitin ligase activity and is required for histone H3K9 methylation. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting swi6/HP1 to methylated histones which leads to transcriptional silencing within centromeric heterochromatin, telomeric regions and at the silent mating-type loci.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
242022130	84	anaphase-promoting complex subunit, puta	0.35	0.916	0.870	4e-36
442761713	88	Putative anaphase promoting complex subu	0.35	0.875	0.857	1e-35
346466005	106	hypothetical protein [Amblyomma maculatu	0.35	0.726	0.844	2e-35
390340571	85	PREDICTED: anaphase-promoting complex su	0.35	0.905	0.844	8e-35
427793949	86	Putative anaphase promoting complex subu	0.35	0.895	0.844	9e-35
348521029	84	PREDICTED: anaphase-promoting complex su	0.35	0.916	0.844	1e-34
390340594	91	PREDICTED: anaphase-promoting complex su	0.359	0.868	0.822	1e-34
47223961	84	unnamed protein product [Tetraodon nigro	0.35	0.916	0.844	2e-34
443725234	82	hypothetical protein CAPTEDRAFT_198714 [	0.35	0.939	0.844	6e-34
332018555	84	Anaphase-promoting complex subunit 11 [A	0.35	0.916	0.831	1e-33

>gi|242022130|ref|XP_002431494.1| anaphase-promoting complex subunit, putative [Pediculus humanus corporis] gi|212516788|gb|EEB18756.1| anaphase-promoting complex subunit, putative [Pediculus humanus corporis]

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 72/77 (93%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVATWRWVANDD CGICR+ F+ CC+DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ
Sbjct: 8   WNGVATWRWVANDDNCGICRMPFDACCTDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           Q++H CPMCRQEWKFKE
Sbjct: 68  QINHHCPMCRQEWKFKE 84

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761713|gb|JAA73015.1| Putative anaphase promoting complex subunit 11, partial [Ixodes ricinus]

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 71/77 (92%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVA+WRWVANDD CGICR+AF+GCC DCK+PGDDCPLVWGQCSHCFHIHCIMKWLNSQ
Sbjct: 12  WAGVASWRWVANDDNCGICRMAFDGCCPDCKMPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 71

Query: 204 QVHHQCPMCRQEWKFKE 220
           Q+   CPMCRQEWKFKE
Sbjct: 72  QLQQLCPMCRQEWKFKE 88

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346466005|gb|AEO32847.1| hypothetical protein [Amblyomma maculatum]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           WT VA+WRW+ANDD CGICR+ F+GCC DCK+PGDDCPLVWGQCSHCFHIHCIMKWLNSQ
Sbjct: 30  WTSVASWRWIANDDNCGICRVPFDGCCPDCKMPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 89

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV   CPMCRQEWKFKE
Sbjct: 90  QVQQLCPMCRQEWKFKE 106

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390340571|ref|XP_781978.3| PREDICTED: anaphase-promoting complex subunit 11-like [Strongylocentrotus purpuratus]

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           WT VATWRW+ANDD CGICR AF+GCC DCK+PGDDCPLVWGQCSH FH+HCI+KWLNSQ
Sbjct: 9   WTAVATWRWIANDDNCGICRTAFDGCCPDCKMPGDDCPLVWGQCSHVFHMHCILKWLNSQ 68

Query: 204 QVHHQCPMCRQEWKFKE 220
           QVH  CPMCRQEWKFKE
Sbjct: 69  QVHQLCPMCRQEWKFKE 85

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|427793949|gb|JAA62426.1| Putative anaphase promoting complex subunit 11, partial [Rhipicephalus pulchellus]

 Score =  152 bits (384), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           WT VA+WRW+ANDD CGICR+ F+GCC DCK+PGDDCPLVWGQCSHCFHIHCIMKWLNSQ
Sbjct: 10  WTSVASWRWIANDDNCGICRVPFDGCCPDCKMPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 69

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV   CPMCRQEWKFKE
Sbjct: 70  QVQQLCPMCRQEWKFKE 86

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348521029|ref|XP_003448029.1| PREDICTED: anaphase-promoting complex subunit 11-like [Oreochromis niloticus]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVA+W WVANDD CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLNSQ
Sbjct: 8   WNGVASWLWVANDDNCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV  QCPMCRQEWKFKE
Sbjct: 68  QVQQQCPMCRQEWKFKE 84

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390340594|ref|XP_001185921.2| PREDICTED: anaphase-promoting complex subunit 11-like [Strongylocentrotus purpuratus]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 71/79 (89%)

Query: 142 VGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN 201
           + WT VATWRW+ANDD CGICR AF+GCC DCK+PGDDCPLVWGQCSH FH+HCI+KWLN
Sbjct: 13  MHWTAVATWRWIANDDNCGICRTAFDGCCPDCKMPGDDCPLVWGQCSHVFHMHCILKWLN 72

Query: 202 SQQVHHQCPMCRQEWKFKE 220
           SQQVH  CPMCRQEWKFKE
Sbjct: 73  SQQVHQLCPMCRQEWKFKE 91

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|47223961|emb|CAG06138.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 70/77 (90%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W GVA+W WVANDD CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLNSQ
Sbjct: 8   WNGVASWTWVANDDNCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           QV  QCPMCRQEWKFKE
Sbjct: 68  QVQQQCPMCRQEWKFKE 84

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443725234|gb|ELU12914.1| hypothetical protein CAPTEDRAFT_198714 [Capitella teleta]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 71/77 (92%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           +T VATWRWVANDD CGICR+ F+GCC DCK+PGDDCPLVWG+CSHCFHIHCI+KWLNSQ
Sbjct: 6   YTAVATWRWVANDDNCGICRMPFDGCCPDCKVPGDDCPLVWGRCSHCFHIHCIVKWLNSQ 65

Query: 204 QVHHQCPMCRQEWKFKE 220
           QVH  CPMCRQEWKFKE
Sbjct: 66  QVHQLCPMCRQEWKFKE 82

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|332018555|gb|EGI59144.1| Anaphase-promoting complex subunit 11 [Acromyrmex echinatior]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 70/77 (90%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           WTGVATWRW+ANDD CGICR+ F+  C DCK+PGDDCPLVWGQCSHCFHIHCIMKWL+SQ
Sbjct: 8   WTGVATWRWIANDDNCGICRMPFDASCPDCKIPGDDCPLVWGQCSHCFHIHCIMKWLHSQ 67

Query: 204 QVHHQCPMCRQEWKFKE 220
           Q +H CPMCRQEWKFKE
Sbjct: 68  QTNHICPMCRQEWKFKE 84

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
UNIPROTKB|Q3ZCF6	84	ANAPC11 "Anaphase-promoting co	0.35	0.916	0.818	4.8e-39
UNIPROTKB|E2R4W0	84	ANAPC11 "Uncharacterized prote	0.35	0.916	0.818	4.8e-39
MGI|MGI:1913406	84	Anapc11 "anaphase promoting co	0.35	0.916	0.818	4.8e-39
RGD|1561880	84	Anapc11 "anaphase promoting co	0.35	0.916	0.818	4.8e-39
ZFIN|ZDB-GENE-061013-383	88	anapc11 "APC11 anaphase promot	0.35	0.875	0.818	6.1e-39
UNIPROTKB|Q9NYG5	84	ANAPC11 "Anaphase-promoting co	0.35	0.916	0.805	1.6e-38
UNIPROTKB|Q5R8A2	84	ANAPC11 "Anaphase-promoting co	0.35	0.916	0.805	1.6e-38
UNIPROTKB|I3L933	84	ANAPC11 "Uncharacterized prote	0.327	0.857	0.791	4e-35
FB|FBgn0250903	85	lmgA "lemming A" [Drosophila m	0.340	0.882	0.746	8.3e-35
DICTYBASE|DDB_G0286909	87	anapc11 "anaphase promoting co	0.340	0.862	0.631	2.3e-30

UNIPROTKB|Q3ZCF6 ANAPC11 "Anaphase-promoting complex subunit 11" [Bos taurus (taxid:9913)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV   CPMCRQEWKFKE
Sbjct:    68 QVQQHCPMCRQEWKFKE 84

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R4W0 ANAPC11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV   CPMCRQEWKFKE
Sbjct:    68 QVQQHCPMCRQEWKFKE 84

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1913406 Anapc11 "anaphase promoting complex subunit 11" [Mus musculus (taxid:10090)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV   CPMCRQEWKFKE
Sbjct:    68 QVQQHCPMCRQEWKFKE 84

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1561880 Anapc11 "anaphase promoting complex subunit 11" [Rattus norvegicus (taxid:10116)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLN+Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNAQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV   CPMCRQEWKFKE
Sbjct:    68 QVQQHCPMCRQEWKFKE 84

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

ZFIN|ZDB-GENE-061013-383 anapc11 "APC11 anaphase promoting complex subunit 11 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 63/77 (81%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVA+W WVAND+ CGICR +F GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWLNSQ
Sbjct:     8 WNGVASWLWVANDENCGICRASFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLNSQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV  QCPMCRQEWKFKE
Sbjct:    68 QVQQQCPMCRQEWKFKE 84

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9NYG5 ANAPC11 "Anaphase-promoting complex subunit 11" [Homo sapiens (taxid:9606)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 62/77 (80%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV   CPMCRQEWKFKE
Sbjct:    68 QVQQHCPMCRQEWKFKE 84

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0007067 "mitosis" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

UNIPROTKB|Q5R8A2 ANAPC11 "Anaphase-promoting complex subunit 11" [Pongo abelii (taxid:9601)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 62/77 (80%), Positives = 69/77 (89%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query:   204 QVHHQCPMCRQEWKFKE 220
             QV   CPMCRQEWKFKE
Sbjct:    68 QVQQHCPMCRQEWKFKE 84

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

UNIPROTKB|I3L933 ANAPC11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 57/72 (79%), Positives = 64/72 (88%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W GVATW WVAND+ CGICR+AF GCC DCK+PGDDCPLVWGQCSHCFH+HCI+KWL++Q
Sbjct:     8 WNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQ 67

Query:   204 QVHHQCPMCRQE 215
             QV   CPMCRQE
Sbjct:    68 QVQQHCPMCRQE 79

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0250903 lmgA "lemming A" [Drosophila melanogaster (taxid:7227)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 56/75 (74%), Positives = 65/75 (86%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             WTGVATWRW+AND+ CGICR++FE  C +C LPGDDCPLVWG CSHCFH+HCI+KWLN Q
Sbjct:     8 WTGVATWRWIANDENCGICRMSFESTCPECALPGDDCPLVWGVCSHCFHMHCIVKWLNLQ 67

Query:   204 QVHHQCPMCRQEWKF 218
              ++ QCPMCRQ WKF
Sbjct:    68 PLNKQCPMCRQSWKF 82

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0005680 "anaphase-promoting complex" evidence=NAS;IPI

GO:0008270 "zinc ion binding" evidence=IEA

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IDA

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IPI

DICTYBASE|DDB_G0286909 anapc11 "anaphase promoting complex subunit 11" [Dictyostelium discoideum (taxid:44689)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 48/76 (63%), Positives = 61/76 (80%)

Query:   144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
             W  V+ W W  N++ CGICR+AF+GCC DCK+PGDDCP VWG C+H FH+HCI+KWLN+ 
Sbjct:     9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKIPGDDCPPVWGVCNHAFHMHCILKWLNAN 68

Query:   204 QVHHQCPMCRQEWKFK 219
             ++  QCPMCR EW+FK
Sbjct:    69 ELQ-QCPMCRSEWRFK 83

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051301 "cell division" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R8A2	APC11_PONAB	No assigned EC number	0.8051	0.35	0.9166	yes	N/A
Q54L48	APC11_DICDI	No assigned EC number	0.6315	0.3409	0.8620	yes	N/A
Q9NYG5	APC11_HUMAN	No assigned EC number	0.8051	0.35	0.9166	yes	N/A
Q9M9L0	APC11_ARATH	No assigned EC number	0.6625	0.3636	0.9523	yes	N/A
Q3ZCF6	APC11_BOVIN	No assigned EC number	0.8181	0.35	0.9166	yes	N/A
Q9CPX9	APC11_MOUSE	No assigned EC number	0.8181	0.35	0.9166	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	220
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	1e-41
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	5e-33
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	3e-25
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-08
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	3e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	4e-05
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-04
smart00184	40	smart00184, RING, Ring finger	0.002

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score =  136 bits (343), Expect = 1e-41
 Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 144 WTGVATWRW-VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS 202
           W  VATW W   +DD CGICR++F+G C  CK PGDDCPLVWG+C H FH+HCI+KWL +
Sbjct: 8   WNAVATWTWDTPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLAT 67

Query: 203 QQVHHQCPMCRQEWKFKE 220
           +     CPMCRQ + F E
Sbjct: 68  ETSKGLCPMCRQTFVFAE 85

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score =  113 bits (285), Expect = 5e-33
 Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ 203
           W  VA W W   DD C ICR  F+G C +CK PGDDCP+VWG+C H FH+HCI +WL ++
Sbjct: 7   WNAVALWSWDIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTR 66

Query: 204 QVHHQCPMCR 213
                CP+CR
Sbjct: 67  NT---CPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 94.1 bits (234), Expect = 3e-25
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 6/78 (7%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCK---LPGDDCPLVWGQCSHCFHIHCIMKWL 200
           W  VA W W    D C ICR    G C +C+    PGD+CP+VWG C+H FH HCI +WL
Sbjct: 8   WHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWL 67

Query: 201 NSQQVHHQCPMCRQEWKF 218
           +++ V   CP+ RQ W  
Sbjct: 68  DTKGV---CPLDRQTWVL 82

Length = 88

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 13/59 (22%)

Query: 157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           D C IC   FE       LP          C H FH  C+ KWL S    + CP+CR  
Sbjct: 1   DECPICLDEFEPGEEVVVLP----------CGHVFHKECLDKWLRS---SNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 14/59 (23%)

Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
            C IC   F              P+V   C H F   CI KWL S    + CP+CR   
Sbjct: 1   ECPICLEEF------------REPVVLLPCGHVFCRSCIDKWLKSG--KNTCPLCRTPI 45

Length = 45

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 20/82 (24%)

Query: 148 ATWRWVANDD-TCGICRIAFEGCCSDCKLPGDDCPLVWGQ--------CSHCFHIHCIMK 198
           AT   + N D TC IC         D     D  PL  G         C H  H+HC+  
Sbjct: 278 ATEEQLTNSDRTCTICM--------DEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKN 329

Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL  QQ    CP+CR+   F +
Sbjct: 330 WLERQQT---CPICRRPVIFDQ 348

Length = 491

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 159  CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF 218
            C IC    +    D  LP   C      C + FH  C+ KW  S      CP+CR E  F
Sbjct: 1472 CAICYSVLDM--VDRSLPSKRCA----TCKNKFHTRCLYKWFASSA-RSNCPLCRSEITF 1524

Length = 1525

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           C H FH+ C+ KWL      ++CP+CR  
Sbjct: 344 CDHRFHVGCVDKWLLGYS--NKCPVCRTA 370

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 170 CSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
           C  C       P V   C H F   CI KWL S   ++ CP+C
Sbjct: 1   CPICLEEYLKDP-VILPCGHTFCRSCIRKWLESG--NNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.89
KOG1493|consensus	84		99.85
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	99.85
KOG2930|consensus	114		99.81
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.8
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.5
KOG0317|consensus	293		99.45
KOG4628|consensus	348		99.34
KOG0823|consensus	230		99.26
PHA02929	238	N1R/p28-like protein; Provisional	99.26
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.1
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.09
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.08
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.07
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.0
PHA02926	242	zinc finger-like protein; Provisional	98.96
KOG0320|consensus	187		98.95
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.91
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.85
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.83
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.82
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.8
PF14634	44	zf-RING_5: zinc-RING finger domain	98.73
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.72
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.62
KOG0802|consensus	543		98.59
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.49
KOG2164|consensus	513		98.49
KOG0287|consensus	442		98.48
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.43
KOG1734|consensus	328		98.42
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.37
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.24
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.15
KOG0804|consensus	493		98.11
KOG2177|consensus	386		98.08
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.08
KOG0828|consensus	636		98.03
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.01
KOG0825|consensus	1134		97.99
KOG0978|consensus	698		97.76
KOG0311|consensus	381		97.7
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.63
KOG4445|consensus	368		97.41
KOG4172|consensus	62		97.39
KOG0297|consensus	391		97.36
KOG1039|consensus	344		97.35
PHA02862	156	5L protein; Provisional	97.22
KOG4265|consensus	349		97.19
COG5152	259	Uncharacterized conserved protein, contains RING a	97.17
KOG1645|consensus	463		97.15
PHA02825	162	LAP/PHD finger-like protein; Provisional	97.05
KOG1785|consensus	563		96.9
KOG4159|consensus	398		96.83
KOG3970|consensus	299		96.71
KOG1952|consensus	950		96.43
KOG1813|consensus	313		96.42
KOG1941|consensus	518		96.36
KOG1428|consensus	3738		96.07
PHA03096	284	p28-like protein; Provisional	96.02
KOG2660|consensus	331		95.95
KOG2114|consensus	933		95.89
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.87
KOG2879|consensus	298		95.68
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.66
KOG0826|consensus	357		95.55
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.51
KOG1002|consensus	791		95.39
KOG1571|consensus	355		94.87
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	94.84
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.81
KOG3268|consensus	234		94.58
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.29
KOG0309|consensus	1081		93.9
KOG2034|consensus	911		93.44
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	93.42
KOG4275|consensus	350		93.04
KOG0827|consensus	465		92.68
PF04641	260	Rtf2: Rtf2 RING-finger	92.63
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.42
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	91.97
KOG1001|consensus	674		91.78
KOG3039|consensus	303		91.67
KOG1814|consensus	445		91.52
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	91.0
KOG4692|consensus	489		90.87
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	90.79
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.74
KOG0298|consensus	1394		89.78
KOG1940|consensus	276		89.64
KOG0801|consensus	205		89.3
KOG3899|consensus	381		87.55
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	87.53
KOG3053|consensus	293		87.27
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	87.2
KOG2817|consensus	394		87.16
KOG3002|consensus	299		86.63
KOG1812|consensus	384		84.59
KOG4718|consensus	235		83.66
KOG2932|consensus	389		82.85
KOG4362|consensus	684		82.76
KOG1829|consensus	580		81.61
KOG3039|consensus	303		80.67

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.89  E-value=7.9e-24  Score=156.89  Aligned_cols=82  Identities=68%  Similarity=1.609  Sum_probs=76.8

Q ss_pred             Cccccccccceeccc-CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        139 NPMVGWTGVATWRWV-ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~-~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +.+++|++|+.|.|+ ..++.|.||+..|+..+..++.||+++|++++.|+|.||.+||.+||.+++.+..||+||++|+
T Consensus         3 v~i~~w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen    3 VKIKEWHAVATWKWDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eEEEEEEEEEEEEEecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            568899999999996 5799999999999999999999999999999999999999999999998556899999999999


Q ss_pred             ccC
Q psy14827        218 FKE  220 (220)
Q Consensus       218 ~~~  220 (220)
                      |||
T Consensus        83 ~k~   85 (85)
T PF12861_consen   83 FKE   85 (85)
T ss_pred             eCC
Confidence            997

>KOG1493|consensus

Probab=99.85  E-value=1.5e-22  Score=146.27  Aligned_cols=82  Identities=63%  Similarity=1.484  Sum_probs=78.2

Q ss_pred             CccccccccceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        139 NPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      +.++++++++.|.|+..++.|.||..+|+..|.+|++|+|++|++++.|.|.||.+||.+|+...++...||+||++|.|
T Consensus         3 vki~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen    3 VKIKRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             eEEEEEEEEEEEEEcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            46788999999999999999999999999999999999999999999999999999999999887778999999999999


Q ss_pred             cC
Q psy14827        219 KE  220 (220)
Q Consensus       219 ~~  220 (220)
                      +|
T Consensus        83 ~e   84 (84)
T KOG1493|consen   83 KE   84 (84)
T ss_pred             cC
Confidence            97

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=99.85  E-value=5.2e-22  Score=144.63  Aligned_cols=80  Identities=44%  Similarity=1.165  Sum_probs=76.7

Q ss_pred             CCccccccccceecccCCCcccccccccccccCCCCCC---CCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        138 FNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKL---PGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~---p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      ++++++|++++.|+|+...+.|+||...|.+.|++|+.   |+++++++++.|+|.||.+||.+||.+   +..||+||+
T Consensus         2 kvkIkkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T---k~~CPld~q   78 (88)
T COG5194           2 KVKIKKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT---KGVCPLDRQ   78 (88)
T ss_pred             ceEeeeEeEEEEEecccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh---CCCCCCCCc
Confidence            57889999999999999999999999999999999998   899999999999999999999999999   999999999


Q ss_pred             cccccC
Q psy14827        215 EWKFKE  220 (220)
Q Consensus       215 e~~~~~  220 (220)
                      +|.|+.
T Consensus        79 ~w~~~~   84 (88)
T COG5194          79 TWVLAD   84 (88)
T ss_pred             eeEEec
Confidence            999863

>KOG2930|consensus

Probab=99.81  E-value=4.6e-21  Score=145.93  Aligned_cols=82  Identities=35%  Similarity=1.002  Sum_probs=77.6

Q ss_pred             CCCCCccccccccceecccCCCcccccccccccccCCCCCCC----CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCC
Q psy14827        135 ATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP----GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCP  210 (220)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p----~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCP  210 (220)
                      .+++|++++|.++++|.|+...+.|+||...+.+.|++|+..    .++|.++|+.|+|.||.+||.+||++   +..||
T Consensus        25 ~~krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt---r~vCP  101 (114)
T KOG2930|consen   25 GKKRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT---RNVCP  101 (114)
T ss_pred             CCcceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh---cCcCC
Confidence            367899999999999999999999999999999999999876    46789999999999999999999999   99999


Q ss_pred             CcCcccccc
Q psy14827        211 MCRQEWKFK  219 (220)
Q Consensus       211 vCR~e~~~~  219 (220)
                      +|.++|.|+
T Consensus       102 Ldn~eW~~q  110 (114)
T KOG2930|consen  102 LDNKEWVFQ  110 (114)
T ss_pred             CcCcceeEe
Confidence            999999997

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.80  E-value=1.5e-20  Score=136.19  Aligned_cols=73  Identities=47%  Similarity=1.264  Sum_probs=66.7

Q ss_pred             CCccccccccceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827        138 FNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR  213 (220)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR  213 (220)
                      +|++++|.+++.|.|+..++.|+||+++|.+.+.+++.++++++++++.|||.||.+||..||..   +.+||+||
T Consensus         1 ~~~i~~~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR   73 (73)
T PF12678_consen    1 KFKIKKWNAVALWSWDIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---NNTCPLCR   73 (73)
T ss_dssp             SEEEEEEEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---SSB-TTSS
T ss_pred             CeEEEEEEEEEEEeecCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---CCcCCCCC
Confidence            36789999999999999999999999999999999999988899999999999999999999999   88999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.50  E-value=7.8e-15  Score=95.82  Aligned_cols=44  Identities=43%  Similarity=0.978  Sum_probs=36.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR  213 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR  213 (220)
                      +.|+||+++|...          ..++.+.|||+||.+||..|++.   +.+||+||
T Consensus         1 d~C~IC~~~~~~~----------~~~~~l~C~H~fh~~Ci~~~~~~---~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDG----------EKVVKLPCGHVFHRSCIKEWLKR---NNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTT----------SCEEEETTSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred             CCCcCCChhhcCC----------CeEEEccCCCeeCHHHHHHHHHh---CCcCCccC
Confidence            3699999999762          24555569999999999999999   88999997

...

>KOG0317|consensus

Probab=99.45  E-value=1e-14  Score=129.01  Aligned_cols=47  Identities=28%  Similarity=0.849  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+..|.||||...+            |..++ |||+|||.||..|+..   +.+||+||+.+.
T Consensus       238 a~~kC~LCLe~~~~------------pSaTp-CGHiFCWsCI~~w~~e---k~eCPlCR~~~~  284 (293)
T KOG0317|consen  238 ATRKCSLCLENRSN------------PSATP-CGHIFCWSCILEWCSE---KAECPLCREKFQ  284 (293)
T ss_pred             CCCceEEEecCCCC------------CCcCc-CcchHHHHHHHHHHcc---ccCCCcccccCC
Confidence            45799999999866            67777 9999999999999999   999999999764

>KOG4628|consensus

Probab=99.34  E-value=3.7e-13  Score=122.71  Aligned_cols=47  Identities=36%  Similarity=0.811  Sum_probs=39.6

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      .|+||||+|+.++..+.          +.|+|.||..||++||..+  +..||+|+++.
T Consensus       231 ~CaIClEdY~~GdklRi----------LPC~H~FH~~CIDpWL~~~--r~~CPvCK~di  277 (348)
T KOG4628|consen  231 TCAICLEDYEKGDKLRI----------LPCSHKFHVNCIDPWLTQT--RTFCPVCKRDI  277 (348)
T ss_pred             eEEEeecccccCCeeeE----------ecCCCchhhccchhhHhhc--CccCCCCCCcC
Confidence            89999999999644433          4499999999999999983  67799999864

>KOG0823|consensus

Probab=99.26  E-value=2.8e-12  Score=110.63  Aligned_cols=52  Identities=29%  Similarity=0.700  Sum_probs=45.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ..-+|.|||+.-++            |++++ |||+|||.||-+||....++..||||+.++.-.
T Consensus        46 ~~FdCNICLd~akd------------PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   46 GFFDCNICLDLAKD------------PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CceeeeeeccccCC------------CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            44689999999988            89998 999999999999999877789999999987543

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.26  E-value=3.3e-12  Score=111.56  Aligned_cols=57  Identities=26%  Similarity=0.586  Sum_probs=43.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .+..|+||++.+.+....     ...-.+++.|+|+||..||..|++.   +.+||+||.++.+.
T Consensus       173 ~~~eC~ICle~~~~~~~~-----~~~~~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~~v  229 (238)
T PHA02929        173 KDKECAICMEKVYDKEIK-----NMYFGILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFISV  229 (238)
T ss_pred             CCCCCccCCcccccCccc-----cccceecCCCCCcccHHHHHHHHhc---CCCCCCCCCEeeEE
Confidence            357899999998662100     0001345569999999999999998   99999999988653

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.10  E-value=7.7e-11  Score=99.81  Aligned_cols=51  Identities=31%  Similarity=0.699  Sum_probs=40.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-------------CCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-------------QVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-------------~~~~sCPvCR~e~~~  218 (220)
                      .+-.|+||++.+++            |+++. |||+||+.||..|+...             .+...||+||.++..
T Consensus        17 ~~~~CpICld~~~d------------PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         17 GDFDCNICLDQVRD------------PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CccCCccCCCcCCC------------cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            34689999999977            66655 99999999999998631             125689999998753

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.09  E-value=5.4e-11  Score=75.80  Aligned_cols=39  Identities=38%  Similarity=0.960  Sum_probs=33.9

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      |+||++.+.+            +++.+.|||+||..||.+|++.   +..||+|
T Consensus         1 C~iC~~~~~~------------~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD------------PVVVTPCGHSFCKECIEKYLEK---NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS------------EEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred             CCCCCCcccC------------cCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence            8999999977            7777889999999999999999   8999998

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.08  E-value=1.2e-10  Score=73.94  Aligned_cols=45  Identities=42%  Similarity=0.938  Sum_probs=37.7

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      .|+||++.+..            +..++.|||.||..|+..|++.  ++..||+||..+
T Consensus         1 ~C~iC~~~~~~------------~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFRE------------PVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhC------------ceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCcC
Confidence            49999999844            5666669999999999999987  377899999864

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.2e-10  Score=106.64  Aligned_cols=61  Identities=34%  Similarity=0.732  Sum_probs=44.9

Q ss_pred             CCCcccccccccccccCCCCCCC--CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLP--GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p--~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ..|..|+||++++-.... -++|  .+..|-.++ |||+||.+|+..|+..   ..+||+||.++-|.
T Consensus       285 n~D~~C~ICmde~~h~~~-~~~~~~~~~~pKrLp-CGHilHl~CLknW~ER---qQTCPICr~p~ifd  347 (491)
T COG5243         285 NSDRTCTICMDEMFHPDH-EPLPRGLDMTPKRLP-CGHILHLHCLKNWLER---QQTCPICRRPVIFD  347 (491)
T ss_pred             CCCCeEEEecccccCCCC-ccCcccccCCccccc-ccceeeHHHHHHHHHh---ccCCCcccCccccc
Confidence            456899999999544221 1122  122344444 9999999999999999   99999999998775

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.00  E-value=2.6e-10  Score=76.34  Aligned_cols=46  Identities=33%  Similarity=0.727  Sum_probs=37.8

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +..|.||++...+             .+...|||. |+..|+..|++.   ...||+||++++
T Consensus         2 ~~~C~iC~~~~~~-------------~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD-------------VVLLPCGHLCFCEECAERLLKR---KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS-------------EEEETTCEEEEEHHHHHHHHHT---TSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc-------------eEEeCCCChHHHHHHhHHhccc---CCCCCcCChhhc
Confidence            3679999999755             444459999 999999999998   999999999875

...

>PHA02926 zinc finger-like protein; Provisional

Probab=98.96  E-value=5.1e-10  Score=96.45  Aligned_cols=61  Identities=28%  Similarity=0.654  Sum_probs=43.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR~e~~~~  219 (220)
                      .+..|+||||.+-+..    .+++--..++..|+|.||..||..|.+..   .....||+||..+.|.
T Consensus       169 kE~eCgICmE~I~eK~----~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I  232 (242)
T PHA02926        169 KEKECGICYEVVYSKR----LENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI  232 (242)
T ss_pred             CCCCCccCcccccccc----ccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence            4578999999975521    11111134566799999999999999862   1245699999998875

>KOG0320|consensus

Probab=98.95  E-value=3.3e-10  Score=94.44  Aligned_cols=49  Identities=29%  Similarity=0.603  Sum_probs=41.5

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ...|+|||+.|...           ..+.++|||+||..||..-++.   ...||+||..+.-
T Consensus       131 ~~~CPiCl~~~sek-----------~~vsTkCGHvFC~~Cik~alk~---~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  131 TYKCPICLDSVSEK-----------VPVSTKCGHVFCSQCIKDALKN---TNKCPTCRKKITH  179 (187)
T ss_pred             ccCCCceecchhhc-----------cccccccchhHHHHHHHHHHHh---CCCCCCcccccch
Confidence            36899999999772           3366789999999999999999   8999999976543

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.5e-10  Score=100.49  Aligned_cols=48  Identities=38%  Similarity=0.816  Sum_probs=39.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      -.|+|||++|.-+        +  ..+.+.|.|.||..||.+|+...  +..||+||.++
T Consensus       324 veCaICms~fiK~--------d--~~~vlPC~H~FH~~Cv~kW~~~y--~~~CPvCrt~i  371 (374)
T COG5540         324 VECAICMSNFIKN--------D--RLRVLPCDHRFHVGCVDKWLLGY--SNKCPVCRTAI  371 (374)
T ss_pred             ceEEEEhhhhccc--------c--eEEEeccCceechhHHHHHHhhh--cccCCccCCCC
Confidence            5799999999542        2  36666699999999999999842  88999999875

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.85  E-value=1.5e-09  Score=70.66  Aligned_cols=41  Identities=29%  Similarity=0.771  Sum_probs=30.0

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCC-CCCCCc
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVH-HQCPMC  212 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~-~sCPvC  212 (220)
                      |+||++.|++            |+.+ .|||+|+..||..|.+...+. ..||+|
T Consensus         1 CpiC~~~~~~------------Pv~l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD------------PVSL-PCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS------------EEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC------------cccc-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999987            5554 599999999999999874322 689998

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.83  E-value=2e-09  Score=68.78  Aligned_cols=41  Identities=39%  Similarity=1.022  Sum_probs=35.4

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      |+||++.+.+            +..++.|||.||..||..|++. .+...||+|
T Consensus         1 C~iC~~~~~~------------~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED------------PVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS------------EEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred             CCcCCccccC------------CCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence            8999999977            4557779999999999999994 348889998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00504 Ubox Modified RING finger domain

Probab=98.82  E-value=3.6e-09  Score=73.10  Aligned_cols=45  Identities=24%  Similarity=0.453  Sum_probs=39.4

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .|+||++.|++            |++. .|||+|+..||..|++.   +..||+|+.++..
T Consensus         3 ~Cpi~~~~~~~------------Pv~~-~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~   47 (63)
T smart00504        3 LCPISLEVMKD------------PVIL-PSGQTYERRAIEKWLLS---HGTDPVTGQPLTH   47 (63)
T ss_pred             CCcCCCCcCCC------------CEEC-CCCCEEeHHHHHHHHHH---CCCCCCCcCCCCh
Confidence            59999999977            6555 59999999999999998   8899999998754

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.4e-09  Score=94.15  Aligned_cols=53  Identities=26%  Similarity=0.589  Sum_probs=43.3

Q ss_pred             eecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH-HHHhCCCCCC-CCCcCccccc
Q psy14827        149 TWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK-WLNSQQVHHQ-CPMCRQEWKF  218 (220)
Q Consensus       149 ~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~-WL~~~~~~~s-CPvCR~e~~~  218 (220)
                      .++. ..+.+|+||++....            |+.++ |||+||+.||.. |-..   +.. ||+||+...-
T Consensus       209 pfip-~~d~kC~lC~e~~~~------------ps~t~-CgHlFC~~Cl~~~~t~~---k~~~CplCRak~~p  263 (271)
T COG5574         209 PFIP-LADYKCFLCLEEPEV------------PSCTP-CGHLFCLSCLLISWTKK---KYEFCPLCRAKVYP  263 (271)
T ss_pred             Cccc-ccccceeeeecccCC------------ccccc-ccchhhHHHHHHHHHhh---ccccCchhhhhccc
Confidence            3444 567899999999866            67777 999999999999 9888   666 9999996543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.73  E-value=8.8e-09  Score=67.30  Aligned_cols=44  Identities=27%  Similarity=0.696  Sum_probs=35.7

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      .|.||++.|.+          ..+..++.|||+|+..||..+...   ...||+||+
T Consensus         1 ~C~~C~~~~~~----------~~~~~l~~CgH~~C~~C~~~~~~~---~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSE----------ERRPRLTSCGHIFCEKCLKKLKGK---SVKCPICRK   44 (44)
T ss_pred             CCcCcCccccC----------CCCeEEcccCCHHHHHHHHhhcCC---CCCCcCCCC
Confidence            49999999932          224666779999999999999844   789999985

>smart00184 RING Ring finger

Probab=98.72  E-value=1.1e-08  Score=62.54  Aligned_cols=39  Identities=41%  Similarity=0.928  Sum_probs=31.0

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      |+||++....             .+.+.|||.||..||..|+..  ++..||+|
T Consensus         1 C~iC~~~~~~-------------~~~~~C~H~~c~~C~~~~~~~--~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKD-------------PVVLPCGHTFCRSCIRKWLKS--GNNTCPIC   39 (39)
T ss_pred             CCcCccCCCC-------------cEEecCCChHHHHHHHHHHHh--CcCCCCCC
Confidence            7899888433             344459999999999999983  27789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.62  E-value=2e-08  Score=93.72  Aligned_cols=45  Identities=38%  Similarity=0.863  Sum_probs=39.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.|.+            |++ +.|||.||..||..|+..   ...||+||.++.
T Consensus        27 l~C~IC~d~~~~------------Pvi-tpCgH~FCs~CI~~~l~~---~~~CP~Cr~~~~   71 (397)
T TIGR00599        27 LRCHICKDFFDV------------PVL-TSCSHTFCSLCIRRCLSN---QPKCPLCRAEDQ   71 (397)
T ss_pred             cCCCcCchhhhC------------ccC-CCCCCchhHHHHHHHHhC---CCCCCCCCCccc
Confidence            589999999976            554 459999999999999998   779999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0802|consensus

Probab=98.59  E-value=2e-08  Score=97.09  Aligned_cols=50  Identities=28%  Similarity=0.696  Sum_probs=40.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE  215 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e  215 (220)
                      .++.|+||+|++..+..        .....+.|||+||..|+..|++.   ..+||+||..
T Consensus       290 ~~~~C~IC~e~l~~~~~--------~~~~rL~C~Hifh~~CL~~W~er---~qtCP~CR~~  339 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHN--------ITPKRLPCGHIFHDSCLRSWFER---QQTCPTCRTV  339 (543)
T ss_pred             cCCeeeeechhhccccc--------cccceeecccchHHHHHHHHHHH---hCcCCcchhh
Confidence            46899999999977311        11233349999999999999999   9999999983

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.49  E-value=8.2e-08  Score=85.80  Aligned_cols=46  Identities=30%  Similarity=0.611  Sum_probs=40.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..|-||-+-|..            |..++ |||.||.-||...|.+   ++.||+||.++.|
T Consensus        26 lrC~IC~~~i~i------------p~~Tt-CgHtFCslCIR~hL~~---qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISI------------PCETT-CGHTFCSLCIRRHLGT---QPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeec------------ceecc-cccchhHHHHHHHhcC---CCCCccccccHHh
Confidence            469999999977            45554 9999999999999999   9999999998765

>KOG2164|consensus

Probab=98.49  E-value=6.3e-08  Score=91.81  Aligned_cols=51  Identities=31%  Similarity=0.651  Sum_probs=41.2

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQEWKFK  219 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e~~~~  219 (220)
                      +..|+|||+....            |..+. |||+||+.||..++...  .+-..||+||..+..+
T Consensus       186 ~~~CPICL~~~~~------------p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSV------------PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCc------------ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            6789999999855            55555 99999999999999772  2467899999877553

>KOG0287|consensus

Probab=98.48  E-value=9.3e-08  Score=86.95  Aligned_cols=43  Identities=42%  Similarity=0.835  Sum_probs=39.2

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      .|.||.+-|..            |+.++ |||.||.-||+.+|..   ++.||.|+.++
T Consensus        25 RC~IC~eyf~i------------p~itp-CsHtfCSlCIR~~L~~---~p~CP~C~~~~   67 (442)
T KOG0287|consen   25 RCGICFEYFNI------------PMITP-CSHTFCSLCIRKFLSY---KPQCPTCCVTV   67 (442)
T ss_pred             HHhHHHHHhcC------------ceecc-ccchHHHHHHHHHhcc---CCCCCceeccc
Confidence            59999999977            66666 9999999999999999   99999999865

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.43  E-value=1.6e-07  Score=61.52  Aligned_cols=42  Identities=29%  Similarity=0.729  Sum_probs=22.7

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-CCCCCCC
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-QVHHQCP  210 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-~~~~sCP  210 (220)
                      |+||+| |.+         ++.+.+++.|||+|+.+||..++... .+...||
T Consensus         1 CpIc~e-~~~---------~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FST---------EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----T---------TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccC---------CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 855         23345555699999999999999862 1355666

>KOG1734|consensus

Probab=98.42  E-value=5.3e-08  Score=86.14  Aligned_cols=62  Identities=24%  Similarity=0.570  Sum_probs=44.7

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .++..|+||-..+.+...+   .+--..+-.+.|+|+||..||..|... ..+++||.|+..++.|
T Consensus       222 l~d~vCaVCg~~~~~s~~e---egvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDE---EGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecch---hhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHHhhHh
Confidence            3567899999988763210   000013455679999999999999976 4589999999877654

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.37  E-value=1.5e-07  Score=94.48  Aligned_cols=58  Identities=34%  Similarity=0.917  Sum_probs=47.2

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .-+.||||...+..  .++.+|..-|    +.|+|-||..|+-+|++. .++.+||+||.++-|.
T Consensus      1468 G~eECaICYsvL~~--vdr~lPskrC----~TCknKFH~~CLyKWf~S-s~~s~CPlCRseitfv 1525 (1525)
T COG5219        1468 GHEECAICYSVLDM--VDRSLPSKRC----ATCKNKFHTRCLYKWFAS-SARSNCPLCRSEITFV 1525 (1525)
T ss_pred             CcchhhHHHHHHHH--HhccCCcccc----chhhhhhhHHHHHHHHHh-cCCCCCCccccccccC
Confidence            34789999988753  3566774433    449999999999999998 6799999999999884

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.24  E-value=2.2e-07  Score=66.73  Aligned_cols=55  Identities=27%  Similarity=0.652  Sum_probs=26.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceec---CCCCcchHHHHHHHHHhCC-----C---CCCCCCcCcccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWG---QCSHCFHIHCIMKWLNSQQ-----V---HHQCPMCRQEWKFK  219 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~---~CgHvFH~~CI~~WL~~~~-----~---~~sCPvCR~e~~~~  219 (220)
                      ..|.||+..+.+        ++..|.++-   .|++.||..|+..||+...     .   ...||.|+.++..+
T Consensus         3 ~~C~IC~~~~~~--------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    3 LECGICYSYRLD--------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             -S-SSS--SS-T--------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCcCCcEecC--------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            579999998753        122233332   6999999999999998521     1   23599999987654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.15  E-value=1.8e-06  Score=57.93  Aligned_cols=43  Identities=30%  Similarity=0.813  Sum_probs=31.7

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCC-----CcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCS-----HCFHIHCIMKWLNSQQVHHQCPMCR  213 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-----HvFH~~CI~~WL~~~~~~~sCPvCR  213 (220)
                      |-||++...+          +.+++.+ |.     |+||..|+..|+.. .++.+||+|+
T Consensus         2 CrIC~~~~~~----------~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~-~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDE----------GDPLVSP-CRCKGSLKYVHQECLERWINE-SGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCC----------CCeeEec-cccCCchhHHHHHHHHHHHHH-cCCCcCCCCC
Confidence            8999982222          3345444 75     99999999999987 3466999995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0804|consensus

Probab=98.11  E-value=8.1e-07  Score=83.26  Aligned_cols=45  Identities=36%  Similarity=0.887  Sum_probs=36.4

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      -.+|+||||.+...         -..+++..|.|.||..|+..|-..     +|||||.
T Consensus       175 LPTCpVCLERMD~s---------~~gi~t~~c~Hsfh~~cl~~w~~~-----scpvcR~  219 (493)
T KOG0804|consen  175 LPTCPVCLERMDSS---------TTGILTILCNHSFHCSCLMKWWDS-----SCPVCRY  219 (493)
T ss_pred             CCCcchhHhhcCcc---------ccceeeeecccccchHHHhhcccC-----cChhhhh
Confidence            36899999999762         124555569999999999999766     8999996

>KOG2177|consensus

Probab=98.08  E-value=1.4e-06  Score=73.70  Aligned_cols=44  Identities=34%  Similarity=0.749  Sum_probs=37.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      +.-.|+||++.|..            | .++.|||.||..||..++..   ...||.||.
T Consensus        12 ~~~~C~iC~~~~~~------------p-~~l~C~H~~c~~C~~~~~~~---~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFRE------------P-VLLPCGHNFCRACLTRSWEG---PLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhc------------C-ccccccchHhHHHHHHhcCC---CcCCcccCC
Confidence            34689999999987            5 55569999999999999884   789999993

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.08  E-value=2.2e-06  Score=61.74  Aligned_cols=47  Identities=21%  Similarity=0.365  Sum_probs=36.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      -.|+|+.+-|.+            |+++. +||+|...||..|+..  +..+||+|++.+..
T Consensus         5 f~CpIt~~lM~d------------PVi~~-~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    5 FLCPITGELMRD------------PVILP-SGHTYERSAIERWLEQ--NGGTDPFTRQPLSE   51 (73)
T ss_dssp             GB-TTTSSB-SS------------EEEET-TSEEEEHHHHHHHHCT--TSSB-TTT-SB-SG
T ss_pred             cCCcCcCcHhhC------------ceeCC-cCCEEcHHHHHHHHHc--CCCCCCCCCCcCCc
Confidence            579999999988            67766 9999999999999988  48999999987653

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0828|consensus

Probab=98.03  E-value=2.2e-06  Score=81.34  Aligned_cols=60  Identities=22%  Similarity=0.645  Sum_probs=39.7

Q ss_pred             CCcccccccccccccCCCCC-CCCCCC---CceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCK-LPGDDC---PLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~-~p~~~~---~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      ...+|+||+.+++.-...-. ++....   --..+.|.|+||..|+..|...-  +-.||+||.++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--kl~CPvCR~pL  633 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--KLICPVCRCPL  633 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--cccCCccCCCC
Confidence            34689999999864211110 110000   12334699999999999999951  66999999875

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.01  E-value=8.9e-07  Score=62.63  Aligned_cols=43  Identities=33%  Similarity=0.787  Sum_probs=22.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      -.|.+|.+-++.            |+.++.|.|+||+.||.+-+..     .||+|+.+-
T Consensus         8 LrCs~C~~~l~~------------pv~l~~CeH~fCs~Ci~~~~~~-----~CPvC~~Pa   50 (65)
T PF14835_consen    8 LRCSICFDILKE------------PVCLGGCEHIFCSSCIRDCIGS-----ECPVCHTPA   50 (65)
T ss_dssp             TS-SSS-S--SS-------------B---SSS--B-TTTGGGGTTT-----B-SSS--B-
T ss_pred             cCCcHHHHHhcC------------CceeccCccHHHHHHhHHhcCC-----CCCCcCChH
Confidence            369999999977            7888889999999999885444     599999763

>KOG0825|consensus

Probab=97.99  E-value=1.6e-06  Score=85.79  Aligned_cols=48  Identities=21%  Similarity=0.527  Sum_probs=41.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|++||..|.++.+..+.+          |+|+||.+||..|.+.   ..+||+||.+|.
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~----------c~H~FC~~Ci~sWsR~---aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKH----------TAHYFCEECVGSWSRC---AQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccc----------cccccHHHHhhhhhhh---cccCchhhhhhh
Confidence            67999999998864444444          9999999999999999   999999999874

>KOG0978|consensus

Probab=97.76  E-value=1e-05  Score=80.04  Aligned_cols=46  Identities=22%  Similarity=0.723  Sum_probs=39.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      -.|++|-..+++             .+..+|||+||..||..-+...  ...||.|...|.
T Consensus       644 LkCs~Cn~R~Kd-------------~vI~kC~H~FC~~Cvq~r~etR--qRKCP~Cn~aFg  689 (698)
T KOG0978|consen  644 LKCSVCNTRWKD-------------AVITKCGHVFCEECVQTRYETR--QRKCPKCNAAFG  689 (698)
T ss_pred             eeCCCccCchhh-------------HHHHhcchHHHHHHHHHHHHHh--cCCCCCCCCCCC
Confidence            479999999887             4555699999999999999874  788999999874

>KOG0311|consensus

Probab=97.70  E-value=6e-06  Score=75.55  Aligned_cols=47  Identities=32%  Similarity=0.696  Sum_probs=39.8

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      +-.|+|||+-++.            ...+..|.|-||.+||..-++.  ++++||.||+..
T Consensus        43 ~v~c~icl~llk~------------tmttkeClhrfc~~ci~~a~r~--gn~ecptcRk~l   89 (381)
T KOG0311|consen   43 QVICPICLSLLKK------------TMTTKECLHRFCFDCIWKALRS--GNNECPTCRKKL   89 (381)
T ss_pred             hhccHHHHHHHHh------------hcccHHHHHHHHHHHHHHHHHh--cCCCCchHHhhc
Confidence            3579999999976            4555679999999999999987  699999999854

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.63  E-value=2.2e-05  Score=54.31  Aligned_cols=43  Identities=26%  Similarity=0.628  Sum_probs=31.6

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM  211 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv  211 (220)
                      +..|+|.+..|++            |+....|||+|-...|..||+. .+...||+
T Consensus        11 ~~~CPiT~~~~~~------------PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFED------------PVKSKKCGHTFEKEAILQYIQR-NGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SS------------EEEESSS--EEEHHHHHHHCTT-TS-EE-SC
T ss_pred             ccCCCCcCChhhC------------CcCcCCCCCeecHHHHHHHHHh-cCCCCCCC
Confidence            3689999999988            7888889999999999999944 45889999

>KOG4445|consensus

Probab=97.41  E-value=5.8e-05  Score=68.03  Aligned_cols=55  Identities=29%  Similarity=0.754  Sum_probs=42.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh--------------------CCCCCCCCCcCc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS--------------------QQVHHQCPMCRQ  214 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~--------------------~~~~~sCPvCR~  214 (220)
                      ....|.|||--|.++          -....+.|-|.||..|+.++|..                    .+....|||||.
T Consensus       114 p~gqCvICLygfa~~----------~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre  183 (368)
T KOG4445|consen  114 PNGQCVICLYGFASS----------PAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRE  183 (368)
T ss_pred             CCCceEEEEEeecCC----------CceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhh
Confidence            447899999999773          13555669999999999998863                    024678999998


Q ss_pred             ccccc
Q psy14827        215 EWKFK  219 (220)
Q Consensus       215 e~~~~  219 (220)
                      .+.+.
T Consensus       184 ~i~~e  188 (368)
T KOG4445|consen  184 RIKIE  188 (368)
T ss_pred             hcccc
Confidence            87654

>KOG4172|consensus

Probab=97.39  E-value=5.2e-05  Score=52.15  Aligned_cols=46  Identities=30%  Similarity=0.624  Sum_probs=34.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +.|+||+|.-.+             .++-.|||. .|.+|-.+-++.  .+..||+||++++
T Consensus         8 dECTICye~pvd-------------sVlYtCGHMCmCy~Cg~rl~~~--~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVD-------------SVLYTCGHMCMCYACGLRLKKA--LHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcch-------------HHHHHcchHHhHHHHHHHHHHc--cCCcCcchhhHHH
Confidence            789999887544             344459996 577887766663  3999999999764

>KOG0297|consensus

Probab=97.36  E-value=7.7e-05  Score=69.75  Aligned_cols=48  Identities=33%  Similarity=0.812  Sum_probs=41.3

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+-.|+||...+.+            |+....|||.||..||..|++.   +..||.|+++..
T Consensus        20 ~~l~C~~C~~vl~~------------p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~   67 (391)
T KOG0297|consen   20 ENLLCPICMSVLRD------------PVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELT   67 (391)
T ss_pred             ccccCccccccccC------------CCCCCCCCCcccccccchhhcc---CcCCcccccccc
Confidence            34689999999988            5665569999999999999999   999999988643

>KOG1039|consensus

Probab=97.35  E-value=0.00013  Score=67.30  Aligned_cols=60  Identities=28%  Similarity=0.696  Sum_probs=42.3

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCC----CCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ----VHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~----~~~sCPvCR~e~~~~  219 (220)
                      .+..|.||++.+.+.. ..    ...-..++.|.|.||..||..|-...+    -...||.||..-+|.
T Consensus       160 ~~k~CGICme~i~ek~-~~----~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  160 SEKECGICMETINEKA-AS----ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             ccccceehhhhccccc-hh----hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            4679999999997732 00    000112356999999999999985421    158999999977764

>PHA02862 5L protein; Provisional

Probab=97.22  E-value=0.00026  Score=57.71  Aligned_cols=50  Identities=26%  Similarity=0.674  Sum_probs=38.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCC---CCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQC---SHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~C---gHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      +.|-||+++-++..    -|        ..|   -..-|.+|+..|+.. +++..|++|+.+|.++
T Consensus         3 diCWIC~~~~~e~~----~P--------C~C~GS~K~VHq~CL~~WIn~-S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          3 DICWICNDVCDERN----NF--------CGCNEEYKVVHIKCMQLWINY-SKKKECNLCKTKYNIK   55 (156)
T ss_pred             CEEEEecCcCCCCc----cc--------ccccCcchhHHHHHHHHHHhc-CCCcCccCCCCeEEEE
Confidence            67999999864421    11        123   457899999999976 6799999999999876

>KOG4265|consensus

Probab=97.19  E-value=0.00026  Score=65.01  Aligned_cols=46  Identities=26%  Similarity=0.525  Sum_probs=36.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ...|.|||.+-++             ++++.|.|. .|..|...---.   .+.||+||+.+.
T Consensus       290 gkeCVIClse~rd-------------t~vLPCRHLCLCs~Ca~~Lr~q---~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRD-------------TVVLPCRHLCLCSGCAKSLRYQ---TNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcc-------------eEEecchhhehhHhHHHHHHHh---hcCCCccccchH
Confidence            4689999999887             445559996 688898765444   788999999763

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.17  E-value=0.00015  Score=62.10  Aligned_cols=43  Identities=30%  Similarity=0.799  Sum_probs=37.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE  215 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e  215 (220)
                      -.|.||..+|+.            |+++. |||.||..|...=++.   ...|-+|.++
T Consensus       197 F~C~iCKkdy~s------------pvvt~-CGH~FC~~Cai~~y~k---g~~C~~Cgk~  239 (259)
T COG5152         197 FLCGICKKDYES------------PVVTE-CGHSFCSLCAIRKYQK---GDECGVCGKA  239 (259)
T ss_pred             eeehhchhhccc------------hhhhh-cchhHHHHHHHHHhcc---CCcceecchh
Confidence            379999999987            67776 9999999999888877   8999999764

>KOG1645|consensus

Probab=97.15  E-value=0.00021  Score=66.71  Aligned_cols=37  Identities=38%  Similarity=0.767  Sum_probs=31.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN  201 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~  201 (220)
                      ..|+|||+.|.-       + .++.++.+.|||.|...||..||-
T Consensus         5 ~tcpiclds~~~-------~-g~hr~vsl~cghlFgs~cie~wl~   41 (463)
T KOG1645|consen    5 TTCPICLDSYTT-------A-GNHRIVSLQCGHLFGSQCIEKWLG   41 (463)
T ss_pred             ccCceeeeeeee-------c-CceEEeeecccccccHHHHHHHHh
Confidence            579999999976       2 345688889999999999999994

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=97.05  E-value=0.00056  Score=56.53  Aligned_cols=52  Identities=23%  Similarity=0.715  Sum_probs=39.1

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCC---cchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSH---CFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgH---vFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .+..|-||.++-.+            ....-.|..   .-|.+|+..|+.. ++...|++|+++|.++
T Consensus         7 ~~~~CRIC~~~~~~------------~~~PC~CkGs~k~VH~sCL~rWi~~-s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          7 MDKCCWICKDEYDV------------VTNYCNCKNENKIVHKECLEEWINT-SKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCeeEecCCCCCC------------ccCCcccCCCchHHHHHHHHHHHhc-CCCCcccccCCeEEEE
Confidence            45789999887432            111234666   5699999999987 5789999999998875

>KOG1785|consensus

Probab=96.90  E-value=0.00025  Score=66.24  Aligned_cols=48  Identities=29%  Similarity=0.664  Sum_probs=37.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      =..|-||-|.=++            .-.. .|||..|..|+..|-.. +....||.||.+++
T Consensus       369 FeLCKICaendKd------------vkIE-PCGHLlCt~CLa~WQ~s-d~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  369 FELCKICAENDKD------------VKIE-PCGHLLCTSCLAAWQDS-DEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHHHhhccCCC------------cccc-cccchHHHHHHHhhccc-CCCCCCCceeeEec
Confidence            3679999988766            2222 39999999999999865 34789999999865

>KOG4159|consensus

Probab=96.83  E-value=0.00061  Score=63.96  Aligned_cols=46  Identities=33%  Similarity=0.832  Sum_probs=38.7

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +-.|.||+..+..            |+++ .|||.||..||.+=+..   +..||.||.++.
T Consensus        84 ef~c~vc~~~l~~------------pv~t-pcghs~c~~Cl~r~ld~---~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   84 EFECCVCSRALYP------------PVVT-PCGHSFCLECLDRSLDQ---ETECPLCRDELV  129 (398)
T ss_pred             hhhhhhhHhhcCC------------Cccc-cccccccHHHHHHHhcc---CCCCcccccccc
Confidence            3579999888865            6666 59999999999997776   999999998764

>KOG3970|consensus

Probab=96.71  E-value=0.0014  Score=57.20  Aligned_cols=50  Identities=26%  Similarity=0.575  Sum_probs=37.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-----CCCCCCCCcCccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-----QVHHQCPMCRQEW  216 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-----~~~~sCPvCR~e~  216 (220)
                      +..|.+|--.+..+           ..+.+.|-|+|||.|+..|-..=     -..-.||.|.+++
T Consensus        50 ~pNC~LC~t~La~g-----------dt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   50 NPNCRLCNTPLASG-----------DTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CCCCceeCCccccC-----------cceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            46899998888763           23455599999999999998751     1255799999874

>KOG1952|consensus

Probab=96.43  E-value=0.0045  Score=62.46  Aligned_cols=51  Identities=31%  Similarity=0.694  Sum_probs=36.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC----CCCCCCCCcCc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ----QVHHQCPMCRQ  214 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~----~~~~sCPvCR~  214 (220)
                      ....|.||++.+..-         .....-..|-|+||..||..|.+..    +..=.||-|+.
T Consensus       190 ~~yeCmIC~e~I~~t---------~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  190 RKYECMICTERIKRT---------APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             CceEEEEeeeecccc---------CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            335899999999762         1122223599999999999999862    12456999984

>KOG1813|consensus

Probab=96.42  E-value=0.00098  Score=59.98  Aligned_cols=44  Identities=34%  Similarity=0.628  Sum_probs=38.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      ..|-||...|..            |+++- |||.||..|...-++.   ...|++|.+..
T Consensus       242 f~c~icr~~f~~------------pVvt~-c~h~fc~~ca~~~~qk---~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYR------------PVVTK-CGHYFCEVCALKPYQK---GEKCYVCSQQT  285 (313)
T ss_pred             cccccccccccc------------chhhc-CCceeehhhhcccccc---CCcceeccccc
Confidence            569999999987            66665 9999999999988887   89999998753

>KOG1941|consensus

Probab=96.36  E-value=0.0017  Score=60.60  Aligned_cols=47  Identities=32%  Similarity=0.667  Sum_probs=38.1

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcC
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR  213 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR  213 (220)
                      -.|..|=+.+-..         +..+..+.|.|+||..|+...|.. .+-.+||-||
T Consensus       366 L~Cg~CGe~~Glk---------~e~LqALpCsHIfH~rCl~e~L~~-n~~rsCP~Cr  412 (518)
T KOG1941|consen  366 LYCGLCGESIGLK---------NERLQALPCSHIFHLRCLQEILEN-NGTRSCPNCR  412 (518)
T ss_pred             hhhhhhhhhhcCC---------cccccccchhHHHHHHHHHHHHHh-CCCCCCccHH
Confidence            5799999998652         224556679999999999999976 4678999999

>KOG1428|consensus

Probab=96.07  E-value=0.0037  Score=66.20  Aligned_cols=53  Identities=30%  Similarity=0.676  Sum_probs=38.7

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-------CCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-------QVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-------~~~~sCPvCR~e~~  217 (220)
                      .++.|.||.-+--.          ..|-..+.|+|+||..|...-|...       -+--+||+|.++++
T Consensus      3485 ~DDmCmICFTE~L~----------AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS----------AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cCceEEEEehhhhC----------CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            46889999766433          2355566699999999999877652       02457999998765

>PHA03096 p28-like protein; Provisional

Probab=96.02  E-value=0.0044  Score=55.85  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=36.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCC---CCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQV---HHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~---~~sCPvCR~e~~~  218 (220)
                      -.|.||++......     +.+.-=..+..|.|.||..||..|-.....   .+.||.|+.-..|
T Consensus       179 k~c~ic~e~~~~k~-----~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~  238 (284)
T PHA03096        179 KICGICLENIKAKY-----IIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVF  238 (284)
T ss_pred             hhcccchhhhhhhc-----cccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHH
Confidence            46999999987631     111111233459999999999999976433   4445555544433

>KOG2660|consensus

Probab=95.95  E-value=0.0022  Score=58.42  Aligned_cols=44  Identities=30%  Similarity=0.647  Sum_probs=38.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE  215 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e  215 (220)
                      ..|.+|---|.+            +.....|-|.||..||...|..   ...||.|...
T Consensus        16 itC~LC~GYliD------------ATTI~eCLHTFCkSCivk~l~~---~~~CP~C~i~   59 (331)
T KOG2660|consen   16 ITCRLCGGYLID------------ATTITECLHTFCKSCIVKYLEE---SKYCPTCDIV   59 (331)
T ss_pred             eehhhccceeec------------chhHHHHHHHHHHHHHHHHHHH---hccCCcccee
Confidence            589999999977            4566679999999999999999   9999999764

>KOG2114|consensus

Probab=95.89  E-value=0.0033  Score=63.39  Aligned_cols=43  Identities=30%  Similarity=0.793  Sum_probs=35.6

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      ..+|..|--..+.            |.|--.|||.||.+|+.   ..   ...||-|+.+.
T Consensus       840 ~skCs~C~~~Ldl------------P~VhF~CgHsyHqhC~e---~~---~~~CP~C~~e~  882 (933)
T KOG2114|consen  840 VSKCSACEGTLDL------------PFVHFLCGHSYHQHCLE---DK---EDKCPKCLPEL  882 (933)
T ss_pred             eeeecccCCcccc------------ceeeeecccHHHHHhhc---cC---cccCCccchhh
Confidence            3689999888865            77777799999999998   33   78899998753

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.87  E-value=0.0027  Score=47.69  Aligned_cols=32  Identities=25%  Similarity=0.622  Sum_probs=25.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHH
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIM  197 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~  197 (220)
                      .+..|++|-..+...           +.++.+|||+||..|+.
T Consensus        77 ~~~~C~vC~k~l~~~-----------~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNS-----------VFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCCc-----------eEEEeCCCeEEeccccc
Confidence            346899999999542           66777799999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2879|consensus

Probab=95.68  E-value=0.0093  Score=53.37  Aligned_cols=50  Identities=26%  Similarity=0.592  Sum_probs=37.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+..|++|-+.=..            |-+.++|||+||-.||..=+.. +-..+||.|..+..
T Consensus       238 ~~~~C~~Cg~~Pti------------P~~~~~C~HiyCY~Ci~ts~~~-~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTI------------PHVIGKCGHIYCYYCIATSRLW-DASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCC------------Ceeeccccceeehhhhhhhhcc-hhhcccCccCCCCc
Confidence            45789999776433            6777889999999999876553 22569999987654

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.66  E-value=0.0044  Score=41.08  Aligned_cols=43  Identities=28%  Similarity=0.748  Sum_probs=27.0

Q ss_pred             cccccccccccCCCCCCCCCCCCceec-CCCC---cchHHHHHHHHHhCCCCCCCCCc
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWG-QCSH---CFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgH---vFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      |-||++.-.+.          .+++.+ .|+=   ..|..|+..|+.. .++..|++|
T Consensus         1 CrIC~~~~~~~----------~~li~pC~C~Gs~~~vH~~CL~~W~~~-~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEED----------EPLISPCRCKGSMKYVHRSCLERWIRE-SGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSS----------S-EE-SSS-SSCCGSEECCHHHHHHHH-HT-SB-TTT
T ss_pred             CeEeCCcCCCC----------CceecccccCCCcchhHHHHHHHHHHh-cCCCcCCCC
Confidence            66888887652          133333 3555   7899999999987 347789988

>KOG0826|consensus

Probab=95.55  E-value=0.0096  Score=54.45  Aligned_cols=46  Identities=20%  Similarity=0.498  Sum_probs=38.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE  215 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e  215 (220)
                      ....|+||+.....            |.+...-|-|||..||...+..   ...|||=..+
T Consensus       299 ~~~~CpvClk~r~N------------ptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKRQN------------PTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhccCC------------CceEEecceEEeHHHHHHHHHh---cCCCCccCCc
Confidence            45789999998865            6777768999999999999999   9999985443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.51  E-value=0.011  Score=39.58  Aligned_cols=48  Identities=23%  Similarity=0.550  Sum_probs=22.2

Q ss_pred             cccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       159 CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      |++|.+++..-         +.-..--.||+.++..|...=+..  ....||-||++++
T Consensus         1 cp~C~e~~d~~---------d~~~~PC~Cgf~IC~~C~~~i~~~--~~g~CPgCr~~Y~   48 (48)
T PF14570_consen    1 CPLCDEELDET---------DKDFYPCECGFQICRFCYHDILEN--EGGRCPGCREPYK   48 (48)
T ss_dssp             -TTTS-B--CC---------CTT--SSTTS----HHHHHHHTTS--S-SB-TTT--B--
T ss_pred             CCCcccccccC---------CCccccCcCCCcHHHHHHHHHHhc--cCCCCCCCCCCCC
Confidence            78999998441         222333469999999997766642  3889999999864

>KOG1002|consensus

Probab=95.39  E-value=0.0081  Score=58.16  Aligned_cols=49  Identities=27%  Similarity=0.644  Sum_probs=37.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh--CCCCCCCCCcCccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS--QQVHHQCPMCRQEW  216 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~--~~~~~sCPvCR~e~  216 (220)
                      ....|.+|-++-++            .+.. .|.|.||..||..++..  ...+.+||+|-..+
T Consensus       535 ~~~~C~lc~d~aed------------~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  535 GEVECGLCHDPAED------------YIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             CceeecccCChhhh------------hHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence            34689999998877            4444 49999999999988864  13479999997644

>KOG1571|consensus

Probab=94.87  E-value=0.013  Score=53.99  Aligned_cols=45  Identities=29%  Similarity=0.620  Sum_probs=32.5

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ...+.|.||+++.++             .+...|||+=|  |+.--..    .+.||+||+.+.
T Consensus       303 ~~p~lcVVcl~e~~~-------------~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS-------------AVFVPCGHVCC--CTLCSKH----LPQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccc-------------eeeecCCcEEE--chHHHhh----CCCCchhHHHHH
Confidence            455899999999877             23344999976  6654333    566999998654

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=94.84  E-value=0.013  Score=47.26  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=26.2

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCC------CcchHHHHHHHHHh
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS------HCFHIHCIMKWLNS  202 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg------HvFH~~CI~~WL~~  202 (220)
                      .-.|+||++.+.+        .++ .+.++ ||      |+||.+|+.+|-+.
T Consensus        26 ~~EC~IC~~~I~~--------~~G-vV~vt-~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDN--------NDG-VVYVT-DGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             Ceeehhhhhhhhc--------CCC-EEEEe-cCCeehHHHHHHHHHHHHHHhh
Confidence            3689999999976        111 22222 44      89999999999544

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.81  E-value=0.025  Score=52.35  Aligned_cols=51  Identities=22%  Similarity=0.447  Sum_probs=38.2

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .+...|.||-+.+.-             +.++.|+|..|-.|-.+--.. .....||+||.+|+-
T Consensus        59 Een~~C~ICA~~~TY-------------s~~~PC~H~~CH~Ca~RlRAL-Y~~K~C~~CrTE~e~  109 (493)
T COG5236          59 EENMNCQICAGSTTY-------------SARYPCGHQICHACAVRLRAL-YMQKGCPLCRTETEA  109 (493)
T ss_pred             cccceeEEecCCceE-------------EEeccCCchHHHHHHHHHHHH-HhccCCCccccccce
Confidence            455789999988755             334459999999998764332 238899999999973

>KOG3268|consensus

Probab=94.58  E-value=0.037  Score=46.93  Aligned_cols=34  Identities=35%  Similarity=0.899  Sum_probs=26.9

Q ss_pred             CCCCcchHHHHHHHHHhC----C----CCCCCCCcCcccccc
Q psy14827        186 QCSHCFHIHCIMKWLNSQ----Q----VHHQCPMCRQEWKFK  219 (220)
Q Consensus       186 ~CgHvFH~~CI~~WL~~~----~----~~~sCPvCR~e~~~~  219 (220)
                      +||.-||.-|+..||+.=    +    --..||.|-.++-.|
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            599999999999999851    1    135799999887654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.29  E-value=0.03  Score=50.95  Aligned_cols=44  Identities=27%  Similarity=0.628  Sum_probs=36.1

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      -.|+.|..-...            |..+..|+|.||.+||..-|..  .-..||.|.+
T Consensus       275 LkCplc~~Llrn------------p~kT~cC~~~fc~eci~~al~d--sDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRN------------PMKTPCCGHTFCDECIGTALLD--SDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhC------------cccCccccchHHHHHHhhhhhh--ccccCCCccc
Confidence            689999888766            5555669999999999988865  2789999976

>KOG0309|consensus

Probab=93.90  E-value=0.029  Score=56.36  Aligned_cols=51  Identities=29%  Similarity=0.731  Sum_probs=34.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM  211 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv  211 (220)
                      ..|+||++.+.. |..|.+.-...-.+-+.|+|+-|..|...|+++   ..+||-
T Consensus      1019 ~~~~~~~~~~~~-C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~---gd~Cps 1069 (1081)
T KOG0309|consen 1019 TQCAICKGFTFQ-CAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT---GDVCPS 1069 (1081)
T ss_pred             eeccccccceee-eeeEeeEeeccchhhccccccccHHHHHHHHhc---CCcCCC
Confidence            456677666554 444444322223344559999999999999999   889984

>KOG2034|consensus

Probab=93.44  E-value=0.039  Score=56.16  Aligned_cols=37  Identities=27%  Similarity=0.670  Sum_probs=29.8

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHH
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLN  201 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~  201 (220)
                      ..++.|.+|...+-..           |...-.|||.||++||..-..
T Consensus       815 ep~d~C~~C~~~ll~~-----------pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-----------PFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             cCccchHHhcchhhcC-----------cceeeeccchHHHHHHHHHHH
Confidence            3568999999998662           566667999999999987654

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=93.42  E-value=0.056  Score=50.25  Aligned_cols=31  Identities=29%  Similarity=0.878  Sum_probs=26.0

Q ss_pred             CCCCcchHHHHHHHHHhC----------CCCCCCCCcCccc
Q psy14827        186 QCSHCFHIHCIMKWLNSQ----------QVHHQCPMCRQEW  216 (220)
Q Consensus       186 ~CgHvFH~~CI~~WL~~~----------~~~~sCPvCR~e~  216 (220)
                      .|.-.+|.+|+.+|+..+          .++-.||.||+.|
T Consensus       310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            377788999999999764          2788999999976

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4275|consensus

Probab=93.04  E-value=0.017  Score=52.29  Aligned_cols=41  Identities=32%  Similarity=0.662  Sum_probs=30.2

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      +..|+||++.-.+             =+.+.|||. -|..|-..       -..||+||+.+
T Consensus       300 ~~LC~ICmDaP~D-------------CvfLeCGHmVtCt~CGkr-------m~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRD-------------CVFLECGHMVTCTKCGKR-------MNECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcc-------------eEEeecCcEEeehhhccc-------cccCchHHHHH
Confidence            5789999987655             355669996 46677542       45899999854

>KOG0827|consensus

Probab=92.68  E-value=0.011  Score=55.17  Aligned_cols=50  Identities=26%  Similarity=0.494  Sum_probs=39.5

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ...|+||.+.++..       .+  .+-...|||.+|.+||..||..   +.-||-||+++.
T Consensus       196 v~sl~I~~~slK~~-------y~--k~~~~~~g~~~~~~kL~k~L~~---~~kl~~~~rel~  245 (465)
T KOG0827|consen  196 VGSLSICFESLKQN-------YD--KISAIVCGHIYHHGKLSKWLAT---KRKLPSCRRELP  245 (465)
T ss_pred             HhhhHhhHHHHHHH-------HH--HHHHHhhcccchhhHHHHHHHH---HHHhHHHHhhhh
Confidence            46899999999762       00  1223349999999999999999   889999999864

>PF04641 Rtf2: Rtf2 RING-finger

Probab=92.63  E-value=0.075  Score=47.01  Aligned_cols=48  Identities=17%  Similarity=0.475  Sum_probs=35.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      -.|+|...+|..         ...-+.+..|||||...+|..- ..   ...||+|-.+|.
T Consensus       114 ~~CPvt~~~~~~---------~~~fv~l~~cG~V~s~~alke~-k~---~~~Cp~c~~~f~  161 (260)
T PF04641_consen  114 FICPVTGKEFNG---------KHKFVYLRPCGCVFSEKALKEL-KK---SKKCPVCGKPFT  161 (260)
T ss_pred             eECCCCCcccCC---------ceeEEEEcCCCCEeeHHHHHhh-cc---cccccccCCccc
Confidence            579999999843         1112333469999999999876 22   567999999875

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.42  E-value=0.11  Score=48.04  Aligned_cols=53  Identities=17%  Similarity=0.469  Sum_probs=33.9

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+++-|++|+|++..-+.         -..-..||...|.-|-..- ++ ..+..||-||+.+.
T Consensus        12 deed~cplcie~mditdk---------nf~pc~cgy~ic~fc~~~i-rq-~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDYCPLCIEPMDITDK---------NFFPCPCGYQICQFCYNNI-RQ-NLNGRCPACRRKYD   64 (480)
T ss_pred             cccccCcccccccccccC---------CcccCCcccHHHHHHHHHH-Hh-hccCCChHhhhhcc
Confidence            355779999999976322         2333459987666663321 11 23678999999654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=91.97  E-value=0.061  Score=37.01  Aligned_cols=32  Identities=22%  Similarity=0.520  Sum_probs=25.3

Q ss_pred             eecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        183 VWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       183 ~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      +++.|||+.+..|..-+-     -+-||+|.++|++-
T Consensus        21 ~~~pCgH~I~~~~f~~~r-----YngCPfC~~~~~~~   52 (55)
T PF14447_consen   21 TVLPCGHLICDNCFPGER-----YNGCPFCGTPFEFD   52 (55)
T ss_pred             ccccccceeeccccChhh-----ccCCCCCCCcccCC
Confidence            444599999999987652     45799999998874

>KOG1001|consensus

Probab=91.78  E-value=0.069  Score=53.50  Aligned_cols=45  Identities=27%  Similarity=0.711  Sum_probs=33.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      ..|.||++ ...            ++.+ .|||.||.+|+..-+... ...-||+||..+
T Consensus       455 ~~c~ic~~-~~~------------~~it-~c~h~~c~~c~~~~i~~~-~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-LDS------------FFIT-RCGHDFCVECLKKSIQQS-ENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-ccc------------ceee-cccchHHHHHHHhccccc-cCCCCcHHHHHH
Confidence            57999999 322            3444 499999999999988762 244699999754

>KOG3039|consensus

Probab=91.67  E-value=0.13  Score=45.63  Aligned_cols=49  Identities=16%  Similarity=0.336  Sum_probs=38.4

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      ...|+||.+.+...        -.| .++-.|||||+.+|+.+.++.   -..||||-.+.
T Consensus       221 ryiCpvtrd~LtNt--------~~c-a~Lr~sg~Vv~~ecvEklir~---D~v~pv~d~pl  269 (303)
T KOG3039|consen  221 RYICPVTRDTLTNT--------TPC-AVLRPSGHVVTKECVEKLIRK---DMVDPVTDKPL  269 (303)
T ss_pred             ceecccchhhhcCc--------cce-EEeccCCcEeeHHHHHHhccc---cccccCCCCcC
Confidence            35799999998662        222 233459999999999999998   88999997754

>KOG1814|consensus

Probab=91.52  E-value=0.11  Score=49.01  Aligned_cols=47  Identities=26%  Similarity=0.517  Sum_probs=33.9

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--C---CCCCCCCcC
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--Q---VHHQCPMCR  213 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~---~~~sCPvCR  213 (220)
                      -.|.||+++...         .+ -...+.|+|+||..|+..++...  .   +.-.||-+.
T Consensus       185 f~C~ICf~e~~G---------~~-c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  185 FDCCICFEEQMG---------QH-CFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             ccceeeehhhcC---------cc-eeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            579999999854         22 34455599999999999999863  1   245566553

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=91.00  E-value=0.28  Score=39.64  Aligned_cols=52  Identities=21%  Similarity=0.525  Sum_probs=37.1

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      -.|.||.|.-.+.   +=+-.+++      ||-..|..|-..-.+.-...+.||+|+..|+
T Consensus        81 YeCnIC~etS~ee---~FLKPneC------CgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK  132 (140)
T PF05290_consen   81 YECNICKETSAEE---RFLKPNEC------CGYSICNACYANLWKFCNLYPVCPVCKTSFK  132 (140)
T ss_pred             eeccCcccccchh---hcCCcccc------cchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence            5799999987662   22222344      9999999976655544345999999999764

>KOG4692|consensus

Probab=90.87  E-value=0.17  Score=47.03  Aligned_cols=48  Identities=27%  Similarity=0.561  Sum_probs=37.5

Q ss_pred             cCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       153 ~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      +.++..|+||.-.=-.            . +...|+|.=|..||..-|-.   .+.|=.|+..+
T Consensus       419 ~sEd~lCpICyA~pi~------------A-vf~PC~H~SC~~CI~qHlmN---~k~CFfCktTv  466 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPIN------------A-VFAPCSHRSCYGCITQHLMN---CKRCFFCKTTV  466 (489)
T ss_pred             CcccccCcceecccch------------h-hccCCCCchHHHHHHHHHhc---CCeeeEeccee
Confidence            4678999999654221            2 33449999999999999998   89999998754

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.79  E-value=0.19  Score=51.10  Aligned_cols=54  Identities=33%  Similarity=0.835  Sum_probs=40.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCC-----cchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSH-----CFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE  220 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgH-----vFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~  220 (220)
                      ++..|-||..+=..          +.|+.-+ |+.     ..|.+|+..|+.- ++...|-+|..+++||+
T Consensus        11 d~~~CRICr~e~~~----------d~pLfhP-CKC~GSIkYiH~eCL~eW~~~-s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183          11 DKRSCRICRTEDIR----------DDPLFHP-CKCSGSIKYIHRECLMEWMEC-SGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             cchhceeecCCCCC----------CCcCccc-ccccchhHHHHHHHHHHHHhc-CCCcceeeecceeeeee
Confidence            34789999876433          3355544 443     5899999999985 66889999999999984

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.74  E-value=0.19  Score=32.62  Aligned_cols=25  Identities=28%  Similarity=0.850  Sum_probs=16.3

Q ss_pred             CCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        187 CSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       187 CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      |+=.+|..|+..+++.. ..+.||.|
T Consensus        19 C~~r~H~~C~~~y~r~~-~~~~CP~C   43 (43)
T PF08746_consen   19 CNVRLHDDCFKKYFRHR-SNPKCPNC   43 (43)
T ss_dssp             S--EE-HHHHHHHTTT--SS-B-TTT
T ss_pred             cCchHHHHHHHHHHhcC-CCCCCcCC
Confidence            88899999999999882 23379988

; PDB: 3NW0_A 2CT0_A.

>KOG0298|consensus

Probab=89.78  E-value=0.11  Score=54.78  Aligned_cols=43  Identities=26%  Similarity=0.587  Sum_probs=35.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      -.|.||++.+...           -.+. .|||.||..|+..|+..   +..||.|..
T Consensus      1154 ~~c~ic~dil~~~-----------~~I~-~cgh~~c~~c~~~~l~~---~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQ-----------GGIA-GCGHEPCCRCDELWLYA---SSRCPICKS 1196 (1394)
T ss_pred             cchHHHHHHHHhc-----------CCee-eechhHhhhHHHHHHHH---hccCcchhh
Confidence            3799999999752           1233 39999999999999999   999999975

>KOG1940|consensus

Probab=89.64  E-value=0.23  Score=44.62  Aligned_cols=46  Identities=22%  Similarity=0.486  Sum_probs=36.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ  214 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~  214 (220)
                      ..|+||.+.+-..        .. ....++|||.-|..|+......   +-.||+|.+
T Consensus       159 ~ncPic~e~l~~s--------~~-~~~~~~CgH~~h~~cf~e~~~~---~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLS--------FE-DAGVLKCGHYMHSRCFEEMICE---GYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccc--------cc-cCCccCcccchHHHHHHHHhcc---CCCCCcccc
Confidence            4599999988663        12 3444569999999999998888   699999987

>KOG0801|consensus

Probab=89.30  E-value=0.14  Score=42.76  Aligned_cols=29  Identities=24%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchH
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHI  193 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~  193 (220)
                      ....|.||||+++.++....+          .|-.+||.
T Consensus       176 dkGECvICLEdL~~GdtIARL----------PCLCIYHK  204 (205)
T KOG0801|consen  176 DKGECVICLEDLEAGDTIARL----------PCLCIYHK  204 (205)
T ss_pred             cCCcEEEEhhhccCCCceecc----------ceEEEeec
Confidence            347899999999885444444          49999995

>KOG3899|consensus

Probab=87.55  E-value=0.38  Score=43.74  Aligned_cols=30  Identities=23%  Similarity=0.705  Sum_probs=25.4

Q ss_pred             CCCcchHHHHHHHHHhC----------CCCCCCCCcCccc
Q psy14827        187 CSHCFHIHCIMKWLNSQ----------QVHHQCPMCRQEW  216 (220)
Q Consensus       187 CgHvFH~~CI~~WL~~~----------~~~~sCPvCR~e~  216 (220)
                      |.-.+|.+|+.+|+...          .++-.||+||+.|
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f  364 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF  364 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence            88889999999999653          2689999999976

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=87.53  E-value=0.65  Score=31.86  Aligned_cols=47  Identities=23%  Similarity=0.552  Sum_probs=34.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC--cCcccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM--CRQEWKFK  219 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv--CR~e~~~~  219 (220)
                      ..|.+|-+.|+++         +..++-..||-.||+.|-.   .    ...|-+  |...+.++
T Consensus         6 ~~C~~Cg~~~~~~---------dDiVvCp~CgapyHR~C~~---~----~g~C~~~~c~~~~~~~   54 (54)
T PF14446_consen    6 CKCPVCGKKFKDG---------DDIVVCPECGAPYHRDCWE---K----AGGCINYSCGTGFEWK   54 (54)
T ss_pred             ccChhhCCcccCC---------CCEEECCCCCCcccHHHHh---h----CCceEeccCCCCcccC
Confidence            5799999999763         2256667799999999943   2    566766  77766654

>KOG3053|consensus

Probab=87.27  E-value=0.32  Score=43.41  Aligned_cols=56  Identities=25%  Similarity=0.615  Sum_probs=37.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceec-CC---CCcchHHHHHHHHHhCC-----CCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWG-QC---SHCFHIHCIMKWLNSQQ-----VHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~-~C---gHvFH~~CI~~WL~~~~-----~~~sCPvCR~e~~~  218 (220)
                      .+..|-||+..=+|.-..        ..|-+ .|   .|--|..|+..|+.+++     ...+||.|+.|+-.
T Consensus        19 ~eR~CWiCF~TdeDn~~a--------~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii   83 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLA--------AWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII   83 (293)
T ss_pred             cceeEEEEeccCcccchh--------hhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence            346899998876662111        11222 23   47789999999998732     35689999998754

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=87.20  E-value=0.8  Score=38.06  Aligned_cols=45  Identities=22%  Similarity=0.510  Sum_probs=22.2

Q ss_pred             CcccccccccccccCC-CCCCCCCCCCceecCCCCcc-hHHHHHHHHHh
Q psy14827        156 DDTCGICRIAFEGCCS-DCKLPGDDCPLVWGQCSHCF-HIHCIMKWLNS  202 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~-~~~~p~~~~~~~~~~CgHvF-H~~CI~~WL~~  202 (220)
                      +..|+||||.=-.+.+ .|-.=.+++...+  |+-.| |..|++.+-+.
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpym--c~Ts~rhSNCLdqfkka   48 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM--CDTSYRHSNCLDQFKKA   48 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccc--cCCccchhHHHHHHHHH
Confidence            4579999986432100 0000011111111  54444 78899988764

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2817|consensus

Probab=87.16  E-value=0.5  Score=44.36  Aligned_cols=49  Identities=16%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE  215 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e  215 (220)
                      -.|+|=.+.-.+          +.|...+.||||...+-|.+-.+....+.-||.|=.+
T Consensus       335 F~CPVlKeqtsd----------eNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  335 FICPVLKEQTSD----------ENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             eecccchhhccC----------CCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            579998877654          5677777899999999999987763223789999654

>KOG3002|consensus

Probab=86.63  E-value=0.53  Score=42.81  Aligned_cols=43  Identities=21%  Similarity=0.467  Sum_probs=34.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      -.|+||.+.+..            |+.--.=||+-|..|-.   +.   ...||.||-++-
T Consensus        49 leCPvC~~~l~~------------Pi~QC~nGHlaCssC~~---~~---~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   49 LDCPVCFNPLSP------------PIFQCDNGHLACSSCRT---KV---SNKCPTCRLPIG   91 (299)
T ss_pred             ccCchhhccCcc------------cceecCCCcEehhhhhh---hh---cccCCccccccc
Confidence            579999999966            66665568999999965   23   778999998764

>KOG1812|consensus

Probab=84.59  E-value=0.48  Score=44.41  Aligned_cols=45  Identities=24%  Similarity=0.643  Sum_probs=34.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      ..|++|.-.++-        ..++--++-.|||.|++.|..+|...   +..|..|
T Consensus       307 r~CpkC~~~ie~--------~~GCnhm~CrC~~~fcy~C~~~~~~~---~~~~~~~  351 (384)
T KOG1812|consen  307 RQCPKCKFMIEL--------SEGCNHMTCRCGHQFCYMCGGDWKTH---NGECYEC  351 (384)
T ss_pred             CcCcccceeeee--------cCCcceEEeeccccchhhcCcchhhC---CccccCc
Confidence            579999888865        34566666669999999999999887   6666443

>KOG4718|consensus

Probab=83.66  E-value=0.61  Score=40.52  Aligned_cols=45  Identities=27%  Similarity=0.777  Sum_probs=36.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      -.|.+|.+-.-.            .+.-..||-.||..||...+..   .+.||-|..-|
T Consensus       182 k~Cn~Ch~LvIq------------g~rCg~c~i~~h~~c~qty~q~---~~~cphc~d~w  226 (235)
T KOG4718|consen  182 KNCNLCHCLVIQ------------GIRCGSCNIQYHRGCIQTYLQR---RDICPHCGDLW  226 (235)
T ss_pred             HHHhHhHHHhhe------------eeccCcccchhhhHHHHHHhcc---cCcCCchhccc
Confidence            589999887754            2344569999999999999999   99999996544

>KOG2932|consensus

Probab=82.85  E-value=0.6  Score=42.81  Aligned_cols=27  Identities=30%  Similarity=0.817  Sum_probs=20.0

Q ss_pred             cCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        185 GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       185 ~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      ..|+|+||.+|...  ..   -+.||.|-..+
T Consensus       107 IPCkHvFCl~CAr~--~~---dK~Cp~C~d~V  133 (389)
T KOG2932|consen  107 IPCKHVFCLECARS--DS---DKICPLCDDRV  133 (389)
T ss_pred             cccchhhhhhhhhc--Cc---cccCcCcccHH
Confidence            34999999999753  12   56899996544

>KOG4362|consensus

Probab=82.76  E-value=0.35  Score=48.35  Aligned_cols=48  Identities=27%  Similarity=0.636  Sum_probs=37.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||+..+.+            | +.+.|-|.|+..|+..=+....+...||||+...+
T Consensus        22 lEc~ic~~~~~~------------p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   22 LECPICLEHVKE------------P-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             ccCCceeEEeec------------c-chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            579999999988            4 55569999999998876655323678999996543

>KOG1829|consensus

Probab=81.61  E-value=0.47  Score=46.74  Aligned_cols=29  Identities=28%  Similarity=0.693  Sum_probs=21.2

Q ss_pred             cCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        185 GQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       185 ~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ..||++||..|...   .   ++-||-|-+-++++
T Consensus       535 ~~C~avfH~~C~~r---~---s~~CPrC~R~q~r~  563 (580)
T KOG1829|consen  535 STCLAVFHKKCLRR---K---SPCCPRCERRQKRA  563 (580)
T ss_pred             HHHHHHHHHHHHhc---c---CCCCCchHHHHHHh
Confidence            34999999999653   2   55699997755544

>KOG3039|consensus

Probab=80.67  E-value=1.6  Score=39.00  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=28.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS  202 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~  202 (220)
                      +.|.+||.++.+            |++.. =||+|+.+||...+..
T Consensus        44 dcCsLtLqPc~d------------Pvit~-~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   44 DCCSLTLQPCRD------------PVITP-DGYLFDREAILEYILA   76 (303)
T ss_pred             ceeeeecccccC------------CccCC-CCeeeeHHHHHHHHHH
Confidence            789999999988            66665 8999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
1u6g_B	108	Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le		9e-12
3dqv_R	106	Structural Insights Into Nedd8 Activation Of Cullin		1e-11
4a0k_B	117	Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp		1e-11
3dpl_R	106	Structural Insights Into Nedd8 Activation Of Cullin		1e-11
4a0c_D	98	Structure Of The Cand1-Cul4b-Rbx1 Complex Length =		2e-11
1ldj_B	90	Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu		2e-11
2lgv_A	100	Rbx1 Length = 100		6e-09
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		1e-07

>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 27  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 86
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 87  WLKTRQV---CPLDNREWEFQK 105

>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 106

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 25  WNAVALWAWDIVVDNCAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 84
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 85  WLKTRQV---CPLDNREWEFQK 103

>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 117

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 36  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 95
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 96  WLKTRQV---CPLDNREWEFQK 114

>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation. Length = 106

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 25  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 84
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 85  WLKTRQV---CPLDNREWEFQK 103

>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 98

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 17  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 76
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 77  WLKTRQV---CPLDNREWEFQK 95

>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 90

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 9   WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 68
Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++QV   CP+  +EW+F++
Sbjct: 69  WLKTRQV---CPLDNREWEFQK 87

>pdb|2LGV|A Chain A, Rbx1 Length = 100

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 157 DTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211
           D C ICR      C +C+        ++C + WG C+H FH HCI +WL ++QV   CP+
Sbjct: 32  DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPL 88
Query: 212 CRQEWKFKE 220
             +EW+F++
Sbjct: 89  DNREWEFQK 97

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 150 WRWVANDDTCGICRIAFEGCCSDCKLPG--DDCPLVWGQCSHCFHIHCIMKWLNSQQVHH 207
           W W    DTC ICR+     C  C+     +DC +VWG+C+H FH  C+  W+     ++
Sbjct: 9   WSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NN 65
Query: 208 QCPMCRQEW 216
           +CP+C+Q+W
Sbjct: 66  RCPLCQQDW 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-30
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	1e-24
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-24
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	5e-10
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	6e-10
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-09
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	7e-09
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-08
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-08
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	4e-08
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-08
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	8e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-07
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	1e-07
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	6e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	4e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	6e-04

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score =  106 bits (267), Expect = 1e-30
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPG--DDCPLVWGQCSHCFHIHCIMKWLN 201
                 W W    DTC ICR+     C  C+     +DC +VWG+C+H FH  C+  W+ 
Sbjct: 3   SGSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK 62

Query: 202 SQQVHHQCPMCRQEWKFKE 220
               +++CP+C+Q+W  + 
Sbjct: 63  Q---NNRCPLCQQDWVVQR 78

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 93.0 bits (230), Expect = 1e-24
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 36  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 95

Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++Q    CP+  +EW+F++
Sbjct: 96  WLKTRQ---VCPLDNREWEFQK 114

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 91.4 bits (226), Expect = 3e-24
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+        ++C + WG C+H FH HCI +
Sbjct: 25  WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 84

Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL ++Q    CP+  +EW+F++
Sbjct: 85  WLKTRQ---VCPLDNREWEFQK 103

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 53.5 bits (129), Expect = 5e-10
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 13/63 (20%)

Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
           V  +  C IC   +       +LP          C H FH  C+  WL        CP+C
Sbjct: 37  VGQEMCCPICCSEYVKGDVATELP----------CHHYFHKPCVSIWLQK---SGTCPVC 83

Query: 213 RQE 215
           R  
Sbjct: 84  RCM 86

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 54.1 bits (129), Expect = 6e-10
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 153 VANDDTCGICRIAFEGCCS-----DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ--V 205
           VA ++ C IC              D K  G        +CSH FH+ C++    +     
Sbjct: 22  VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG 81

Query: 206 HHQCPMCRQEWKFKE 220
             QCP C+  +  K 
Sbjct: 82  SLQCPSCKTIYGEKT 96

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 13/63 (20%)

Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
           V +   C +C+  +    S  +LP          C+H FH  CI+ WL     H  CP+C
Sbjct: 12  VGSGLECPVCKEDYALGESVRQLP----------CNHLFHDSCIVPWLEQ---HDSCPVC 58

Query: 213 RQE 215
           R+ 
Sbjct: 59  RKS 61

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 50.2 bits (120), Expect = 7e-09
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 13/60 (21%)

Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
            + C +C   F+        P          C H FH  C++KWL   +V   CP+C   
Sbjct: 15  HELCAVCLEDFKPRDELGICP----------CKHAFHRKCLIKWL---EVRKVCPLCNMP 61

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 17/63 (26%)

Query: 153 VANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC 212
           + +++ C IC    +G  +D  LP          C+H F   CI KW +    H  CP+C
Sbjct: 12  LTDEEECCIC---MDGR-ADLILP----------CAHSFCQKCIDKWSDR---HRNCPIC 54

Query: 213 RQE 215
           R +
Sbjct: 55  RLQ 57

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 19/65 (29%)

Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDC---PLVWGQCSHCFHIHCIMKWLNSQQVHHQCP 210
           +    C +C   FE                P     C+H FH  C+ KWL +   +  CP
Sbjct: 21  SEQTLCVVCMCDFE--------SRQLLRVLP-----CNHEFHAKCVDKWLKA---NRTCP 64

Query: 211 MCRQE 215
           +CR +
Sbjct: 65  ICRAD 69

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 12/60 (20%)

Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
           +    C IC            +           C H  H  C  + L      ++CP+C 
Sbjct: 3   SGSSGCPICLEDIHTSRVVAHVL---------PCGHLLHRTCYEEMLKE---GYRCPLCS 50

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 170 CSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
           C    + G  C      C    H+ C+ K+  S     +CP C   W
Sbjct: 21  CHSLLIQGQSCE----TCGIRMHLPCVAKYFQSNA-EPRCPHCNDYW 62

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 21/225 (9%)

Query: 1   MSRSVLTYCTEKLSLKQINTISNKQQTYPGQAETLAKIKENLQGEESNERKNLKHPPPPS 60
           M+  VL     K        + ++  T     + +  I   L+     E K         
Sbjct: 15  MTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLE-SLYIEIKRGVTEDDGR 73

Query: 61  PQAIRVWTLRSPFNKI--LDTALQRRAYGLENEEISSSDMTVGESRSPSETEPGWESNPR 118
           P    V    +  +K+       +   +    E I  S+     S +            +
Sbjct: 74  PIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGF-ASSTNILNLVDQLKGKK 132

Query: 119 PSAHKADQVTR-------LAKSKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCS 171
               +A+QV +       L + +            +  +      D   IC I     C 
Sbjct: 133 MRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNI-----CH 187

Query: 172 DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW 216
              + G  C      C    H+ C+ K+  S     +CP C   W
Sbjct: 188 SLLIQGQSCE----TCGIRMHLPCVAKYFQSNA-EPRCPHCNDYW 227

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 47.0 bits (112), Expect = 8e-08
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 15/62 (24%)

Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
              + C IC    E   +               C H F   CI +W+   + +  CP+C+
Sbjct: 3   TVAERCPIC---LEDPSNYSMAL---------PCLHAFCYVCITRWI---RQNPTCPLCK 47

Query: 214 QE 215
             
Sbjct: 48  VP 49

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQ--------VH 206
            +  C IC   F       ++P   C     +C    H  C+ +W  +            
Sbjct: 307 EELRCNIC---FAYRLDGGEVPLVSCDNA--KCVLKCHAVCLEEWFKTLMDGKTFLEVSF 361

Query: 207 HQCPMCRQEWKFK 219
            QCP C+ +    
Sbjct: 362 GQCPFCKAKLSTS 374

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 19/64 (29%)

Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDC---PLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM 211
            ++ C IC    E         G+D    P     C H FH  C+ +WL +   + +CP+
Sbjct: 13  TEEKCTICLSILE--------EGEDVRRLP-----CMHLFHQVCVDQWLIT---NKKCPI 56

Query: 212 CRQE 215
           CR +
Sbjct: 57  CRVD 60

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
           +C H FH  C+  WL S   H  CP+CR 
Sbjct: 26  RCGHGFHAECVDMWLGS---HSTCPLCRL 51

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCR 213
           +   +C IC   +       ++  +   +V  +C H F   C+   L +    + CP CR
Sbjct: 13  SGTVSCPICMDGYS------EIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCR 63

Query: 214 QE 215
           ++
Sbjct: 64  KK 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           +C IC   +     + +L       V  +C H F   C+   L +    + CP CR++
Sbjct: 5   SCPICMDGYSEIVQNGRLI------VSTECGHVFCSQCLRDSLKN---ANTCPTCRKK 53

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 9/58 (15%)

Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           +C IC    +G     +            C H F   C+   L +    + CP CR++
Sbjct: 12  SCPIC---MDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSLKN---ANTCPTCRKK 60

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
           C H     C+  W  S+     CP CR E K
Sbjct: 350 CGHLMCTSCLTSWQESE--GQGCPFCRCEIK 378

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
            CS      CI +WL  Q    QCP CR  
Sbjct: 40  HCSKLCCFSCIRRWLTEQ--RAQCPHCRAP 67

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 15/58 (25%)

Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
            C IC+       +  +            C H F   CI++         +CP C   
Sbjct: 17  LCSICKGYLIDATTITE------------CLHTFCKSCIVRHFYYSN---RCPKCNIV 59

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)

Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           C H F   C+           +C +CRQE
Sbjct: 33  CKHVFCYLCVKGASWLG---KRCALCRQE 58

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 15/58 (25%)

Query: 158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
            C +C   F    +  +            C H F   CI+++L   +    CP+C  +
Sbjct: 17  MCVLCGGYFIDATTIIE------------CLHSFCKTCIVRYL---ETSKYCPICDVQ 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.85
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.84
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.77
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.49
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.49
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.49
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.47
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.47
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.47
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.46
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.45
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.44
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.42
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.42
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.42
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.41
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.39
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.34
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.34
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.31
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.3
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.29
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.29
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.28
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.27
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.26
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.25
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.24
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.24
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.22
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.22
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.19
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.18
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.18
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.17
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.16
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.14
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.14
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.13
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.12
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.1
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.03
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.01
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.0
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.99
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.94
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.94
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.94
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.94
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.93
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.92
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.91
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.88
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.86
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.84
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.83
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.78
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.73
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.72
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.7
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.62
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.61
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.59
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.58
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.51
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.38
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.35
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.18
3nw0_A	238	Non-structural maintenance of chromosomes element	98.16
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.06
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.12
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	89.96
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	85.2
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	83.37

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.85  E-value=1.9e-22  Score=154.82  Aligned_cols=85  Identities=34%  Similarity=0.982  Sum_probs=73.3

Q ss_pred             ccCCCCCccccccccceecccCCCcccccccccccccCCCCC-----CCCCCCCceecCCCCcchHHHHHHHHHhCCCCC
Q psy14827        133 SKATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCK-----LPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHH  207 (220)
Q Consensus       133 s~~~~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~-----~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~  207 (220)
                      ....+++.+++|++++.|+|+..++.|+||++.|++.+..|+     .++++++++++.|||+||.+||..||..   +.
T Consensus        14 ~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~   90 (106)
T 3dpl_R           14 GAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQ   90 (106)
T ss_dssp             ---CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---CS
T ss_pred             ccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---CC
Confidence            345678999999999999999999999999999999887766     3667788999999999999999999999   99


Q ss_pred             CCCCcCccccccC
Q psy14827        208 QCPMCRQEWKFKE  220 (220)
Q Consensus       208 sCPvCR~e~~~~~  220 (220)
                      +||+||++|.|++
T Consensus        91 ~CP~Cr~~~~~~~  103 (106)
T 3dpl_R           91 VCPLDNREWEFQK  103 (106)
T ss_dssp             BCSSSCSBCCEEE
T ss_pred             cCcCCCCcceeec
Confidence            9999999999873

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.84  E-value=1.4e-22  Score=158.29  Aligned_cols=83  Identities=35%  Similarity=1.002  Sum_probs=19.8

Q ss_pred             CCCCCccccccccceecccCCCcccccccccccccCCCCCCC-----CCCCCceecCCCCcchHHHHHHHHHhCCCCCCC
Q psy14827        135 ATPFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQC  209 (220)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p-----~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sC  209 (220)
                      ..++|++++|.+++.|+|+..++.|+||++.|++.++.|+.+     +++++++++.|+|+||.+||..||..   +.+|
T Consensus        27 ~~~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---~~~C  103 (117)
T 4a0k_B           27 GKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVC  103 (117)
T ss_dssp             -CCSEEEEEEEEEEEEEECCCC----------------------------------------------------------
T ss_pred             cCCceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---CCcC
Confidence            457899999999999999999999999999999999888875     67788888899999999999999999   9999


Q ss_pred             CCcCccccccC
Q psy14827        210 PMCRQEWKFKE  220 (220)
Q Consensus       210 PvCR~e~~~~~  220 (220)
                      |+||++|.|+.
T Consensus       104 P~Cr~~~~~~k  114 (117)
T 4a0k_B          104 PLDNREWEFQK  114 (117)
T ss_dssp             -----------
T ss_pred             CCCCCeeeeec
Confidence            99999999973

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=8.9e-20  Score=132.64  Aligned_cols=74  Identities=35%  Similarity=1.066  Sum_probs=62.5

Q ss_pred             cccccceecccCCCcccccccccccccCCCCCCC--CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        143 GWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP--GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       143 ~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p--~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .+.+++.|+|+.+++.|+||++.|.+.+..+..+  +++.+++++.|||+||.+||..||..   +.+||+||++|.++
T Consensus         2 ~~~~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~~   77 (81)
T 2ecl_A            2 SSGSSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCCCCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCBCCEE
T ss_pred             CcceeEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCCcCCCcchh
Confidence            3567899999999999999999998865554433  34556777789999999999999999   88999999999876

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.49  E-value=2e-14  Score=109.40  Aligned_cols=65  Identities=23%  Similarity=0.486  Sum_probs=46.0

Q ss_pred             CCcccccccccccccCCCCCCC-----CCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p-----~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e~~~~  219 (220)
                      .+..|+|||+.|.+.......+     .....+.++.|||+||..||..||...  ..+.+||+||+.|..+
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            3468999999998754322211     111234467899999999999999531  1278999999988754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.49  E-value=2.1e-14  Score=100.05  Aligned_cols=51  Identities=29%  Similarity=0.738  Sum_probs=42.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .+..|+||++.|..+          ...+.+.|||+||..||..|+..   +.+||+||++|..
T Consensus        13 ~~~~C~IC~~~~~~~----------~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           13 TEEKCTICLSILEEG----------EDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIEA   63 (69)
T ss_dssp             CCCSBTTTTBCCCSS----------SCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSBSCS
T ss_pred             CCCCCeeCCccccCC----------CcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCccccC
Confidence            346899999999652          24555669999999999999999   8899999998864

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.49  E-value=9.8e-15  Score=97.29  Aligned_cols=51  Identities=31%  Similarity=0.791  Sum_probs=41.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++..|+||++.|..+         +.+..++.|||+||..||..|++.   +.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~---------~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDG---------EEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTT---------SCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCC---------CceEECCCCCCcccHHHHHHHHHc---CCcCcCCCCEeE
Confidence            346899999999763         223444459999999999999998   899999999874

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.47  E-value=2.5e-14  Score=95.16  Aligned_cols=50  Identities=22%  Similarity=0.470  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      .+..|+||++.|.+.         +...+.+.|||+||..||..|++.   +..||+||+++
T Consensus         4 ~~~~C~IC~~~~~~~---------~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~   53 (55)
T 2ecm_A            4 GSSGCPICLEDIHTS---------RVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPS   53 (55)
T ss_dssp             CCCSCTTTCCCCCTT---------TSCEEECTTSCEEETTHHHHHHHH---TCCCTTSCCSS
T ss_pred             CCCcCcccChhhcCC---------CcCeEecCCCCcccHHHHHHHHHc---CCcCCCCCCcC
Confidence            346899999999652         224666679999999999999999   89999999976

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-14  Score=102.99  Aligned_cols=50  Identities=34%  Similarity=0.799  Sum_probs=42.1

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+..|+||++.|..+          ..++.+.|||+||..||..|++.   +..||+||+++.
T Consensus        22 ~~~~C~IC~~~~~~~----------~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~   71 (75)
T 1x4j_A           22 EQTLCVVCMCDFESR----------QLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSG   71 (75)
T ss_dssp             SCCEETTTTEECCBT----------CEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCCC
T ss_pred             CCCCCeECCcccCCC----------CeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcCC
Confidence            457899999999762          13455569999999999999999   899999999875

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.3e-14  Score=100.36  Aligned_cols=50  Identities=30%  Similarity=0.748  Sum_probs=41.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+..|+||++.|...          ..++.+.|||+||..||..|++.   +..||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~----------~~~~~~~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~~~   63 (74)
T 2ep4_A           14 LHELCAVCLEDFKPR----------DELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPVL   63 (74)
T ss_dssp             CSCBCSSSCCBCCSS----------SCEEEETTTEEEEHHHHHHHHHH---CSBCTTTCCBCS
T ss_pred             CCCCCcCCCcccCCC----------CcEEEcCCCCEecHHHHHHHHHc---CCcCCCcCcccc
Confidence            346899999999762          23445569999999999999999   889999999864

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.46  E-value=3.1e-14  Score=105.14  Aligned_cols=50  Identities=28%  Similarity=0.646  Sum_probs=41.7

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+..|+||++.|..+          ...+.+.|||+||..||..|+..   +.+||+||++|.
T Consensus        39 ~~~~C~IC~~~~~~~----------~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSEYVKG----------DVATELPCHHYFHKPCVSIWLQK---SGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEECCTT----------CEEEEETTTEEEEHHHHHHHHTT---TCBCTTTCCBSS
T ss_pred             CCCCCcccChhhcCC----------CcEEecCCCChHHHHHHHHHHHc---CCcCcCcCccCC
Confidence            457899999999762          13444559999999999999998   889999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=3.1e-14  Score=101.42  Aligned_cols=52  Identities=29%  Similarity=0.720  Sum_probs=42.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .+..|+||++.|...          ..++.+.|||+||..||..|++.   +..||+||+++..+
T Consensus        14 ~~~~C~IC~~~~~~~----------~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           14 SGLECPVCKEDYALG----------ESVRQLPCNHLFHDSCIVPWLEQ---HDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSCCCTTTTSCCCTT----------SCEEECTTSCEEETTTTHHHHTT---TCSCTTTCCCCCCS
T ss_pred             CCCCCeeCCccccCC----------CCEEEeCCCCeecHHHHHHHHHc---CCcCcCcCCccCCc
Confidence            346899999999762          23455569999999999999998   89999999988654

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.44  E-value=3.9e-14  Score=98.80  Aligned_cols=56  Identities=25%  Similarity=0.605  Sum_probs=44.3

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ++..|+||++.|.+..      ..+...+.+.|||+||..||..|++.   +..||+||+++...
T Consensus         9 ~~~~C~IC~~~~~~~~------~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIV------QNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHK   64 (71)
T ss_dssp             TCCBCTTTCCBHHHHH------TTTCCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCCC
T ss_pred             CCCCCcccChhhhccc------cccCCeEeCCCCChHhHHHHHHHHHc---CCCCCCCCCccChh
Confidence            4468999999997720      01124466779999999999999999   89999999987643

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=6.6e-14  Score=96.77  Aligned_cols=55  Identities=24%  Similarity=0.603  Sum_probs=43.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ....|+||++.|.+...      .....+.+.|||+||..||..|+..   +..||+||+++.-
T Consensus        14 ~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQ------NGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCCTTTCCCHHHHTT------TTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred             CCCCCcccCcccccccc------ccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence            34689999999987311      0123466679999999999999999   8999999998753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.42  E-value=6.7e-14  Score=95.38  Aligned_cols=55  Identities=25%  Similarity=0.602  Sum_probs=43.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      +..|+||++.|.+...      .....+.+.|||+||..||..|+..   +..||+||+++...
T Consensus         3 ~~~C~IC~~~~~~~~~------~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQ------NGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHH------TTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccc------cCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCcc
Confidence            4679999999976210      0113456679999999999999999   89999999987643

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.42  E-value=8e-14  Score=96.65  Aligned_cols=48  Identities=25%  Similarity=0.639  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+..|+||++.+.+            +.+.+.|||.||..||..|+..   +..||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~------------~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSN------------YSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCS------------CEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccC------------CcEecCCCCeeHHHHHHHHHhC---cCcCcCCChhhH
Confidence            34689999999966            5566779999999999999999   899999999864

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.6e-13  Score=96.64  Aligned_cols=49  Identities=22%  Similarity=0.493  Sum_probs=42.8

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ...|+||++.|.+            +++++.|||.||..||..|+..   +..||+||+++...
T Consensus        15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           15 YILCSICKGYLID------------ATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQT   63 (72)
T ss_dssp             GGSCTTTSSCCSS------------CEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSS
T ss_pred             CCCCCCCChHHHC------------cCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcc
Confidence            3689999999976            6666579999999999999998   89999999987653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=1.6e-13  Score=98.86  Aligned_cols=53  Identities=26%  Similarity=0.775  Sum_probs=42.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE  220 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~  220 (220)
                      ....|+||++.|..        +..++    .|+|.||.+||.+||+. .++.+||+||++|.|+.
T Consensus        14 ~i~~C~IC~~~i~~--------g~~C~----~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~~   66 (74)
T 2ct0_A           14 AVKICNICHSLLIQ--------GQSCE----TCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHEI   66 (74)
T ss_dssp             SSCBCSSSCCBCSS--------SEECS----SSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSCC
T ss_pred             CCCcCcchhhHccc--------CCccC----CCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCCC
Confidence            44789999999964        33333    69999999999999998 12389999999999863

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=3.9e-13  Score=97.90  Aligned_cols=54  Identities=28%  Similarity=0.762  Sum_probs=42.3

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCC-----CcchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS-----HCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE  220 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-----HvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~  220 (220)
                      .+..|.||+++|+++          .+++ +.|+     |.||..||..||..+ +..+||+||++|.+++
T Consensus        14 ~~~~C~IC~~~~~~~----------~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~-~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           14 SQDICRICHCEGDDE----------SPLI-TPCHCTGSLHFVHQACLQQWIKSS-DTRCCELCKYEFIMET   72 (80)
T ss_dssp             TSCCCSSSCCCCCSS----------SCEE-CSSSCCSSSCCEETTHHHHHHHHH-CCSBCSSSCCBCCCCC
T ss_pred             CCCCCeEcCccccCC----------CeeE-eccccCCcCCeeCHHHHHHHHhhC-CCCCCCCCCCeeecCc
Confidence            457899999999652          2444 4586     999999999999881 2369999999998753

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.7e-13  Score=95.24  Aligned_cols=48  Identities=27%  Similarity=0.536  Sum_probs=40.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .+..|+||++.|.+            ++.+ .|||+||..||..|+..   +..||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~------------~~~~-~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCVH------------PVSL-PCKHVFCYLCVKGASWL---GKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCSS------------EEEE-TTTEEEEHHHHHHCTTC---SSBCSSSCCBCCH
T ss_pred             CCCCCccCCcccCC------------CEEc-cCCCHHHHHHHHHHHHC---CCcCcCcCchhCH
Confidence            34689999999976            4444 59999999999999998   8999999998753

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=9.8e-13  Score=92.19  Aligned_cols=52  Identities=23%  Similarity=0.624  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .+..|+||++.|.+            ++++ .|||.||..||..|+....+...||+||+++...
T Consensus        19 ~~~~C~IC~~~~~~------------~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           19 EEVICPICLDILQK------------PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCBCTTTCSBCSS------------EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             cCCEeccCCcccCC------------eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            34689999999976            4554 6999999999999997322377999999988754

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.30  E-value=9.7e-13  Score=98.64  Aligned_cols=48  Identities=29%  Similarity=0.670  Sum_probs=41.4

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCC-CCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVH-HQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~-~sCPvCR~e~~~  218 (220)
                      +..|+||++.|.+            |+..+.|||.||..||..|+..   . ..||+||.++..
T Consensus        22 ~~~C~IC~~~~~~------------p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEKLRD------------ARLCPHCSKLCCFSCIRRWLTE---QRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHHH---TCSBCTTTCCBCCG
T ss_pred             CCCCccCCccccC------------ccccCCCCChhhHHHHHHHHHH---CcCCCCCCCCcCCH
Confidence            3579999999976            5664679999999999999998   5 799999998754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=92.60  Aligned_cols=49  Identities=27%  Similarity=0.514  Sum_probs=40.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +..|+||++.|.+            |+++..|||.||..||..|+... +...||+||+++.
T Consensus        15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~   63 (74)
T 2yur_A           15 ELLCLICKDIMTD------------AVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDV   63 (74)
T ss_dssp             GGSCSSSCCCCTT------------CEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSC
T ss_pred             CCCCcCCChHHhC------------CeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCC
Confidence            3679999999977            56654499999999999999971 2379999999754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-12  Score=89.93  Aligned_cols=49  Identities=22%  Similarity=0.558  Sum_probs=40.4

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ...|+||++.+.+            |+. +.|||+||..||..|+..  ++..||+||+++...
T Consensus        15 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           15 KYKCEKCHLVLCS------------PKQ-TECGHRFCESCMAALLSS--SSPKCTACQESIVKD   63 (66)
T ss_dssp             CEECTTTCCEESS------------CCC-CSSSCCCCHHHHHHHHTT--SSCCCTTTCCCCCTT
T ss_pred             CCCCCCCChHhcC------------eeE-CCCCCHHHHHHHHHHHHh--CcCCCCCCCcCCChh
Confidence            4689999999976            444 459999999999999953  278999999987654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3e-12  Score=92.50  Aligned_cols=54  Identities=24%  Similarity=0.437  Sum_probs=42.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ...|+||++.|.+.         +...+.+.|||.||..||..|+....+...||+||+.+..
T Consensus        15 ~~~C~IC~~~~~~~---------~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           15 VLECPICMESFTEE---------QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCBCTTTCCBCCTT---------SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CCCCccCCcccccc---------CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            46899999999762         2224455699999999999999982224899999998764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=92.66  Aligned_cols=46  Identities=33%  Similarity=0.729  Sum_probs=39.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ...|+||++.|.+            |++ +.|||+||..||..|+..   ...||+||+.+.
T Consensus        15 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~   60 (81)
T 2csy_A           15 PFRCFICRQAFQN------------PVV-TKCRHYFCESCALEHFRA---TPRCYICDQPTG   60 (81)
T ss_dssp             CSBCSSSCSBCCS------------EEE-CTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred             CCCCcCCCchhcC------------eeE-ccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence            3579999999976            454 569999999999999998   899999999864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.26  E-value=1.4e-12  Score=103.02  Aligned_cols=45  Identities=33%  Similarity=0.851  Sum_probs=39.4

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.|.+            |+.+ .|||.||..||..|+..   +.+||+||+++.
T Consensus        54 ~~C~iC~~~~~~------------~~~~-~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~   98 (138)
T 4ayc_A           54 LQCIICSEYFIE------------AVTL-NCAHSFCSYCINEWMKR---KIECPICRKDIK   98 (138)
T ss_dssp             SBCTTTCSBCSS------------EEEE-TTSCEEEHHHHHHHTTT---CSBCTTTCCBCC
T ss_pred             CCCcccCcccCC------------ceEC-CCCCCccHHHHHHHHHc---CCcCCCCCCcCC
Confidence            469999999976            4544 59999999999999998   899999999874

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.25  E-value=2.3e-12  Score=95.90  Aligned_cols=46  Identities=37%  Similarity=0.714  Sum_probs=40.9

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.|.+            |++++.|||.||..||..|+..   +..||+||+.+.
T Consensus        23 ~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~   68 (99)
T 2y43_A           23 LRCGICFEYFNI------------AMIIPQCSHNYCSLCIRKFLSY---KTQCPTCCVTVT   68 (99)
T ss_dssp             TBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCC
T ss_pred             CCcccCChhhCC------------cCEECCCCCHhhHHHHHHHHHC---CCCCCCCCCcCC
Confidence            579999999976            5666579999999999999998   899999999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.24  E-value=2.5e-12  Score=98.94  Aligned_cols=55  Identities=24%  Similarity=0.603  Sum_probs=43.1

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ++..|+||++.|.+...      ++...+.+.|||+||..||..|++.   +.+||+||+.+..
T Consensus         6 ~~~~C~IC~~~~~~~~~------~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQ------NGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHHHHHH------TTCCEEEETTCCEEEHHHHHHHHTT---CSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhhCccc------cccCeEecCCCChhhHHHHHHHHHh---CCCCCCCCCcCcc
Confidence            44689999999977100      0113466679999999999999999   8899999998764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.24  E-value=5.5e-12  Score=86.86  Aligned_cols=53  Identities=19%  Similarity=0.460  Sum_probs=40.7

Q ss_pred             Ccccccccc-cccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        156 DDTCGICRI-AFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       156 ~~~CaICLe-~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      +..|+||++ .|.+.         ....+.+.|||+||..||..|+..  +...||+||+.+...
T Consensus         3 ~~~C~IC~~~~~~~~---------~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNP---------SLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCS---------SCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCC---------ccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccc
Confidence            357999999 77651         112355679999999999999876  267899999987643

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.22  E-value=4e-12  Score=96.07  Aligned_cols=47  Identities=26%  Similarity=0.626  Sum_probs=41.6

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +..|+||++.|.+            |+.++.|||.||..||..|+..   +..||+||..+.
T Consensus        15 ~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~   61 (108)
T 2ckl_A           15 HLMCVLCGGYFID------------ATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVH   61 (108)
T ss_dssp             GTBCTTTSSBCSS------------EEEETTTCCEEEHHHHHHHHTS---CSBCTTTCCBSC
T ss_pred             cCCCccCChHHhC------------cCEeCCCCChhhHHHHHHHHHh---CCcCcCCCcccc
Confidence            4689999999977            6666579999999999999998   899999999865

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.22  E-value=5.9e-12  Score=89.49  Aligned_cols=49  Identities=20%  Similarity=0.456  Sum_probs=41.2

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .+..|+||++.|.+            |+++ .|||.||..||..|+..  ++..||+||+++..
T Consensus         7 ~~~~C~IC~~~~~~------------Pv~~-~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            7 EYFRCPISLELMKD------------PVIV-STGQTYERSSIQKWLDA--GHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSS------------EEEE-TTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSS
T ss_pred             ccCCCCCccccccC------------CEEc-CCCCeecHHHHHHHHHH--CcCCCCCCcCCCCh
Confidence            34689999999977            5555 59999999999999976  37899999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=84.11  Aligned_cols=45  Identities=27%  Similarity=0.717  Sum_probs=37.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      ++..|+||++.|.+            |+++ .|||+||..||..|+.....+..||+|
T Consensus        19 ~~~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQK------------PVTI-DCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSS------------CEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCC------------eEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34689999999976            5555 599999999999999852237799998

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=90.34  Aligned_cols=49  Identities=27%  Similarity=0.541  Sum_probs=40.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEW  216 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~  216 (220)
                      .+..|+||++.|.+            |+.+..|||.||..||..|+.. .+...||+||+++
T Consensus        12 ~~~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           12 DELLCLICKDIMTD------------AVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQND   60 (92)
T ss_dssp             TTTEETTTTEECSS------------CEECTTTCCEECHHHHHHHHHH-CTTCCCTTTCCSS
T ss_pred             cCCCCCCCChhhcC------------ceECCCCCCHHHHHHHHHHHHh-cCCCcCcCCCCcC
Confidence            34689999999977            6655449999999999999986 2357999999986

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.6e-12  Score=90.59  Aligned_cols=47  Identities=32%  Similarity=0.793  Sum_probs=39.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .+..|+||++.+.+              +.+.|||.||..||..|+..   +..||+||+++.-
T Consensus        14 ~~~~C~IC~~~~~~--------------~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           14 DEEECCICMDGRAD--------------LILPCAHSFCQKCIDKWSDR---HRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCSSSCCSCCS--------------EEETTTEEECHHHHHHSSCC---CSSCHHHHHCTTC
T ss_pred             CCCCCeeCCcCccC--------------cccCCCCcccHHHHHHHHHC---cCcCCCcCCcccC
Confidence            34689999999843              44559999999999999998   9999999997753

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.18  E-value=2.2e-11  Score=86.96  Aligned_cols=50  Identities=32%  Similarity=0.738  Sum_probs=41.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPvCR~e~~~  218 (220)
                      +..|+||++.|.+            +++ +.|||.||..||..|+...   .+...||+||+.+..
T Consensus        19 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           19 EVTCPICLELLKE------------PVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTSCTTTCSCCSS------------CEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             CCCCcCCChhhCc------------cee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4689999999976            554 4599999999999999872   136799999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.17  E-value=9.2e-12  Score=95.71  Aligned_cols=56  Identities=23%  Similarity=0.599  Sum_probs=43.9

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      .....|+||++.|.+....      ....+.+.|||+||..||.+|+..   +.+||+||+.+.-
T Consensus        70 ~~~~~C~iC~~~~~~~~~~------~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQN------GRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHT------TCCEEEETTSBEEEHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCcccccccc------CcceEeCCCCChhhHHHHHHHHHc---CCCCCCCCCcCCh
Confidence            3457899999999762111      113466679999999999999999   8999999998764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.16  E-value=1.4e-11  Score=99.68  Aligned_cols=47  Identities=30%  Similarity=0.656  Sum_probs=40.8

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.|.+            |+.++.|||.||..||..|+..  ++..||+||..+.
T Consensus        55 ~~C~IC~~~~~~------------p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           55 LMCPICLDMLKN------------TMTTKECLHRFCADCIITALRS--GNKECPTCRKKLV  101 (165)
T ss_dssp             HBCTTTSSBCSS------------EEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCC
T ss_pred             CCCcccChHhhC------------cCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCC
Confidence            589999999976            6666679999999999999986  3788999999873

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.14  E-value=2.2e-11  Score=91.80  Aligned_cols=49  Identities=31%  Similarity=0.723  Sum_probs=39.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..|+||++.|.+            |+.+ .|||.||..||..|+....+...||+||..+..
T Consensus        22 ~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           22 LECPICLELIKE------------PVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             TSCSSSCCCCSS------------CCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCcccChhhcC------------eEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            579999999976            4554 599999999999999973234589999998753

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=86.41  Aligned_cols=50  Identities=28%  Similarity=0.664  Sum_probs=40.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh---CCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS---QQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~---~~~~~sCPvCR~e~~~  218 (220)
                      ...|+||++.|.+            ++.+ .|||.||..||..|+..   ..+...||+||..+..
T Consensus        19 ~~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           19 EVTCPICLELLTQ------------PLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCTTTCSCCSS------------CBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCcccCC------------ceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            4689999999976            4444 59999999999999976   2347899999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.13  E-value=1.9e-11  Score=94.42  Aligned_cols=46  Identities=22%  Similarity=0.498  Sum_probs=39.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.|.+            |+.+ .|||.||..||..|+..  +...||+||+.+.
T Consensus        53 ~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~   98 (124)
T 3fl2_A           53 FQCICCQELVFR------------PITT-VCQHNVCKDCLDRSFRA--QVFSCPACRYDLG   98 (124)
T ss_dssp             TBCTTTSSBCSS------------EEEC-TTSCEEEHHHHHHHHHT--TCCBCTTTCCBCC
T ss_pred             CCCCcCChHHcC------------cEEe-eCCCcccHHHHHHHHhH--CcCCCCCCCccCC
Confidence            579999999976            5554 59999999999999986  2559999999875

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.12  E-value=8.8e-12  Score=88.40  Aligned_cols=51  Identities=27%  Similarity=0.619  Sum_probs=40.8

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC----CCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ----QVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~----~~~~sCPvCR~e~~~  218 (220)
                      ++..|+||++.|.+            |+.+ .|||.||..||..|+...    .+...||+||.++..
T Consensus        11 ~~~~C~IC~~~~~~------------p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           11 EEVTCPICLELLTE------------PLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCEETTTTEECSS------------CCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cCCCCcCCCcccCC------------eeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34689999999976            4444 599999999999999762    236799999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=3.2e-11  Score=80.63  Aligned_cols=45  Identities=27%  Similarity=0.851  Sum_probs=35.7

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMC  212 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvC  212 (220)
                      +...|+||++.|.+            +++ +.|||+||..||..|+.....+..||+|
T Consensus        14 ~~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKE------------PVI-IECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSS------------CCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCc------------cEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34689999999976            444 4599999999999996532238899998

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.04  E-value=7.5e-11  Score=94.83  Aligned_cols=48  Identities=21%  Similarity=0.524  Sum_probs=39.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ...|+||++.|.+            |++ +.|||.||..||..|+..  +...||+||..+..
T Consensus        78 ~~~C~IC~~~~~~------------pv~-~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           78 SFMCVCCQELVYQ------------PVT-TECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQ  125 (150)
T ss_dssp             HTBCTTTSSBCSS------------EEE-CTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCT
T ss_pred             CCEeecCChhhcC------------CEE-cCCCCchhHHHHHHHHHh--CCCcCCCCCccCCC
Confidence            3579999999977            555 459999999999999987  24589999998753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.03  E-value=7.1e-11  Score=90.69  Aligned_cols=48  Identities=27%  Similarity=0.557  Sum_probs=39.7

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      +..|+||++.|.+            |+.+ .|||.||..||..|+...  ...||+||.++..
T Consensus        18 ~~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   65 (118)
T 3hct_A           18 KYECPICLMALRE------------AVQT-PCGHRFCKACIIKSIRDA--GHKCPVDNEILLE   65 (118)
T ss_dssp             GGBCTTTCSBCSS------------EEEC-TTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred             CCCCCcCChhhcC------------eEEC-CcCChhhHHHHHHHHhhC--CCCCCCCCCCcCH
Confidence            4589999999976            5444 599999999999999881  3499999998754

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.01  E-value=1.3e-10  Score=88.69  Aligned_cols=48  Identities=29%  Similarity=0.629  Sum_probs=40.2

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      +..|+||++.|.+            |+. +.|||.||..||..|+...  ...||+||.++..
T Consensus        23 ~~~C~IC~~~~~~------------p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILAD------------PVE-TSCKHLFCRICILRCLKVM--GSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSS------------EEE-CTTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcC------------cEE-cCCCCcccHHHHHHHHhHC--cCcCCCCCCCCCH
Confidence            3579999999976            555 4699999999999999872  6789999998753

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.00  E-value=2e-10  Score=83.89  Aligned_cols=48  Identities=13%  Similarity=0.105  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..-.|+||++.|++            |+++. |||.|+..||..|+..   +.+||+||+++..
T Consensus        13 ~~~~CpI~~~~m~d------------PV~~~-cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~   60 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD------------PVRLP-SGTVMDRSIILRHLLN---SPTDPFNRQMLTE   60 (85)
T ss_dssp             TTTBCTTTCSBCSS------------EEECT-TSCEEEHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred             hheECcccCchhcC------------CeECC-CCCEECHHHHHHHHhc---CCCCCCCcCCCCh
Confidence            34689999999988            66666 9999999999999998   8999999998753

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.99  E-value=5.3e-11  Score=90.71  Aligned_cols=46  Identities=26%  Similarity=0.661  Sum_probs=39.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.|.+            |+.+ .|||.||..||..|+..  +...||+||+.+.
T Consensus        16 ~~C~iC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~   61 (115)
T 3l11_A           16 CQCGICMEILVE------------PVTL-PCNHTLCKPCFQSTVEK--ASLCCPFCRRRVS   61 (115)
T ss_dssp             HBCTTTCSBCSS------------CEEC-TTSCEECHHHHCCCCCT--TTSBCTTTCCBCH
T ss_pred             CCCccCCcccCc------------eeEc-CCCCHHhHHHHHHHHhH--CcCCCCCCCcccC
Confidence            579999999976            5555 59999999999999976  3678999999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.94  E-value=3.4e-10  Score=85.33  Aligned_cols=48  Identities=13%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..-.|+||++.|.+            |+++. |||.|+..||..|+..   +.+||+||.++..
T Consensus        28 ~~~~CpI~~~~m~d------------PV~~~-cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTD------------PVRLP-SGTIMDRSIILRHLLN---SPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSS------------EEEET-TTEEEEHHHHHHHTTS---CSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccC------------CeECC-CCCEEchHHHHHHHHc---CCCCCCCCCCCCh
Confidence            44689999999988            67776 9999999999999997   8899999998753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.94  E-value=3.6e-10  Score=84.84  Aligned_cols=48  Identities=19%  Similarity=0.151  Sum_probs=41.6

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCC-CcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCS-HCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~Cg-HvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..-.|+||++.|++            |+++. || |.|+..||..|+..   +.+||+||+++..
T Consensus        21 ~~~~CpI~~~~m~d------------PV~~~-cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD------------PVVLP-SSRVTVDRSTIARHLLS---DQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSS------------EEECT-TTCCEEEHHHHHHHTTT---SCBCTTTCSBCCT
T ss_pred             HhcCCcCccccccC------------CeECC-CCCeEECHHHHHHHHHh---CCCCCCCCCCCCh
Confidence            34689999999988            66655 99 99999999999998   8899999998754

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.94  E-value=3e-10  Score=78.69  Aligned_cols=48  Identities=25%  Similarity=0.517  Sum_probs=39.7

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCcee-cCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++..|.||++.+.+            ++++ +.|||+ |+..|+..|...   +..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~------------~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKN------------GCIVHGKTGHLMACFTCAKKLKKR---NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSC------------EEEEETTEEEEEECHHHHHHHHHT---TCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCC------------EEEECCCCCChhhHHHHHHHHHHc---CCcCCCcCcchh
Confidence            34689999999866            3333 369999 899999999998   889999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.94  E-value=1.4e-10  Score=92.36  Aligned_cols=49  Identities=27%  Similarity=0.626  Sum_probs=40.1

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..-.|+||++.|.+            |+. +.|||.||..||..|+..  +...||+||.++.|
T Consensus        30 ~~~~C~IC~~~~~~------------pv~-~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           30 AKYLCSACRNVLRR------------PFQ-AQCGHRYCSFCLASILSS--GPQNCAACVHEGIY   78 (141)
T ss_dssp             GGGBCTTTCSBCSS------------EEE-CTTSCEEEHHHHHHHGGG--SCEECHHHHHTTCC
T ss_pred             cCcCCCCCChhhcC------------cEE-CCCCCccCHHHHHHHHhc--CCCCCCCCCCcccc
Confidence            34689999999977            544 469999999999999987  24599999997643

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.93  E-value=4.4e-10  Score=81.14  Aligned_cols=52  Identities=19%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++..|+||++.|...         +.....+.|||.||..||..|+..  +...||+||+.+.
T Consensus        10 ~~~~CpICle~~~~~---------d~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~   61 (78)
T 1e4u_A           10 DPVECPLCMEPLEID---------DINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYP   61 (78)
T ss_dssp             CCCBCTTTCCBCCTT---------TTTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCS
T ss_pred             cCCcCCccCccCccc---------cccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccC
Confidence            446899999988541         111222359999999999999854  3789999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.92  E-value=5.1e-10  Score=102.82  Aligned_cols=46  Identities=30%  Similarity=0.715  Sum_probs=38.7

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.+.+            ++. +.|||+||..||..|+..  .+..||+||+++.
T Consensus       333 ~~C~ICle~~~~------------pv~-lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~  378 (389)
T 2y1n_A          333 QLCKICAENDKD------------VKI-EPCGHLMCTSCLTSWQES--EGQGCPFCRCEIK  378 (389)
T ss_dssp             SBCTTTSSSBCC------------EEE-ETTCCEECHHHHHHHHHH--TCSBCTTTCCBCC
T ss_pred             CCCCccCcCCCC------------eEE-eCCCChhhHHHHHHHHhc--CCCCCCCCCCccC
Confidence            589999999966            444 459999999999999993  1889999999865

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.91  E-value=1.7e-10  Score=88.39  Aligned_cols=46  Identities=24%  Similarity=0.616  Sum_probs=38.8

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ...|+||++.|.+            |+++..|||.||..||..|+.     ..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~------------pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~   67 (117)
T 1jm7_B           22 LLRCSRCTNILRE------------PVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWI   67 (117)
T ss_dssp             TTSCSSSCSCCSS------------CBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSC
T ss_pred             CCCCCCCChHhhC------------ccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCcc
Confidence            3579999999977            666646999999999999987     379999998754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.88  E-value=1e-09  Score=75.49  Aligned_cols=52  Identities=19%  Similarity=0.542  Sum_probs=38.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceec-CCCC---cchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWG-QCSH---CFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~-~CgH---vFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      +...|.||+++..+            +++.+ .|.|   .||..||.+|+.. .++.+||+||++|.++
T Consensus         5 ~~~~CrIC~~~~~~------------~l~~PC~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~~~~r   60 (60)
T 1vyx_A            5 DVPVCWICNEELGN------------ERFRACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNTR   60 (60)
T ss_dssp             SCCEETTTTEECSC------------CCCCSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCCC
T ss_pred             CCCEeEEeecCCCC------------ceecCcCCCCchhhhHHHHHHHHHHh-CCCCccCCCCCeeecC
Confidence            44689999987422            23322 3555   9999999999986 2478999999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.2e-09  Score=80.97  Aligned_cols=48  Identities=23%  Similarity=0.549  Sum_probs=39.7

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC---CCCCCCCC--cCcc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ---QVHHQCPM--CRQE  215 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~---~~~~sCPv--CR~e  215 (220)
                      .-.|+||++.|.+            |+++..|||+|+..||..|+..+   .+...||+  |++.
T Consensus         7 ~~~CPI~~~~~~d------------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            7 GFTCPITKEEMKK------------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CCBCTTTCSBCSS------------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             EeECcCcCchhcC------------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4579999999988            67775699999999999999872   12469999  9865

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.84  E-value=9.9e-10  Score=75.82  Aligned_cols=47  Identities=21%  Similarity=0.570  Sum_probs=38.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCce-ecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLV-WGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~-~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      +..|.||++...+            +.+ .+.|||+ |+..|+..|.+.   ...||+||+++.
T Consensus         7 ~~~C~IC~~~~~~------------~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRD------------GNIIHGRTGHLVTCFHCARRLKKA---GASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSC------------EEEEETTEEEEEECHHHHHHHHHT---TCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCC------------eEEEecCCCCHhHHHHHHHHHHHh---CCcCCCcCchhh
Confidence            4689999998866            232 2369998 999999999988   789999999875

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=5.2e-10  Score=75.28  Aligned_cols=44  Identities=25%  Similarity=0.651  Sum_probs=36.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ...|+||++.|.+            |+++ .|||.||..||..|      ...||+||+++..
T Consensus         6 ~~~C~IC~~~~~~------------p~~l-~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~   49 (56)
T 1bor_A            6 FLRCQQCQAEAKC------------PKLL-PCLHTLCSGCLEAS------GMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBC------------CSCS-TTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred             CCCceEeCCccCC------------eEEc-CCCCcccHHHHccC------CCCCCcCCcEeec
Confidence            4579999999976            5444 49999999999873      6689999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.78  E-value=2.1e-09  Score=91.96  Aligned_cols=48  Identities=15%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..-.|+||++.|.+            |+++. |||.||..||..|+...  ..+||+||.++.
T Consensus       207 ~~~~c~i~~~~~~d------------Pv~~~-~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~  254 (281)
T 2c2l_A          207 DYLCGKISFELMRE------------PCITP-SGITYDRKDIEEHLQRV--GHFNPVTRSPLT  254 (281)
T ss_dssp             STTBCTTTCSBCSS------------EEECS-SCCEEETTHHHHHHHHT--CSSCTTTCCCCC
T ss_pred             cccCCcCcCCHhcC------------CeECC-CCCEECHHHHHHHHHHC--CCCCcCCCCCCc
Confidence            44689999999988            66666 99999999999999872  445999999875

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.73  E-value=3.3e-09  Score=85.86  Aligned_cols=49  Identities=27%  Similarity=0.569  Sum_probs=40.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      +.-.|+||++.|.+            |+. +.|||+||..||..|+...  ...||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~------------pv~-~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALRE------------AVQ-TPCGHRFCKACIIKSIRDA--GHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSS------------EEE-CTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcC------------cEE-CCCCCHHHHHHHHHHHHhC--CCCCCCCccCcch
Confidence            34689999999977            555 4699999999999999872  4599999998754

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.72  E-value=2.5e-09  Score=96.93  Aligned_cols=58  Identities=22%  Similarity=0.555  Sum_probs=40.1

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC-C-------CCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ-Q-------VHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~-~-------~~~sCPvCR~e~~  217 (220)
                      ....|+||++.+.+.   ..+|...|  ..++|||.||..||.+||+.. .       -..+||+||+++.
T Consensus       307 ~~~ECaICys~~l~~---g~lPdk~C--~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDG---GEVPLVSC--DNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTT---CCCCCBCC--SCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCC---CCCccccc--cCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            346899999999761   22332111  123699999999999999861 0       0257999999764

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.70  E-value=2.5e-09  Score=75.84  Aligned_cols=41  Identities=24%  Similarity=0.477  Sum_probs=34.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.+.+            ++. +.|||. ||..|+..|       ..||+||+.+.
T Consensus        25 ~~C~iC~~~~~~------------~~~-~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~   66 (74)
T 4ic3_A           25 KLCKICMDRNIA------------IVF-VPCGHLVTCKQCAEAV-------DKCPMCYTVIT   66 (74)
T ss_dssp             TBCTTTSSSBCC------------EEE-ETTCCBCCCHHHHTTC-------SBCTTTCCBCS
T ss_pred             CCCCCCCCCCCC------------EEE-cCCCChhHHHHhhhcC-------ccCCCcCcCcc
Confidence            579999999866            444 459999 999999988       36999999875

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.62  E-value=9.6e-09  Score=89.89  Aligned_cols=51  Identities=29%  Similarity=0.605  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC--cCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM--CRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv--CR~e~~~  218 (220)
                      .+-.|+||++.|.+            |+....|||+|+..||..|+.. .+...||+  ||+.+..
T Consensus       180 ~el~CPIcl~~f~D------------PVts~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          180 IELTCPITCKPYEA------------PLISRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CCSBCTTTSSBCSS------------EEEESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSCEECG
T ss_pred             eeeECcCccCcccC------------CeeeCCCCCcccHHHHHHHHHh-CCCCCCCcccccCcCch
Confidence            34689999999988            7776679999999999999986 23568999  9997654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.61  E-value=1.8e-08  Score=83.54  Aligned_cols=49  Identities=14%  Similarity=0.056  Sum_probs=40.7

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..-.|+||++.|.+            |+++ .|||.|+..||..|+..+  ..+||+||.++..
T Consensus       105 ~~f~CPI~~elm~D------------PV~~-~~Ghtfer~~I~~~l~~~--~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMRE------------PCIT-PSGITYDRKDIEEHLQRV--GHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSS------------EEEC-TTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCC------------CeEC-CCCCEECHHHHHHHHHhC--CCCCCCCcCCCCh
Confidence            34689999999988            6666 499999999999999872  3479999998754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.59  E-value=1.8e-08  Score=69.42  Aligned_cols=47  Identities=11%  Similarity=0.222  Sum_probs=41.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      -.|+||++.|++            |++...|||+|...||.+||+.   +.+||++++++..
T Consensus         4 ~~CpIs~~~m~d------------PV~~~~sG~~yer~~I~~~l~~---~~~cP~t~~~L~~   50 (61)
T 2bay_A            4 MLCAISGKVPRR------------PVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSI   50 (61)
T ss_dssp             CCCTTTCSCCSS------------EEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCG
T ss_pred             EEecCCCCCCCC------------CEEeCCCCcEEcHHHHHHHHHh---CCCCcCCcCCCCh
Confidence            469999999987            6666469999999999999998   6789999998754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2.2e-08  Score=70.91  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|+||++.+.+            ++. +.|||. ||..|+.    .   ...||+||+++.
T Consensus        26 ~~C~IC~~~~~~------------~~~-~pCgH~~~C~~C~~----~---~~~CP~Cr~~i~   67 (75)
T 2ecg_A           26 KLCKICMDRNIA------------IVF-VPCGHLVTCKQCAE----A---VDKCPMCYTVIT   67 (75)
T ss_dssp             HSCSSSCSSCCC------------BCC-SSSCCCCBCHHHHH----H---CSBCTTTCCBCC
T ss_pred             CCCCcCCCCCCC------------EEE-ecCCCHHHHHHHhh----C---CCCCccCCceec
Confidence            579999999866            333 459999 9999995    3   568999999765

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=5e-08  Score=68.32  Aligned_cols=43  Identities=33%  Similarity=0.661  Sum_probs=34.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++..|.||++.+.+             .+.+.|||+ ||..|+.    .   ...||+||+.+.
T Consensus        14 ~~~~C~IC~~~~~~-------------~v~~pCgH~~~C~~C~~----~---~~~CP~CR~~i~   57 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN-------------WVLLPCRHTCLCDGCVK----Y---FQQCPMCRQFVQ   57 (68)
T ss_dssp             CSSCCSSSSSSCCC-------------CEETTTTBCCSCTTHHH----H---CSSCTTTCCCCC
T ss_pred             CCCCCCCcCcCCCC-------------EEEECCCChhhhHHHHh----c---CCCCCCCCcchh
Confidence            34689999998765             444559999 9999998    3   568999999875

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.38  E-value=9.6e-08  Score=70.20  Aligned_cols=50  Identities=18%  Similarity=0.470  Sum_probs=37.1

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--C---CCCCCCC--cCcc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--Q---VHHQCPM--CRQE  215 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~---~~~sCPv--CR~e  215 (220)
                      ...|+||++.+...          ..+.+..|||.||..||..++...  +   ....||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~----------~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVE----------QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGG----------GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccc----------cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35799999999762          112223599999999999999752  1   1358999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.35  E-value=8.2e-08  Score=69.06  Aligned_cols=41  Identities=22%  Similarity=0.567  Sum_probs=33.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ..|.||++.+.+            + +.+.|||+ ||..|+..|       ..||+||+.+.
T Consensus        19 ~~C~IC~~~~~~------------~-v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~   60 (79)
T 2yho_A           19 MLCMVCCEEEIN------------S-TFCPCGHTVCCESCAAQL-------QSCPVCRSRVE   60 (79)
T ss_dssp             TBCTTTSSSBCC------------E-EEETTCBCCBCHHHHTTC-------SBCTTTCCBCC
T ss_pred             CEeEEeCcccCc------------E-EEECCCCHHHHHHHHHhc-------CcCCCCCchhh
Confidence            579999998866            3 44459999 999999865       37999999764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.18  E-value=2.2e-07  Score=84.02  Aligned_cols=43  Identities=26%  Similarity=0.594  Sum_probs=35.4

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCc-chHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHC-FHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHv-FH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++..|+||++.+.+            ++.+ .|||. ||..|+..|       ..||+||..+.
T Consensus       294 ~~~~C~IC~~~~~~------------~v~l-pCgH~~fC~~C~~~~-------~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVS------------VVFI-PCGHLVVCQECAPSL-------RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCC------------EEEE-TTCCEEECTTTGGGC-------SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCc------------eEEc-CCCChhHhHHHHhcC-------CcCCCCCCCcc
Confidence            34689999999976            4444 59999 999999987       36999999875

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.16  E-value=9.1e-07  Score=76.19  Aligned_cols=52  Identities=27%  Similarity=0.807  Sum_probs=41.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ....|+||.+-+..        |..|+    .|+|.||.+|+..|++. .++..||.|+.+|.++
T Consensus       179 ~i~~C~iC~~iv~~--------g~~C~----~C~~~~H~~C~~~~~~~-~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQ--------GQSCE----TCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSS--------CEECS----SSCCEECHHHHHHHTTT-CSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhC--------CcccC----ccChHHHHHHHHHHHHh-CCCCCCCCCCCCCCCC
Confidence            35789999999864        32232    39999999999999987 2356999999999875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.06  E-value=2e-06  Score=64.91  Aligned_cols=49  Identities=20%  Similarity=0.390  Sum_probs=39.1

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccccC
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE  220 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~~  220 (220)
                      -|.+|--+|..            -..+..|+|+||.+|+..|...  +..+||.|+.++...|
T Consensus         3 fC~~C~~Pi~i------------ygRmIPCkHvFCydCa~~~~~~--~~k~Cp~C~~~V~rVe   51 (101)
T 3vk6_A            3 FCDKCGLPIKV------------YGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQRIE   51 (101)
T ss_dssp             BCTTTCSBCSE------------EEEEETTCCEEEHHHHHHHHHT--TCCBCTTTCCBCSEEE
T ss_pred             ecCccCCCeEE------------EeeeccccccHHHHHHHHHHhc--cCCCCcCcCCeeeeeE
Confidence            48888877765            3445569999999999999866  2789999999987654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.12  E-value=0.019  Score=41.79  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCcee-cCCCCcchHHHHHH-HH
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVW-GQCSHCFHIHCIMK-WL  200 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~-~~CgHvFH~~CI~~-WL  200 (220)
                      ..|.||++.+...           ++.. +.|+|.|+..|+.. |.
T Consensus         4 ~~C~~C~~~~~~~-----------av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            4 VLCQFCDQDPAQD-----------AVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CBCTTCCSSSCCB-----------CCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCcCCCCCCCCC-----------ceEECCcCChHHhHHHCHHHhc
Confidence            5799999875331           3332 67999999999998 54

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=89.96  E-value=0.12  Score=35.49  Aligned_cols=47  Identities=26%  Similarity=0.555  Sum_probs=32.9

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCcc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQE  215 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e  215 (220)
                      +..|.||.+.=            + .+.--.|...||..|+.+.|.. ..+.=.||.|...
T Consensus        12 ~~~C~vC~~~~------------~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           12 GARCGVCGDGT------------D-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             TCCCTTTSCCT------------T-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCcCCCCCCC------------e-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            36799996421            1 2333459999999999988865 1335589999764

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=85.20  E-value=0.51  Score=33.60  Aligned_cols=43  Identities=14%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             cceecccCCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHH
Q psy14827        147 VATWRWVANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMK  198 (220)
Q Consensus       147 ~~~~~~~~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~  198 (220)
                      ...|..+.+...|.+|...|..-..         .-.--.||++||..|...
T Consensus        12 ~~~W~pd~~~~~C~~C~~~Fs~~~R---------rHHCR~CG~v~C~~Cs~~   54 (84)
T 1z2q_A           12 KGYWQEDEDAPACNGCGCVFTTTVR---------RHHCRNCGYVLCGDCSRH   54 (84)
T ss_dssp             CSCCCCTTTCCBCTTTCCBCCTTSC---------CEECTTTCCEECTGGGCC
T ss_pred             CCccccCCCCCCCcCcCCccccchh---------cccccCCCcEEChHHhCC
Confidence            4567777888899999999965100         111124999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-22
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	6e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-07
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-06
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	4e-06
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	5e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	0.001
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.002
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	0.002

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 1e-22
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 144 WTGVATWRWVANDDTCGICRIAFEGCCSDCKLPGDD-----CPLVWGQCSHCFHIHCIMK 198
           W  VA W W    D C ICR      C +C+          C + WG C+H FH HCI +
Sbjct: 9   WNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 68

Query: 199 WLNSQQVHHQCPMCRQEWKFKE 220
           WL   +    CP+  +EW+F++
Sbjct: 69  WL---KTRQVCPLDNREWEFQK 87

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 48.7 bits (116), Expect = 6e-09
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 12/61 (19%)

Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
           +   C +C    E       LP         +C H FH  C+  WL S   H  CP+CR 
Sbjct: 4   DGVECAVCLAELEDGEEARFLP---------RCGHGFHAECVDMWLGS---HSTCPLCRL 51

Query: 215 E 215
            
Sbjct: 52  T 52

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 46.4 bits (109), Expect = 5e-08
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
            D+   +C I  E   ++                   H  C+  WL   + +  C +C  
Sbjct: 2   EDEDVPVCWICNEELGNERFRACGCTG-----ELENVHRSCLSTWLTISR-NTACQICGV 55

Query: 215 EWKFK 219
            +  +
Sbjct: 56  VYNTR 60

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 154 ANDDTCGICRIAFEGCCS-----DCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQV--H 206
           A ++ C IC              D K  G        +CSH FH+ C++    +      
Sbjct: 23  APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82

Query: 207 HQCPMCRQEWKFK 219
            QCP C+  +  K
Sbjct: 83  LQCPSCKTIYGEK 95

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 12/65 (18%)

Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
             T  +C+I  E        P          C H     C+  W  S+     CP CR E
Sbjct: 20  GSTFQLCKICAENDKDVKIEP----------CGHLMCTSCLTSWQESE--GQGCPFCRCE 67

Query: 216 WKFKE 220
            K  E
Sbjct: 68  IKGTE 72

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 10/65 (15%), Positives = 14/65 (21%), Gaps = 10/65 (15%)

Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           D  C  C+                  L+   C H     C+            CP C   
Sbjct: 3   DQGCPRCKTTKY--------RNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPECGTP 52

Query: 216 WKFKE 220
            +   
Sbjct: 53  LRKSN 57

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 40.7 bits (95), Expect = 5e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 15/62 (24%)

Query: 156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
            + C IC                    +   C H F   CI +W+     +  CP+C+  
Sbjct: 5   AERCPICLEDPS------------NYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVP 49

Query: 216 WK 217
            +
Sbjct: 50  VE 51

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFKE 220
           C H F   C++K LN ++   QCP+C+ +   + 
Sbjct: 39  CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 6/29 (20%)

Query: 187 CSHCFHIHCIMKWLNSQQVHHQCPMCRQE 215
           C H     C+           QCP+C+  
Sbjct: 24  CLHTLCSGCLEAS------GMQCPICQAP 46

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)

Query: 186 QCSHCFHIHCIMKWLNSQQVHHQCPMCRQ 214
            C H F   CI++ L        CP CR 
Sbjct: 40  SCKHLFCRICILRCLKVMG--SYCPSCRY 66

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 11/59 (18%)

Query: 159 CGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK 217
           C +C    E          DD       C +     C  +    +  +  CP CR+ + 
Sbjct: 3   CPLCMEPLEI---------DDINFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.83
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.59
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.55
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.48
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.48
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.47
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.4
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.4
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.23
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.23
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.08
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.05
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.98
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.94
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.79
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.38
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	91.23
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	87.16
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	80.76

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.3e-22  Score=145.83  Aligned_cols=81  Identities=36%  Similarity=1.024  Sum_probs=68.9

Q ss_pred             CCCccccccccceecccCCCcccccccccccccCCCCCCC-----CCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCC
Q psy14827        137 PFNPMVGWTGVATWRWVANDDTCGICRIAFEGCCSDCKLP-----GDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPM  211 (220)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~CaICLe~f~~~~~~~~~p-----~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPv  211 (220)
                      +++.+++|.+++.|+|+..++.|+||++.+.+.+..+..+     ....+++.+.|||+||.+||.+||+.   +.+||+
T Consensus         2 ~~~~ik~~~av~~w~~d~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~   78 (88)
T d3dplr1           2 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPL   78 (88)
T ss_dssp             CSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---CSBCSS
T ss_pred             CceEEeeEEEEEEEeecCCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH---CCcCCC
Confidence            4678899999999999999999999999998876654332     23346677789999999999999999   899999


Q ss_pred             cCccccccC
Q psy14827        212 CRQEWKFKE  220 (220)
Q Consensus       212 CR~e~~~~~  220 (220)
                      ||++|.||+
T Consensus        79 CR~~~~~~~   87 (88)
T d3dplr1          79 DNREWEFQK   87 (88)
T ss_dssp             SCSBCCEEE
T ss_pred             CCCcccccc
Confidence            999999974

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.59  E-value=1.7e-16  Score=106.42  Aligned_cols=51  Identities=31%  Similarity=0.791  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++..|+|||++|..+         +...+.+.|||.||..||..|++.   +.+||+||+++-
T Consensus         4 d~~~C~ICl~~~~~~---------~~~~~l~~C~H~Fh~~Ci~~Wl~~---~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDG---------EEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTT---------SCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCC---------CEEEEeCCCCCcccHHHHHHHHHh---CCcCCCCCCEeE
Confidence            346799999999873         223445569999999999999999   899999999763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.55  E-value=8.8e-16  Score=106.64  Aligned_cols=47  Identities=26%  Similarity=0.668  Sum_probs=41.7

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .+.|+||++.|.+            +.+.+.|||+||..||..|++.   +.+||+||+++.
T Consensus         5 ~d~C~IC~~~~~~------------~~~~~~C~H~Fc~~Ci~~w~~~---~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPSN------------YSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCS------------CEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred             CCCCccCCcCccC------------CcEEeCCCCcCcHHHHHHHHHh---CCcCCCCCcchH
Confidence            4679999999966            5666779999999999999999   899999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.7e-14  Score=108.77  Aligned_cols=65  Identities=23%  Similarity=0.474  Sum_probs=46.6

Q ss_pred             CCcccccccccccccCCCCCC-----CCCCCCceecCCCCcchHHHHHHHHHhC--CCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKL-----PGDDCPLVWGQCSHCFHIHCIMKWLNSQ--QVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~-----p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~~~~sCPvCR~e~~~~  219 (220)
                      .++.|+||+++|.........     ..+...+.++.|||+||..||..||...  .++.+||+||+.|..+
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            357899999999764322111     1233456777899999999999999862  1355899999988654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=100.08  Aligned_cols=55  Identities=18%  Similarity=0.402  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      ++..|+||++.+..        +.+...+.+.|||+||..||..|+..  ++..||+||+.+...
T Consensus         2 dd~~CpIC~~~~~~--------~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYR--------NPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHH--------CSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeec--------CCceEEEeCccChHhhHHHHHHHhCc--CcCCCCCCCcCcccc
Confidence            35789999998765        22334566679999999999999976  256799999987543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6e-15  Score=97.48  Aligned_cols=49  Identities=18%  Similarity=0.405  Sum_probs=38.9

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      .|+||+++|....         ..+..+.|||+||..||..|++..  +..||+||++|+
T Consensus         2 eCpICl~~~~~~~---------~~~~~~~CgH~~c~~C~~~w~~~~--~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDD---------INFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGG---------TTCCSSSSSCCCCHHHHHHHTTTS--CCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCC---------ceEEecCCCCccchHHHHHHHhhc--CCCCCccCCcCC
Confidence            5999999997631         123344699999999999999862  667999999875

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=3.3e-14  Score=95.14  Aligned_cols=47  Identities=11%  Similarity=0.252  Sum_probs=42.5

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .|+||++.|++            |++...|||+||..||.+||..   +..||+||+++..+
T Consensus         2 ~C~Ic~~~~~~------------Pv~~~~cGh~fc~~cI~~~l~~---~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRR------------PVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSS------------EEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCGG
T ss_pred             CCccCCchHHh------------cCccCCCCCcccHHHHHHHHhh---ccCCCccCCcCCHH
Confidence            49999999987            7888889999999999999999   88999999987643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.40  E-value=6.3e-14  Score=94.70  Aligned_cols=57  Identities=16%  Similarity=0.324  Sum_probs=42.0

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccccc
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKFK  219 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~~  219 (220)
                      .+...|.||++++.+..+        .+-.-..|+|+||..||..|+.. +++.+||+||++|++|
T Consensus         4 ed~~~C~IC~~~~~~~~~--------~~c~c~~c~h~~H~~Cl~~W~~~-~~~~~CP~Cr~~~~~k   60 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERF--------RACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNTR   60 (60)
T ss_dssp             CSCCEETTTTEECSCCCC--------CSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCCC
T ss_pred             CCCCCCccCCccCCCcee--------EecccCCCCCEEcHHHHHHHHhh-CCCCCCcccCCeeecC
Confidence            345789999998865211        11122236799999999999976 2377999999999986

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.5e-13  Score=97.92  Aligned_cols=47  Identities=30%  Similarity=0.654  Sum_probs=39.0

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ..|+||++.+.+            ++ ++.|||+||..||..||..+  +..||+||.++.-
T Consensus        24 ~~C~IC~~~~~~------------~~-~~~CgH~fC~~Ci~~wl~~~--~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDKD------------VK-IEPCGHLMCTSCLTSWQESE--GQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBCC------------EE-CSSSCCEECHHHHHHHHHTT--CCSCTTTCCCCCC
T ss_pred             CCCccCCCcCCC------------eE-EeCCCCeeeHHHHHHHHHHC--cCcCCCCCcCccC
Confidence            469999999876            44 45599999999999999861  6789999998753

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.9e-12  Score=95.96  Aligned_cols=49  Identities=31%  Similarity=0.723  Sum_probs=40.2

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      -.|+||++.|.+            |+.+ .|||.||..||..|+....+...||+||.++..
T Consensus        22 l~CpIC~~~~~~------------pv~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          22 LECPICLELIKE------------PVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             TSCSSSCCCCSS------------CCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             cCCCccCchhCC------------eEEc-CCCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            469999999977            5554 599999999999999873334689999998754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.8e-12  Score=93.95  Aligned_cols=47  Identities=30%  Similarity=0.622  Sum_probs=39.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      -.|+||++.|.+            |+++ .|||.||+.||..|++..  ...||+||.++..
T Consensus        24 l~C~IC~~~~~~------------pv~~-~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~p~~~   70 (86)
T d1rmda2          24 ISCQICEHILAD------------PVET-SCKHLFCRICILRCLKVM--GSYCPSCRYPCFP   70 (86)
T ss_dssp             TBCTTTCSBCSS------------EEEC-TTSCEEEHHHHHHHHHHT--CSBCTTTCCBCCG
T ss_pred             cCCccCCcchhc------------ceec-CCCChhhHHHHHHHHhhC--CCcCcccCCCCCh
Confidence            479999999977            5555 599999999999999862  5689999998754

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.1e-12  Score=92.21  Aligned_cols=45  Identities=24%  Similarity=0.673  Sum_probs=38.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      -.|+||++.|.+            |+....|||.||..||..|+..     .||+||.++..
T Consensus        23 l~C~IC~~~~~~------------pv~~~~CgH~fC~~Ci~~~~~~-----~CP~Cr~~~~~   67 (97)
T d1jm7b_          23 LRCSRCTNILRE------------PVCLGGCEHIFCSNCVSDCIGT-----GCPVCYTPAWI   67 (97)
T ss_dssp             TSCSSSCSCCSS------------CBCCCSSSCCBCTTTGGGGTTT-----BCSSSCCBCSC
T ss_pred             CCCccCCchhhc------------CceeCCCCCchhHHHHHHHHhc-----cccccCCcCch
Confidence            479999999977            6766679999999999999865     49999987653

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=6.7e-12  Score=83.92  Aligned_cols=43  Identities=26%  Similarity=0.701  Sum_probs=35.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        157 DTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       157 ~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      -.|+||++.|.+            ++++ .|||+||..||..|      +..||+||+++.-
T Consensus         7 l~C~IC~~~~~~------------p~~l-pCgH~fC~~Ci~~~------~~~CP~Cr~~~~~   49 (56)
T d1bora_           7 LRCQQCQAEAKC------------PKLL-PCLHTLCSGCLEAS------GMQCPICQAPWPL   49 (56)
T ss_dssp             SSCSSSCSSCBC------------CSCS-TTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred             CCCcccCcccCC------------CEEe-cCCCHHhHHHHHcC------CCcCcCCCCcccC
Confidence            479999999977            4544 49999999999754      6679999998754

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=9.2e-11  Score=82.94  Aligned_cols=49  Identities=14%  Similarity=0.082  Sum_probs=40.9

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ++-.|+||++.|.+            |++ +.|||.|+..||..|+...  +..||+||.++..
T Consensus         6 ~~l~CpIc~~l~~d------------Pv~-~~cGhtfc~~ci~~~l~~~--~~~cP~c~~~l~~   54 (80)
T d2c2la2           6 DYLCGKISFELMRE------------PCI-TPSGITYDRKDIEEHLQRV--GHFNPVTRSPLTQ   54 (80)
T ss_dssp             STTBCTTTCSBCSS------------EEE-CSSCCEEETTHHHHHHHHT--CSSCTTTCCCCCG
T ss_pred             ccccCcCcCchhhh------------hcc-cCCcCeecHHHHHHHHhcC--CccCCCccccccc
Confidence            44689999999988            654 4699999999999999862  6789999997653

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=2.2e-10  Score=80.45  Aligned_cols=48  Identities=21%  Similarity=0.482  Sum_probs=40.5

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCcccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWK  217 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~  217 (220)
                      ++-.|+||++.|.+            |+++ .|||.|+..||..|++.+  ...||+|+.++.
T Consensus         7 ~~l~CpIc~~~m~d------------PV~~-~cgh~fc~~ci~~~~~~~--~~~cP~~~~~l~   54 (78)
T d1t1ha_           7 EYFRCPISLELMKD------------PVIV-STGQTYERSSIQKWLDAG--HKTCPKSQETLL   54 (78)
T ss_dssp             SSSSCTTTSCCCSS------------EEEE-TTTEEEEHHHHHHHHTTT--CCBCTTTCCBCS
T ss_pred             ccCCCcCcCchhhC------------ceEc-cCCCcchHHHHHHHHHHC--CCCCCcccccCC
Confidence            34689999999988            6655 599999999999999872  567999999764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.4e-09  Score=79.90  Aligned_cols=49  Identities=16%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhCCCCCCCCCcCccccc
Q psy14827        155 NDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQQVHHQCPMCRQEWKF  218 (220)
Q Consensus       155 ~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~~~~~sCPvCR~e~~~  218 (220)
                      ++-.|+||++.|.+            |+++..|||.|++.||..||..   +..||+||+++..
T Consensus        21 ~~f~CPI~~~lm~d------------PV~~~~~~~ty~r~~I~~~l~~---~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCD------------PVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSS------------EEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCT
T ss_pred             HHhCCcCchhHHHH------------HHhcccccchhhHHHHHHHHHh---cCCcccccccccc
Confidence            44689999999988            7777756678999999999998   8899999998653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.1e-08  Score=69.99  Aligned_cols=48  Identities=17%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             CcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHhC--C---CCCCCCCcC
Q psy14827        156 DDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNSQ--Q---VHHQCPMCR  213 (220)
Q Consensus       156 ~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~~--~---~~~sCPvCR  213 (220)
                      ...|+||++++...          .....+.|||.||..||..|+...  +   ..-.||.|+
T Consensus         5 ~~~C~IC~~~~~~~----------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVE----------QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGG----------GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCC----------ceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            36899999998652          134455699999999999999752  1   123699854

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.032  Score=34.46  Aligned_cols=47  Identities=30%  Similarity=0.722  Sum_probs=30.5

Q ss_pred             ccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHHHHh-CCCCCCCCCcCc
Q psy14827        158 TCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQ  214 (220)
Q Consensus       158 ~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~  214 (220)
                      .|.||...-..          +..+.--.|...||..|+.+-+.. ..+.=.||.||.
T Consensus         2 ~C~vC~~~~~~----------~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED----------DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC----------SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC----------CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            48888654321          223333469999999999887654 123446999975

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=0.19  Score=34.71  Aligned_cols=35  Identities=26%  Similarity=0.719  Sum_probs=24.2

Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCceecCCCCcchHHHHHHH
Q psy14827        154 ANDDTCGICRIAFEGCCSDCKLPGDDCPLVWGQCSHCFHIHCIMKW  199 (220)
Q Consensus       154 ~~~~~CaICLe~f~~~~~~~~~p~~~~~~~~~~CgHvFH~~CI~~W  199 (220)
                      ..|..|.|| +.|....+   .|      .. .|+-+||..|+.+-
T Consensus        13 ~~D~mC~vC-~v~t~~~l---~p------CR-vCtRv~H~~CL~r~   47 (89)
T d1wila_          13 VNDEMCDVC-EVWTAESL---FP------CR-VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTT-CCCCSSCC---SS------CS-SSSSCCCHHHHHHH
T ss_pred             CcCcccccc-Ccccccce---ec------ce-eecchhhHHHHHHh
Confidence            356789999 77755211   11      11 39999999999986

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.76  E-value=0.17  Score=33.20  Aligned_cols=31  Identities=29%  Similarity=0.803  Sum_probs=23.4

Q ss_pred             cCCCCcchHHHHHHHHHh-CCCCCCCCCcCcc
Q psy14827        185 GQCSHCFHIHCIMKWLNS-QQVHHQCPMCRQE  215 (220)
Q Consensus       185 ~~CgHvFH~~CI~~WL~~-~~~~~sCPvCR~e  215 (220)
                      -.|...||..|+.+.+.. ..+.=.||.|+..
T Consensus        23 d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1          23 NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             TTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            359999999999988755 1235569999764