Psyllid ID: psy14868

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MDLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLSSGLPDSEWLAYVVACVSVSGSSLD
Secondary Structure (PSIPRED)
cccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHccccccccccccccEEEcccccccccccEEEcccccccHHHHHEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEccccccccccccccccccEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcEEEEcccccccccccEEEEEccccEEEccccccEEEEcccccccccccEEEcccccccHHHEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mdlfsctcQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLgqddlyavgtkasdqplsgrprrpdlRAYITSKITARKADIIIQdytsgallTGELKKILIDTITPIVTHHQEAMKgvteehgkltssssgrpdrytdqiYLTSTHyqvdltgrpdqvylssglpdsrpdqvylssglpdseWLAYVVACVSVSGSSLD
Flexible Loop (DISEMBL)
MDLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVgtkasdqplsgrprrpdLRAYITskitarkadiiIQDYTSGALLTGELKKILIDTITPIVTHHQEamkgvteehgkltssssgrpdrYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLSSGLPDSEWLAYVVACVSVSGSSLD
Low Complexity Region (SEG)
MDLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLSSGLPDSEWLAYVVACVSVSGSSLD
Disordered region (IsUnstruct)
**LFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGT***************LRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHH************************YTDQIYLTSTHYQVDLTGRPDQVYL***********VYLSSGLPDSEWLAYVVACVSV******
Disordered Region (DISOPRED)
*DLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVG************RRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLS******RPDQVYLSSGLPDSEWLAYVVACVSVSGS***
Disordered Region (DISEMBL)
MDLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTK********RPRRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK***************RPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLSSGLPDSEWLAYVVACVSVSGSSLD
Disordered Region (DISPRO)
*DLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLSSGLPDSEWLAYVVACVSVS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLFSCTCQVYLIVNAFITTILRKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRYTDQIYLTSTHYQVDLTGRPDQVYLSSGLPDSRPDQVYLSSGLPDSEWLAYVVACVSVSGSSLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
P32921	481	Tryptophan--tRNA ligase,	yes	N/A	0.191	0.083	0.625	2e-07
Q6P7B0	481	Tryptophan--tRNA ligase,	yes	N/A	0.191	0.083	0.625	2e-07
P23612	475	Tryptophan--tRNA ligase,	yes	N/A	0.210	0.092	0.568	2e-06
Q5R4J1	472	Tryptophan--tRNA ligase,	yes	N/A	0.210	0.093	0.545	2e-06
P23381	471	Tryptophan--tRNA ligase,	yes	N/A	0.210	0.093	0.545	2e-06
P17248	476	Tryptophan--tRNA ligase,	no	N/A	0.210	0.092	0.545	4e-06

>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I +DYTSGA+LTGELKK LID + P++  HQ   K VTEE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2

>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I +DYTSGA+LTGELKK LID + P++  HQ   K VTEE
Sbjct: 420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DY+SGA+LTGELKK LID + P+V  HQ   K VT+E
Sbjct: 416 KLEQIRKDYSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDE 459

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 413 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 456

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 412 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 455

Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 417 KLEQIRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDE 460

T1-TrpRS has aminoacylation activity while T2-TrpRS lacks it. T1-TrpRS and T2-TrpRS possess angiostatic activity. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
349804413	244	putative tryptophanyl-trna synthetase [H	0.248	0.213	0.596	3e-08
432936809	493	PREDICTED: tryptophan--tRNA ligase, cyto	0.191	0.081	0.7	3e-07
348531539	476	PREDICTED: tryptophanyl-tRNA synthetase,	0.215	0.094	0.622	6e-07
147899131	475	tryptophanyl-tRNA synthetase [Xenopus la	0.191	0.084	0.675	9e-07
410898559	464	PREDICTED: tryptophan--tRNA ligase, cyto	0.191	0.086	0.675	1e-06
113931542	475	tryptophanyl-tRNA synthetase [Xenopus (S	0.191	0.084	0.675	1e-06
91093979	411	PREDICTED: similar to Tryptophanyl-tRNA	0.210	0.107	0.636	3e-06
47230042	472	unnamed protein product [Tetraodon nigro	0.191	0.084	0.625	4e-06
41152126	463	tryptophanyl-tRNA synthetase, cytoplasmi	0.191	0.086	0.65	5e-06
55777372	463	Tryptophanyl-tRNA synthetase [Danio reri	0.191	0.086	0.65	5e-06

>gi|349804413|gb|AEQ17679.1| putative tryptophanyl-trna synthetase [Hymenochirus curtipes]

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query: 80  ITSKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           +  +I   K + I QDYTSGALLTGELKKILIDT+ P++  HQE  K +TEE
Sbjct: 179 VAPRIDDEKLEQIRQDYTSGALLTGELKKILIDTLQPMIAAHQERRKQITEE 230

Source: Hymenochirus curtipes

Species: Hymenochirus curtipes

Genus: Hymenochirus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432936809|ref|XP_004082290.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Oryzias latipes]

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY+SGALLTGELKKILI+T+ P++  HQE  K VTEE
Sbjct: 439 IKQDYSSGALLTGELKKILIETLQPMIAQHQERRKQVTEE 478

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348531539|ref|XP_003453266.1| PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic-like [Oreochromis niloticus]

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 87  RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
            K + I +DYTSGALLTGELKKILI+T+ P++  HQE  K VT+E
Sbjct: 417 EKLEKIKEDYTSGALLTGELKKILIETLQPMIAQHQERRKQVTDE 461

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147899131|ref|NP_001084545.1| tryptophanyl-tRNA synthetase [Xenopus laevis] gi|46250198|gb|AAH68695.1| MGC81110 protein [Xenopus laevis]

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY+SGALLTGELKKILI+T+ P++  HQE  K +TEE
Sbjct: 421 IKQDYSSGALLTGELKKILIETLQPLIAAHQERRKHITEE 460

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410898559|ref|XP_003962765.1| PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Takifugu rubripes]

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY SGALLTGELKK+LIDT+ P++  HQE  K VT+E
Sbjct: 410 IRQDYASGALLTGELKKMLIDTLQPMIAQHQERRKQVTDE 449

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|113931542|ref|NP_001039220.1| tryptophanyl-tRNA synthetase [Xenopus (Silurana) tropicalis] gi|89272489|emb|CAJ82616.1| tryptophanyl-tRNA synthetase [Xenopus (Silurana) tropicalis] gi|189441894|gb|AAI67428.1| LOC734080 protein [Xenopus (Silurana) tropicalis]

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY+SGALLTGELKK+LI+T+ P++  HQE  K VTEE
Sbjct: 421 IKQDYSSGALLTGELKKLLIETLQPMIAAHQERRKHVTEE 460

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91093979|ref|XP_969006.1| PREDICTED: similar to Tryptophanyl-tRNA synthetase, cytoplasmic (Tryptophan--tRNA ligase) (TrpRS) (Interferon-induced protein 53) (IFP53) (hWRS) [Tribolium castaneum] gi|270010919|gb|EFA07367.1| hypothetical protein TcasGA2_TC016342 [Tribolium castaneum]

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGALLTGELKKIL+D +TPIV  HQE    VT++
Sbjct: 353 KLEQIRKDYTSGALLTGELKKILVDILTPIVMQHQERRAKVTDD 396

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47230042|emb|CAG10456.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY SGALLTGELKK+LI+T+ P++  HQE  K +T+E
Sbjct: 420 IRQDYASGALLTGELKKLLIETLQPMIAQHQERRKHITDE 459

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41152126|ref|NP_957066.1| tryptophanyl-tRNA synthetase, cytoplasmic [Danio rerio] gi|37590880|gb|AAH59603.1| Tryptophanyl-tRNA synthetase [Danio rerio]

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY+SGA+LTGELKK LIDT+ PI+  HQE  K VT++
Sbjct: 409 IRQDYSSGAMLTGELKKSLIDTLQPIIAEHQEKRKHVTDD 448

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|55777372|gb|AAH49526.1| Tryptophanyl-tRNA synthetase [Danio rerio]

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I QDY+SGA+LTGELKK LIDT+ PI+  HQE  K VT++
Sbjct: 409 IRQDYSSGAMLTGELKKSLIDTLQPIIAEHQEKRKHVTDD 448

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
ZFIN|ZDB-GENE-040426-1742	463	wars "tryptophanyl-tRNA synthe	0.191	0.086	0.65	1.1e-06
MGI|MGI:104630	481	Wars "tryptophanyl-tRNA synthe	0.191	0.083	0.625	3.6e-06
RGD|1308278	481	Wars "tryptophanyl-tRNA synthe	0.191	0.083	0.625	3.6e-06
UNIPROTKB|Q6P7B0	481	Wars "Tryptophan--tRNA ligase,	0.191	0.083	0.625	3.6e-06
UNIPROTKB|E1C2Z5	473	WARS "Uncharacterized protein"	0.210	0.093	0.545	8.3e-06
UNIPROTKB|P23381	471	WARS "Tryptophan--tRNA ligase,	0.210	0.093	0.545	1.9e-05
UNIPROTKB|P17248	476	WARS "Tryptophan--tRNA ligase,	0.210	0.092	0.545	3.5e-05
UNIPROTKB|F1SAP4	482	WARS "Uncharacterized protein"	0.191	0.082	0.55	4.6e-05
UNIPROTKB|E2RGG9	476	WARS "Uncharacterized protein"	0.210	0.092	0.522	0.00011
FB|FBgn0010803	430	Aats-trp "Tryptophanyl-tRNA sy	0.172	0.083	0.527	0.00081

ZFIN|ZDB-GENE-040426-1742 wars "tryptophanyl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query:    92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             I QDY+SGA+LTGELKK LIDT+ PI+  HQE  K VT++
Sbjct:   409 IRQDYSSGAMLTGELKKSLIDTLQPIIAEHQEKRKHVTDD 448

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

MGI|MGI:104630 Wars "tryptophanyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query:    92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             I +DYTSGA+LTGELKK LID + P++  HQ   K VTEE
Sbjct:   420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=ISO

RGD|1308278 Wars "tryptophanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query:    92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             I +DYTSGA+LTGELKK LID + P++  HQ   K VTEE
Sbjct:   420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459

GO:0001525 "angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA;ISO

UNIPROTKB|Q6P7B0 Wars "Tryptophan--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query:    92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             I +DYTSGA+LTGELKK LID + P++  HQ   K VTEE
Sbjct:   420 IRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE 459

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

UNIPROTKB|E1C2Z5 WARS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query:    88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             K + + Q YTSG LLTGELKK+LI+T+ P++  HQE  K +T+E
Sbjct:   415 KLEQLKQAYTSGELLTGELKKVLIETLQPLIAAHQERRKQITDE 458

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

UNIPROTKB|P23381 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query:    88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct:   412 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 455

GO:0001525 "angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=NAS;TAS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0045765 "regulation of angiogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|P17248 WARS "Tryptophan--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query:    88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct:   417 KLEQIRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDE 460

GO:0005737 "cytoplasm" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|F1SAP4 WARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 121 (47.7 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query:    92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             I +DY+SGA+LTGELKK+LI+ + P++  HQ   K VT+E
Sbjct:   421 IRKDYSSGAMLTGELKKVLIEVLQPLIAEHQARRKEVTDE 460

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

UNIPROTKB|E2RGG9 WARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:    88 KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             K + I +DYTSG +LTGELKK LI+ + P++  HQ   K VT+E
Sbjct:   417 KLEQIRKDYTSGDMLTGELKKTLIEVLQPLIAEHQARRKEVTDE 460

GO:0045765 "regulation of angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

FB|FBgn0010803 Aats-trp "Tryptophanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 110 (43.8 bits), Expect = 0.00081, P = 0.00081
 Identities = 19/36 (52%), Positives = 28/36 (77%)

Query:    96 YTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
             Y+ G +LTGE+KK+ ++T+TPIV  HQ A K +T+E
Sbjct:   380 YSKGEMLTGEIKKLAVETLTPIVEQHQAARKLITDE 415


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       209   0.00079  112 3  11 22  0.36    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.92u 0.08s 18.00t   Elapsed:  00:00:12
  Total cpu time:  17.92u 0.08s 18.00t   Elapsed:  00:00:12
  Start:  Thu Aug 15 14:21:47 2013   End:  Thu Aug 15 14:21:59 2013

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS;IDA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
PLN02486	383	PLN02486, PLN02486, aminoacyl-tRNA ligase	6e-08
PRK12285	368	PRK12285, PRK12285, tryptophanyl-tRNA synthetase;	8e-04

>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I ++Y SG +LTGE+KK LI+ +T IV  HQ A   VT+E
Sbjct: 332 IKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDE 371

Length = 383

>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I ++  SG LL GE KK   + I   +  HQE  +   E 
Sbjct: 318 IYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEAREI 357

Length = 368

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PLN02486	383	aminoacyl-tRNA ligase	99.97
KOG2145|consensus	397		99.97
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	99.96
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	99.96
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	99.93
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	99.92
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	99.91
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	99.9
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	99.9
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	99.89
PRK08560	329	tyrosyl-tRNA synthetase; Validated	99.86
PLN02886	389	aminoacyl-tRNA ligase	99.85
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	99.8
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	99.78
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	99.74
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	99.59
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	99.56
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	99.42
KOG2144|consensus	360		99.4
PRK05912	408	tyrosyl-tRNA synthetase; Validated	99.38
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	99.33
KOG2713|consensus	347		99.07
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	98.73
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	96.91
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	95.69

>PLN02486 aminoacyl-tRNA ligase

Probab=99.97  E-value=5.3e-31  Score=243.24  Aligned_cols=123  Identities=25%  Similarity=0.286  Sum_probs=111.5

Q ss_pred             hhcCcccee--eeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC-------------CCCccchhhhhcc
Q psy14868         20 TILRKVAVV--QVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG-------------RPRRPDLRAYITS   82 (209)
Q Consensus        20 ~~~~~~~~~--~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG-------------gpeTcdVF~YlkF   82 (209)
                      -|.++|+.+  +|++||+|  +|||+|+|+|+|||+|+ |++|++||++||+||             +|++|++|+|++|
T Consensus       243 ~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~-p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~  321 (383)
T PLN02486        243 LGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDT-PKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNF  321 (383)
T ss_pred             hCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCC-HHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHH
Confidence            355678776  79999999  79999999999999997 999999999988764             4555777999994


Q ss_pred             -cCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868         83 -KITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP  143 (209)
Q Consensus        83 -~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~  143 (209)
                       .+||+++++|+++|++|+|+|||||+.|++.|+++|++|||||++++++.|++||.+++++
T Consensus       322 f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~  383 (383)
T PLN02486        322 FLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP  383 (383)
T ss_pred             HcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence             7677899999999999999999999999999999999999999999999999999999864

>KOG2145|consensus

Probab=99.97  E-value=4.1e-31  Score=239.64  Aligned_cols=123  Identities=28%  Similarity=0.324  Sum_probs=115.0

Q ss_pred             hhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCc------------cch-hhhhcc
Q psy14868         20 TILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRR------------PDL-RAYITS   82 (209)
Q Consensus        20 ~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeT------------cdV-F~YlkF   82 (209)
                      --.+|||.  +.|.+.|+|  +|||||+|+|+|||+|+ +++|++||+++|||||++|            +|| |+|++|
T Consensus       256 lg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt-~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsF  334 (397)
T KOG2145|consen  256 LGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDT-AKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSF  334 (397)
T ss_pred             hCCCCcceeehhhchhhhCcccccccCCCCceEEecCc-HHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHH
Confidence            34678886  589999998  59999999999999999 9999999999999999998            677 999995


Q ss_pred             -cCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868         83 -KITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP  143 (209)
Q Consensus        83 -~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~  143 (209)
                       .+||++||+++.+|.+|+|++||+||+|+++|++++++||++|++++|+.|++||.+++++
T Consensus       335 FldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~  396 (397)
T KOG2145|consen  335 FLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLS  396 (397)
T ss_pred             HhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCC
Confidence             8899999999999999999999999999999999999999999999999999999998764

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=3.5e-29  Score=226.63  Aligned_cols=120  Identities=20%  Similarity=0.162  Sum_probs=104.0

Q ss_pred             hcCccceee--eecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCC----------CCCCCccchhhhhc-ccCCH
Q psy14868         21 ILRKVAVVQ--VIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPL----------SGRPRRPDLRAYIT-SKITA   86 (209)
Q Consensus        21 ~~~~~~~~~--~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~----------pGgpeTcdVF~Ylk-F~eDD   86 (209)
                      .+|++-.-|  +|+||+| +|||+|+|+|+|||+|+ |++|+|||++|+.          +|.|+.|+||+||. |.+++
T Consensus       178 ~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~-~~~i~kKI~~~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~  256 (314)
T COG0180         178 PLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDD-PKTIRKKIKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFEDD  256 (314)
T ss_pred             CCccccccCCCcccCCCCCCcccccCCCCeeeccCC-HHHHHHHHHHhccCCCCccccCCCCCCCcchHHHHHHHhcCCC
Confidence            456666778  9999999 89999999999999997 9999999999733          46799999999999 55444


Q ss_pred             HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCc
Q psy14868         87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGR  142 (209)
Q Consensus        87 eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l  142 (209)
                       +.++|+++|++|+++|||||+.|++.|+++|+||||||+++.++.  +++++..|..
T Consensus       257 -~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~il~~g~~  313 (314)
T COG0180         257 -SILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDDILRKGAE  313 (314)
T ss_pred             -cHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccCC
Confidence             445999999999999999999999999999999999999998866  6666665543

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=99.96  E-value=6.8e-29  Score=227.91  Aligned_cols=118  Identities=20%  Similarity=0.203  Sum_probs=106.2

Q ss_pred             cCcccee--eeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC-------------CCCccchhhhhc-cc-C
Q psy14868         22 LRKVAVV--QVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG-------------RPRRPDLRAYIT-SK-I   84 (209)
Q Consensus        22 ~~~~~~~--~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG-------------gpeTcdVF~Ylk-F~-e   84 (209)
                      +++|+.+  +|++||+|+|||+|+|+|+|||+|+ |++|++||++ |+||             +|+.|+||+|++ |. +
T Consensus       233 f~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~D~-p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~  310 (368)
T PRK12285        233 FIKPSSTYHKFMPGLTGGKMSSSKPESAIYLTDD-PETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEE  310 (368)
T ss_pred             CCCchhHhhhcccCCCCCcCCCCCCCCeeeccCC-HHHHHHHHHh-CcCCCCcccccccccCCCCCcchHHHHHHHHhcC
Confidence            5666654  7999999999999999999999997 9999999999 7765             355688899999 44 6


Q ss_pred             CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868         85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR  142 (209)
Q Consensus        85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l  142 (209)
                      ||+++++|+++|++|+++|||||+.|++.|+++|+||||||+++++ .|++|+...++
T Consensus       311 ~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~  367 (368)
T PRK12285        311 DDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL  367 (368)
T ss_pred             CCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence            7889999999999999999999999999999999999999999998 89999987654

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=99.93  E-value=2.7e-26  Score=213.33  Aligned_cols=122  Identities=15%  Similarity=0.073  Sum_probs=108.8

Q ss_pred             hcCccce----eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCC----------CCCCCccchhhhhcccCCH
Q psy14868         21 ILRKVAV----VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPL----------SGRPRRPDLRAYITSKITA   86 (209)
Q Consensus        21 ~~~~~~~----~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~----------pGgpeTcdVF~YlkF~eDD   86 (209)
                      +++.|..    .++++||+|+|||+|+ .++|+|+|+ |++|++||+++ +          +|.|++|+||+||.+..|+
T Consensus       243 ~~~~P~~~~~~~~~I~gLdg~KMSKS~-~n~I~L~Ds-~~~I~kKI~~a-~TDs~~~~~~~~g~Pe~~nl~~i~~~~~~~  319 (398)
T PRK12283        243 ILPEPQALLTEASKMPGLDGQKMSKSY-GNTIGLRED-PESVTKKIRTM-PTDPARVRRTDPGDPEKCPVWQLHQVYSDE  319 (398)
T ss_pred             ccCCCcccccCCCcccCCCCCcCCCCC-CCeeeCcCC-HHHHHHHHHhC-CCCCcccccCCCCCCCcCHHHHHHHHhCCC
Confidence            3566654    6899999999999995 579999997 99999999995 3          5889999999999965677


Q ss_pred             HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCcccc
Q psy14868         87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDR  145 (209)
Q Consensus        87 eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~  145 (209)
                      +++++++++|++|+++||+||+.|+|.|.++|+|||||++++.++.  |++.+..|.++|+
T Consensus       320 ~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~  380 (398)
T PRK12283        320 ETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKAR  380 (398)
T ss_pred             hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999998755  9999999988765

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=99.92  E-value=4.1e-25  Score=199.55  Aligned_cols=115  Identities=24%  Similarity=0.264  Sum_probs=99.6

Q ss_pred             ecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC----------CCc---cchhhhhc-ccCCHHHHHHHHHHc
Q psy14868         31 IRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR----------PRR---PDLRAYIT-SKITARKADIIIQDY   96 (209)
Q Consensus        31 ~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg----------peT---cdVF~Ylk-F~eDDeeLEeI~~~c   96 (209)
                      ++||+|.|||+|+|+|+|||+|+ |++|++||+++..+++          |+.   +.+|+|+. |..+|++++++.++|
T Consensus       185 l~gl~~~KMSKS~~~s~I~L~D~-~e~I~~KI~~a~td~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~  263 (328)
T TIGR00233       185 LMGLSGKKMSKSDPNSAIFLTDT-PKQIKKKIRKAATDGGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKY  263 (328)
T ss_pred             CCCCCCCcCCCCCCCCeEeecCC-HHHHHHHHHhcCCCCCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHH
Confidence            55777789999999999999997 9999999999644333          333   44588888 465677899999999


Q ss_pred             ccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccccc
Q psy14868         97 TSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRY  146 (209)
Q Consensus        97 rsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~~  146 (209)
                      .+|+++||+||+.|++.|+++|+|+||||++++++.|++++..|..+|+.
T Consensus       264 ~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~l~~g~~~a~~  313 (328)
T TIGR00233       264 KSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKILEPGAKKARE  313 (328)
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876553

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=99.91  E-value=1.6e-24  Score=195.70  Aligned_cols=115  Identities=14%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             eeecccCCC--CCCCCCCC--CeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhcccCCHHHHHH
Q psy14868         29 QVIRILLHS--KSNTTDLI--ISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYITSKITARKADI   91 (209)
Q Consensus        29 ~~~~gL~gg--KMSsS~p~--SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~YlkF~eDDeeLEe   91 (209)
                      .+++||+|+  |||+|+|+  |+|||+|+ |++|++||++ |+|             |+|++|+||+|+++.. ++++++
T Consensus       182 ~~l~gL~g~~~KMSKS~~~~~~~I~l~D~-~~~I~~KI~~-a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~~-~~~~ee  258 (333)
T PRK00927        182 ARVMGLDGPTKKMSKSDPNDNNTINLLDD-PKTIAKKIKK-AVTDSERLREIRYDLPNKPEVSNLLTIYSALS-GESIEE  258 (333)
T ss_pred             ccccCCCCCCCCCCCCCCCCCCeEEeeCC-HHHHHHHHHh-CCCCCCcccccccCCCCCCccccHHHHHHHhC-CCCHHH
Confidence            349999998  99999998  99999997 9999999999 663             3377788999999533 357899


Q ss_pred             HHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        92 I~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      ++++|++|+++|||||+.|++.|+++|+|+||||++++++.  |++.+..|.++|+.
T Consensus       259 l~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~G~~~a~~  315 (333)
T PRK00927        259 LEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAEGAEKARA  315 (333)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998755  99999999988764

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=99.90  E-value=1.7e-24  Score=196.23  Aligned_cols=116  Identities=12%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             eeeecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhcc-cCCHHHHHHHHHH
Q psy14868         28 VQVIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYITS-KITARKADIIIQD   95 (209)
Q Consensus        28 ~~~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~YlkF-~eDDeeLEeI~~~   95 (209)
                      ..+++||+| +|||+|++ ++|||+|+ |++|++||++ |+|          |.|+.|++|+|+++ .++++++++++++
T Consensus       185 ~~~i~~L~g~~KMSKS~~-~~I~L~D~-pe~I~kKI~~-A~td~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~  261 (333)
T PRK12282        185 AGRLPGLDGKAKMSKSLG-NAIYLSDD-ADTIKKKVMS-MYTDPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAH  261 (333)
T ss_pred             CCcccCCCCCCcCCCCCC-CeeeeeCC-HHHHHHHHHh-CcCCCCCccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHH
Confidence            348999998 89999996 59999997 9999999999 664          56777889999994 5567899999999


Q ss_pred             cccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         96 YTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        96 crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      |++|+++|+|||+.|++.|+++|+|+||||++++.+.  |++.+..|..+|+-
T Consensus       262 y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~vl~~G~~ka~~  314 (333)
T PRK12282        262 YQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEILKAGSEKARE  314 (333)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998754  99999999887654

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=99.90  E-value=2e-24  Score=195.81  Aligned_cols=116  Identities=12%  Similarity=0.017  Sum_probs=102.4

Q ss_pred             eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCC-------CCCCCccchhhhhcccCCHHHHHHHHHHcccCc
Q psy14868         28 VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPL-------SGRPRRPDLRAYITSKITARKADIIIQDYTSGA  100 (209)
Q Consensus        28 ~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------pGgpeTcdVF~YlkF~eDDeeLEeI~~~crsG~  100 (209)
                      .++++||+|+|||+|++ ++|+|+|+ |++|++||+++..       +|+|++|++|+|+++..+++++++++++|++ +
T Consensus       192 ~~~l~gLdg~KMSKS~~-n~I~L~D~-p~~I~kKI~ka~Td~~~~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~-~  268 (332)
T PRK12556        192 GAILPGLDGRKMSKSYG-NVIPLFAE-QEKLRKLIFKIKTDSSLPNEPKDPETSALFTIYKEFATEEEVQSMREKYET-G  268 (332)
T ss_pred             cccccCCCCCCCCCCCC-CcccccCC-HHHHHHHHHHhccCCCcccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhc-C
Confidence            68999999999999996 67999997 9999999999521       3678889999999953355689999999988 8


Q ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868        101 LLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus       101 IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      ++||+||+.|++.|+++|+|+||||+++.++.  |++.+..|..+||-
T Consensus       269 ~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~~~~il~~G~~kA~~  316 (332)
T PRK12556        269 IGWGDVKKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGAERARE  316 (332)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998755  99999999887764

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=99.89  E-value=7.4e-24  Score=198.76  Aligned_cols=115  Identities=11%  Similarity=-0.008  Sum_probs=102.6

Q ss_pred             eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCC--------CCCCCccchhhhhcccCCHHHHHHHHHHcccC
Q psy14868         28 VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPL--------SGRPRRPDLRAYITSKITARKADIIIQDYTSG   99 (209)
Q Consensus        28 ~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~--------pGgpeTcdVF~YlkF~eDDeeLEeI~~~crsG   99 (209)
                      +..++||+|+|||+|+ +|+|+|+|+ |++|++||++ |+        +|.|++|+||+||++..++++.++++++|+ |
T Consensus       192 ~~~I~gLdg~KMSKS~-~n~I~L~Ds-~~~I~kKI~~-A~TDs~~~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~-~  267 (431)
T PRK12284        192 VATLPGLDGRKMSKSY-DNTIPLFAP-REELKKAIFS-IVTDSRAPGEPKDTEGSALFQLYQAFATPEETAAFRQALA-D  267 (431)
T ss_pred             cccccCCCCccccCCC-CCEeeecCC-HHHHHHHHhc-CCCCCCCCCCCCCCCcchHHHHHHHhCCcchHHHHHHHHh-c
Confidence            4689999999999998 589999997 9999999999 55        588888999999995445567899999998 5


Q ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868        100 ALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus       100 ~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      +++||+||+.|+|.|.++|+|+||||+++.++.  |++++..|.++|+.
T Consensus       268 g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~l~~iL~~Ga~kAr~  316 (431)
T PRK12284        268 GIGWGDAKQRLFERIDRELAPMRERYEALIARPADIEDILLAGAAKARR  316 (431)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999998755  99999999887664

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=99.86  E-value=7.7e-22  Score=177.89  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=89.9

Q ss_pred             eeeecccCCC--CCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhcc-cCCH----------------
Q psy14868         28 VQVIRILLHS--KSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYITS-KITA----------------   86 (209)
Q Consensus        28 ~~~~~gL~gg--KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~YlkF-~eDD----------------   86 (209)
                      ..+++||+|.  |||+|+|+|+|+|+|+ |++|++||++ |+|  |.++.|+||+|+++ ..++                
T Consensus       202 ~~~l~~L~g~~~KMSKS~p~~~I~L~D~-~~~I~~KI~k-A~t~~~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~  279 (329)
T PRK08560        202 TPLLTGLDGGGIKMSKSKPGSAIFVHDS-PEEIRRKIKK-AYCPPGEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDL  279 (329)
T ss_pred             cCccCCCCCCCCCCcCCCCCCeecccCC-HHHHHHHHHh-ccCCCCCcCCCcHHHHHHHHhhccccceEEechhhcCCCC
Confidence            4788999998  9999999999999997 9999999999 774  55777999999994 3231                


Q ss_pred             --HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868         87 --RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus        87 --eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                        ++.++++++|++|+++||+||+.|++.|+++|+|+|||+++-.+
T Consensus       280 ~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~~~~~  325 (329)
T PRK08560        280 EYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLEEGPE  325 (329)
T ss_pred             CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence              47899999999999999999999999999999999999987543

>PLN02886 aminoacyl-tRNA ligase

Probab=99.85  E-value=1.9e-21  Score=180.55  Aligned_cols=113  Identities=12%  Similarity=0.092  Sum_probs=94.8

Q ss_pred             eeecccCC--CCCCCCCCC--CeEEccCCChHHHHHHhhcCCC-----------CCCCCccchhhhhcccCCHHHHHHHH
Q psy14868         29 QVIRILLH--SKSNTTDLI--ISLFLGQDDLYAVGTKASDQPL-----------SGRPRRPDLRAYITSKITARKADIII   93 (209)
Q Consensus        29 ~~~~gL~g--gKMSsS~p~--SaI~LsDt~peeIrkKI~k~A~-----------pGgpeTcdVF~YlkF~eDDeeLEeI~   93 (209)
                      +.+.||+|  +|||+|+|+  |+|||+|+ +++|++||++ |.           ||.|++|++|.+|.... +++.++|+
T Consensus       240 ~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds-~e~I~kKI~~-a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~-~~~~eei~  316 (389)
T PLN02886        240 ARVMSLTDGTSKMSKSAPSDQSRINLLDP-PDVIANKIKR-CKTDSFPGLEFDNPERPECNNLLSIYQLVT-GKTKEEVL  316 (389)
T ss_pred             ceeeeCCCCCCcCCCCCCCCCCeEEecCC-HHHHHHHHhc-CCCCCCCCccCCCCCCcccccHHHHHHHcc-CCCHHHHH
Confidence            45667766  599999986  89999997 9999999999 54           35556678888888332 34679999


Q ss_pred             HHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         94 QDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        94 ~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      ++|+  +++||+||+.|++.|+++|+||||||+++.++.  |++.+..|.++||-
T Consensus       317 ~~~~--~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga~kAr~  369 (389)
T PLN02886        317 AECG--DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGADAAAE  369 (389)
T ss_pred             HHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            9996  779999999999999999999999999998755  99999999887764

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=99.80  E-value=1.1e-19  Score=160.88  Aligned_cols=94  Identities=21%  Similarity=0.250  Sum_probs=80.5

Q ss_pred             cCcccee--eeecccCCC--CCCCCCCCCeEEccCCChHHHHHHhhcCCC----------CCCCCccchhhhhc-c-cCC
Q psy14868         22 LRKVAVV--QVIRILLHS--KSNTTDLIISLFLGQDDLYAVGTKASDQPL----------SGRPRRPDLRAYIT-S-KIT   85 (209)
Q Consensus        22 ~~~~~~~--~~~~gL~gg--KMSsS~p~SaI~LsDt~peeIrkKI~k~A~----------pGgpeTcdVF~Ylk-F-~eD   85 (209)
                      .|.+..-  .+++||+|+  |||+|+|+|+|+|+|+ |++|++|||++..          +|+|+.|++|+|++ | .+|
T Consensus       171 ~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~-~~~i~~KI~~a~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (280)
T cd00806         171 KPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDS-PKEIKKKIMKAATDGGRTEHRRDGGGPGVSNLVEIYSAFFNDD  249 (280)
T ss_pred             CCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCC-HHHHHHHHHhccCCCCCceecCCCCCCCcChHHHHHHHHhCCC
Confidence            3444444  899999997  9999999999999997 9999999999522          24677799999999 5 677


Q ss_pred             HHHHHHHHHHcccCccchHHHHHHHHHHHHHH
Q psy14868         86 ARKADIIIQDYTSGALLTGELKKILIDTITPI  117 (209)
Q Consensus        86 DeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~  117 (209)
                      +++++++ ++|++|+++||+||+.|++.|+++
T Consensus       250 ~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~  280 (280)
T cd00806         250 DEELEEI-DEYRSGGLGYGECKKLLAEAIQEF  280 (280)
T ss_pred             HHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence            7888888 999999999999999999999864

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=99.78  E-value=5.1e-19  Score=163.70  Aligned_cols=99  Identities=21%  Similarity=0.288  Sum_probs=85.4

Q ss_pred             eeeecccC-C-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhcc-c---------CC-H------
Q psy14868         28 VQVIRILL-H-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYITS-K---------IT-A------   86 (209)
Q Consensus        28 ~~~~~gL~-g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~YlkF-~---------eD-D------   86 (209)
                      ..+++||+ | +|||+|+|+++|+|+|+ |++|++|||+ |++  |.++.+++++|+++ .         .+ +      
T Consensus       245 ~~~lpgL~dg~~KMSKS~~ns~I~L~Ds-pe~I~kKI~k-A~t~p~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~  322 (383)
T PTZ00126        245 HHMLPGLLEGQEKMSKSDPNSAIFMEDS-EEDVNRKIKK-AYCPPGVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDV  322 (383)
T ss_pred             ccccccCCCCCCCCCcCCCCCeecCCCC-HHHHHHHHHh-CcCCCCCCCCCcchhhhhhcccccccceeEeccccccCcc
Confidence            47888996 4 59999999999999997 9999999999 774  55677888998883 1         11 1      


Q ss_pred             --HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy14868         87 --RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGV  128 (209)
Q Consensus        87 --eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~el  128 (209)
                        ++.++++++|++|+++|++||+.|++.|+++|+|+|+|+++=
T Consensus       323 ~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~  366 (383)
T PTZ00126        323 TYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNN  366 (383)
T ss_pred             CcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              478999999999999999999999999999999999999754

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=99.74  E-value=3.9e-18  Score=167.60  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=86.1

Q ss_pred             eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCC-------------CCCC----Cccchhhhhcc--cCC-
Q psy14868         28 VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPL-------------SGRP----RRPDLRAYITS--KIT-   85 (209)
Q Consensus        28 ~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------------pGgp----eTcdVF~YlkF--~eD-   85 (209)
                      .++++||+|  +|||+|+|+|+|||+|+ |++|++||++ |+             +|+|    +.|+||+|+++  .+. 
T Consensus       210 ~~~LpGL~gg~~KMSKS~p~naI~L~Ds-pe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~  287 (682)
T PTZ00348        210 HHMLAGLKQGQAKMSKSDPDSAIFMEDT-EEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARP  287 (682)
T ss_pred             cccCcCCCCCCCcCCCCCCCCeecccCC-HHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhcccc
Confidence            478999986  49999999999999997 9999999998 54             3455    66999999884  221 


Q ss_pred             -------H---HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhch
Q psy14868         86 -------A---RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVT  129 (209)
Q Consensus        86 -------D---eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~elt  129 (209)
                             +   +..++++++|++|+++||+||+.|++.|+++|+|+|+++++=.
T Consensus       288 g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~  341 (682)
T PTZ00348        288 GAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP  341 (682)
T ss_pred             chhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence                   2   4679999999999999999999999999999999999998654

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=99.59  E-value=9.9e-16  Score=134.30  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             cCccc--eeeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC-CCCCc----------cc-hhhhhc-ccCC
Q psy14868         22 LRKVA--VVQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS-GRPRR----------PD-LRAYIT-SKIT   85 (209)
Q Consensus        22 ~~~~~--~~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-GgpeT----------cd-VF~Ylk-F~eD   85 (209)
                      +++|+  ..++++||+|+ |||+|+|+++|||.|+ ++++++||++ +++ ++++.          ++ +++++. |..+
T Consensus       179 ~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~-~~~i~~Ki~~-a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  256 (292)
T PF00579_consen  179 FPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS-PEEIRKKIKK-AFCDPDRENPRLLKGRPFISPFLIERLEAFHGN  256 (292)
T ss_dssp             SSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT-HHHHHHHHHH-SHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccCchheeeccccccCCccccCccCCccEEEEecc-chhHHHHHHH-HhhCCCcccccccccCCCCCHHHHHHHHHhcCC
Confidence            33444  45799999999 9999999999999997 9999999999 554 33322          55 577777 5544


Q ss_pred             HH--HHHHHHHHcccCccchHHHHHHHHHHHHHHhH
Q psy14868         86 AR--KADIIIQDYTSGALLTGELKKILIDTITPIVT  119 (209)
Q Consensus        86 De--eLEeI~~~crsG~IgcGEcKK~LaE~I~e~La  119 (209)
                      +.  +++++.++|..|.+.++|+|+.+++.++++|+
T Consensus       257 ~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le  292 (292)
T PF00579_consen  257 DDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE  292 (292)
T ss_dssp             HHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence            43  78999999999999999999999999999985

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=99.56  E-value=4.3e-15  Score=130.63  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=70.9

Q ss_pred             eeecccCCCCCCCCCCCCe-EEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccchHH
Q psy14868         29 QVIRILLHSKSNTTDLIIS-LFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLTGE  105 (209)
Q Consensus        29 ~~~~gL~ggKMSsS~p~Sa-I~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~IgcGE  105 (209)
                      .+++||+|+|||+|++++. |++.|+ |++|++||++ |+++     +|++|++ | ..+++++++++++|++|.+ +++
T Consensus       186 ~ll~~l~G~KMSKS~~~~~~i~l~ds-p~~i~~Ki~~-a~~~-----~v~~~l~~~~~~~~~~~eel~~~~~~~~~-~~~  257 (269)
T cd00805         186 PLLTGLDGGKMSKSEGNAIWDPVLDS-PYDVYQKIRN-AFDP-----DVLEFLKLFTFLDYEEIEELEEEHAEGPL-PRD  257 (269)
T ss_pred             ccccCCCCCcccCCCCCcccccCCCC-HHHHHHHHHc-CCcH-----HHHHHHHHHHcCCHHHHHHHHHHHhcCCC-HHH
Confidence            6788999999999999988 899997 9999999999 7766     5577777 3 4467799999999999998 999


Q ss_pred             HHHHHHHHHHH
Q psy14868        106 LKKILIDTITP  116 (209)
Q Consensus       106 cKK~LaE~I~e  116 (209)
                      +|+.|++.|++
T Consensus       258 ~K~~la~~i~~  268 (269)
T cd00805         258 AKKALAEELTK  268 (269)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=99.42  E-value=3e-13  Score=119.66  Aligned_cols=81  Identities=10%  Similarity=-0.011  Sum_probs=69.4

Q ss_pred             eeecccCCCCCCCCCCCCe--EEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccchH
Q psy14868         29 QVIRILLHSKSNTTDLIIS--LFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLTG  104 (209)
Q Consensus        29 ~~~~gL~ggKMSsS~p~Sa--I~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~IgcG  104 (209)
                      .+++||+|.|||+|++++.  |++.|+ |+++++||++ ++     .++|+.|++ | ..+.+++++|+++|.+|. +.|
T Consensus       189 p~l~~l~G~KMSKS~~~~i~l~~~~ds-p~~i~~ki~~-a~-----d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~-~~~  260 (273)
T cd00395         189 PLVTKLDGPKFGKSESGPKWLDTEKTS-PYEFYQFWIN-AV-----DSDVINILKYFTFLSKEEIERLEQEQYEAP-GYR  260 (273)
T ss_pred             ccccCCCCCcCCCCCCCCccccccCCC-HHHHHHHHHc-cc-----HhHHHHHHHHHcCCCHHHHHHHHHHHhcCC-CHH
Confidence            7899999999999999886  458997 9999999999 54     477888888 4 567889999999998876 569


Q ss_pred             HHHHHHHHHHHHH
Q psy14868        105 ELKKILIDTITPI  117 (209)
Q Consensus       105 EcKK~LaE~I~e~  117 (209)
                      +||+.|++.|.++
T Consensus       261 ~~K~~La~~i~~~  273 (273)
T cd00395         261 VAQKTLAEEVTKT  273 (273)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999763

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>KOG2144|consensus

Probab=99.40  E-value=8.2e-13  Score=120.51  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             ecccC-CCCCCCCCCCCeEEccCCChHHHHHHhhcCCC--CCCCCccchhhhhc---c--cC---------CH-------
Q psy14868         31 IRILL-HSKSNTTDLIISLFLGQDDLYAVGTKASDQPL--SGRPRRPDLRAYIT---S--KI---------TA-------   86 (209)
Q Consensus        31 ~~gL~-ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~--pGgpeTcdVF~Ylk---F--~e---------DD-------   86 (209)
                      .+||+ |+|||||+|+|.|+|.|+ |+++++||++ ||  ||+-+.....+|.+   |  .+         ++       
T Consensus       214 vPGL~q~~KMSsSd~~SkIdllD~-~~~V~kKI~k-AfCePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~t  291 (360)
T KOG2144|consen  214 VPGLAQGEKMSSSDPLSKIDLLDE-PADVNKKIKK-AFCEPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKT  291 (360)
T ss_pred             CccccccCccccCCcccccccccC-HHHHHHHHHH-hcCCCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcch
Confidence            46999 999999999999999997 9999999999 88  78877744433333   2  11         11       


Q ss_pred             -HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868         87 -RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus        87 -eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                       +.-|+|+.+|..|++--|++|+-|...||++|.++|+.-+...+
T Consensus       292 f~syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~  336 (360)
T KOG2144|consen  292 FKSYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWPE  336 (360)
T ss_pred             hHHHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence             14788999999999999999999999999999999998877554

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=99.38  E-value=8.5e-13  Score=122.92  Aligned_cols=93  Identities=17%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868         29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT  103 (209)
Q Consensus        29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc  103 (209)
                      -+++|++|.|||+|. +++|+|+|   + |+++++||++.   .++   +|+.|++ | .-++++++++.++|++|. .+
T Consensus       223 plL~~~~G~KMsKS~-~naI~L~d~~ts-p~~i~qki~~~---~D~---~v~~~l~~~t~~~~~ei~~l~~~~~~g~-~~  293 (408)
T PRK05912        223 PLLTGLDGKKMGKSE-GNAVWLDEEKTS-PYEMYQKWMNI---SDA---DVWRYLKLLTFLSLEEIEELEEELAEGP-NP  293 (408)
T ss_pred             CCcCCCCCCcccCCC-CCceeCCCCCCC-HHHHHHHHhcC---ChH---HHHHHHHHHhcCCHHHHHHHHHHHhcCC-Ch
Confidence            356699999999998 89999999   9 99999999983   333   3555555 3 225668999999999999 99


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        104 GELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       104 GEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      +++|+.|++.|.+++...++..+....
T Consensus       294 ~~~Kk~LA~~v~~~lhg~~~~~~a~~~  320 (408)
T PRK05912        294 REAKKVLAEEITALVHGEEAAEAAEEA  320 (408)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            999999999999999998887765543

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=99.33  E-value=2.9e-12  Score=119.67  Aligned_cols=94  Identities=14%  Similarity=0.141  Sum_probs=80.9

Q ss_pred             eeeecccCCCCCCCCCCCCeEEccCCC---hHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868         28 VQVIRILLHSKSNTTDLIISLFLGQDD---LYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL  102 (209)
Q Consensus        28 ~~~~~gL~ggKMSsS~p~SaI~LsDt~---peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig  102 (209)
                      .-+++|++|.|||+|. .++|+|+| +   |+++++||++.     ++ .+|+.|++ | ..++++++++.++|+.|.. 
T Consensus       220 ~PlL~g~dG~KMsKS~-~naI~L~d-~~tsp~~i~qki~~~-----~D-~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~-  290 (410)
T PRK13354        220 MPLLEGADGTKMGKSA-GGAIWLDP-EKTSPYEFYQFWMNI-----DD-RDVVKYLKLFTDLSPDEIDELEAQLETEPN-  290 (410)
T ss_pred             cCCccCCCCCccCCCC-CCceeccC-CCCCHHHHHHHHHcC-----Ch-HHHHHHHHHHhCCCHHHHHHHHHHHhcCCC-
Confidence            3466799999999996 57999999 7   99999999983     33 67799999 5 3467899999999999876 


Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        103 TGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       103 cGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      ++++|+.|++.|++++..+++.++....
T Consensus       291 ~~~~Kk~LA~~v~~~vhg~~~~~~a~~~  318 (410)
T PRK13354        291 PRDAKKVLAEEITKFVHGEEAAEEAEKI  318 (410)
T ss_pred             hHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            9999999999999999999998877664

>KOG2713|consensus

Probab=99.07  E-value=1.2e-10  Score=106.22  Aligned_cols=105  Identities=11%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             CCCCCCCCC--CeEEccCCChHHHHHHhhcCCC----------C-CCCCccchhhhhcccCCHHHHHHHHHHcccCccch
Q psy14868         37 SKSNTTDLI--ISLFLGQDDLYAVGTKASDQPL----------S-GRPRRPDLRAYITSKITARKADIIIQDYTSGALLT  103 (209)
Q Consensus        37 gKMSsS~p~--SaI~LsDt~peeIrkKI~k~A~----------p-GgpeTcdVF~YlkF~eDDeeLEeI~~~crsG~Igc  103 (209)
                      .|||.|+|+  +.|+|+|+ |++|.+||+++ .          | ++|++.|+..+|.-... ...++|.+  ++..+.+
T Consensus       210 kKMSKSd~n~~s~I~l~DS-~~~I~~Ki~ka-~TD~~~~vtYd~~~RpgvsNLlni~aaVt~-~s~eeV~~--~~a~~~~  284 (347)
T KOG2713|consen  210 KKMSKSDPNPKSRINLTDS-PDLIVKKIKKA-QTDNTSGVTYDPANRPGVSNLLNIYAAVTG-KSIEEVVE--ESANMST  284 (347)
T ss_pred             hhcccCCCCCcceEEecCC-HHHHHHHHHHH-hcccccceeeCCccccchhHHHHHHHHHcC-CCHHHHHH--HhccCCH
Confidence            499999987  89999997 99999999994 4          2 55666777777774222 35677776  5667889


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868        104 GELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus       104 GEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      ++.|..++|.|.+.|+|+|++.+++..+.  +++.+..|.++|+-
T Consensus       285 ~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre  329 (347)
T KOG2713|consen  285 ADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKARE  329 (347)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999998744  99999999887653

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=98.73  E-value=4.6e-08  Score=97.16  Aligned_cols=110  Identities=12%  Similarity=0.134  Sum_probs=83.8

Q ss_pred             hhHHHhhhcCccc-----eeeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCC--CCCCCccchhhhhcc-c
Q psy14868         14 VNAFITTILRKVA-----VVQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPL--SGRPRRPDLRAYITS-K   83 (209)
Q Consensus        14 ~~~~~~~~~~~~~-----~~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~--pGgpeTcdVF~YlkF-~   83 (209)
                      +|.+-|..+|+.+     .-.-.+||.+  .+|+.++|+|+||+.|+ +++|++||++ ||  |+ -+.++|.+|.+| .
T Consensus       525 i~mlAre~~~~~~~~~~~~~~~~p~l~~~~~~~~~~s~~s~i~~~D~-~~~i~~Ki~k-A~Cpp~-~~~Npvl~~~~y~~  601 (682)
T PTZ00348        525 INEFAREYTKGRIECIQALEGRVPALHRPGAAPAVLGADDVLYLDDN-DMDIRRKIKK-AYSAPN-EEANPVISVAQHLL  601 (682)
T ss_pred             HHHHHHHhccccccchhhcCCCCccccccccccCCCCCCCeeeecCC-HHHHHHHHHh-CCCCCC-CCCCcHHHHHHHHh
Confidence            4677788888422     2222447762  26777789999999997 9999999999 77  54 355777666653 1


Q ss_pred             C---------CH--------HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHh
Q psy14868         84 I---------TA--------RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK  126 (209)
Q Consensus        84 e---------DD--------eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~  126 (209)
                      +         .+        +..++++++|.+|.+--+++|.-+++.|+++|+|.|+.-+
T Consensus       602 ~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~  661 (682)
T PTZ00348        602 AQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS  661 (682)
T ss_pred             cCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1         11        1478999999999999999999999999999999998875

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=96.91  E-value=0.0018  Score=60.32  Aligned_cols=72  Identities=13%  Similarity=0.017  Sum_probs=50.2

Q ss_pred             eeecccCCCCCCCC--------CC--CCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhcccCCHHHHHHHHHHccc
Q psy14868         29 QVIRILLHSKSNTT--------DL--IISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTS   98 (209)
Q Consensus        29 ~~~~gL~ggKMSsS--------~p--~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~YlkF~eDDeeLEeI~~~crs   98 (209)
                      -++++++|.|||.|        .|  +++||+.|+ |+++.+||++ ++|             + .+.+++++|.+   .
T Consensus       212 pLl~~~dg~KmgKS~~~~i~l~~~~~~~~i~~~d~-~D~~~~Ki~k-~~t-------------~-~~~~ei~~l~~---~  272 (377)
T TIGR00234       212 PLLTPADGEKMGKSGGGAVSLDEGKYDFYQFWINT-PDEDVKKILK-LFT-------------F-LGLEEIEALVE---L  272 (377)
T ss_pred             eeecCCCCCCccCCCCCcccCCccHhhhhhhhcCC-cHHHHHHHHH-HcC-------------C-CcHHHHHHHHH---h
Confidence            35667777888887        34  599999997 9999999998 431             2 23457777754   2


Q ss_pred             CccchHHHHHHHHHHHHHHhH
Q psy14868         99 GALLTGELKKILIDTITPIVT  119 (209)
Q Consensus        99 G~IgcGEcKK~LaE~I~e~La  119 (209)
                      ..-.-.+.|+.|+..+.+++-
T Consensus       273 ~~~~~~~~q~~la~ei~~~vh  293 (377)
T TIGR00234       273 KGPSPREVKENLAKEITKYVH  293 (377)
T ss_pred             cccCHHHHHHHHHHHHHHHhc
Confidence            223446789888877766654

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=95.69  E-value=0.013  Score=55.61  Aligned_cols=78  Identities=14%  Similarity=0.049  Sum_probs=56.9

Q ss_pred             eeecccCCC---------CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhcccCCHHHHHHHHHHcccC
Q psy14868         29 QVIRILLHS---------KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYITSKITARKADIIIQDYTSG   99 (209)
Q Consensus        29 ~~~~gL~gg---------KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~YlkF~eDDeeLEeI~~~crsG   99 (209)
                      -+++||+|.         +||.|+++|.|.+.+. +..|.+|+++ +         .+.++.|. .-+++++|.+....+
T Consensus       215 PLL~~ldG~KmgKs~~~a~~~~s~~~Sp~~~yq~-~~~i~D~~~~-~---------~~~~~t~l-~~~eI~~i~~~~~~~  282 (401)
T COG0162         215 PLLTGLDGKKMGKSEGGAVWLDSEKTSPYDFYQY-WMNIEDADVK-R---------FLKLLTFL-SLEEIEEIEKYVLKG  282 (401)
T ss_pred             ccccCCCCCcccccCCCceEccCCCCCcHhhhhc-HhcCcHHHHH-H---------HHHHhCcC-ChHHHHHHHHHhhcC
Confidence            356699996         7778888889999996 8999888886 3         23333344 335888898877777


Q ss_pred             ccchHHHHHHHHHHHHHHhH
Q psy14868        100 ALLTGELKKILIDTITPIVT  119 (209)
Q Consensus       100 ~IgcGEcKK~LaE~I~e~La  119 (209)
                      . .--++|+.||..+...+-
T Consensus       283 ~-~~r~~k~~LA~e~~~~~h  301 (401)
T COG0162         283 P-EPREAKKLLAKEVTKLVH  301 (401)
T ss_pred             C-ChHHHHHHHHHHhhHhhc
Confidence            6 555899999998766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
2quh_A	477	Crystal Structures Of Human Tryptophanyl-Trna Synth		2e-07
2quj_B	384	Crystal Structures Of Human Tryptophanyl-Trna Synth		2e-07
1o5t_A	378	Crystal Structure Of The Aminoacylation Catalytic F		2e-07
1ulh_A	390	A Short Peptide Insertion Crucial For Angiostatic A		2e-07
2ake_A	384	Structure Of Human Tryptophanyl-Trna Synthetase In		2e-07
2azx_A	477	Charged And Uncharged Trnas Adopt Distinct Conforma		5e-07
1r6t_A	477	Crystal Structure Of Human Tryptophanyl-Trna Synthe		5e-07
1r6u_A	437	Crystal Structure Of An Active Fragment Of Human Tr		5e-07
3i05_A	395	Tryptophanyl-Trna Synthetase From Trypanosoma Bruce		3e-05

>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase In Complex With Trp Length = 477

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 412 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 455

>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment Of Human Tryptophanyl-Trna Synthetase Length = 378

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 319 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 362

>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity Of Human Tryptophanyl-Trna Synthetase Length = 390

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 331 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 374

>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex With Trna(Trp) Length = 384

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 319 KLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 362

>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations When Complexed With Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 412 KLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDE 455

>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase Length = 477

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 412 KLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDE 455

>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human Tryptophanyl-Trna Synthetase With Cytokine Activity Length = 437

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 88  KADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           K + I +DYTSGA LTGELKK LI+ + P++  HQ   K VT+E
Sbjct: 365 KLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKEVTDE 408

>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei Length = 395

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSS 139
           + ++Y  G ++TGE+KK+LI+TIT I   HQE  K VT+E  +L +S+
Sbjct: 336 VKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTST 383

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	2e-07
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	2e-07
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	2e-07
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	5e-07
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	5e-07
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	6e-07
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	7e-07
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	1e-06
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	8e-06

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           +  DY +G LLTGE+K  LI  +  ++  H E    V   
Sbjct: 400 LKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT 439

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
               Y  G + + E+K+  +  I   V+ +QE+ K VT++
Sbjct: 356 YRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDD 395

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           + + Y+ G LL+GELKKI+  ++   +  +    K +T  
Sbjct: 336 VEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTA 375

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 12/40 (30%), Positives = 26/40 (65%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
           I + Y+SG +L+GE+K IL+  +  +  +HQ+  + + ++
Sbjct: 333 IGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDD 372

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE 131
               Y SG LL+GE+KK+ I+T+   V   QE    V EE
Sbjct: 362 CYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEE 401

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 24/43 (55%), Positives = 31/43 (72%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGK 134
           I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E  K
Sbjct: 416 IRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVK 458

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKL 135
           I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E  K 
Sbjct: 369 IRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKE 412

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 21/44 (47%), Positives = 31/44 (70%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKL 135
           + ++Y  G ++TGE+KK+LI+TIT I   HQE  K VT+E  +L
Sbjct: 336 VKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQL 379

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 92  IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE 130
                 +G L  GE K+ LI  I   +  HQ   K   +
Sbjct: 321 RYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAEK 359

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	99.95
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	99.95
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	99.95
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	99.94
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	99.94
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	99.94
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	99.94
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	99.92
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	99.92
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	99.91
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	99.91
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	99.91
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	99.89
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	99.89
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	99.88
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	99.87
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	99.87
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	99.87
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	99.86
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	99.82
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	99.81
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	99.81
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.79
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	99.79
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	99.78
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	99.78
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	99.78
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	99.75
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	99.65
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	99.58
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.57
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	99.5
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	99.5
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	99.43
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	99.4
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.4

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=99.95  E-value=5.1e-29  Score=228.48  Aligned_cols=124  Identities=19%  Similarity=0.170  Sum_probs=110.7

Q ss_pred             HHhhhcCccce--eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC-------------CCccchhhhh
Q psy14868         17 FITTILRKVAV--VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR-------------PRRPDLRAYI   80 (209)
Q Consensus        17 ~~~~~~~~~~~--~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg-------------peTcdVF~Yl   80 (209)
                      -.+-|.++|++  ..+++||+|. |||+|+|+|+|+|+|+ |++|++|||++|+||+             |+.|.||+|+
T Consensus       245 a~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D~-p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~  323 (386)
T 3hzr_A          245 ATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSDN-AKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLL  323 (386)
T ss_dssp             HHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTTCC-HHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHH
T ss_pred             HHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecCCC-HHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHH
Confidence            34556788876  4677899995 9999999999999997 9999999999887665             4547779999


Q ss_pred             c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCC
Q psy14868         81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSG  141 (209)
Q Consensus        81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~  141 (209)
                      + |..+++++++|+++|++|+++||+||+.|++.|+++|+||||||++++++.|++||.+++
T Consensus       324 ~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~  385 (386)
T 3hzr_A          324 NIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTK  385 (386)
T ss_dssp             HHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred             HHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            9 466788999999999999999999999999999999999999999999999999999876

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=99.95  E-value=5.2e-29  Score=229.82  Aligned_cols=125  Identities=18%  Similarity=0.122  Sum_probs=111.6

Q ss_pred             HHhhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhh
Q psy14868         17 FITTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAY   79 (209)
Q Consensus        17 ~~~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Y   79 (209)
                      -.+-|.|+|++  ..+++||+|  +|||+|+|+|+|+|+|+ |++|++|||+||+|             |+|+.|++|+|
T Consensus       264 a~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~-p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~  342 (406)
T 3tze_A          264 AKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDA-QDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEY  342 (406)
T ss_dssp             HHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCC-HHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHH
T ss_pred             HHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCC-HHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHH
Confidence            34557788876  467889999  79999999999999997 99999999996554             45676888999


Q ss_pred             hc-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868         80 IT-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR  142 (209)
Q Consensus        80 lk-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l  142 (209)
                      ++ |.+|++++++|+++|++|+++|||||+.|++.|+++|+||||||++++++.|++||.++++
T Consensus       343 ~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  406 (406)
T 3tze_A          343 LKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF  406 (406)
T ss_dssp             HHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred             HHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence            99 5668889999999999999999999999999999999999999999999999999999864

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=99.95  E-value=1.4e-28  Score=225.96  Aligned_cols=124  Identities=17%  Similarity=0.198  Sum_probs=100.9

Q ss_pred             HhhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCC-------------CCCCCccchhhhh
Q psy14868         18 ITTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPL-------------SGRPRRPDLRAYI   80 (209)
Q Consensus        18 ~~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------------pGgpeTcdVF~Yl   80 (209)
                      .+-+.|+|++  ..+++||+|  +|||+|.|+|+|+|+|+ |++|++|||++|+             +|+|+.|++|+|+
T Consensus       242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~-p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~  320 (393)
T 3hv0_A          242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDN-EESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYL  320 (393)
T ss_dssp             GGGTCCCCEEEEECCCCC-------------CCCCBTTCC-HHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHH
T ss_pred             HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCC-HHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHH
Confidence            3456777776  467889999  79999999999999997 9999999999655             4567777789999


Q ss_pred             c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868         81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR  142 (209)
Q Consensus        81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l  142 (209)
                      + |.++++++++|+++|++|+++|||||+.|++.|+++|+||||||++++++.|++||.++++
T Consensus       321 ~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~  383 (393)
T 3hv0_A          321 RFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSRE  383 (393)
T ss_dssp             HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCC
T ss_pred             HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHH
Confidence            9 4678889999999999999999999999999999999999999999999999999999986

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=99.94  E-value=7.8e-28  Score=224.87  Aligned_cols=123  Identities=19%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             hhhcCccce--eeeecccCCC--CCCCCCCCCeEEccCCChHHHHHHhhcCCC-------------CCCCCccchhhhhc
Q psy14868         19 TTILRKVAV--VQVIRILLHS--KSNTTDLIISLFLGQDDLYAVGTKASDQPL-------------SGRPRRPDLRAYIT   81 (209)
Q Consensus        19 ~~~~~~~~~--~~~~~gL~gg--KMSsS~p~SaI~LsDt~peeIrkKI~k~A~-------------pGgpeTcdVF~Ylk   81 (209)
                      +-|.|+|++  ..+++||+|.  |||+|.|+|+|+|+|+ |++|++|||++|+             +|+|++|++|+|+.
T Consensus       310 rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~-p~~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~  388 (451)
T 3foc_A          310 RMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDT-PAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLE  388 (451)
T ss_dssp             TTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHH
T ss_pred             HhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCC-HHHHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHH
Confidence            345677765  4577899997  9999999999999997 9999999999545             35677788899999


Q ss_pred             -ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868         82 -SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR  142 (209)
Q Consensus        82 -F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l  142 (209)
                       |..+++++++|+++|++|+++||+||+.|++.|+++|+|+||||++++++.|++||.++++
T Consensus       389 ~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~d~v~~f~~~~~~  450 (451)
T 3foc_A          389 VFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL  450 (451)
T ss_dssp             HHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCTTC
T ss_pred             HHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccC
Confidence             5668889999999999999999999999999999999999999999999999999999876

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=99.94  E-value=6.1e-28  Score=221.77  Aligned_cols=124  Identities=25%  Similarity=0.232  Sum_probs=87.6

Q ss_pred             HhhhcCcccee--eeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhh
Q psy14868         18 ITTILRKVAVV--QVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYI   80 (209)
Q Consensus        18 ~~~~~~~~~~~--~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Yl   80 (209)
                      .+-+.|+|++.  .|++||+|  +|||+| |+|+|+|+|+ |++|++|||++|+|             |+|++|++|+|+
T Consensus       246 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~-p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~  323 (395)
T 3i05_A          246 PRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDT-EKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWL  323 (395)
T ss_dssp             HHHTCCCCEEEEECCCCCC--------------CCBTTCC-HHHHHHHHC----------------------CCHHHHHH
T ss_pred             HHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCC-HHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHH
Confidence            35567788764  57889999  799999 9999999997 99999999996554             456668889999


Q ss_pred             c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868         81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP  143 (209)
Q Consensus        81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~  143 (209)
                      . |.++++++++|+++|++|+++||+||+.|++.|+++|+||||||++++++.|++||.++++.
T Consensus       324 ~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~  387 (395)
T 3i05_A          324 SFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMG  387 (395)
T ss_dssp             HHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCT
T ss_pred             HHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhccc
Confidence            9 46678899999999999999999999999999999999999999999999999999999874

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=99.94  E-value=2.1e-27  Score=216.08  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=100.9

Q ss_pred             cCccce--eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc--ccC
Q psy14868         22 LRKVAV--VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT--SKI   84 (209)
Q Consensus        22 ~~~~~~--~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk--F~e   84 (209)
                      +++|+.  .+|++||+|.|||+|+|+|+|+|+|+ |++|++|||+ |+|             |+|+.|+||+|+.  +.+
T Consensus       238 ~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D~-p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~  315 (372)
T 3a04_A          238 LERPASTYHKLQPGLDGRKMSSSRPDSTIFLTDP-PEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMP  315 (372)
T ss_dssp             CCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTCC-HHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCC
T ss_pred             ccChhhhhhcccCCCCCCccCCCCCCcccccCCC-HHHHHHHHhc-CccCCCCCcccccccCCCCchhhHHHHHHHccCC
Confidence            556654  47889999999999999999999997 9999999999 675             5577788998754  478


Q ss_pred             CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcC
Q psy14868         85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSS  139 (209)
Q Consensus        85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~  139 (209)
                      |++++++|+++|++|+++|||||+.|++.|+++|+||||||+++.+ .+++++..
T Consensus       316 d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~  369 (372)
T 3a04_A          316 DDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP  369 (372)
T ss_dssp             SHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence            9999999999999999999999999999999999999999999886 46666553

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=99.94  E-value=2e-27  Score=218.28  Aligned_cols=129  Identities=18%  Similarity=0.179  Sum_probs=108.5

Q ss_pred             hhcCccc--eeeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc-
Q psy14868         20 TILRKVA--VVQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT-   81 (209)
Q Consensus        20 ~~~~~~~--~~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk-   81 (209)
                      -|.++|+  ...+++||+|  +|||+|+|+|+|+|+|+ |++|++|||+||+|             |+|+.|.+|+|+. 
T Consensus       231 ~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~-p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~  309 (392)
T 3jxe_A          231 LGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDS-PEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEI  309 (392)
T ss_dssp             GTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCC-HHHHHHHHHTCC--------------------CHHHHHHHH
T ss_pred             cCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCC-HHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHH
Confidence            3445554  3578899999  59999999999999997 99999999996664             4567677899999 


Q ss_pred             cc-CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc-ccccCce
Q psy14868         82 SK-ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP-DRYTDQI  150 (209)
Q Consensus        82 F~-eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~-a~~~~~~  150 (209)
                      |. .+++++++|+++|++|+++||+||+.|++.|+++|+|+||||++++ +.|++||..|++. ++|++.|
T Consensus       310 ~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~~~~~~~~~~  379 (392)
T 3jxe_A          310 FFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKLAQEMWNEAI  379 (392)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHHHHHHHTTSC
T ss_pred             HHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcccHHHHhccC
Confidence            53 6888999999999999999999999999999999999999999999 7899999999984 7787755

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=99.92  E-value=7.8e-26  Score=210.34  Aligned_cols=125  Identities=31%  Similarity=0.329  Sum_probs=112.5

Q ss_pred             hhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc
Q psy14868         19 TTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT   81 (209)
Q Consensus        19 ~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk   81 (209)
                      +-+.++|++  ..+++||+|  +|||+|.|+|+|+|+|+ |++|++||+++|+|             |+|+.|+||.|++
T Consensus       279 r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~-p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~  357 (437)
T 1r6u_A          279 RIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT-AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT  357 (437)
T ss_dssp             GGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCC-HHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHH
T ss_pred             HhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCC-HHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHH
Confidence            345677764  467889999  89999999999999997 99999999998876             5577788899999


Q ss_pred             -ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccc
Q psy14868         82 -SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPD  144 (209)
Q Consensus        82 -F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a  144 (209)
                       |..+++++++|+++|++|+++||+||+.|++.|+++|.++||||++++++.|++||.++++..
T Consensus       358 ~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~  421 (437)
T 1r6u_A          358 FFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSF  421 (437)
T ss_dssp             HHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSC
T ss_pred             HHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence             566888999999999999999999999999999999999999999999988999999998853

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=99.92  E-value=9.5e-26  Score=211.30  Aligned_cols=124  Identities=31%  Similarity=0.343  Sum_probs=111.3

Q ss_pred             hhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhhc
Q psy14868         19 TTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYIT   81 (209)
Q Consensus        19 ~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Ylk   81 (209)
                      +-+.++|+.  ..+++||+|  +|||+|.++|+|+|+|+ |++|++||+++|++             |+|+.|+||.|++
T Consensus       326 r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~-p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~  404 (477)
T 1r6t_A          326 RIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT-AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT  404 (477)
T ss_dssp             GGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHH
T ss_pred             HhCCCCceeeecccccCCCCCccccCCCCCCCceeecCC-HHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHH
Confidence            345666664  378889999  89999999999999997 99999999998776             4566688899999


Q ss_pred             -ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868         82 -SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP  143 (209)
Q Consensus        82 -F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~  143 (209)
                       |..+++++++|+++|++|+++||+||+.|++.|+++|.||||||++++++.|++||..+++.
T Consensus       405 ~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~  467 (477)
T 1r6t_A          405 FFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA  467 (477)
T ss_dssp             HHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred             HHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence             56688899999999999999999999999999999999999999999998899999998875

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=99.91  E-value=1.5e-25  Score=200.33  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=108.7

Q ss_pred             cCccce---eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--------CCCCccchhhhhcccCCHHHHH
Q psy14868         22 LRKVAV---VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--------GRPRRPDLRAYITSKITARKAD   90 (209)
Q Consensus        22 ~~~~~~---~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--------GgpeTcdVF~YlkF~eDDeeLE   90 (209)
                      .|++.+   ..+++||+|+|||+|+|+ +|+|+|+ |++|++||++ |+|        |+|+.|+||+|+++..++++++
T Consensus       173 ~P~~~~~~~~~~l~~l~G~KMSKS~~n-~I~L~d~-p~~i~~KI~~-a~td~~~~~~~~~~~~~~v~~~~~~~~~~~~i~  249 (322)
T 3tzl_A          173 LPEARVNEEVAVVVGTDGAKMSKSYQN-TIDIFSS-EKTLKKQISS-IVTDSTALEDPKDHENCNIFKIAKLFLDESGQK  249 (322)
T ss_dssp             CCEEECCCSSCCCBCTTSSBCCGGGTC-CCBSSCC-HHHHHHHHHT-CCCCCCCTTSCCCGGGCHHHHHHGGGCCHHHHH
T ss_pred             CchhhhccccccccCCCCCcCCCCCCC-ceecCCC-HHHHHHHHHh-ccCCCccccCCCCCcchhHHHHHHHhCChhHHH
Confidence            355555   578999999999999986 8999997 9999999999 764        6788899999999655778999


Q ss_pred             HHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         91 IIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        91 eI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      +++++|++|+++||+||+.|++.|+++|+|+||||++++++.  |++.+..|.++|+-
T Consensus       250 ~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~G~~~a~~  307 (322)
T 3tzl_A          250 ELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDFGATKARK  307 (322)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999754  99999999887653

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=99.91  E-value=2e-25  Score=200.82  Aligned_cols=122  Identities=11%  Similarity=0.079  Sum_probs=108.2

Q ss_pred             cCccce----eeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhc-ccCCH
Q psy14868         22 LRKVAV----VQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYIT-SKITA   86 (209)
Q Consensus        22 ~~~~~~----~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~Ylk-F~eDD   86 (209)
                      +++|.+    ..+++||+|.|||+|+++ +|+|+|+ |+++++||++ |++          |+|++|+||+|++ |.+++
T Consensus       185 f~~P~~~~~~~~~l~gldG~KMSKS~~n-~I~L~ds-p~~i~~Ki~~-a~td~~~~~~~~~~~p~~~~v~~~~~~f~~~~  261 (340)
T 2g36_A          185 FPEPEAILSRVPKLPGTDGRKMSKSYGN-IINLEIS-EKELEQTILR-MMTDPARVRRSDPGNPENCPVWKYHQAFDISE  261 (340)
T ss_dssp             CCCCEEEECCSCCCCCTTSSCCCGGGTC-CCBTTCC-HHHHHHHHHT-CCCCTTCSSTTSCCCGGGCHHHHHHHHTTCCH
T ss_pred             cCCchhhhccccccCCCCccccCCCCCC-eEeeeCC-HHHHHHHHHh-CCCCcccccccCCCCCchhHHHHHHHHHCCCH
Confidence            455653    489999999999999985 7999997 9999999999 564          6788899999999 55567


Q ss_pred             HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         87 RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        87 eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      +++++|+++|++|+++|++||+.|++.|+++|+|+||||++++++.  |++++..|.++|+.
T Consensus       262 ~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~~il~~g~~~a~~  323 (340)
T 2g36_A          262 EESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHYVDDVIMEGTKKARE  323 (340)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999864  99999999887654

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=99.91  E-value=6.6e-25  Score=203.49  Aligned_cols=125  Identities=23%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             HhhhcCccce--eeeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhh
Q psy14868         18 ITTILRKVAV--VQVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYI   80 (209)
Q Consensus        18 ~~~~~~~~~~--~~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Yl   80 (209)
                      .+-|+++|++  ..+++||+|  +|||+|.++++|+|+|+ |++|++||+++|++             |+|+.|+||.|+
T Consensus       271 ~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~-p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l  349 (432)
T 2ip1_A          271 DKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDT-PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYL  349 (432)
T ss_dssp             HHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHH
T ss_pred             HHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCC-HHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHH
Confidence            3445677765  458889999  89999999999999997 99999999997776             456778889999


Q ss_pred             c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCcc
Q psy14868         81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRP  143 (209)
Q Consensus        81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~  143 (209)
                      + |..+++++++|+++|++|+++||+||+.|++.|+++|.++||||+++++++|++||..++..
T Consensus       350 ~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~  413 (432)
T 2ip1_A          350 SFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLV  413 (432)
T ss_dssp             HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCC
T ss_pred             HHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHH
Confidence            9 56688899999999999999999999999999999999999999999998899999988763

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=99.89  E-value=6.8e-24  Score=191.55  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=108.2

Q ss_pred             cCccce----eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhc-ccCC
Q psy14868         22 LRKVAV----VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYIT-SKIT   85 (209)
Q Consensus        22 ~~~~~~----~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~Ylk-F~eD   85 (209)
                      +++|+.    ..+++||+|+ |||+|+++ +|+|+|+ |+++++||++ |++          |+++.|++|.|++ |..+
T Consensus       194 f~~P~~~~~~~~~l~~ldG~~KMSKS~~n-~I~L~d~-p~~i~~Ki~~-a~td~~~~~~~~~~~~~~~~~~~~l~~~~~~  270 (351)
T 1yi8_B          194 LAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDS-ADEVARKVMG-MYTDPGHLRASDPGRVEGNPVFTFLDAFDPD  270 (351)
T ss_dssp             SCCCEEEECSSCSCCCTTSSSCCCTTTTC-CCBTTCC-HHHHHHHHHT-CCCCTTCCSTTSCCCCTTCTTHHHHHHHCSC
T ss_pred             cCCCeeeeecCccccCCCCccccCCCCCC-eecCCCC-HHHHHHHHHh-cCCCcccccccCCCCCccchHHHHHHHHcCC
Confidence            455543    4689999998 99999998 8999997 9999999999 665          5688899999999 5667


Q ss_pred             HHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         86 ARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        86 DeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      ++++++|+++|++|+++||+||+.|++.|+++|+|+||||++++++.  |++++..|.++|+-
T Consensus       271 ~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~~il~~G~~~a~~  333 (351)
T 1yi8_B          271 PARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGRE  333 (351)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999854  99999999887654

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=99.89  E-value=4.2e-24  Score=191.79  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=100.3

Q ss_pred             eeecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC----------CCCCccchhhhhcccCCHHHHHHHHHHcc
Q psy14868         29 QVIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS----------GRPRRPDLRAYITSKITARKADIIIQDYT   97 (209)
Q Consensus        29 ~~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p----------GgpeTcdVF~YlkF~eDDeeLEeI~~~cr   97 (209)
                      .+++||+| +|||+|.++ +|+|+|+ |+++++||++ +++          |+|++|+||+|++++.+++++++|+++|+
T Consensus       185 p~l~gldG~~KMSKS~~n-~I~L~d~-p~~i~~Ki~~-a~td~~~~~~~~~~~p~~~~v~~~~~~~t~~~~i~~l~~~~~  261 (337)
T 2el7_A          185 PRVPGIDGKAKMSKSLGN-TIGLLEP-EESIWQKIQH-LPDDPQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYR  261 (337)
T ss_dssp             CCCBCTTSSSBCCTTTTC-CCBSSSC-HHHHHHHHHT-CCCCC-------------CHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ccccCCCCccccCCCCCC-eeeCcCC-HHHHHHHHHh-CCCCCccccccCCCCCchhhHHHHHHHcCChHHHHHHHHHHH
Confidence            58999999 999999998 8999997 9999999999 554          66888999999996456679999999999


Q ss_pred             cCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH--HhhhhhcCCCccccc
Q psy14868         98 SGALLTGELKKILIDTITPIVTHHQEAMKGVTEE--HGKLTSSSSGRPDRY  146 (209)
Q Consensus        98 sG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd--~V~eFm~~g~l~a~~  146 (209)
                      +|+++||+||+.|++.|+++|.|+||||++++++  .|++++..|.++|+-
T Consensus       262 ~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~il~~G~~~a~~  312 (337)
T 2el7_A          262 KAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDALLEGAKRARA  312 (337)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999986  499999999876553

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=99.88  E-value=2.3e-24  Score=194.64  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=98.6

Q ss_pred             eeecccC-C-CCCCCCCC--CCeEEccCCChHHHHHHhhcCCCCC-------------CCCccchhhhhcccCCHHHHHH
Q psy14868         29 QVIRILL-H-SKSNTTDL--IISLFLGQDDLYAVGTKASDQPLSG-------------RPRRPDLRAYITSKITARKADI   91 (209)
Q Consensus        29 ~~~~gL~-g-gKMSsS~p--~SaI~LsDt~peeIrkKI~k~A~pG-------------gpeTcdVF~YlkF~eDDeeLEe   91 (209)
                      .+++||+ | +|||+|+|  +|+|+|+|+ |++|++|||+ |+|+             +|++|++|+|+.+. +++++++
T Consensus       190 ~~l~gL~dg~~KMSKS~~~~~~~I~L~D~-p~~i~kKI~~-a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~-~~~~~e~  266 (341)
T 3sz3_A          190 ARVMSLQDATKKMSKSDDNRKNVITLLED-PKSIIKKINK-AQTDAETPPRIAYDVENKAGIANLMGLYSAA-TGKTFAE  266 (341)
T ss_dssp             CCCEETTEEEEECCTTCSCGGGCCBTTCC-HHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH-HCCCHHH
T ss_pred             ccccCCCCCCCccCCCCCCCCCeeecCCC-HHHHHHHhhh-ccCCCCCCcccccCCCCCcchhHHHHHHHHc-CCccHHH
Confidence            5788996 5 59999999  799999997 9999999999 6643             34457789999954 3358999


Q ss_pred             HHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         92 IIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        92 I~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      |+++|+ |+++||+||+.|++.|+++|+|+||||+++.++.  |++.+..|.++|+-
T Consensus       267 i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~G~~kA~~  322 (341)
T 3sz3_A          267 IEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASA  322 (341)
T ss_dssp             HHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            999999 7799999999999999999999999999998754  99999999887654

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=99.87  E-value=2.1e-23  Score=188.12  Aligned_cols=120  Identities=11%  Similarity=0.103  Sum_probs=102.8

Q ss_pred             cCccce---eeeecccCC--CCCCCCCCCC--eEEccCCChHHHHHHhhcCCCCC-----------CCCccchhhhhccc
Q psy14868         22 LRKVAV---VQVIRILLH--SKSNTTDLII--SLFLGQDDLYAVGTKASDQPLSG-----------RPRRPDLRAYITSK   83 (209)
Q Consensus        22 ~~~~~~---~~~~~gL~g--gKMSsS~p~S--aI~LsDt~peeIrkKI~k~A~pG-----------gpeTcdVF~YlkF~   83 (209)
                      +|++.+   ..+++||+|  +|||+|+|++  +|+|+|+ |++|++|||+ |+|+           +|+.|++|+|+.+.
T Consensus       181 ~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~-~~~i~~KI~~-a~td~~~~~~~~~~~~p~v~~~~~~~~~~  258 (348)
T 2yy5_A          181 LPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDP-KEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNMLTILKAL  258 (348)
T ss_dssp             CCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCC-HHHHHHHHHT-CCCCSSCCCSCCTTTCHHHHHHHHHHHHH
T ss_pred             CCeeecccccccccCCCCcchhcCCCCCCCCceEeecCC-HHHHHHHHHh-CCCCCccccccCCCCCCchhhHHHHHHhC
Confidence            466665   578999999  8999999996  9999997 9999999999 6643           36667889999965


Q ss_pred             CCHHHHH---------HHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCccccc
Q psy14868         84 ITARKAD---------IIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGRPDRY  146 (209)
Q Consensus        84 eDDeeLE---------eI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l~a~~  146 (209)
                      + +++++         +|+++|+ | ++||+||+.|++.|+++|+|+||||+++.+..|+++|..|.++|+-
T Consensus       259 ~-~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~d~~~~~~l~~G~~~a~~  327 (348)
T 2yy5_A          259 L-KEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLVNIQRKREQISREQVFNCLQAGKNQAQA  327 (348)
T ss_dssp             T-TSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             C-hHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            3 45788         9999999 6 9999999999999999999999999999554499999999876543

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=99.87  E-value=3.3e-23  Score=185.43  Aligned_cols=120  Identities=14%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             cCccce---eeeecccCC--CCCCCCCCCCe--EEccCCChHHHHHHhhcCCCCC-----------CCCccchhhhhccc
Q psy14868         22 LRKVAV---VQVIRILLH--SKSNTTDLIIS--LFLGQDDLYAVGTKASDQPLSG-----------RPRRPDLRAYITSK   83 (209)
Q Consensus        22 ~~~~~~---~~~~~gL~g--gKMSsS~p~Sa--I~LsDt~peeIrkKI~k~A~pG-----------gpeTcdVF~YlkF~   83 (209)
                      +|++.+   ..+++||+|  +|||+|+++++  |+|+|+ |++|++|||+ |+|+           +|++|++|+|+.+.
T Consensus       171 ~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~-~~~i~~KI~~-a~td~~~~~~~~~~~~p~v~~~~~~~~~~  248 (328)
T 1i6k_A          171 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDD-AKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNLLNIYSTL  248 (328)
T ss_dssp             CCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCC-HHHHHHHHHH-CCCCSSCCCCCBTTTBHHHHHHHHHHHHH
T ss_pred             CCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCC-HHHHHHHHHh-cCCCCccccccCCCCCcchhhHHHHHHHC
Confidence            455544   488999999  89999999977  999997 9999999999 6653           36667889999965


Q ss_pred             CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH-hhhhhcCCCccccc
Q psy14868         84 ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH-GKLTSSSSGRPDRY  146 (209)
Q Consensus        84 eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~-V~eFm~~g~l~a~~  146 (209)
                       +++++++|+++|+ | ++||+||+.|++.|+++|+|+||||+++.++. |++++..|.++|+-
T Consensus       249 -~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~~~il~~g~~~a~~  309 (328)
T 1i6k_A          249 -SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANR  309 (328)
T ss_dssp             -HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence             3458899999999 6 99999999999999999999999999998754 99999998876553

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=99.87  E-value=3.9e-23  Score=189.88  Aligned_cols=120  Identities=14%  Similarity=0.122  Sum_probs=100.0

Q ss_pred             cCccce---eeeecccCC--CCCCCCCC--CCeEEccCCChHHHHHHhhcCCCC-----------CCCCccchhhhhccc
Q psy14868         22 LRKVAV---VQVIRILLH--SKSNTTDL--IISLFLGQDDLYAVGTKASDQPLS-----------GRPRRPDLRAYITSK   83 (209)
Q Consensus        22 ~~~~~~---~~~~~gL~g--gKMSsS~p--~SaI~LsDt~peeIrkKI~k~A~p-----------GgpeTcdVF~YlkF~   83 (209)
                      +|++.+   ..++.||++  +|||+|+|  +|+|+|+|+ |++|++|||+ |+|           |+|+.|++|+|+.+.
T Consensus       205 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~-p~~I~kKI~k-a~TD~~~~~~~~~~~~p~v~~l~~i~~~~  282 (388)
T 3prh_A          205 IPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDE-PKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNLLTIYSIL  282 (388)
T ss_dssp             CCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCC-HHHHHHHHHT-CCCCSSCCCCCCTTTCHHHHHHHHHHHHH
T ss_pred             cchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCC-HHHHHHHHhh-ccCCCCCcccCCCCCCCCcchHHHHHHhc
Confidence            455544   356789965  59999998  899999997 9999999999 664           334557789999954


Q ss_pred             CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH-HhhhhhcCCCccccc
Q psy14868         84 ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE-HGKLTSSSSGRPDRY  146 (209)
Q Consensus        84 eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd-~V~eFm~~g~l~a~~  146 (209)
                       +++++++|+++|+ |+ +||+||+.|++.|+++|+|+||||+++.++ .|++.+..|.++|+-
T Consensus       283 -~~~~~eel~~~y~-g~-~~g~lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~Ga~kA~~  343 (388)
T 3prh_A          283 -GNTTIEELEAKYE-GK-GYGEFKGDLAEVVVNALKPIQDRYYELIESEELDRILDEGAERANR  343 (388)
T ss_dssp             -HTCCHHHHHHHTT-TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHc-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence             3357899999999 76 999999999999999999999999999754 499999999887654

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=99.86  E-value=9.1e-23  Score=184.82  Aligned_cols=120  Identities=15%  Similarity=0.137  Sum_probs=98.2

Q ss_pred             cCcccee---eeeccc-CC-CCCCCCCCC--CeEEccCCChHHHHHHhhcCCCCCC-------------CCccchhhhhc
Q psy14868         22 LRKVAVV---QVIRIL-LH-SKSNTTDLI--ISLFLGQDDLYAVGTKASDQPLSGR-------------PRRPDLRAYIT   81 (209)
Q Consensus        22 ~~~~~~~---~~~~gL-~g-gKMSsS~p~--SaI~LsDt~peeIrkKI~k~A~pGg-------------peTcdVF~Ylk   81 (209)
                      +|++-+.   .+++|| +| +|||+|+|+  |+|+|+|+ |++|++|||+ |+|+.             |+++++|+||.
T Consensus       186 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~-p~~i~kKI~k-A~Td~~~~~~~~~~~~~~p~v~~l~~~~~  263 (346)
T 3n9i_A          186 IPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLED-PKSVVKKIKR-AMTDSDEPALIRYDVEKKAGVSNLLDILS  263 (346)
T ss_dssp             CCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSC-HHHHHHHHHT-CCCCCCSSCCCCCCTTTCHHHHHHHHHHH
T ss_pred             ccchhccCCcccCccCCCCccccCCCCCCCCceecCCCC-HHHHHHHHHh-CcCCCCCCccccCCCCCCCChhHHHHHHH
Confidence            4444443   567899 45 399999997  99999997 9999999999 66533             23356688888


Q ss_pred             ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHH--hhhhhcCCCccccc
Q psy14868         82 SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEH--GKLTSSSSGRPDRY  146 (209)
Q Consensus        82 F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~--V~eFm~~g~l~a~~  146 (209)
                      +. +++++++|+++|++|  +||+||+.|++.|+++|+|+||||++++++.  |++.+..|.++|+-
T Consensus       264 ~~-~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G~~kA~~  327 (346)
T 3n9i_A          264 GV-TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARA  327 (346)
T ss_dssp             HH-HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hc-CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            44 335789999999877  5999999999999999999999999999754  99999999887654

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=99.82  E-value=6.9e-21  Score=169.12  Aligned_cols=108  Identities=11%  Similarity=0.055  Sum_probs=90.6

Q ss_pred             HHhhhcC-ccce--eeeecccCC-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC--CCccchhhhhcc-c------
Q psy14868         17 FITTILR-KVAV--VQVIRILLH-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR--PRRPDLRAYITS-K------   83 (209)
Q Consensus        17 ~~~~~~~-~~~~--~~~~~gL~g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg--peTcdVF~YlkF-~------   83 (209)
                      +.|.+.+ +|++  ..+++||+| +|||+| |+|+|+|+|+ |++|++|||+ |+|++  ++.|++|+|++| .      
T Consensus       179 l~R~i~~~~~~~~~~~~l~~l~G~~KMSKS-~~~~I~L~d~-~~~i~~KI~~-a~td~~~~~~~~~~~~~~~~~~~~~~i  255 (314)
T 2zp1_A          179 LARELLPKKVVCIHNPVLTGLDGEGKMSSS-KGNFIAVDDS-PEEIRAKIKK-AYCPAGVVEGNPIMEIAKYFLEYPLTI  255 (314)
T ss_dssp             HHHHHSSSCCEEEEECCCBCTTSSSBCCTT-TTCSCBTTCC-HHHHHHHHHH-SCCCTTCCTTCHHHHHHHHHCCSSEEE
T ss_pred             HHHHhcCCCcEEeeccccccCCcccccCCC-CcceecCCCC-HHHHHHHHHh-CCCCCCCCCCCcHHHHHHHHhcCCcce
Confidence            4455554 3332  367889999 799999 8999999997 9999999999 88644  455888999995 4      


Q ss_pred             ---------CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868         84 ---------ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG  127 (209)
Q Consensus        84 ---------eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e  127 (209)
                               .+.+++++|+++|++|+++||+||+.|++.|+++|+|+|+||+.
T Consensus       256 ~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~  308 (314)
T 2zp1_A          256 KRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE  308 (314)
T ss_dssp             CCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                     13458999999999999999999999999999999999999975

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=99.81  E-value=1.7e-20  Score=166.33  Aligned_cols=99  Identities=11%  Similarity=0.048  Sum_probs=86.1

Q ss_pred             ceeeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhc-cc-C-----------------
Q psy14868         26 AVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYIT-SK-I-----------------   84 (209)
Q Consensus        26 ~~~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~Ylk-F~-e-----------------   84 (209)
                      ....+++||+|+|||+| ++|+|+|+|+ |+++++||++ |+|  |.++.|++|+|++ |. +                 
T Consensus       202 l~~pll~~l~G~KMSKS-~~n~I~l~d~-p~~i~~Ki~~-a~td~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~  278 (323)
T 2cyb_A          202 LHTPILVGLDGQKMSSS-KGNYISVRDP-PEEVERKIRK-AYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDV  278 (323)
T ss_dssp             EEECCCBCTTSSBCCTT-TTCSCBTTCC-HHHHHHHHHT-SCCCTTCCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCE
T ss_pred             EecCcccCCCCCcccCC-cCceeCCCCC-HHHHHHHHHh-cCCCCCCCCcChHHHHHHHHhccccCceeEechhhcCCCC
Confidence            44578999999999999 8999999997 9999999999 775  4455588899999 43 1                 


Q ss_pred             CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868         85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG  127 (209)
Q Consensus        85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e  127 (209)
                      +.+++++|+++|++|+++||+||+.|++.|+++|+|+||||++
T Consensus       279 ~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~  321 (323)
T 2cyb_A          279 EYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV  321 (323)
T ss_dssp             EESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2348899999999999999999999999999999999999975

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=99.81  E-value=2e-20  Score=168.55  Aligned_cols=118  Identities=18%  Similarity=0.129  Sum_probs=92.5

Q ss_pred             hhhcCccce--eeeecccC-C-CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhcc-c--------
Q psy14868         19 TTILRKVAV--VQVIRILL-H-SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYITS-K--------   83 (209)
Q Consensus        19 ~~~~~~~~~--~~~~~gL~-g-gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~YlkF-~--------   83 (209)
                      +-|.+.|++  ..+++||+ | +|||+|.|+++|+|+|+ |++|++|||+ |+|  |.++ ++++.|+++ .        
T Consensus       209 r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~-p~~i~kKI~k-a~td~~~~~-~~~~~~~~~~~~~~~~~~~  285 (348)
T 2j5b_A          209 DRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT-EQEVSEKISR-AYCTDETFD-NPIFEYIKYLLLRWFGTLN  285 (348)
T ss_dssp             HTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC-HHHHHHHHHH-SCCCSSSTT-CHHHHHHHHTHHHHHSCEE
T ss_pred             HhCCCCceeecCccccCCCCcccccccCCCCCeEeecCC-HHHHHHHHhc-ccCCCCCCC-CchHhHHHHhhhhhhcccc
Confidence            334444543  36788995 4 59999999999999997 9999999999 775  5566 667888763 1        


Q ss_pred             ---CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh----chHHHhhhhhcCCC
Q psy14868         84 ---ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG----VTEEHGKLTSSSSG  141 (209)
Q Consensus        84 ---eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e----ltdd~V~eFm~~g~  141 (209)
                         .+.+++++|+++|+  ++++|+||+.|++.|+++|+|+|+|+++    .+.+.|++||..++
T Consensus       286 i~~~~~~~~~el~~~~~--~~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~~v~~~~~~~~  348 (348)
T 2j5b_A          286 LCGKIYTDIESIQEDFS--SMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPSK  348 (348)
T ss_dssp             ETTEEESSHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHTCC---
T ss_pred             cccCCcchHHHHHHHHc--ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCCC
Confidence               23457999999999  7999999999999999999999999764    34456899987653

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=99.79  E-value=6.4e-20  Score=178.48  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=88.7

Q ss_pred             eeeeccc-CCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CC----CCccchhhhhcc--cC--
Q psy14868         28 VQVIRIL-LHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GR----PRRPDLRAYITS--KI--   84 (209)
Q Consensus        28 ~~~~~gL-~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------Gg----peTcdVF~YlkF--~e--   84 (209)
                      ..+++|| +|. |||+|.|+|+|+|+|+ |++|++|||+ |+|             |+    ++.|++|+|+++  .+  
T Consensus       218 ~~~l~gL~dG~~KMSKS~~~~~I~L~D~-p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~  295 (690)
T 3p0j_A          218 HHMLAGLKQGQAKMSKSDPDSAIFMEDT-EEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARP  295 (690)
T ss_dssp             BCCCCCSSTTCSSCBTTBGGGSCBTTCC-HHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTST
T ss_pred             cCeeecCCCCCcCCCCCCCCCeeeccCC-HHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccc
Confidence            4688999 674 9999999999999997 9999999999 654             33    366788999994  22  


Q ss_pred             ---------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH
Q psy14868         85 ---------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE  131 (209)
Q Consensus        85 ---------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd  131 (209)
                               +++++++|+++|++|+++||+||+.|++.|+++|+|+||||++..+.
T Consensus       296 ~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~  351 (690)
T 3p0j_A          296 GAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEA  351 (690)
T ss_dssp             TCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence                     45689999999999999999999999999999999999999987654

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=99.79  E-value=5.1e-20  Score=167.05  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=81.6

Q ss_pred             CccceeeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC--CCccchhhhhc---------cc--------
Q psy14868         23 RKVAVVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR--PRRPDLRAYIT---------SK--------   83 (209)
Q Consensus        23 ~~~~~~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg--peTcdVF~Ylk---------F~--------   83 (209)
                      |...-..+++||+|+|||+|+++++|+|+|+ |+++++|||+ |+|+.  .+.++|+.|++         |.        
T Consensus       207 p~~l~~pll~gldG~KMSKS~~ns~I~L~d~-p~~i~kKi~~-A~td~~~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g  284 (372)
T 1n3l_A          207 RVHLMNPMVPGLTGSKMSSSEEESKIDLLDR-KEDVKKKLKK-AFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWG  284 (372)
T ss_dssp             CEEEEECCCCCSSCC-------CCSCBTTCC-HHHHHHHHHT-CCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCCGGGT
T ss_pred             CEEEecCccCCCCcccccCCCCCCeEeccCC-HHHHHHHHHH-ccCCCCCCCcccHHHHHHHhhhhhhcceeeccccccc
Confidence            3334467889999999999999999999997 9999999999 88755  45577788877         42        


Q ss_pred             --CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHh
Q psy14868         84 --ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK  126 (209)
Q Consensus        84 --eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~  126 (209)
                        .+.+++++++++|++|+++||+||+.|++.|+++|.|+|+||+
T Consensus       285 ~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~  329 (372)
T 1n3l_A          285 GNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN  329 (372)
T ss_dssp             CCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence              1456899999999999999999999999999999999999999

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=99.78  E-value=2e-19  Score=162.84  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             hcCccce--eeeecccC-----------------CCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC--CCCccchhhh
Q psy14868         21 ILRKVAV--VQVIRILL-----------------HSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG--RPRRPDLRAY   79 (209)
Q Consensus        21 ~~~~~~~--~~~~~gL~-----------------ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG--gpeTcdVF~Y   79 (209)
                      |.++|..  ..+++||+                 |+|||+|+|+++|+|+|+ |++|++||++ |+|+  +++.++||+|
T Consensus       202 ~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d~-p~~i~~Ki~~-a~td~~~~~~~~v~~~  279 (364)
T 2cya_A          202 GRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDS-DDDIRRKIRK-AYCPAKQVQGNPVLEI  279 (364)
T ss_dssp             TCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTCC-HHHHHHHHHT-SCCCTTCCTTCHHHHH
T ss_pred             CCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccCC-HHHHHHHHHh-CcCCCCCCCCCcHHHH
Confidence            3445443  46788999                 689999999999999998 9999999999 8864  4555888999


Q ss_pred             hc-cc-C------------------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868         80 IT-SK-I------------------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG  127 (209)
Q Consensus        80 lk-F~-e------------------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e  127 (209)
                      ++ |. +                  +.+++++++++|.+|++++++||+.|++.|+++|+|+|+||++
T Consensus       280 ~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~  347 (364)
T 2cya_A          280 ARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG  347 (364)
T ss_dssp             HHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98 32 2                  1237899999999999999999999999999999999999994

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=99.78  E-value=2.3e-19  Score=163.46  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=83.4

Q ss_pred             eeeeccc-CCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCC--CCCccch--------hhhhc-c-cC---------
Q psy14868         28 VQVIRIL-LHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSG--RPRRPDL--------RAYIT-S-KI---------   84 (209)
Q Consensus        28 ~~~~~gL-~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG--gpeTcdV--------F~Ylk-F-~e---------   84 (209)
                      ..+++|| +|. |||+|+|+|+|+|+|+ |++|++|||+ |+|+  .++.+++        |.|+. | .+         
T Consensus       235 ~p~l~gL~dG~~KMSKS~~~~~I~L~D~-p~~i~~KI~k-A~td~~~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~  312 (373)
T 3vgj_A          235 HGMLPGLLEGQEKMSKSDENSAIFMDDS-ESDVNRKIKK-AYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDK  312 (373)
T ss_dssp             BCCCCCSSTTCCSCCSSSTTCCCBTTCC-HHHHHHHHHH-SCCCTTCCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCE
T ss_pred             CCeeecCCCCCCCCcCCCCCCeeecCCC-HHHHHHHHHh-CcCCCCCCCCCcchhhhhhhhhhhhhhhcccccccccCCc
Confidence            5678899 774 9999999999999997 9999999999 7753  3344443        45554 3 11         


Q ss_pred             CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868         85 TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus        85 DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      ..+++++++++|++|++++|+||+.|++.|+++|+|+|+|+++..+
T Consensus       313 ~~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~  358 (373)
T 3vgj_A          313 TYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIE  358 (373)
T ss_dssp             EECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CcccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence            1247899999999999999999999999999999999999998654

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=99.78  E-value=1.6e-19  Score=164.32  Aligned_cols=99  Identities=10%  Similarity=0.123  Sum_probs=87.6

Q ss_pred             eeeecccCC------------------CCCCCCCCCCeEEccCCChHHHHHHhhcCCCCC--CCCccchhhhhc-c-cCC
Q psy14868         28 VQVIRILLH------------------SKSNTTDLIISLFLGQDDLYAVGTKASDQPLSG--RPRRPDLRAYIT-S-KIT   85 (209)
Q Consensus        28 ~~~~~gL~g------------------gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pG--gpeTcdVF~Ylk-F-~eD   85 (209)
                      ..+++||+|                  +|||+|.|+++|+|+|+ |++|++||++ |+|+  +++.++|++|++ | +.+
T Consensus       223 ~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~-p~~i~~KI~~-A~t~~~~~~~~~v~~~~~~~~f~~  300 (375)
T 2cyc_A          223 HHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDS-PEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFRE  300 (375)
T ss_dssp             ECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCC-HHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTTTSS
T ss_pred             cccccCCCCcccccccchhhhhhhhhhhcccCCCCCCeeccCCC-HHHHHHHHHH-hcCCCCCCCCChHHHHHHHHhcCC
Confidence            468899999                  79999999999999997 9999999999 8854  456688899998 4 233


Q ss_pred             ------------------HHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy14868         86 ------------------ARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGV  128 (209)
Q Consensus        86 ------------------DeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~el  128 (209)
                                        .+++++++++|++|++++++||+.|++.|+++|+|+|+||++-
T Consensus       301 ~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~  361 (375)
T 2cyc_A          301 EPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH  361 (375)
T ss_dssp             SSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred             CCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                              3579999999999999999999999999999999999999965

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=159.24  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=81.4

Q ss_pred             ccceeeeecccC-CCCCCCCCCCCeEEccCCChHHHHHHhhcCCCCCC--CCccchhhhhcc------------------
Q psy14868         24 KVAVVQVIRILL-HSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGR--PRRPDLRAYITS------------------   82 (209)
Q Consensus        24 ~~~~~~~~~gL~-ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGg--peTcdVF~YlkF------------------   82 (209)
                      ......+++||+ |+|||+|+|+++|+|+|+ |++|++|||+ |+|+.  ++.++|+.|+++                  
T Consensus       212 ~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~-p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~  289 (394)
T 2dlc_X          212 AHLMNPMVPGLAQGGKMSASDPNSKIDLLEE-PKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFF  289 (394)
T ss_dssp             EEEEECCCCCCC----------CCSCBTTCC-HHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEE
T ss_pred             EEEecccccCCCCCCcCCCCCCCCEEeccCC-HHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEE
Confidence            334467899999 999999999999999997 9999999999 77544  455778888542                  


Q ss_pred             -cC--------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhc
Q psy14868         83 -KI--------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSS  138 (209)
Q Consensus        83 -~e--------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~  138 (209)
                       ..        +.+++++|+++|++|+++|++||+.|++.|+++|.|+|+|+++-.+  +++.+.
T Consensus       290 i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~~~--~~~~~~  352 (394)
T 2dlc_X          290 IDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKE--FQEASE  352 (394)
T ss_dssp             ECCCGGGSCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHH
T ss_pred             EeccccccCcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHCCHH--HHHHHh
Confidence             00        2247899999999999999999999999999999999999985432  444444

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=99.65  E-value=6.4e-17  Score=144.25  Aligned_cols=91  Identities=10%  Similarity=0.100  Sum_probs=81.8

Q ss_pred             eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868         29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT  103 (209)
Q Consensus        29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc  103 (209)
                      .+++||+|+|||+|.|+ +|+|+|   + |+++++||++ +     +.++|+.|++ | ..+++++++|+++|++|. +|
T Consensus       226 pll~gldG~KMSKS~~n-~I~L~d~~ts-p~~~~~ki~~-~-----~d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~-~~  296 (322)
T 2yxn_A          226 PLITKADGTKFGKTEGG-AVWLDPKKTS-PYKFYQFWIN-T-----ADADVYRFLKFFTFMSIEEINALEEEDKNSG-KA  296 (322)
T ss_dssp             CCCBCTTSCBTTEETTE-ECBSSTTTSC-HHHHHHHHHT-C-----CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHS-SC
T ss_pred             CccCCCCcccccCCCCC-eeeccCCCCC-HHHHHHHHhC-C-----CcccHHHHHHHHHcCCHHHHHHHHHHHHcCC-CH
Confidence            56789999999999996 999999   9 9999999998 3     3477899999 5 347889999999999998 99


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhc
Q psy14868        104 GELKKILIDTITPIVTHHQEAMKGV  128 (209)
Q Consensus       104 GEcKK~LaE~I~e~LaphQERR~el  128 (209)
                      |+||+.|++.|+++|.+++++|+..
T Consensus       297 ~~~K~~La~~i~~~l~~~~~~~~a~  321 (322)
T 2yxn_A          297 PRAQYVLAEQVTRLVHGEEGLQAAK  321 (322)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhh
Confidence            9999999999999999999999753

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=99.58  E-value=7.4e-16  Score=142.94  Aligned_cols=102  Identities=10%  Similarity=-0.042  Sum_probs=87.8

Q ss_pred             eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccchH
Q psy14868         28 VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLTG  104 (209)
Q Consensus        28 ~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~IgcG  104 (209)
                      ..+++||+|. |||+|.++ +|+|+|+ |+++++||++ +     .+++|+.|++ | ..+.+++++++++      +++
T Consensus       221 ~pll~gldG~~KMSKS~~n-~I~L~ds-p~~i~~Ki~~-~-----~d~~v~~~l~~ft~~~~eei~~~~~~------~~~  286 (432)
T 1h3f_A          221 MPLLVGLDGREKMSKSLDN-YIGLTEP-PEAMFKKLMR-V-----PDPLLPSYFRLLTDLEEEEIEALLKA------GPV  286 (432)
T ss_dssp             ECCCBCTTSSSBCCGGGTC-CCBTTSC-HHHHHHHHHT-S-----CGGGHHHHHHHHCCCCHHHHHHHHHH------CHH
T ss_pred             cccccCCCCccccCcCCCC-eeCCCCC-HHHHHHHHhC-C-----CccHHHHHHHHcCCCCHHHHHHHHhh------ChH
Confidence            4678899996 99999976 8999997 9999999998 3     3467899999 5 4466788887765      899


Q ss_pred             HHHHHHHHHHHHHhH----HHHHHHhhchHHH--hhhhhcC----CCccc
Q psy14868        105 ELKKILIDTITPIVT----HHQEAMKGVTEEH--GKLTSSS----SGRPD  144 (209)
Q Consensus       105 EcKK~LaE~I~e~La----phQERR~eltdd~--V~eFm~~----g~l~a  144 (209)
                      +||+.|++.|++++.    ||||||+++++ .  |++++..    |.+.+
T Consensus       287 ~~K~~LA~~i~~~l~~~~~pirerr~~~~~-~~~v~~il~~~~~~g~~~a  335 (432)
T 1h3f_A          287 PAHRVLARLLTAAYALPQIPPRIDRAFYES-LGYAWEAFGRDKEAGPEEV  335 (432)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCSCCSHHHHHH-TTCCGGGTTCCTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHhhc-hHHHHHHHhhccccCHHHH
Confidence            999999999999999    99999999998 5  8999988    66643

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=99.57  E-value=2.2e-15  Score=136.36  Aligned_cols=93  Identities=14%  Similarity=0.091  Sum_probs=69.9

Q ss_pred             eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868         29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT  103 (209)
Q Consensus        29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc  103 (209)
                      .+++||+|+|||+| +.++|+|+|   + |+++++||+++.     + ++|+.|++ | ..+++++++|+++|++|. ++
T Consensus       245 pll~~ldG~KMSKS-~~naI~L~d~~ts-p~~i~~ki~~~~-----D-~~v~~~l~~~t~~~~~~i~~l~~~~~~g~-~~  315 (356)
T 2pid_A          245 PLITSTTGAKLGKS-AGNAVWLNRDKTS-PFELYQFFVRQP-----D-DSVERYLKLFTFLPLPEIDHIMQLHVKEP-ER  315 (356)
T ss_dssp             CCCC--------------CCBSSTTTSC-HHHHHHHHHTCC-----H-HHHHHHHHHHCCCCHHHHHHHHHHHHHCG-GG
T ss_pred             ccccCCCcccccCC-CCCeeeccCCCCC-HHHHHHHHHcCC-----c-hhHHHHHHHHHcCCchHHHHHHHHHhcCC-CH
Confidence            67889999999999 577999999   8 999999999832     2 56788888 5 447789999999999985 99


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        104 GELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       104 GEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      |+||+.|++.|+++|..++++|+....
T Consensus       316 ~~~K~~La~~v~~~l~g~~~~~~a~~~  342 (356)
T 2pid_A          316 RGPQKRLAAEVTKLVHGREGLDSAKRC  342 (356)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            999999999999999999999987664

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=99.50  E-value=2.2e-14  Score=133.36  Aligned_cols=94  Identities=14%  Similarity=0.059  Sum_probs=83.7

Q ss_pred             eeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccch
Q psy14868         29 QVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALLT  103 (209)
Q Consensus        29 ~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Igc  103 (209)
                      .+++||+|.|||+|.++++|+|+|   + |+++++||++++     | ++|+.|++ | ..+++++++|+++|++|. ++
T Consensus       222 plL~~ldG~KMSKS~~nsaI~L~d~~ts-p~~i~qki~~~~-----D-~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~~  293 (432)
T 2jan_A          222 PLVTAADGTKFGKSTGGGSLWLDPQMTS-PYAWYQYFVNTA-----D-ADVIRYLRWFTFLSADELAELEQATAQRP-QQ  293 (432)
T ss_dssp             CCCBCTTSCBTTBCSSSCBCBSSTTTSC-HHHHHHHHHTCC-----H-HHHHHHHHHHSCCCHHHHHHHHHHHHHCG-GG
T ss_pred             ccccCCCcCcCCCCCCCCeEEccCCCCC-HHHHHHHHhcCC-----c-hhHHHHHHHHHcCChHHHHHHHHHHhhcc-CH
Confidence            578899999999999999999999   9 999999999832     2 56888888 4 457789999999999998 99


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        104 GELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       104 GEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      +++|+.|++.|++++...++.++....
T Consensus       294 ~~~K~~LA~~v~~~~hg~~~~~~a~~~  320 (432)
T 2jan_A          294 RAAQRRLASELTVLVHGEAATAAVEHA  320 (432)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            999999999999999999998876654

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=99.50  E-value=2.5e-14  Score=131.14  Aligned_cols=94  Identities=9%  Similarity=0.082  Sum_probs=82.4

Q ss_pred             eeeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868         28 VQVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL  102 (209)
Q Consensus        28 ~~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig  102 (209)
                      ..+++||+|.|||+|.+ ++|+|+|   + |+++.+||++++     + ++|+.|++ | ..+++++++|+++|++|. +
T Consensus       283 ~pll~~ldG~KMSKS~~-naI~L~d~~ts-p~~i~qki~~~~-----D-~~v~~~l~~ft~l~~~ei~~l~~~~~~g~-~  353 (392)
T 1y42_X          283 VPLLTDSSGAKFGKSAG-NAIWLDPYQTS-VFDFYGYFVRRS-----D-QEVENLLKLFTFMPISEITKTMEEHIKDP-S  353 (392)
T ss_dssp             CCCCBCTTCCBTTBCSS-SBCBSSTTTSC-HHHHHHHHHTCC-----T-TTHHHHHHHHCCCCHHHHHHHHHHHHHCG-G
T ss_pred             cccCcCCchhhccCCCC-CeeeccCCCCC-HHHHHHHHHcCC-----c-hhHHHHHHHHHhCChhHHHHHHHHHhcCC-C
Confidence            46889999999999975 6999999   9 999999999842     2 57788888 4 447789999999999998 9


Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        103 TGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       103 cGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      ++++|+.|++.|+++|..+++.++....
T Consensus       354 ~~~~K~~LA~~v~~~lhg~~~~~~a~~~  381 (392)
T 1y42_X          354 KRVAQHTLAREVVTLVHGKQEASAAEDQ  381 (392)
T ss_dssp             GCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            9999999999999999999999987654

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=99.43  E-value=1e-13  Score=127.93  Aligned_cols=94  Identities=12%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             eeeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868         28 VQVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL  102 (209)
Q Consensus        28 ~~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig  102 (209)
                      ..+++||+|.|||+|.+ ++|+|+|   + |+++++||+++.      -++|+.|++ | ..+++++++|+++|++|. +
T Consensus       221 ~pll~~ldG~KMSKS~~-naI~L~d~~ts-p~~i~~ki~~~~------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~-~  291 (420)
T 1jil_A          221 IPLVTKSDGKKFGKSES-GAVWLDAEKTS-PYEFYQFWINQS------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAP-H  291 (420)
T ss_dssp             ECCCBCTTSCBTTBCSS-SBCBSSTTTSC-HHHHHHHHHTCC------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCG-G
T ss_pred             cccccCCccccccCCCC-CeEecCCCCCC-HHHHHHHHhcCC------chhHHHHHHHHHcCCHHHHHHHHHHHhcCC-C
Confidence            46788999999999996 5999999   9 999999999832      266788888 5 447789999999999998 9


Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        103 TGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       103 cGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      ++++|+.|++.|++++...++.++....
T Consensus       292 ~~~~K~~La~~v~~~~hg~~~~~~a~~~  319 (420)
T 1jil_A          292 LREAQKTLAEEVTKFIHGEDALNDAIRI  319 (420)
T ss_dssp             GCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            9999999999999999999998876554

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=99.40  E-value=2.3e-13  Score=125.98  Aligned_cols=94  Identities=12%  Similarity=0.158  Sum_probs=81.7

Q ss_pred             eeeecccCCCCCCCCCCCCeEEccC---CChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHHHHHHHHcccCccc
Q psy14868         28 VQVIRILLHSKSNTTDLIISLFLGQ---DDLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKADIIIQDYTSGALL  102 (209)
Q Consensus        28 ~~~~~gL~ggKMSsS~p~SaI~LsD---t~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeLEeI~~~crsG~Ig  102 (209)
                      ..+++||+|.|||+|.+ ++|+|+|   + |+++++||+++.      -++|+.|++ | ..+++++++|+++|++|. +
T Consensus       220 ~pll~~ldG~KMSKS~~-naI~L~d~~ts-p~~i~qki~~~~------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~  290 (419)
T 2ts1_A          220 IPLVTKADGTKFGKTES-GTIWLDKEKTS-PYEFYQFWINTD------DRDVIRYLKYFTFLSKEEIEALEQELREAP-E  290 (419)
T ss_dssp             ECCCCCTTSCCTTCCSS-CCCBSSTTTSC-HHHHHHHHHTCC------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCT-T
T ss_pred             cccccCCCcccccCCCC-CeEecCCCCCC-HHHHHHHHhcCC------chhHHHHHHHHHcCCHHHHHHHHHHHHccC-C
Confidence            46788999999999975 6999999   9 999999999832      266788888 4 447789999999999998 9


Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHhhchH
Q psy14868        103 TGELKKILIDTITPIVTHHQEAMKGVTE  130 (209)
Q Consensus       103 cGEcKK~LaE~I~e~LaphQERR~eltd  130 (209)
                      ++++|+.|++.|++++...++.++....
T Consensus       291 ~~~~K~~LA~~v~~~~hg~~~~~~a~~~  318 (419)
T 2ts1_A          291 KRAAQKTLAEEVTKLVHGEEALRQAIRI  318 (419)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            9999999999999999999998876553

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=99.40  E-value=2.9e-13  Score=131.92  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=82.2

Q ss_pred             HHHhhhcCc---ccee--eeecccCCC-CC-CCCCCCCeEEccCCChHHHHHHhhcCCCC-CCCCccchhhhhccc-C--
Q psy14868         16 AFITTILRK---VAVV--QVIRILLHS-KS-NTTDLIISLFLGQDDLYAVGTKASDQPLS-GRPRRPDLRAYITSK-I--   84 (209)
Q Consensus        16 ~~~~~~~~~---~~~~--~~~~gL~gg-KM-SsS~p~SaI~LsDt~peeIrkKI~k~A~p-GgpeTcdVF~YlkF~-e--   84 (209)
                      -+-|..+++   |+..  .+++||+|. || |+++|+|+|||+|+ |++|++||++ ||+ .+.+.++|++|.++. .  
T Consensus       535 ~LaRd~~~~~~~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~-~~~i~~KI~k-A~c~p~ve~np~l~~~~~~~~~~  612 (690)
T 3p0j_A          535 AFAREYTKERIDCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDN-DMDIRRKIKK-AYSAPNEEANPVISVAQHLLAQH  612 (690)
T ss_dssp             HHHHHHTTTCSEEEECCCCSSCCSSCCCC-------CCSCBTTCC-HHHHHHHHHH-SCCCTTCSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcccccccccccCCCcccccCCCCCCCeeeccCC-HHHHHHHHHH-hcCCCCCCCChHHHHHHHHhccC
Confidence            344555544   3333  588999854 55 46789999999998 9999999999 873 235557777777731 0  


Q ss_pred             ---------------CHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhh
Q psy14868         85 ---------------TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKG  127 (209)
Q Consensus        85 ---------------DDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~e  127 (209)
                                     .-++.++++++|.+|+|..+|+|+.|++.|+++|+|+|||.+.
T Consensus       613 ~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~  670 (690)
T 3p0j_A          613 GALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNG  670 (690)
T ss_dssp             SCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                           0247899999999999999999999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1r6ta2	386	c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (	7e-06

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 36  HSKSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRA-----------YITSKI 84
              ++  +  I L      +     K +                                
Sbjct: 268 KMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLE 327

Query: 85  TARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGK 134
              K + I +DYTSGA+LTGELKK LI+ + P++  HQ   K VT+E  K
Sbjct: 328 DDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVK 377

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	99.95
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	99.77
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	99.77
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	99.69
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	99.14
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	98.01
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	97.83
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	85.67

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=221.62  Aligned_cols=124  Identities=31%  Similarity=0.343  Sum_probs=111.5

Q ss_pred             HhhhcCcccee--eeecccCC--CCCCCCCCCCeEEccCCChHHHHHHhhcCCCC-------------CCCCccchhhhh
Q psy14868         18 ITTILRKVAVV--QVIRILLH--SKSNTTDLIISLFLGQDDLYAVGTKASDQPLS-------------GRPRRPDLRAYI   80 (209)
Q Consensus        18 ~~~~~~~~~~~--~~~~gL~g--gKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p-------------GgpeTcdVF~Yl   80 (209)
                      .+-+.++|+++  +|++||+|  +|||||+|+++|+|+|+ |++|++||++++++             |+|+.|.+|+|+
T Consensus       244 ~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~-~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~~~l  322 (386)
T d1r6ta2         244 PRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT-AKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYL  322 (386)
T ss_dssp             GGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCC-HHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHH
T ss_pred             HHhCCCCceeeccccccCCCCcccccccCCCCceeeecCC-HHHHHHHhhheeeecCCcccccccccCCCcchhHHHHHH
Confidence            45667777765  67899999  69999999999999997 99999999997654             445656779999


Q ss_pred             c-ccCCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHHHhhhhhcCCCc
Q psy14868         81 T-SKITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEEHGKLTSSSSGR  142 (209)
Q Consensus        81 k-F~eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd~V~eFm~~g~l  142 (209)
                      . |.+|++++++++++|++|+++|||||+.|++.|+++|+||||||++++++.|++||.++++
T Consensus       323 ~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl  385 (386)
T d1r6ta2         323 TFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKL  385 (386)
T ss_dssp             HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCC
T ss_pred             HHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            9 5889999999999999999999999999999999999999999999999999999999886

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=2.4e-20  Score=162.19  Aligned_cols=114  Identities=12%  Similarity=0.116  Sum_probs=88.9

Q ss_pred             eeeecccCCC-CCCCCCC--CCeEEccCCChHHHHHHhhcCCCC-----------CCCCccchhhhhcccCCHHHHHHHH
Q psy14868         28 VQVIRILLHS-KSNTTDL--IISLFLGQDDLYAVGTKASDQPLS-----------GRPRRPDLRAYITSKITARKADIII   93 (209)
Q Consensus        28 ~~~~~gL~gg-KMSsS~p--~SaI~LsDt~peeIrkKI~k~A~p-----------GgpeTcdVF~YlkF~eDDeeLEeI~   93 (209)
                      -+++++++|+ |||.|++  +++|+|+|+ |++|++||++ |+|           |+|+.|++|.++.+..+ .+.+++.
T Consensus       181 ~~~~~~~d~~~kmskS~~~~~~~I~l~D~-~~~i~kKI~~-a~td~~~~~~~~~~~~p~~~~l~~i~~~~~~-~~~~e~~  257 (326)
T d1i6la_         181 ARIMSLVDPTKKMSKSDPNPKAYITLLDD-AKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNLLNIYSTLSG-QSIEELE  257 (326)
T ss_dssp             SSCBCSSCTTSBCCTTCSCGGGCCBTTCC-HHHHHHHHHH-CCCCSSCCCCCCTTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred             ceeeecCCccccccccCCCccceeeccCC-HHHHHHHHHh-hhccccCCccccccCCCCccHHHHHHHHcCC-CcHHHHH
Confidence            3578888754 7776654  479999997 9999999999 553           44555888998884323 2456677


Q ss_pred             HHcccCccchHHHHHHHHHHHHHHhHHHHHHHhhchHH-HhhhhhcCCCccccc
Q psy14868         94 QDYTSGALLTGELKKILIDTITPIVTHHQEAMKGVTEE-HGKLTSSSSGRPDRY  146 (209)
Q Consensus        94 ~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~eltdd-~V~eFm~~g~l~a~~  146 (209)
                      .+|  ++++||+||+.|++.|+++|+|+||||+++.++ .|++.+..|.++||-
T Consensus       258 ~~~--~~~~~gdlK~~lae~i~~~L~PiRer~~~l~~~~~l~~iL~~Ga~kAr~  309 (326)
T d1i6la_         258 RQY--EGKGYGVFKADLAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANR  309 (326)
T ss_dssp             HHT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHH
T ss_pred             HHh--cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            665  467899999999999999999999999998653 489999988887653

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.77  E-value=1.4e-19  Score=156.55  Aligned_cols=106  Identities=12%  Similarity=0.084  Sum_probs=77.8

Q ss_pred             HHHhhhcCccce---eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhhc-cc-----
Q psy14868         16 AFITTILRKVAV---VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYIT-SK-----   83 (209)
Q Consensus        16 ~~~~~~~~~~~~---~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~Ylk-F~-----   83 (209)
                      -+-|.+.|++.+   .++++||+|+ |||+| |+|+|+|+|+ |++|++|||+ |+|  |..+..+++++.. |.     
T Consensus       178 ~l~rdl~~~~~~~~~~~~l~gldG~~KMSKS-~~n~I~L~D~-~e~I~~KI~~-a~td~~~~~~~p~~~~~~~~~~~~~~  254 (306)
T d1j1ua_         178 MLARELLPKKVVCIHNPVLTGLDGEGKMSSS-KGNFIAVDDS-PEEIRAKIKK-AYCPAGVVEGNPIMEIAKYFLEYPLT  254 (306)
T ss_dssp             HHHHHHSSSCCEEEEECCCCCTTCCC--------CSCBTTCC-HHHHHHHHHH-SCCCTTCCTTCHHHHHHHHTCCSSEE
T ss_pred             HHhhhcccccceecccccccCcccccccccc-cccccccCCC-HHHHHHHHhh-eeccCCcccCCCchHHHHHhhcccHh
Confidence            356777777554   5788999996 88888 6789999997 9999999999 553  3333334444443 11     


Q ss_pred             ----------CCHHHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHH
Q psy14868         84 ----------ITARKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEA  124 (209)
Q Consensus        84 ----------eDDeeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQER  124 (209)
                                .+.+++++++++|++|+++|+|||+.|++.|+++|+|+|||
T Consensus       255 ~~~~~~~~~~~~~~~~~el~~~~~~g~l~~~~~K~~lae~i~~~l~pirer  305 (306)
T d1j1ua_         255 IKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKR  305 (306)
T ss_dssp             ECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHhccCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence                      12357899999999999999999999999999999999997

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.6e-18  Score=146.77  Aligned_cols=98  Identities=13%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             eeeeecccCCCCCCCCCCCCeEEccCCChHHHHHHhhcCCCC--CCCCccchhhhh--------c-c-cCCH--------
Q psy14868         27 VVQVIRILLHSKSNTTDLIISLFLGQDDLYAVGTKASDQPLS--GRPRRPDLRAYI--------T-S-KITA--------   86 (209)
Q Consensus        27 ~~~~~~gL~ggKMSsS~p~SaI~LsDt~peeIrkKI~k~A~p--GgpeTcdVF~Yl--------k-F-~eDD--------   86 (209)
                      .+.+++||+|.|||+|+|+++|||+|+ +++|++||++ |++  |..+.+.+++|.        . + ..++        
T Consensus       208 ~~pll~~l~g~kmsks~~~~~I~l~D~-~~~I~kKI~~-a~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (339)
T d1n3la_         208 MNPMVPGLTGSKMSSSEEESKIDLLDR-KEDVKKKLKK-AFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKT  285 (339)
T ss_dssp             EECCCCCSSCC-------CCSCBTTCC-HHHHHHHHHT-CCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEE
T ss_pred             eeccccccccccccccchhhcccccCC-HHHHHHHHhh-ccCCCCCcccCccccchhhhccchhhccccccHHHhcCCCC
Confidence            456888999999999999999999998 9999999999 553  444444434333        3 2 1111        


Q ss_pred             -HHHHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHh
Q psy14868         87 -RKADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK  126 (209)
Q Consensus        87 -eeLEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~  126 (209)
                       +.+++++++|.+|++++|++|+.|++.|+++|+|+|||++
T Consensus       286 ~~~~~el~~~y~~g~l~~~dlK~~la~~i~~~l~pire~~~  326 (339)
T d1n3la_         286 YTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN  326 (339)
T ss_dssp             ESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             3478999999999999999999999999999999999985

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=2.8e-11  Score=105.40  Aligned_cols=87  Identities=16%  Similarity=0.048  Sum_probs=63.8

Q ss_pred             hcCccce--eeeecccCCC-CCCCCCCCCeEEccCCChHHHHHHhhcCCCCCCCCccchhhhhc-ccCCHHHHHHHHHHc
Q psy14868         21 ILRKVAV--VQVIRILLHS-KSNTTDLIISLFLGQDDLYAVGTKASDQPLSGRPRRPDLRAYIT-SKITARKADIIIQDY   96 (209)
Q Consensus        21 ~~~~~~~--~~~~~gL~gg-KMSsS~p~SaI~LsDt~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F~eDDeeLEeI~~~c   96 (209)
                      +..++++  +.+++||+|+ |||+| +.|+|||+|+ |+++++||++.     +| .+|+.|++ |.. . .+++|++-+
T Consensus       208 ~~~~~~~~~~p~L~gldG~~KMSKS-~~naI~L~ds-p~~i~~Ki~~~-----~D-~~v~~~~~~~t~-~-~~~ei~~~~  277 (343)
T d1h3fa1         208 GQSPQVCFLMPLLVGLDGREKMSKS-LDNYIGLTEP-PEAMFKKLMRV-----PD-PLLPSYFRLLTD-L-EEEEIEALL  277 (343)
T ss_dssp             TCCCCEEEEECCCBCTTSSSBCCGG-GTCCCBTTSC-HHHHHHHHHTS-----CG-GGHHHHHHHHCC-C-CHHHHHHHH
T ss_pred             Cccccceeeccccccccccchhhcc-cccceeeech-hHHHHHHHhcC-----Cc-cchhhHHHHccC-C-CHHHHHHHH
Confidence            3344443  5689999996 99999 5789999997 99999999983     22 46799998 422 1 234555555


Q ss_pred             ccCccchHHHHHHHHHHHHHHhHH
Q psy14868         97 TSGALLTGELKKILIDTITPIVTH  120 (209)
Q Consensus        97 rsG~IgcGEcKK~LaE~I~e~Lap  120 (209)
                      +.|   ..++|+.|++.|...+..
T Consensus       278 ~~~---~~~~k~~La~~i~~~~~~  298 (343)
T d1h3fa1         278 KAG---PVPAHRVLARLLTAAYAL  298 (343)
T ss_dssp             HHC---HHHHHHHHHHHHHHHHHS
T ss_pred             HhC---CHHHHHHHHHHHHHHHcC
Confidence            544   468999999999877653

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.01  E-value=3.8e-06  Score=73.19  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=74.1

Q ss_pred             HHhhhc-Ccccee---eeecccCCCCCCCCCCCCeEEccCC--ChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHH
Q psy14868         17 FITTIL-RKVAVV---QVIRILLHSKSNTTDLIISLFLGQD--DLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARK   88 (209)
Q Consensus        17 ~~~~~~-~~~~~~---~~~~gL~ggKMSsS~p~SaI~LsDt--~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDee   88 (209)
                      +++... .+++++   -+++|++|.|||+| ..++|.|.++  +|.++..|+++.+      --.|..|++ | .-+.++
T Consensus       205 l~~~~~~~~~~~~it~pLl~~~~G~Km~KS-~~n~i~l~~~~tsP~~~y~k~~n~~------D~~i~~yl~~~T~l~~~e  277 (323)
T d1jila_         205 LMRRMYGQTDAYGLTIPLVTKSDGKKFGKS-ESGAVWLDAEKTSPYEFYQFWINQS------DEDVIKFLKYFTFLGKEE  277 (323)
T ss_dssp             HHHHHHCCCCCEEEEECCCBCTTSCBTTBC-SSSBCBSSTTTSCHHHHHHHHHTCC------HHHHHHHHHHHCCCCHHH
T ss_pred             hhhhhcccccceEEecccccchhhhhhhhc-CCCCeeeecccCChHHHHHHhhcCC------HHHHHHHHHHHhcCCHHH
Confidence            455543 345554   45669999999999 5789999872  3999999999832      245688888 5 447779


Q ss_pred             HHHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHH
Q psy14868         89 ADIIIQDYTSGALLTGELKKILIDTITPIVTHHQEA  124 (209)
Q Consensus        89 LEeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQER  124 (209)
                      ++++.+....|. .--+.|+.||+.|.+++--..+.
T Consensus       278 i~~l~~~~~~~~-~pr~~Kk~LA~ei~~~~HG~~~a  312 (323)
T d1jila_         278 IDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDAL  312 (323)
T ss_dssp             HHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHCCHHHH
Confidence            999998877775 44589999999999998643333

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=97.83  E-value=1.3e-05  Score=69.85  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             Hhhhc-Cccceeee---ecccCCCCCCCCCCCCeEEccCC--ChHHHHHHhhcCCCCCCCCccchhhhhc-c-cCCHHHH
Q psy14868         18 ITTIL-RKVAVVQV---IRILLHSKSNTTDLIISLFLGQD--DLYAVGTKASDQPLSGRPRRPDLRAYIT-S-KITARKA   89 (209)
Q Consensus        18 ~~~~~-~~~~~~~~---~~gL~ggKMSsS~p~SaI~LsDt--~peeIrkKI~k~A~pGgpeTcdVF~Ylk-F-~eDDeeL   89 (209)
                      ++... +++++.-.   ++|.+|.||++|. .++|+|.++  +|.+..+|+++.      +...|..|++ | ..+.+++
T Consensus       206 i~~~~~~~~~~~lT~PLL~~~~G~K~~ks~-~n~i~l~~~~tsp~~~yq~~~n~------~D~~v~~yl~~~T~~~~eeI  278 (319)
T d2ts1a_         206 IRKTKGEARAFGLTIPLVTKADGTKFGKTE-SGTIWLDKEKTSPYEFYQFWINT------DDRDVIRYLKYFTFLSKEEI  278 (319)
T ss_dssp             HHHHHC--CCEEEEECCCCCTTSCCTTCCS-SCCCBSSTTTSCHHHHHHHHHTC------CHHHHHHHHHHHCCCCHHHH
T ss_pred             HHHhcccccceEeecccccccccceeeecC-CCCcccccccCCHHHHHHHhcCC------CHHHHHHHHHHHhcCCHHHH
Confidence            34433 56676554   4588999999984 678888762  499999999982      2245699999 4 4478899


Q ss_pred             HHHHHHcccCccchHHHHHHHHHHHHHHhHHHHHHHh
Q psy14868         90 DIIIQDYTSGALLTGELKKILIDTITPIVTHHQEAMK  126 (209)
Q Consensus        90 EeI~~~crsG~IgcGEcKK~LaE~I~e~LaphQERR~  126 (209)
                      ++|.++..+|. .--+.|+.||+.|..++--..+.++
T Consensus       279 ~~i~~~~~~~~-~~r~~K~~LA~eit~l~HG~~~a~~  314 (319)
T d2ts1a_         279 EALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQ  314 (319)
T ss_dssp             HHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999998886 4459999999999998876655543

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=85.67  E-value=0.14  Score=40.85  Aligned_cols=32  Identities=13%  Similarity=-0.211  Sum_probs=23.5

Q ss_pred             hhcCccceeeeecccCCCCCCCCCCCCeEEccC
Q psy14868         20 TILRKVAVVQVIRILLHSKSNTTDLIISLFLGQ   52 (209)
Q Consensus        20 ~~~~~~~~~~~~~gL~ggKMSsS~p~SaI~LsD   52 (209)
                      ...+.+-+..++..++|+|||+|. .++|.+.|
T Consensus       279 ~~~~~v~~~~~~l~~~G~KMSKS~-Gn~i~~~e  310 (348)
T d2d5ba2         279 PMYRHLNVGGFLLGPDGRKMSKTL-GNVVDPFA  310 (348)
T ss_dssp             CCCSEEEEECCEECTTSSCCCTTT-TCCCCHHH
T ss_pred             CCCCEEEeCceEEcccCCCCcCCC-CcccCHHH
Confidence            334555566888899999999997 56676544