Psyllid ID: psy14877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLNGTRN
Secondary Structure (PSIPRED)
ccEEcccHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mdgafmchhNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALsylklesgsifskqklpaLGLALFGVMVAFVGLIQILYAIQSgsvskcmhglampycnktqlngtrn
Flexible Loop (DISEMBL)
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMpycnktqlngtrn
Low Complexity Region (SEG)
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLNGTRN
Disordered region (IsUnstruct)
***AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNK********
Disordered Region (DISOPRED)
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQS********GLAMPYCNKTQL*****
Disordered Region (DISEMBL)
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLNGTRN
Disordered Region (DISPRO)
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKT*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLNGTRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q5EA97	463	Putative sodium-coupled n	yes	N/A	0.972	0.464	0.4	6e-40
Q3USY0	453	Putative sodium-coupled n	yes	N/A	0.932	0.454	0.412	9e-40
A8KBL5	448	Putative sodium-coupled n	yes	N/A	0.932	0.459	0.419	2e-39
Q08AI6	406	Putative sodium-coupled n	yes	N/A	0.932	0.507	0.393	6e-39
Q8HXI3	456	Putative sodium-coupled n	N/A	N/A	0.932	0.451	0.393	1e-38
P39981	480	Vacuolar amino acid trans	yes	N/A	0.882	0.406	0.346	4e-22
Q9H2H9	487	Sodium-coupled neutral am	no	N/A	0.886	0.402	0.336	5e-15
Q5R443	487	Sodium-coupled neutral am	no	N/A	0.904	0.410	0.308	1e-14
Q8IZM9	456	Probable sodium-coupled n	no	N/A	0.868	0.421	0.275	5e-13
Q28HE5	448	Probable sodium-coupled n	no	N/A	0.864	0.426	0.271	5e-13

>sp|Q5EA97|S38AB_BOVIN Putative sodium-coupled neutral amino acid transporter 11 OS=Bos taurus GN=SLC38A11 PE=2 SV=1

 Score =  164 bits (414), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 123/220 (55%), Gaps = 5/220 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AF+CHHN FL+Y S+E  +   W  + H+S  ++  +S+LF   GY TFTG  QGDL
Sbjct: 228 MSFAFICHHNCFLVYGSLEEPTVAKWSHIIHVSTLISVFISILFATCGYLTFTGYTQGDL 287

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
            ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V    + +   H+  T+ I+ 
Sbjct: 288 FENYCRNDDLVTFGRFCYGVTVILTYPIECFVTREVIANVFFGGNLSSVCHIIVTVVIIT 347

Query: 121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
           +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct: 348 VATLVSLLIDCLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 407

Query: 181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLNGTR 220
           +V  VG +  + + Q      C HG  M YC+    + T 
Sbjct: 408 VVMAVGFVMAVTSPQ-----DCSHGQEMFYCSPDNFSLTN 442

Putative sodium-dependent amino acid/proton antiporter.
Bos taurus (taxid: 9913)

>sp|Q3USY0|S38AB_MOUSE Putative sodium-coupled neutral amino acid transporter 11 OS=Mus musculus GN=Slc38a11 PE=2 SV=2

 Score =  163 bits (412), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 115/211 (54%), Gaps = 5/211 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AF+CHHN FL+Y S+E  +   W ++ H S+ V+  + +LF   GY TFTG  QGDL
Sbjct: 229 MSFAFICHHNCFLVYGSLEEPTVAKWRRIIHTSILVSVFICVLFATCGYFTFTGFTQGDL 288

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
            ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V      +   H    + IV 
Sbjct: 289 FENYCRSDDLVTFGRFCYGITVILTYPIECFVTREVIANVFFGGTLSSVFHTVLAVLIVT 348

Query: 121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
               +S+  +CLG+VLELNGVL A PL FI+P+  YLKL         K+ A  +   G 
Sbjct: 349 AATLVSLMIECLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMACVMFPVGA 408

Query: 181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
           +V  VG +  +   Q      C HG  M YC
Sbjct: 409 VVMVVGFVMAITNPQ-----DCTHGQEMFYC 434

Putative sodium-dependent amino acid/proton antiporter.

Mus musculus (taxid: 10090)

>sp|A8KBL5|S38AB_DANRE Putative sodium-coupled neutral amino acid transporter 11 OS=Danio rerio GN=slc38a11 PE=2 SV=2

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 6/212 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  A +CHHN F++Y S++  +   W  +THISV  + +VS +F  AGYATFT   QGD+
Sbjct: 215 MSFALICHHNSFMIYGSLQEPTLSRWSLVTHISVGSSVLVSAVFAAAGYATFTVYTQGDI 274

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVL-NAYHSTDKQHVGFTLAIV 119
            ENYC  D+L    R  +  +I+ T+P+EC VTR V+   L      +   HV  TL I+
Sbjct: 275 FENYCRSDNLATFGRFCYGVSIITTFPLECFVTREVISNALFKGGELSKSSHVIITLVII 334

Query: 120 LITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFG 179
             T  IS++ DCLG+VLELNG+L+AVPL FI P+  +LKL +      + L A  + + G
Sbjct: 335 SATTAISLSYDCLGIVLELNGILSAVPLMFIFPSACFLKLSNERWCRGENLIASMILVAG 394

Query: 180 VMVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
           V V  +GLI +    Q      C HG  M YC
Sbjct: 395 VFVMIIGLIMMALFPQ-----DCSHGAEMFYC 421

Putative sodium-dependent amino acid/proton antiporter.

Danio rerio (taxid: 7955)

>sp|Q08AI6|S38AB_HUMAN Putative sodium-coupled neutral amino acid transporter 11 OS=Homo sapiens GN=SLC38A11 PE=2 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 118/211 (55%), Gaps = 5/211 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AF+CHHN FL+Y S+E  +   W +L H+S+ ++  + + F   GY TFTG  QGDL
Sbjct: 171 MSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDL 230

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
            ENYC  DDL+   R  +  T++LTYP+EC VTR V+  V    + +   H+  T+ ++ 
Sbjct: 231 FENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVIT 290

Query: 121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
           +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct: 291 VATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 350

Query: 181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
           +V   G +  +   Q      C HG  M YC
Sbjct: 351 VVMVFGFVMAITNTQ-----DCTHGQEMFYC 376

Putative sodium-dependent amino acid/proton antiporter.

Homo sapiens (taxid: 9606)

>sp|Q8HXI3|S38AB_MACFA Putative sodium-coupled neutral amino acid transporter 11 OS=Macaca fascicularis GN=SLC38A11 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 117/211 (55%), Gaps = 5/211 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AF+CHHN FL+Y S+E  +   W +L H+S+ ++  + + F   GY TFTG  QGDL
Sbjct: 221 MSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDL 280

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
            ENYC  DDL+   R  +  T++LTYP+EC VTR V+  V    + +   H+  T+ ++ 
Sbjct: 281 FENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVIT 340

Query: 121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
           +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct: 341 VATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSYVMLPIGA 400

Query: 181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
            V   G +  +   Q      C HG  M YC
Sbjct: 401 AVMVFGFVMAITNPQ-----DCTHGQEMFYC 426

Putative sodium-dependent amino acid/proton antiporter.

Macaca fascicularis (taxid: 9541)

>sp|P39981|AVT2_YEAST Vacuolar amino acid transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT2 PE=2 SV=1

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 4   AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
           A +CHHN   ++ S+   S   + +LTHIS+ ++ +   L G +G+A F    +G++L +
Sbjct: 269 ALVCHHNTSFIFFSMRNRSVAKFTRLTHISIIISVICCALMGYSGFAVFKEKTKGNVLNS 328

Query: 64  YCWYDDLMNLARLAFSFTILLTYPIECLVTRSV---LLQVLNAYHSTD-------KQHVG 113
           +   D  +N+ARL F F +L T+P+E  V R V   LL   N   + D       KQHV 
Sbjct: 329 FPGTDTAINIARLCFGFNMLTTFPMEIFVLRDVVGNLLHECNLIKNYDEHTQLSGKQHVV 388

Query: 114 FTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPAL 173
            T ++V IT  IS+TT  LG + EL G   A  +A+ILP  + L L S     K++LP  
Sbjct: 389 ITSSLVFITMGISLTTCNLGALFELIGATTASTMAYILPPYTNLLLTSKKKSWKERLPFY 448

Query: 174 GLALFGVMVAFVGLIQILYAIQSGS 198
               FG M+  +   Q +    +GS
Sbjct: 449 LCICFGFMIMIISSTQTIIDAVNGS 473

Probable amino acid transporter of unknown specificity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9H2H9|S38A1_HUMAN Sodium-coupled neutral amino acid transporter 1 OS=Homo sapiens GN=SLC38A1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 4   AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
           AF+CH +V  +Y  ++  SQ     +++IS    FV+  L  I GY TF  NVQ DLL  
Sbjct: 285 AFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYDNVQSDLLHK 344

Query: 64  YCWYDDLMNLA-RLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFT----LAI 118
           Y   DD++ L  RLA    ++LT P+     RS L ++         +H   T    + I
Sbjct: 345 YQSKDDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKTKFNLCRHTVVTCILLVVI 404

Query: 119 VLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKL--ESGSIFSKQKLPALGLA 176
            L+  FI    D  GVV    GV +A  L FILP+  YLK+  + G   +++   AL L 
Sbjct: 405 NLLVIFIPSMKDIFGVV----GVTSANMLIFILPSSLYLKITDQDGDKGTQRIWAALFLG 460

Query: 177 LFGVMVAFVGLIQILYAIQSGSVSKCMH 204
           L GV+ + V +  ++Y     S S   H
Sbjct: 461 L-GVLFSLVSIPLVIYDWACSSSSDEGH 487

Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA.

Homo sapiens (taxid: 9606)

>sp|Q5R443|S38A1_PONAB Sodium-coupled neutral amino acid transporter 1 OS=Pongo abelii GN=SLC38A1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 4/204 (1%)

Query: 4   AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
           AF+CH +V  +Y  ++  SQ     +++IS    FV+  L  I GY TF  NVQ DLL  
Sbjct: 285 AFVCHPSVLPIYSELKDRSQKKMQMVSNISFFAMFVMYFLTAIFGYLTFYDNVQSDLLHK 344

Query: 64  YCWYDDLMNLA-RLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLIT 122
           Y   DD++ L  RLA    ++LT P+     RS L ++         +H   T  ++++ 
Sbjct: 345 YQGKDDILILTVRLAVIVAVILTVPVLFFTVRSSLFELAKKTKFNLCRHTVVTCILLVVI 404

Query: 123 YFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKL--ESGSIFSKQKLPALGLALFGV 180
             + I+   +  +  + GV +A  L FILP+  YLK+  + G   +++   AL L L GV
Sbjct: 405 NLLVISIPSMKDIFGVVGVTSANMLIFILPSSLYLKITDQDGDKGTQRIWAALFLGL-GV 463

Query: 181 MVAFVGLIQILYAIQSGSVSKCMH 204
           + + V +  ++Y     S S   H
Sbjct: 464 LFSLVSIPLVIYDWACSSSSDEGH 487

Functions as a sodium-dependent amino acid transporter. Mediates the saturable, pH-sensitive and electrogenic cotransport of glutamine and sodium ions with a stoichiometry of 1:1. May also transport small zwitterionic and aliphatic amino acids with a lower affinity. May supply glutamatergic and GABAergic neurons with glutamine which is required for the synthesis of the neurotransmitters glutamate and GABA.

Pongo abelii (taxid: 9601)

>sp|Q8IZM9|S38A6_HUMAN Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens GN=SLC38A6 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 4/196 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  +F+CH ++  +Y  ++  S+     +T+ ++A++F++  +  + GY TF   V+ +L
Sbjct: 256 MAFSFLCHTSILPIYCELQSPSKKRMQNVTNTAIALSFLIYFISALFGYLTFYDKVESEL 315

Query: 61  LENYCWY---DDLMNLARLAFSFTILLTYP-IECLVTRSVLLQVLNAYHSTDKQHVGFTL 116
           L+ Y  Y   D ++   +L   F +LLT P I     ++V +   + +  +  +H   TL
Sbjct: 316 LKGYSKYLSHDVVVMTVKLCILFAVLLTVPLIHFPARKAVTMMFFSNFPFSWIRHFLITL 375

Query: 117 AIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLA 176
           A+ +I   ++I    +  V  + G   +  L FI P L YLKL      S +KL A  L 
Sbjct: 376 ALNIIIVLLAIYVPDIRNVFGVVGASTSTCLIFIFPGLFYLKLSREDFLSWKKLGAFVLL 435

Query: 177 LFGVMVAFVGLIQILY 192
           +FG++V    L  I++
Sbjct: 436 IFGILVGNFSLALIIF 451

Probable sodium-dependent amino acid/proton antiporter.

Homo sapiens (taxid: 9606)

>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  +F+CH +V  +Y  ++  S+     + ++ +A++F++  +  + GY TF  NV+ +L
Sbjct: 250 MAFSFLCHTSVLPIYCELKSPSKSKMQNVANVGIALSFLIYYISALFGYLTFYDNVKSEL 309

Query: 61  LENYCWY---DDLMNLARLAFSFTILLTYP-IECLVTRSVLLQVLNAYHSTDKQHVGFTL 116
           L+ Y  Y   D L+   RL     +LLT P I     ++V++   + Y  +  +H+  TL
Sbjct: 310 LQGYSKYLPKDVLIITVRLCILLAVLLTVPLIHFPARKAVMMMFFSRYPFSYIRHILVTL 369

Query: 117 AIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLA 176
            + +I   ++I    +  V  + G   +  L F+ P L Y+KL      S QK  A GL 
Sbjct: 370 VLNIIIVLLAIYVPDMRSVFGVVGSTTSTCLLFVFPGLFYVKLGREDCSSPQKFGACGLL 429

Query: 177 LFGVMVAFVGLIQIL 191
           + G+ +    L  I+
Sbjct: 430 VLGICIGACSLTLII 444

Probable sodium-dependent amino acid/proton antiporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
383859508	467	PREDICTED: putative sodium-coupled neutr	0.990	0.468	0.557	1e-65
350409354	1249	PREDICTED: hypothetical protein LOC10074	0.918	0.162	0.572	6e-64
340713627	1246	PREDICTED: hypothetical protein LOC10064	0.918	0.162	0.572	6e-64
380011508	1259	PREDICTED: uncharacterized protein LOC10	0.918	0.161	0.567	1e-63
328793768	1240	PREDICTED: hypothetical protein LOC72763	0.918	0.163	0.562	2e-63
156537193	515	PREDICTED: putative sodium-coupled neutr	0.968	0.415	0.537	2e-63
332019971	390	Putative sodium-coupled neutral amino ac	0.977	0.553	0.551	6e-63
307170950	480	Putative sodium-coupled neutral amino ac	0.959	0.441	0.570	6e-63
270008827	477	hypothetical protein TcasGA2_TC015432 [T	0.963	0.446	0.566	7e-62
91084357	501	PREDICTED: similar to CG13743 CG13743-PA	0.918	0.405	0.583	6e-61

>gi|383859508|ref|XP_003705236.1| PREDICTED: putative sodium-coupled neutral amino acid transporter 11-like [Megachile rotundata]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/235 (55%), Positives = 162/235 (68%), Gaps = 16/235 (6%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+YESIE A+Q  WD +TH S+  +F+V+  FGI GYATFT  VQGDL
Sbjct: 230 MAFAFMCHHNTFLIYESIERATQQKWDVVTHWSLFTSFLVAAAFGIIGYATFTAYVQGDL 289

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLN---------AY-HSTDKQ 110
           +ENYCW DDLMN AR+ FS TILLT+PIEC VTR V+L  +          AY  ++D++
Sbjct: 290 MENYCWDDDLMNFARVMFSGTILLTFPIECFVTREVILTAIKGTDELEDHTAYVPNSDRK 349

Query: 111 HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKL 170
           ++  TL IV++ Y IS++TDCLGVVLELNG+LAAVPLA++LP L YLKLE G + S +KL
Sbjct: 350 YLIITLTIVIVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEEGPVLSPKKL 409

Query: 171 PALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYC----NKTQLNGTRN 221
           PALGL   GV  A  GL  +L  + S + S C+HG  MPYC    N T  N T  
Sbjct: 410 PALGLMTAGVFAAVSGL--LLLIVNSDTSSSCVHGKVMPYCIDNSNSTSFNATSK 462

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409354|ref|XP_003488706.1| PREDICTED: hypothetical protein LOC100745253 [Bombus impatiens]

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 123/215 (57%), Positives = 155/215 (72%), Gaps = 12/215 (5%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+YESIE A+Q  WD +TH S+  +FV++  FGI GYATFT  VQGDL
Sbjct: 226 MAFAFMCHHNTFLIYESIERATQQKWDIVTHWSLFTSFVIATAFGIIGYATFTAYVQGDL 285

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVL---------NAY-HSTDKQ 110
           +ENYCW DDLMN AR+ FS TILLT+PIEC VTR V+L  +          AY  ++D++
Sbjct: 286 MENYCWDDDLMNFARIMFSGTILLTFPIECFVTREVILTAIKGTDELEDHTAYVPNSDRK 345

Query: 111 HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKL 170
           ++  TL+IV++ Y IS++TDCLGVVLELNG+LAAVPLA++LP L YLKLE G I S +KL
Sbjct: 346 YLIITLSIVVVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEDGPILSSKKL 405

Query: 171 PALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHG 205
           PALGL   GV  A  GL  +L  + + + S C+HG
Sbjct: 406 PALGLMSAGVFAAVSGL--LLLILNNDTSSSCVHG 438

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713627|ref|XP_003395342.1| PREDICTED: hypothetical protein LOC100643568 [Bombus terrestris]

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 123/215 (57%), Positives = 155/215 (72%), Gaps = 12/215 (5%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+YESIE A+Q  WD +TH S+  +FV++  FGI GYATFT  VQGDL
Sbjct: 226 MAFAFMCHHNTFLIYESIERATQQKWDIVTHWSLFTSFVIATAFGIIGYATFTAYVQGDL 285

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVL---------NAY-HSTDKQ 110
           +ENYCW DDLMN AR+ FS TILLT+PIEC VTR V+L  +          AY  ++D++
Sbjct: 286 MENYCWDDDLMNFARIMFSGTILLTFPIECFVTREVILTAIKGTDELEDHTAYIPNSDRK 345

Query: 111 HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKL 170
           ++  TL+IV++ Y IS++TDCLGVVLELNG+LAAVPLA++LP L YLKLE G I S +KL
Sbjct: 346 YLIITLSIVVVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEDGPILSSKKL 405

Query: 171 PALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHG 205
           PALGL   GV  A  GL  +L  + + + S C+HG
Sbjct: 406 PALGLMSAGVFAAVSGL--LLLILNNDTSSSCVHG 438

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011508|ref|XP_003689844.1| PREDICTED: uncharacterized protein LOC100871400 [Apis florea]

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 122/215 (56%), Positives = 154/215 (71%), Gaps = 12/215 (5%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+YESIE A+Q  WD +TH S+  +F+++  FGI GYATFT  VQGDL
Sbjct: 244 MAFAFMCHHNTFLIYESIERATQQKWDIVTHWSLFTSFLIAAAFGIIGYATFTSYVQGDL 303

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVL---------NAY-HSTDKQ 110
           +ENYCW DDLMN ARL FS TILLT+PIEC VTR V+L  +          AY  ++D++
Sbjct: 304 MENYCWDDDLMNFARLMFSGTILLTFPIECFVTREVILTAIKGTDELEDHTAYVPNSDRK 363

Query: 111 HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKL 170
           ++  TL IV++ Y IS++TDCLGVVLELNG+LAAVPLA++LP L YLKLE GS+FS +KL
Sbjct: 364 YLIITLTIVVVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEEGSVFSSKKL 423

Query: 171 PALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHG 205
           PALGL   G+  A  GL  +L  +   +   C+HG
Sbjct: 424 PALGLMTAGMFAATSGL--LLLILNRDTSGSCVHG 456

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793768|ref|XP_003251927.1| PREDICTED: hypothetical protein LOC727639 [Apis mellifera]

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/215 (56%), Positives = 152/215 (70%), Gaps = 12/215 (5%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+YESIE A+Q  WD +TH S+  +F+++  FGI GY TFT  VQGDL
Sbjct: 226 MAFAFMCHHNTFLIYESIERATQQKWDIVTHWSLFTSFLIAAAFGIIGYTTFTSYVQGDL 285

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY-----HST-----DKQ 110
           +ENYCW DDLMN ARL FS TILLT+PIEC VTR V+L  +        H+T     D++
Sbjct: 286 MENYCWDDDLMNFARLMFSGTILLTFPIECFVTREVILTAIKGTDELENHTTYIPNSDRK 345

Query: 111 HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKL 170
           ++  TL IV++ Y IS++TDCLGVVLELNG+LAAVPLA++LP L YLKLE GS+FS +KL
Sbjct: 346 YLIITLTIVVVAYLISMSTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEEGSVFSSKKL 405

Query: 171 PALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHG 205
           PALGL   G+  A  GL  +L  +   +   C+HG
Sbjct: 406 PALGLMTAGMFAATSGL--LLLILNRDTSGSCVHG 438

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537193|ref|XP_001604633.1| PREDICTED: putative sodium-coupled neutral amino acid transporter 11-like [Nasonia vitripennis]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 165/229 (72%), Gaps = 15/229 (6%)

Query: 4   AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
           AFMCHHN FL+Y SIE A+Q  WD +TH S+  +F+++  FGIAGYATFTG VQGDL+EN
Sbjct: 236 AFMCHHNTFLIYGSIERATQEKWDVVTHWSLFTSFLIAAAFGIAGYATFTGYVQGDLMEN 295

Query: 64  YCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVL---------NAY-HSTDKQHVG 113
           YCW DDLMN +R+ FS TILLT+PIEC VTR V++  +         +AY   +D++++ 
Sbjct: 296 YCWDDDLMNFSRIMFSGTILLTFPIECFVTREVIMTAIRGTDEVENHDAYIAGSDRKYLI 355

Query: 114 FTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPAL 173
            T+AI+ + Y IS++TDCLG+VLELNG+LAAVPLA++LPAL YLKLE GS+ S++KLPAL
Sbjct: 356 ITMAIISVAYLISMSTDCLGIVLELNGILAAVPLAYVLPALCYLKLEEGSLLSQKKLPAL 415

Query: 174 GLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYC---NKTQLNGT 219
            L + GV  A  GL+ +++   + S + C+HG  M YC   N T +  T
Sbjct: 416 ALLVAGVFAAVSGLLLLIF--NNTSAASCVHGQIMSYCQSPNSTDVTST 462

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019971|gb|EGI60431.1| Putative sodium-coupled neutral amino acid transporter 11 [Acromyrmex echinatior]

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 161/234 (68%), Gaps = 18/234 (7%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+Y SIE A+Q  WD +TH S+  +F+++  FGIAGYATFT  VQGDL
Sbjct: 146 MAFAFMCHHNTFLIYSSIERATQEKWDIVTHWSLFTSFLIAAAFGIAGYATFTSYVQGDL 205

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLN---------AY-HSTDKQ 110
           +ENYCW DDLMN AR+ FS TILLT+PIEC VTR VL+  +          AY  ++D++
Sbjct: 206 MENYCWDDDLMNFARVLFSGTILLTFPIECFVTREVLMTAIKGTDELEGHEAYIPNSDRE 265

Query: 111 HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKL 170
           ++  TL I+ + Y IS+ TDCLG+VLELNG+LAAVPLA+ILP L YLKLE G + S +KL
Sbjct: 266 YLIITLTIICMAYLISMLTDCLGIVLELNGILAAVPLAYILPGLCYLKLEEGPVLSSKKL 325

Query: 171 PALGLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYC--NKT---QLNGT 219
           PALGL   G++ A  GL+ I+    SG+   C HG  MPYC  N T    LN T
Sbjct: 326 PALGLMTAGILAALSGLLLIITNTCSGT---CFHGKVMPYCVDNSTTTLHLNAT 376

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170950|gb|EFN63042.1| Putative sodium-coupled neutral amino acid transporter 11 [Camponotus floridanus]

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 155/226 (68%), Gaps = 14/226 (6%)

Query: 4   AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
           AFMCHHN FL+Y SIE A+Q  WD +TH S+  +F+++  FGI GYATFT  VQGDL+EN
Sbjct: 237 AFMCHHNTFLIYGSIERATQQKWDVVTHWSLFTSFLIAATFGIVGYATFTSYVQGDLMEN 296

Query: 64  YCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLN---------AY-HSTDKQHVG 113
           YCW DDLMN AR+ FS TILLT+PIEC VTR VLL  +          AY  ++D++++ 
Sbjct: 297 YCWDDDLMNFARVMFSDTILLTFPIECFVTREVLLTAIKGTDELEGHEAYVPNSDRKYLI 356

Query: 114 FTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPAL 173
            TL IV   Y IS+ TDCLGVVLELNG+LAAVPLA++LP L YLKLE G I S +KLPAL
Sbjct: 357 ITLTIVSAAYLISMLTDCLGVVLELNGILAAVPLAYVLPGLCYLKLEEGPILSPKKLPAL 416

Query: 174 GLALFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYC--NKTQLN 217
           GL   G++ A  GL  +L  I S S   C HG  MPYC  N T L 
Sbjct: 417 GLMTAGILAAVSGL--LLLIINSSSAGSCFHGKIMPYCINNTTMLQ 460

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008827|gb|EFA05275.1| hypothetical protein TcasGA2_TC015432 [Tribolium castaneum]

 Score =  242 bits (618), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 157/219 (71%), Gaps = 6/219 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+Y SIE A++  W+ +THIS+  + +V+LLFGIAGY TFT   QGDL
Sbjct: 244 MAFAFMCHHNTFLIYGSIENANEKRWEIVTHISLLTSLIVALLFGIAGYTTFTAYSQGDL 303

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVL----LQVLNAYHSTDKQHVGFTL 116
           LENYCW DDLMN +RL FS  ILLTYPIEC VTR V+    L+       +++ H   TL
Sbjct: 304 LENYCWTDDLMNFSRLLFSIQILLTYPIECFVTREVITSSFLRNDPNVPISERTHYLITL 363

Query: 117 AIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLA 176
           AIV  TYFISI+TDCLGVVLELNGVLAAVPLA+ILPALSYL+LE G + S +K+PAL + 
Sbjct: 364 AIVGTTYFISISTDCLGVVLELNGVLAAVPLAYILPALSYLQLEEGHVLSSRKVPALAIV 423

Query: 177 LFGVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQ 215
           LFG+ VA +G++ ++  +    +  C HG  + +  K+Q
Sbjct: 424 LFGLTVAVLGVVFLI--LDFNEIDTCSHGKRIEHGIKSQ 460

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084357|ref|XP_973230.1| PREDICTED: similar to CG13743 CG13743-PA [Tribolium castaneum]

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 122/209 (58%), Positives = 152/209 (72%), Gaps = 6/209 (2%)

Query: 1   MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
           M  AFMCHHN FL+Y SIE A++  W+ +THIS+  + +V+LLFGIAGY TFT   QGDL
Sbjct: 244 MAFAFMCHHNTFLIYGSIENANEKRWEIVTHISLLTSLIVALLFGIAGYTTFTAYSQGDL 303

Query: 61  LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVL----LQVLNAYHSTDKQHVGFTL 116
           LENYCW DDLMN +RL FS  ILLTYPIEC VTR V+    L+       +++ H   TL
Sbjct: 304 LENYCWTDDLMNFSRLLFSIQILLTYPIECFVTREVITSSFLRNDPNVPISERTHYLITL 363

Query: 117 AIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLA 176
           AIV  TYFISI+TDCLGVVLELNGVLAAVPLA+ILPALSYL+LE G + S +K+PAL + 
Sbjct: 364 AIVGTTYFISISTDCLGVVLELNGVLAAVPLAYILPALSYLQLEEGHVLSSRKVPALAIV 423

Query: 177 LFGVMVAFVGLIQILYAIQSGSVSKCMHG 205
           LFG+ VA +G++ ++  +    +  C HG
Sbjct: 424 LFGLTVAVLGVVFLI--LDFNEIDTCSHG 450

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
FB|FBgn0033368	528	CG13743 [Drosophila melanogast	0.457	0.191	0.564	3.7e-53
UNIPROTKB|F1RPN3	457	SLC38A11 "Uncharacterized prot	0.932	0.450	0.417	7.3e-43
UNIPROTKB|I3LVG3	463	SLC38A11 "Uncharacterized prot	0.932	0.444	0.417	7.3e-43
UNIPROTKB|F1MMH7	463	SLC38A11 "Putative sodium-coup	0.936	0.447	0.410	5.2e-42
UNIPROTKB|Q5EA97	463	SLC38A11 "Putative sodium-coup	0.936	0.447	0.410	5.2e-42
UNIPROTKB|B8ZZ86	437	SLC38A11 "Uncharacterized prot	0.932	0.471	0.393	7.5e-41
UNIPROTKB|Q08AI6	406	SLC38A11 "Putative sodium-coup	0.932	0.507	0.393	7.5e-41
UNIPROTKB|F1PPZ0	446	SLC38A11 "Uncharacterized prot	0.932	0.461	0.412	2e-40
UNIPROTKB|F1NMG5	426	SLC38A11 "Uncharacterized prot	0.923	0.478	0.408	2.6e-40
ZFIN|ZDB-GENE-050417-122	448	slc38a11 "solute carrier famil	0.968	0.477	0.413	6.8e-40

FB|FBgn0033368 CG13743 [Drosophila melanogaster (taxid:7227)]

 Score = 328 (120.5 bits), Expect = 3.7e-53, Sum P(2) = 3.7e-53
 Identities = 57/101 (56%), Positives = 78/101 (77%)

Query:     4 AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLEN 63
             AFMCHHN FL+Y+S+  A+   W+K+THIS+  A+ V+ LFGIAGY+TF    QGDLLEN
Sbjct:   293 AFMCHHNTFLVYQSMRDATMERWEKVTHISIGFAWTVAALFGIAGYSTFRALSQGDLLEN 352

Query:    64 YCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY 104
             YCW DDLMN +R+ FS +ILLT+PIEC V+R ++  +++ +
Sbjct:   353 YCWDDDLMNFSRVLFSISILLTFPIECFVSREIVRALVHRF 393

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

UNIPROTKB|F1RPN3 SLC38A11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 88/211 (41%), Positives = 122/211 (57%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W  + H+S +++  +S+LF   GY TFTG  QGDL
Sbjct:   222 MSFAFICHHNCFLVYGSLEEPTVTKWSHIIHVSTSISVFISILFATCGYLTFTGFTQGDL 281

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V  + + +   H+  T+AI+ 
Sbjct:   282 FENYCRNDDLVTFGRFCYGITVILTYPIECFVTREVIANVFFSGNLSSVLHIIITVAIIT 341

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   342 VATLVSLLVDCLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 401

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
             +V  VG +  +   Q      C HG  M YC
Sbjct:   402 VVMVVGFVMAITNPQD-----CTHGQEMFYC 427

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LVG3 SLC38A11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 88/211 (41%), Positives = 122/211 (57%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W  + H+S +++  +S+LF   GY TFTG  QGDL
Sbjct:   228 MSFAFICHHNCFLVYGSLEEPTVTKWSHIIHVSTSISVFISILFATCGYLTFTGFTQGDL 287

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V  + + +   H+  T+AI+ 
Sbjct:   288 FENYCRNDDLVTFGRFCYGITVILTYPIECFVTREVIANVFFSGNLSSVLHIIITVAIIT 347

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   348 VATLVSLLVDCLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 407

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
             +V  VG +  +   Q      C HG  M YC
Sbjct:   408 VVMVVGFVMAITNPQD-----CTHGQEMFYC 433

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MMH7 SLC38A11 "Putative sodium-coupled neutral amino acid transporter 11" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 87/212 (41%), Positives = 121/212 (57%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W  + H+S  ++  +S+LF   GY TFTG  QGDL
Sbjct:   228 MSFAFICHHNCFLVYGSLEEPTVAKWSHIIHVSTLISVFISILFATCGYLTFTGYTQGDL 287

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V    + +   H+  T+ I+ 
Sbjct:   288 FENYCRNDDLVTFGRFCYGVTVILTYPIECFVTREVIANVFFGGNLSSVCHIIVTVVIIT 347

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   348 VATLVSLLIDCLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 407

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYCN 212
             +V  VG +  + + Q      C HG  M YC+
Sbjct:   408 VVMAVGFVMAVTSPQD-----CSHGQEMFYCS 434

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5EA97 SLC38A11 "Putative sodium-coupled neutral amino acid transporter 11" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 87/212 (41%), Positives = 121/212 (57%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W  + H+S  ++  +S+LF   GY TFTG  QGDL
Sbjct:   228 MSFAFICHHNCFLVYGSLEEPTVAKWSHIIHVSTLISVFISILFATCGYLTFTGYTQGDL 287

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V    + +   H+  T+ I+ 
Sbjct:   288 FENYCRNDDLVTFGRFCYGVTVILTYPIECFVTREVIANVFFGGNLSSVCHIIVTVVIIT 347

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   348 VATLVSLLIDCLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 407

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYCN 212
             +V  VG +  + + Q      C HG  M YC+
Sbjct:   408 VVMAVGFVMAVTSPQD-----CSHGQEMFYCS 434

GO:0016021 "integral to membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

UNIPROTKB|B8ZZ86 SLC38A11 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 83/211 (39%), Positives = 118/211 (55%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W +L H+S+ ++  + + F   GY TFTG  QGDL
Sbjct:   202 MSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDL 261

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYP+EC VTR V+  V    + +   H+  T+ ++ 
Sbjct:   262 FENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVIT 321

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   322 VATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 381

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
             +V   G +  +   Q      C HG  M YC
Sbjct:   382 VVMVFGFVMAITNTQD-----CTHGQEMFYC 407

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q08AI6 SLC38A11 "Putative sodium-coupled neutral amino acid transporter 11" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 83/211 (39%), Positives = 118/211 (55%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W +L H+S+ ++  + + F   GY TFTG  QGDL
Sbjct:   171 MSFAFICHHNSFLVYSSLEEPTVAKWSRLIHMSIVISVFICIFFATCGYLTFTGFTQGDL 230

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYP+EC VTR V+  V    + +   H+  T+ ++ 
Sbjct:   231 FENYCRNDDLVTFGRFCYGVTVILTYPMECFVTREVIANVFFGGNLSSVFHIVVTVMVIT 290

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG+VLELNGVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   291 VATLVSLLIDCLGIVLELNGVLCATPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPIGA 350

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
             +V   G +  +   Q      C HG  M YC
Sbjct:   351 VVMVFGFVMAITNTQD-----CTHGQEMFYC 376

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PPZ0 SLC38A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 87/211 (41%), Positives = 118/211 (55%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S+E  +   W ++ H+S   +  +S+LF   GY TFTG  QGDL
Sbjct:   212 MSFAFICHHNCFLVYGSLEDPTVAKWSRIIHVSTLASVFISILFAACGYLTFTGFTQGDL 271

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVL 120
              ENYC  DDL+   R  +  T++LTYPIEC VTR V+  V    +     H+  T+AI+ 
Sbjct:   272 FENYCRNDDLVTFGRFCYGVTVILTYPIECFVTREVIANVFFGGNLPLVFHIIITVAIIT 331

Query:   121 ITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGV 180
             +   +S+  DCLG VLEL+GVL A PL FI+P+  YLKL         K+ +  +   G 
Sbjct:   332 VAMLMSLLIDCLGRVLELSGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMSCVMLPVGA 391

Query:   181 MVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
             MV   G++  +   Q      C HG  M YC
Sbjct:   392 MVMVAGVVMAITNPQD-----CTHGQEMFYC 417

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NMG5 SLC38A11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 87/213 (40%), Positives = 125/213 (58%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  AF+CHHN FL+Y S++  +   W ++TH+SV +A V+S+LF   GY TFTG  +GD+
Sbjct:   215 MSFAFICHHNSFLIYGSLKEPTLNNWSRITHMSVLLAVVISVLFAACGYMTFTGYTEGDI 274

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQ--HVGFTLAI 118
              ENYC  D+L    R  +  T++LT+P+EC VTR V+  V   +H +     H+  T+ I
Sbjct:   275 FENYCRDDNLATFGRFCYGVTVILTFPLECFVTREVIANVF--FHGSLSAVFHIVVTVII 332

Query:   119 VLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALF 178
             + +   +S+  DCLG+VLELNGVL+A PL FI+P   YL+L         KL +  +   
Sbjct:   333 IAVATGVSLVYDCLGIVLELNGVLSATPLVFIIPTACYLRLSEERWNHSDKLISCLILAV 392

Query:   179 GVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYC 211
             GV+V  VG +  +   Q     +C HG  M YC
Sbjct:   393 GVLVMTVGFVLTILHPQ-----ECSHGKEMFYC 420

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050417-122 slc38a11 "solute carrier family 38, member 11" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 91/220 (41%), Positives = 126/220 (57%)

Query:     1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDL 60
             M  A +CHHN F++Y S++  +   W  +THISV  + +VS +F  AGYATFT   QGD+
Sbjct:   215 MSFALICHHNSFMIYGSLQEPTLSRWSLVTHISVGSSVLVSAVFAAAGYATFTVYTQGDI 274

Query:    61 LENYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQ-HVGFTLAIV 119
              ENYC  D+L    R  +  +I+ T+P+EC VTR V+   L       K  HV  TL I+
Sbjct:   275 FENYCRSDNLATFGRFCYGVSIITTFPLECFVTREVISNALFKGGELSKSSHVIITLVII 334

Query:   120 LITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFG 179
               T  IS++ DCLG+VLELNG+L+AVPL FI P+  +LKL +      + L A  + + G
Sbjct:   335 SATTAISLSYDCLGIVLELNGILSAVPLMFIFPSACFLKLSNERWCRGENLIASMILVAG 394

Query:   180 VMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQLNGT 219
             V V  +GLI +    Q      C HG  M YC+ +  + T
Sbjct:   395 VFVMIIGLIMMALFPQD-----CSHGAEMFYCSASNTSST 429

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	221
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	9e-23

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 94.3 bits (235), Expect = 9e-23
 Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 13/201 (6%)

Query: 4   AFMCHHNVFLLYESIEGASQFVWD-KLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLE 62
           AF  H  +  +  +++  S+F    K+   ++ +  V+ +L G+ GY  F  NV+G++L 
Sbjct: 205 AFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILL 264

Query: 63  NYCWYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDK-------QHVGFT 115
           N    D L+++A L     +LL+YP++    R ++  +L    ++ K         V   
Sbjct: 265 NLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIR 324

Query: 116 LAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLP---- 171
             +V+ITY I+I+   LG  L L G  +  PL FILP L +LKL+     S +KL     
Sbjct: 325 SGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDI 384

Query: 172 -ALGLALFGVMVAFVGLIQIL 191
             +   + G+++   G+  ++
Sbjct: 385 LDVICIVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1304|consensus	449		100.0
KOG1305|consensus	411		99.97
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.97
PLN03074	473	auxin influx permease; Provisional	99.96
KOG1303|consensus	437		99.96
KOG4303|consensus	524		99.91
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.6
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.05
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.77
PRK10483	414	tryptophan permease; Provisional	98.66
PRK15132	403	tyrosine transporter TyrP; Provisional	98.6
PRK09664	415	tryptophan permease TnaB; Provisional	98.46
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.25
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.1
PRK10644	445	arginine:agmatin antiporter; Provisional	97.48
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.36
PRK11021	410	putative transporter; Provisional	97.27
PRK10655	438	potE putrescine transporter; Provisional	97.26
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.16
TIGR00909	429	2A0306 amino acid transporter.	97.03
KOG1287|consensus	479		97.02
PRK10746	461	putative transport protein YifK; Provisional	97.0
PRK11387	471	S-methylmethionine transporter; Provisional	96.96
PRK10197	446	gamma-aminobutyrate transporter; Provisional	96.92
PRK10836	489	lysine transporter; Provisional	96.86
TIGR00913	478	2A0310 amino acid permease (yeast).	96.74
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	96.74
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	96.73
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	96.71
TIGR00911	501	2A0308 L-type amino acid transporter.	96.67
PRK15049	499	L-asparagine permease; Provisional	96.65
PRK10249	458	phenylalanine transporter; Provisional	96.63
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	96.59
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	96.44
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	96.43
TIGR00907	482	2A0304 amino acid permease (GABA permease).	96.38
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	96.36
PRK10238	456	aromatic amino acid transporter; Provisional	96.35
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	96.35
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.11
TIGR00906	557	2A0303 cationic amino acid transport permease.	95.99
PRK10580	457	proY putative proline-specific permease; Provision	95.85
TIGR00930	953	2a30 K-Cl cotransporter.	95.75
PRK15238	496	inner membrane transporter YjeM; Provisional	95.63
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	95.41
TIGR00912	359	2A0309 spore germination protein (amino acid perme	94.61
KOG1286|consensus	554		91.65
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	91.18
PRK00701	439	manganese transport protein MntH; Reviewed	88.66
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	84.3
COG1457	442	CodB Purine-cytosine permease and related proteins	84.19

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.6e-35  Score=267.51  Aligned_cols=196  Identities=16%  Similarity=0.251  Sum_probs=173.3

Q ss_pred             CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCc-CCCChHHHHHHHHHH
Q psy14877          1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENY-CWYDDLMNLARLAFS   79 (221)
Q Consensus         1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~   79 (221)
                      ++|||.||.+++++++|||||+++|+.+++..++.+++++|..+|++||+.|||++++++++|+ |.+|+...++++++.
T Consensus       265 ~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~  344 (467)
T PTZ00206        265 FIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVL  344 (467)
T ss_pred             HHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999999999999999999 456788999999999


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHhccc--CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhh
Q psy14877         80 FTILLTYPIECLVTRSVLLQVLNAY--HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYL  157 (221)
Q Consensus        80 i~~~~s~pl~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl  157 (221)
                      +.++++||++.+|+|+.+++.+..+  +.+++++...+..++.++.++|+.+|+++.+++++||++++.++|++|+++|+
T Consensus       345 ~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l  424 (467)
T PTZ00206        345 VKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM  424 (467)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999987433  33445666667777778889999999999999999999999999999999999


Q ss_pred             hhc---cCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy14877        158 KLE---SGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQS  196 (221)
Q Consensus       158 ~~~---~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~  196 (221)
                      +..   +++..+++.+.+++++++|++..+.|||+++++.+.
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~~  466 (467)
T PTZ00206        425 YSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVTV  466 (467)
T ss_pred             hcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHhc
Confidence            842   223333455789999999999999999999998763

>KOG1304|consensus

Probab=100.00  E-value=3.5e-35  Score=258.30  Aligned_cols=190  Identities=21%  Similarity=0.323  Sum_probs=177.2

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHH---HHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWD---KLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAF   78 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~---~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~   78 (221)
                      +|||.++.++.|++++||+|+  +|.   ++++.++.+++++|..+|++||++|||++++.|++|+|+ +++.+.+|+++
T Consensus       251 ifafEGig~VLPlEn~Mk~P~--~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~  327 (449)
T KOG1304|consen  251 IFAFEGIGMVLPLENSMKKPQ--KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLL  327 (449)
T ss_pred             HHHhccceEEEehhhcccChh--hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHH
Confidence            589999999999999999999  888   999999999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHhccc---CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhH
Q psy14877         79 SFTILLTYPIECLVTRSVLLQVLNAY---HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALS  155 (221)
Q Consensus        79 ~i~~~~s~pl~~~p~~~~~~~~l~~~---~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~  155 (221)
                      ++.+.+|||+|++|..+++|+.+.++   +..++..+.+|..+++++..+|..+|+++.+++++||++++.+++++|+++
T Consensus       328 ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~li  407 (449)
T KOG1304|consen  328 AIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLI  407 (449)
T ss_pred             HHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHH
Confidence            99999999999999999999987765   224566788999999999999999999999999999999999999999999


Q ss_pred             hhhhccCC---cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877        156 YLKLESGS---IFSKQKLPALGLALFGVMVAFVGLIQILYAI  194 (221)
Q Consensus       156 yl~~~~~~---~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~  194 (221)
                      +++..+++   ..+|+.+.+.+++++|++.++.|||+++.++
T Consensus       408 el~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  408 ELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            99986543   4568899999999999999999999999874

>KOG1305|consensus

Probab=99.97  E-value=5.9e-31  Score=232.71  Aligned_cols=195  Identities=31%  Similarity=0.542  Sum_probs=182.6

Q ss_pred             CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChH------HHHH
Q psy14877          1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDL------MNLA   74 (221)
Q Consensus         1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~~~   74 (221)
                      ++|||.||+|+.|+++|||||++++++++...+...+.++|..+|.+||+.|||++++|++.++|+++..      ...+
T Consensus       203 ~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~v  282 (411)
T KOG1305|consen  203 FVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCV  282 (411)
T ss_pred             hheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999999975433      4789


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhccc-----CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHH
Q psy14877         75 RLAFSFTILLTYPIECLVTRSVLLQVLNAY-----HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAF  149 (221)
Q Consensus        75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-----~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~f  149 (221)
                      |..+.++++.++|++.+|+|..+++.+.++     +.++.|+++++..++..+.+.|+.+|+++.+++++||+++..++|
T Consensus       283 r~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~F  362 (411)
T KOG1305|consen  283 RLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISF  362 (411)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHH
Confidence            999999999999999999999999988876     267899999999999999999999999999999999999999999


Q ss_pred             hhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy14877        150 ILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQSG  197 (221)
Q Consensus       150 i~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~~  197 (221)
                      ++|+++|++..|+  ..+++...++..++|+...+.|+...+.++..+
T Consensus       363 I~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  363 ILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999877  557888999999999999999999999999874

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.97  E-value=1.1e-32  Score=244.04  Aligned_cols=191  Identities=31%  Similarity=0.465  Sum_probs=172.7

Q ss_pred             CeEEeechhhHHHHHHHhhccch-HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHH
Q psy14877          1 MDGAFMCHHNVFLLYESIEGASQ-FVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFS   79 (221)
Q Consensus         1 i~Faf~~h~~v~~i~~~m~~p~~-~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~   79 (221)
                      ++|||.||++++++++|||+|++ +|+.++...++.+++++|..+|++||++|||++++|+++|+|++++...++++++.
T Consensus       201 ~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~  280 (409)
T PF01490_consen  201 IIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLV  280 (409)
T ss_pred             hhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccch
Confidence            47899999999999999999996 56669999999999999999999999999999999999999987789999999999


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHhccc-----------CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHH
Q psy14877         80 FTILLTYPIECLVTRSVLLQVLNAY-----------HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLA  148 (221)
Q Consensus        80 i~~~~s~pl~~~p~~~~~~~~l~~~-----------~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~  148 (221)
                      ++++.+||++.+|.|+.+++.+.+.           +.++++|...|+.++.+++++|+.+|+++++++++||++++.++
T Consensus       281 i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~  360 (409)
T PF01490_consen  281 ISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFIS  360 (409)
T ss_pred             hhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHH
Confidence            9999999999999999999998751           23467789999999999999999999999999999999999999


Q ss_pred             HhhhhhHhhhhccCCcccch-----hhhHHHHHHHHHHHHHHHHHHHH
Q psy14877        149 FILPALSYLKLESGSIFSKQ-----KLPALGLALFGVMVAFVGLIQIL  191 (221)
Q Consensus       149 fi~P~l~yl~~~~~~~~~~~-----~i~~~~i~~~Gv~~~v~g~~~~i  191 (221)
                      |++|+++|+|.++++..+++     ....++++++|++.++.|+|+++
T Consensus       361 fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  361 FILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             HHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            99999999998776433222     24578889999999999999886

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=99.96  E-value=1.8e-29  Score=227.94  Aligned_cols=211  Identities=11%  Similarity=0.053  Sum_probs=174.3

Q ss_pred             CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch--hhhcCcCCCChHHHHHHHHH
Q psy14877          1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQG--DLLENYCWYDDLMNLARLAF   78 (221)
Q Consensus         1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~   78 (221)
                      ++|||.+|..+|++++|||||+  +|++++..+.+.+++.|..+|+.||+.|||++++  +.+.|+|+ +.+.+++++++
T Consensus       242 i~faf~g~~v~~~I~~~M~~P~--~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~-~~~~~~~~~~~  318 (473)
T PLN03074        242 ILYTFGGHAVTVEIMHAMWKPQ--KFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR-SGWRDAAVILM  318 (473)
T ss_pred             HHHHhcccccHHHHHHhccChh--cccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC-chHHHHHHHHH
Confidence            3689999999999999999998  8999989999999999999999999999999754  56777885 45678999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHhccc-CCCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhh
Q psy14877         79 SFTILLTYPIECLVTRSVLLQVLNAY-HSTDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYL  157 (221)
Q Consensus        79 ~i~~~~s~pl~~~p~~~~~~~~l~~~-~~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl  157 (221)
                      .++++.+||++..|.-+.+|+.+..+ ......|.++|+.+++.++++|..+|+++++++++||++++.++|++|+++|+
T Consensus       319 ~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l  398 (473)
T PLN03074        319 LIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHM  398 (473)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987543 22345578899999999999999999999999999999999999999999999


Q ss_pred             hhccCC-------------cccc--hhhhHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcccccc
Q psy14877        158 KLESGS-------------IFSK--QKLPALGLALF-GVMVAFVGLIQILYAIQSGSVSKCMHGLAMPYCNKTQ  215 (221)
Q Consensus       158 ~~~~~~-------------~~~~--~~i~~~~i~~~-Gv~~~v~g~~~~i~~~~~~~~~~~~~~~~~~~c~~~~  215 (221)
                      +.++++             ..+|  ..+.+++++++ |++..+.|+|.++.++++...+ ...-.+-+.|.+++
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~-~~~f~~~~~c~~~~  471 (473)
T PLN03074        399 LTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT-FGLFAKCYQCPPPS  471 (473)
T ss_pred             HHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh-hhhhhhhccCCCCC
Confidence            854321             1122  35788888875 6666789999999999985543 12233346776543

>KOG1303|consensus

Probab=99.96  E-value=6.3e-28  Score=214.58  Aligned_cols=194  Identities=20%  Similarity=0.266  Sum_probs=173.2

Q ss_pred             CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHH
Q psy14877          1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSF   80 (221)
Q Consensus         1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i   80 (221)
                      ++|+|.+|..+|+||++||+|+  +|++++..++.+++.+|..+++.||++|||+++++++.|++++.++...++++..+
T Consensus       237 iaFaf~gH~v~peIq~tMk~p~--~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~  314 (437)
T KOG1303|consen  237 IAFAYGGHAVLPEIQHTMKSPP--KFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVL  314 (437)
T ss_pred             eeeeecCCeeeeehHhhcCCch--hhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHH
Confidence            5899999999999999999999  79999999999999999999999999999999999999996446899999999999


Q ss_pred             HHHhhhhhhhhHHHHHHHHHhcccCC-----CCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhH
Q psy14877         81 TILLTYPIECLVTRSVLLQVLNAYHS-----TDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALS  155 (221)
Q Consensus        81 ~~~~s~pl~~~p~~~~~~~~l~~~~~-----~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~  155 (221)
                      |++.++.....|.-+.+|+....++.     ....|.+.|..+++.+.++|+.+|.++++.+++||+...++++++|+++
T Consensus       315 h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~  394 (437)
T KOG1303|consen  315 HLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLM  394 (437)
T ss_pred             HHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998875422     3347899999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCcccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHc
Q psy14877        156 YLKLESGSIFSKQKLPALGL-ALFGVMVAFVGLIQILYAIQS  196 (221)
Q Consensus       156 yl~~~~~~~~~~~~i~~~~i-~~~Gv~~~v~g~~~~i~~~~~  196 (221)
                      |++.++.++...++...+.+ .++|++.++.....++++++.
T Consensus       395 yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  395 YLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             HHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99986654444555666666 688888888888888877754

>KOG4303|consensus

Probab=99.91  E-value=3.1e-26  Score=193.59  Aligned_cols=193  Identities=19%  Similarity=0.252  Sum_probs=177.0

Q ss_pred             CeEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHH
Q psy14877          1 MDGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSF   80 (221)
Q Consensus         1 i~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i   80 (221)
                      |+|+|+.|..+|....+|++|+  +|.-.+.++-+...++-..+|..||++|+|.++..|.+|+|. +.+...+++++.+
T Consensus       311 iVFsYTSqIFLP~LEGNM~~ps--~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~  387 (524)
T KOG4303|consen  311 IVFSYTSQIFLPNLEGNMKNPS--QFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVV  387 (524)
T ss_pred             EEEeeeceeeccccccccCChh--HheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHH
Confidence            5899999999999999999999  788899999999999999999999999999999999999984 6788899999999


Q ss_pred             HHHhhhhhhhhHHHHHHHHHhccc----C-------CCCch--hhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhH
Q psy14877         81 TILLTYPIECLVTRSVLLQVLNAY----H-------STDKQ--HVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPL  147 (221)
Q Consensus        81 ~~~~s~pl~~~p~~~~~~~~l~~~----~-------~~~~~--~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l  147 (221)
                      ..++|||+..+.+.+.+|+-++.+    +       ....+  -+.+|++++..+.+.|+.+|.+..+++++|++.+..+
T Consensus       388 KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmL  467 (524)
T KOG4303|consen  388 KALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTML  467 (524)
T ss_pred             HHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccH
Confidence            999999999999999999988765    1       11122  3557999999999999999999999999999999999


Q ss_pred             HHhhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy14877        148 AFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQILYAIQS  196 (221)
Q Consensus       148 ~fi~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i~~~~~  196 (221)
                      +|+.|++||++++++.+...++..+..++++|+...+.|.|.+..++++
T Consensus       468 sFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~  516 (524)
T KOG4303|consen  468 SFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIR  516 (524)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHH
Confidence            9999999999999888777788999999999999999999999999988

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.60  E-value=3.4e-14  Score=126.90  Aligned_cols=189  Identities=18%  Similarity=0.178  Sum_probs=140.6

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcCcCCCChHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGDLLENYCWYDDLMNLARLAFSFT   81 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~   81 (221)
                      +|||.||++++++++||+++++++.+++...+..+..++|..+++++|..+|+.+.++++++++++ ......+......
T Consensus       203 vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~-~~~l~~~~~~~~~  281 (415)
T COG0814         203 VFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQN-ISLLSALAGVINS  281 (415)
T ss_pred             HhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCch-HHHHHHHHHhhcc
Confidence            689999999999999999999766999999999999999999999999999999999999999864 3333344444444


Q ss_pred             HHhhhhhhhhHHHHHHHH--------------Hhccc--C---C-CC-chhhhHHHHHHHHHHHHHHhccchHHHHHHhh
Q psy14877         82 ILLTYPIECLVTRSVLLQ--------------VLNAY--H---S-TD-KQHVGFTLAIVLITYFISITTDCLGVVLELNG  140 (221)
Q Consensus        82 ~~~s~pl~~~p~~~~~~~--------------~l~~~--~---~-~~-~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~G  140 (221)
                      ...++|.+.++.......              .+.++  +   . .+ ..+....+.++......+...|+.+.+++.+|
T Consensus       282 ~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ig  361 (415)
T COG0814         282 PILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIG  361 (415)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            446666666665544333              22211  0   0 11 12233455556666677888999999999999


Q ss_pred             hhhhhhHHHhhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy14877        141 VLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQIL  191 (221)
Q Consensus       141 a~~~~~l~fi~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~~i  191 (221)
                      +...+.+.++.|...+.|....+..+.++...++++++|+..+....+...
T Consensus       362 a~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~  412 (415)
T COG0814         362 APIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF  412 (415)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998887654333333235778999999998887776553

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.05  E-value=5.3e-09  Score=92.29  Aligned_cols=156  Identities=21%  Similarity=0.142  Sum_probs=118.5

Q ss_pred             EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchh-------------hhcC-cCCCC
Q psy14877          3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGD-------------LLEN-YCWYD   68 (221)
Q Consensus         3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~-------------il~~-~~~~~   68 (221)
                      ++|.+|.+++++.++++++ +|+.+|+...+..+++++|+.+........+.+.-.+             ...+ .. +.
T Consensus       189 ~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~  266 (381)
T TIGR00837       189 TSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLK-SS  266 (381)
T ss_pred             HHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhcc-ch
Confidence            4678888899999999867 5689999999999999999988776665554321111             1111 11 22


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccchH-HHHHHhhhhhhhhH
Q psy14877         69 DLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCLG-VVLELNGVLAAVPL  147 (221)
Q Consensus        69 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~~~-~~~~l~Ga~~~~~l  147 (221)
                      +...+...+-.+.+.+|+.-.....+|.+.+.+.++. ++.+|.....+..+...++|.+.|+.. ..++..| +.+..+
T Consensus       267 ~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-~~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~  344 (381)
T TIGR00837       267 AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-SKKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIW  344 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHH
Confidence            3556777888888999999989999999888876642 223355666777788888999999877 8999999 888899


Q ss_pred             HHhhhhhHhhhhccC
Q psy14877        148 AFILPALSYLKLESG  162 (221)
Q Consensus       148 ~fi~P~l~yl~~~~~  162 (221)
                      .+++|+++++|.+++
T Consensus       345 ~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       345 AVIIPALLAWKARKK  359 (381)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999997654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.77  E-value=6.9e-07  Score=79.55  Aligned_cols=179  Identities=20%  Similarity=0.161  Sum_probs=124.4

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHH--HHHHH---------hcccCcch--hhhcCcCCCC
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFG--IAGYA---------TFTGNVQG--DLLENYCWYD   68 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g--~~gy~---------~fg~~~~~--~il~~~~~~~   68 (221)
                      .+||..|..+|++.+.+++- +||.+++......+..++|+..-  +.|-+         .-+++..+  ..+.+...+.
T Consensus       194 ~~Sf~f~~ivPsl~~~~~~d-~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  272 (394)
T PF03222_consen  194 VFSFGFHNIVPSLVKYLGGD-PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSP  272 (394)
T ss_pred             HHHHHHHhhhHHHHHHhCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCc
Confidence            57899999999999999744 44788888888888888888753  33311         11111111  2233333334


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhH
Q psy14877         69 DLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNGVLAAVPL  147 (221)
Q Consensus        69 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~Ga~~~~~l  147 (221)
                      .....+.++-.+.+.+||-=.....+|.+.+.++.++. ...|........+...++|+..|+ +-..+++.| .....+
T Consensus       273 ~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~-~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il  350 (394)
T PF03222_consen  273 WISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNN-SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAIL  350 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHH
Confidence            55667788889999999998888999999999876432 334455556667777888988884 568999999 888999


Q ss_pred             HHhhhhhHhhhhccCCcc-cc----hhhhHHHHHHHHHHHH
Q psy14877        148 AFILPALSYLKLESGSIF-SK----QKLPALGLALFGVMVA  183 (221)
Q Consensus       148 ~fi~P~l~yl~~~~~~~~-~~----~~i~~~~i~~~Gv~~~  183 (221)
                      ..++|+++.+|.++++.. .+    .+....+++++|++..
T Consensus       351 ~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii  391 (394)
T PF03222_consen  351 LGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII  391 (394)
T ss_pred             HHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence            999999999998654321 12    2445556666665544

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.66  E-value=1.3e-06  Score=78.03  Aligned_cols=183  Identities=18%  Similarity=0.071  Sum_probs=127.1

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHH--HHHHHh---------cccCcchhhhcCcC---CC
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFG--IAGYAT---------FTGNVQGDLLENYC---WY   67 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g--~~gy~~---------fg~~~~~~il~~~~---~~   67 (221)
                      .+||..|.++|++.+.+++.. +|.+++...+..+..++|+..=  +.|-..         -+++++ ..+..+.   ++
T Consensus       202 ~~SFgfh~iIPsl~~y~~~d~-~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L~~~l~~~~~~  279 (414)
T PRK10483        202 LASFGYHGNVPSLMKYYGKDP-KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VLVQALSGVLNS  279 (414)
T ss_pred             HhhccCCCcchHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HHHHHHHHhcCC
Confidence            589999999999999987433 4889999999999999998843  333222         222221 1112221   22


Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q psy14877         68 DDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNGVLAAVP  146 (221)
Q Consensus        68 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~Ga~~~~~  146 (221)
                      ........++-.+.+.+||-=.....+|.+.+.++.++. ...|...-....+...++|...|+ |-..++..|.. ...
T Consensus       280 ~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~-~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i  357 (414)
T PRK10483        280 RSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS-AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI  357 (414)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence            344566778888899999988888999999999876532 233455556678888999999997 77899999987 566


Q ss_pred             HHHhhhhhHhhhhccC-Ccccc----hhhhHHHHHHHHHHHHHHHHH
Q psy14877        147 LAFILPALSYLKLESG-SIFSK----QKLPALGLALFGVMVAFVGLI  188 (221)
Q Consensus       147 l~fi~P~l~yl~~~~~-~~~~~----~~i~~~~i~~~Gv~~~v~g~~  188 (221)
                      +.-++|+++.+|.+|+ +...+    .|..-.+++++|+...+.-..
T Consensus       358 l~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~~i~  404 (414)
T PRK10483        358 WAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALVHIL  404 (414)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999998764 22222    234446666777666654443

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.60  E-value=2.7e-06  Score=75.86  Aligned_cols=184  Identities=15%  Similarity=0.100  Sum_probs=131.1

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----ch-----hhhcCcC---CCC
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-----QG-----DLLENYC---WYD   68 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~-----~il~~~~---~~~   68 (221)
                      .+||..|..+|++.+.+++ +.+|.+|+...+.++..++|+..=......-+.+.     ++     ++++.+.   +..
T Consensus       191 ~~SFgfh~iIpsl~~y~~~-~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  269 (403)
T PRK15132        191 FTSFGFHGSVPSIVSYMGG-NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASP  269 (403)
T ss_pred             HHHhhCCcccHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccCh
Confidence            5799999999999999864 44578899999999988888877554444333221     11     2222222   233


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccch-HHHHHHhhhhhhhhH
Q psy14877         69 DLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDCL-GVVLELNGVLAAVPL  147 (221)
Q Consensus        69 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~~-~~~~~l~Ga~~~~~l  147 (221)
                      +....+..+-.+.+.+||-=.....+|.+.+.+..++. ...|........+...++|+..|+. ....++.|. ....+
T Consensus       270 ~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~-~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail  347 (403)
T PRK15132        270 HVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT-VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVL  347 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHH
Confidence            55667777778888999988888999999998865422 2335666777888888999999865 678888776 46789


Q ss_pred             HHhhhhhHhhhhccCC-cccc----hhhhHHHHHHHHHHHHHHHHH
Q psy14877        148 AFILPALSYLKLESGS-IFSK----QKLPALGLALFGVMVAFVGLI  188 (221)
Q Consensus       148 ~fi~P~l~yl~~~~~~-~~~~----~~i~~~~i~~~Gv~~~v~g~~  188 (221)
                      .+++|+++.+|.++++ ..+.    .|...++++++|++..+.-..
T Consensus       348 ~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~~  393 (403)
T PRK15132        348 ALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQFL  393 (403)
T ss_pred             HHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987643 1112    356678888888877765443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.46  E-value=1.1e-05  Score=72.10  Aligned_cols=183  Identities=16%  Similarity=0.054  Sum_probs=124.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHH--HHHHHH---------hcccCcchh---hhcCcCCC
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLF--GIAGYA---------TFTGNVQGD---LLENYCWY   67 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~--g~~gy~---------~fg~~~~~~---il~~~~~~   67 (221)
                      .+||+.|+++|++.+.+++.. ++.+++......+..++|+.-  .+.|-+         .-|+++.+-   ...+ .+.
T Consensus       203 ~~SFgfh~iIPsl~~y~~~d~-~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~  280 (415)
T PRK09664        203 LASFGFHGNIPSLIICYGKRK-DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQH  280 (415)
T ss_pred             HHhhhCCCcchHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccC
Confidence            478999999999999987443 355666666666666677443  222311         222233221   1112 223


Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q psy14877         68 DDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNGVLAAVP  146 (221)
Q Consensus        68 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~Ga~~~~~  146 (221)
                      .+......++-.+.+.+||-=......|.+.+.++.++. ...|...-....+...+.|...|+ |-..++..|.. ...
T Consensus       281 ~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~-~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~i  358 (415)
T PRK09664        281 GIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS-HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATI  358 (415)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence            455667778888899999988888999999998866532 234555566678888899999997 78899999996 557


Q ss_pred             HHHhhhhhHhhhhccC-Ccccc----hhhhHHHHHHHHHHHHHHHHH
Q psy14877        147 LAFILPALSYLKLESG-SIFSK----QKLPALGLALFGVMVAFVGLI  188 (221)
Q Consensus       147 l~fi~P~l~yl~~~~~-~~~~~----~~i~~~~i~~~Gv~~~v~g~~  188 (221)
                      +.-++|+++-||.+++ +...+    .|..-.+.+++|++..+.-..
T Consensus       359 l~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~~  405 (415)
T PRK09664        359 WAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFG  405 (415)
T ss_pred             HHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999998765 21111    255566777777776664443

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.25  E-value=3.2e-05  Score=69.45  Aligned_cols=187  Identities=13%  Similarity=0.090  Sum_probs=130.0

Q ss_pred             eEEeechhhHHHHHHHhhcc-------c--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----chhh--h----
Q psy14877          2 DGAFMCHHNVFLLYESIEGA-------S--QFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-----QGDL--L----   61 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p-------~--~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~~i--l----   61 (221)
                      +|||..|+.+++....+|+.       +  .+|.+++...+.++..++|+..-+..-..-+.+-     ++|+  +    
T Consensus       219 v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La  298 (443)
T PRK13629        219 VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLA  298 (443)
T ss_pred             HHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHH
Confidence            57899999999998885333       3  5688899999999888888887666655554321     1111  1    


Q ss_pred             cCcCCC--------ChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc----c-CC---CCchhhhHHHHHHHHHHHH
Q psy14877         62 ENYCWY--------DDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNA----Y-HS---TDKQHVGFTLAIVLITYFI  125 (221)
Q Consensus        62 ~~~~~~--------~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~----~-~~---~~~~~~~~~~~i~~~~~~l  125 (221)
                      +.++++        ........+.-.+.+.+||-=.....+|.++.++.+    . +.   .+..+....+++.+.++.+
T Consensus       299 ~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  378 (443)
T PRK13629        299 NHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVV  378 (443)
T ss_pred             HHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHH
Confidence            112221        123445566666788888887788889999888742    1 11   1222556677888889999


Q ss_pred             HHhccchHHHHHHhhhhhhhhHHHhhhhhHhhhhccCCcccchhhhHHHHHHHHHHHHHHHHHH
Q psy14877        126 SITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESGSIFSKQKLPALGLALFGVMVAFVGLIQ  189 (221)
Q Consensus       126 A~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~~~~~~~~~~~~i~~~~i~~~Gv~~~v~g~~~  189 (221)
                      ++.=|++-.+++-+|+-....+.|++|...-+|...-++.| .+..++++++.|+++.....|.
T Consensus       379 ~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~~  441 (443)
T PRK13629        379 AYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVYK  441 (443)
T ss_pred             HHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHHh
Confidence            99999999999988888888899999998887763322121 2335789999998887766554

>TIGR00814 stp serine transporter

Probab=98.10  E-value=1.7e-05  Score=70.80  Aligned_cols=177  Identities=11%  Similarity=0.083  Sum_probs=120.2

Q ss_pred             eEEeechhhHHHHHHHh----hccc--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----chh--hhcCcC---
Q psy14877          2 DGAFMCHHNVFLLYESI----EGAS--QFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-----QGD--LLENYC---   65 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m----~~p~--~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~~~--il~~~~---   65 (221)
                      .|||..|..+++...+.    +||+  .+|.+++...+..+..++|+..-+......+.+.     ++|  .+..+.   
T Consensus       196 ~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~  275 (397)
T TIGR00814       196 VFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHF  275 (397)
T ss_pred             HHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhc
Confidence            57899999999998444    3233  5678889999999888888887776666665432     111  122111   


Q ss_pred             CCChHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccc----C---CCCchhhhHHHHHHHHHHHHHHhccchHHHHHH
Q psy14877         66 WYDDLMNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY----H---STDKQHVGFTLAIVLITYFISITTDCLGVVLEL  138 (221)
Q Consensus        66 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~----~---~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l  138 (221)
                      +......+....-.+.+..||-=.....+|.+.+++.+.    +   .++..+.....++.+.++..|+.=|++-.+++-
T Consensus       276 ~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~  355 (397)
T TIGR00814       276 NAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEA  355 (397)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            123444556666677888888888889999999987311    1   112224455677788888999999999999998


Q ss_pred             hhhhhhhhHHHhhhhhHhhhhccCCcccch-hhhHHHHHHHHH
Q psy14877        139 NGVLAAVPLAFILPALSYLKLESGSIFSKQ-KLPALGLALFGV  180 (221)
Q Consensus       139 ~Ga~~~~~l~fi~P~l~yl~~~~~~~~~~~-~i~~~~i~~~Gv  180 (221)
                      +|+-....+.|++|...-.|...-+  ++| +..++++++.|+
T Consensus       356 ~~gp~~a~i~~~~p~~~~~~v~~l~--~~~~~~~~~fv~~~g~  396 (397)
T TIGR00814       356 LGGPIIAMILFLMPMYAIYKVPALK--KYRGRISNVFVTVIGL  396 (397)
T ss_pred             hhHHHHHHHHHHHHHHHHHccHHHH--HhCCCcchheeEeeec
Confidence            8888888899999998887763211  122 244666666664

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.48  E-value=0.0093  Score=53.82  Aligned_cols=47  Identities=15%  Similarity=-0.031  Sum_probs=40.6

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY   49 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy   49 (221)
                      .|+|.+-.......+|+|||++ +.+++...+..++.++|.+..+.-.
T Consensus       201 ~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~  247 (445)
T PRK10644        201 LWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSSTAIM  247 (445)
T ss_pred             HHHHHhHHHHHHHHHHhhCccc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888889999999999985 6899999999999999999887643

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.36  E-value=0.017  Score=52.65  Aligned_cols=48  Identities=6%  Similarity=-0.059  Sum_probs=39.6

Q ss_pred             EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877          3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT   51 (221)
Q Consensus         3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~   51 (221)
                      |+|.+-..+....+|+|||++ +.+++...+...+.++|....+.-...
T Consensus       205 ~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~  252 (474)
T TIGR03813       205 LFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFI  252 (474)
T ss_pred             HHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578888888899999999985 689999999999999998766554333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK11021 putative transporter; Provisional

Probab=97.27  E-value=0.033  Score=49.67  Aligned_cols=45  Identities=11%  Similarity=0.038  Sum_probs=40.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA   47 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~   47 (221)
                      .|+|.+-..+....+|+|||++ +.+++...+...+.++|+.....
T Consensus       187 ~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        187 FWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999985 68999999999999999998754

>PRK10655 potE putrescine transporter; Provisional

Probab=97.26  E-value=0.027  Score=50.64  Aligned_cols=47  Identities=11%  Similarity=-0.108  Sum_probs=39.9

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY   49 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy   49 (221)
                      .|+|.+-..+..+.+|+|||++ +.+++...+..++.++|++......
T Consensus       199 ~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        199 LWAFLGLESACANSDAVENPER-NVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHhhhhhhhhhHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888889999999999985 6899999999999999998765443

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.16  E-value=0.022  Score=51.36  Aligned_cols=46  Identities=9%  Similarity=0.096  Sum_probs=39.6

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAG   48 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~g   48 (221)
                      .|+|.+-..+..+.+|+|||+| +.+++...++.++.++|.......
T Consensus       205 ~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        205 SWSYTGMASICYMTGEIKNPGK-TMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHhhHHHHHhhHHHhcCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888889999999999985 689999999999999999876643

>TIGR00909 2A0306 amino acid transporter

Probab=97.03  E-value=0.03  Score=50.09  Aligned_cols=47  Identities=15%  Similarity=0.075  Sum_probs=40.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY   49 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy   49 (221)
                      .|+|.+...+....+|+|||++ +.+|+...+..++.++|+.......
T Consensus       205 ~~af~G~e~~~~~~~E~~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       205 FFAFIGFEAISTAAEEVKNPER-DIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHhhHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888999999999999974 6889999999999999999876544

>KOG1287|consensus

Probab=97.02  E-value=0.0099  Score=53.95  Aligned_cols=162  Identities=8%  Similarity=0.059  Sum_probs=98.4

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCcchhhh-cCcCCC--ChHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT--GNVQGDLL-ENYCWY--DDLMNLARL   76 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg--~~~~~~il-~~~~~~--~~~~~~~~~   76 (221)
                      .|||.+=..+=.+.+|+|||.| .++++..+++.+++++|+.+=+..+-.--  |-..+|.. ..+.+.  ..+.....+
T Consensus       214 lfa~~GWd~lN~vteEiknP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~  292 (479)
T KOG1287|consen  214 LFAFSGWDYLNYVTEEIKNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPF  292 (479)
T ss_pred             hhcccCchhhccchHhhcCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHH
Confidence            4788888888889999999985 69999999999999999998664433321  11111111 111110  122244455


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhccc--C----CCCchhh--hHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHH
Q psy14877         77 AFSFTILLTYPIECLVTRSVLLQVLNAY--H----STDKQHV--GFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLA  148 (221)
Q Consensus        77 ~~~i~~~~s~pl~~~p~~~~~~~~l~~~--~----~~~~~~~--~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~  148 (221)
                      +..++.+-+.--.++...+.+...-+++  |    +...++.  ...++...+..++.....++..+++.++=.-.....
T Consensus       293 ~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~  372 (479)
T KOG1287|consen  293 SVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRG  372 (479)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            5555555555444555444444433332  1    0111111  122333334444455677899999999988888888


Q ss_pred             HhhhhhHhhhhccCCc
Q psy14877        149 FILPALSYLKLESGSI  164 (221)
Q Consensus       149 fi~P~l~yl~~~~~~~  164 (221)
                      +.+=+++++|.++.+.
T Consensus       373 l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  373 LSMAGLLWLRWKHPPL  388 (479)
T ss_pred             HHHHHHHHHHhhCCCC
Confidence            9999999999876543

>PRK10746 putative transport protein YifK; Provisional

Probab=97.00  E-value=0.094  Score=47.69  Aligned_cols=158  Identities=6%  Similarity=-0.032  Sum_probs=84.6

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-Ccc---hhh---hcCcCCCChHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG-NVQ---GDL---LENYCWYDDLMNLA   74 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~-~~~---~~i---l~~~~~~~~~~~~~   74 (221)
                      .|+|.+-..+....+|.|||++ +.+++...++....++|......--..... +..   ++.   ..+... .....+.
T Consensus       210 ~faf~G~e~v~~~a~E~knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~  287 (461)
T PRK10746        210 VASYQGVELIGITAGEAKNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGII  287 (461)
T ss_pred             HHHhcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHH
Confidence            4788888999999999999985 689999888888888888864443332221 111   111   111110 1222333


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhccc----------CCCCch-hhhHHHHHHHHHHHHHHhccchHHHHHHhhhhh
Q psy14877         75 RLAFSFTILLTYPIECLVTRSVLLQVLNAY----------HSTDKQ-HVGFTLAIVLITYFISITTDCLGVVLELNGVLA  143 (221)
Q Consensus        75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~----------~~~~~~-~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~  143 (221)
                      .....+..+.+.--.++...+.+..+=..+          +..... -+.+.....++...+....|+-+.+++.+-+.+
T Consensus       288 ~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~  367 (461)
T PRK10746        288 NFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSAS  367 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            444444444444444444444444432222          111111 122222222222334445666666666655444


Q ss_pred             h--hhHHHhhhhhHhhhhcc
Q psy14877        144 A--VPLAFILPALSYLKLES  161 (221)
Q Consensus       144 ~--~~l~fi~P~l~yl~~~~  161 (221)
                      +  ..+.++++++-|+|.++
T Consensus       368 ~~~~~i~w~~i~~~~i~~r~  387 (461)
T PRK10746        368 VLPGMVPWFVILISQLRFRR  387 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            3  47888899888888754

>PRK11387 S-methylmethionine transporter; Provisional

Probab=96.96  E-value=0.091  Score=47.83  Aligned_cols=48  Identities=13%  Similarity=-0.029  Sum_probs=40.3

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA   50 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~   50 (221)
                      .|+|.+-..+....+|+|||++ +.+++...+...+.++|+...+..-.
T Consensus       216 ~faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~  263 (471)
T PRK11387        216 NFAFSGTELIGIAAGETENPAK-VIPVAIRTTIARLVIFFVGTVLVLAA  263 (471)
T ss_pred             HHHHcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            4688888999999999999985 68999999999999999888765433

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=96.92  E-value=0.082  Score=47.84  Aligned_cols=156  Identities=12%  Similarity=0.083  Sum_probs=82.6

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh--cccC-cc--h---hhhcCcCCCChHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT--FTGN-VQ--G---DLLENYCWYDDLMNL   73 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~--fg~~-~~--~---~il~~~~~~~~~~~~   73 (221)
                      .|+|.+-..+....+|+|||++ +.+++...++....++|+...+.--..  +.+. .+  +   ...+.... .....+
T Consensus       191 ~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~i  268 (446)
T PRK10197        191 MFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLI  268 (446)
T ss_pred             HHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHH
Confidence            4788899999999999999985 689998888999999999876553222  2221 00  0   11222221 123344


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHhccc-------CCC---Cchh-hhHHHHHHHHHHHHHHhcc--chHHHHHHhh
Q psy14877         74 ARLAFSFTILLTYPIECLVTRSVLLQVLNAY-------HST---DKQH-VGFTLAIVLITYFISITTD--CLGVVLELNG  140 (221)
Q Consensus        74 ~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~~~---~~~~-~~~~~~i~~~~~~lA~~ip--~~~~~~~l~G  140 (221)
                      ......+..+.+.--.++...+.+..+=+++       +.+   ...+ +.+...+.++..+.....|  .++.++++.+
T Consensus       269 i~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~  348 (446)
T PRK10197        269 MDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSG  348 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            4444444444444444444444444432221       111   1111 1122222222222222222  3566666665


Q ss_pred             hhhhhhHHHhhhhhHhhhhcc
Q psy14877        141 VLAAVPLAFILPALSYLKLES  161 (221)
Q Consensus       141 a~~~~~l~fi~P~l~yl~~~~  161 (221)
                      ...  .+.+.++++-+++.++
T Consensus       349 ~~~--li~y~~~~~a~i~lr~  367 (446)
T PRK10197        349 AIA--LLVYLVIAVSQLRMRK  367 (446)
T ss_pred             HHH--HHHHHHHHHHHHHHHH
Confidence            554  4788888888777643

>PRK10836 lysine transporter; Provisional

Probab=96.86  E-value=0.22  Score=45.51  Aligned_cols=47  Identities=4%  Similarity=-0.138  Sum_probs=40.4

Q ss_pred             EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA   50 (221)
Q Consensus         3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~   50 (221)
                      |+|.+-..+..+.+|.|||++ +.+++...++..+.++|......-..
T Consensus       216 faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~  262 (489)
T PRK10836        216 FSFQGTELIGIAAGESEDPAK-NIPRAVRQVFWRILLFYVFAILIISL  262 (489)
T ss_pred             HHHccHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            788889999999999999985 68999999999999999988655433

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=96.74  E-value=0.33  Score=44.11  Aligned_cols=44  Identities=11%  Similarity=-0.049  Sum_probs=38.9

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGI   46 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~   46 (221)
                      .|+|.+-..+..+.+|.|||++ +.+++...+...+.++|....+
T Consensus       207 ~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       207 AFSFGGTELVALTAGEAANPRK-SIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HhhhccHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999985 6899999999999999998754

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=96.74  E-value=0.087  Score=46.93  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---chhh---hcCc-C--CCChHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV---QGDL---LENY-C--WYDDLMN   72 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~---~~~i---l~~~-~--~~~~~~~   72 (221)
                      .|+|.+-.......+|+||   |+.+++...+.+++.++|......-....+++.   .++.   ...+ .  ..++...
T Consensus       198 ~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (426)
T PF13520_consen  198 FFAFSGFEAIASLAEENKN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAI  274 (426)
T ss_dssp             GGGGTTTTHHHHGGGGSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHH
T ss_pred             Hhhcccccccccccccccc---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccc
Confidence            4678888899999999877   479999999999999999999877666665532   1121   1111 0  0135555


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc
Q psy14877         73 LARLAFSFTILLTYPIECLVTRSVLLQVLNA  103 (221)
Q Consensus        73 ~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~  103 (221)
                      +..+...+..+.+..-......+.+..+-++
T Consensus       275 ~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d  305 (426)
T PF13520_consen  275 IVSIAAILSLFGSINAFIFGASRLLYAMARD  305 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccchhhcchhhcccccccc
Confidence            5566666666666666666555565555443

...

>TIGR00908 2A0305 ethanolamine permease

Probab=96.73  E-value=0.074  Score=47.86  Aligned_cols=45  Identities=7%  Similarity=-0.056  Sum_probs=37.1

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA   47 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~   47 (221)
                      .|+|.+...+..+.+|+|||++ +.+++...+..++.++|+..-..
T Consensus       201 ~~af~G~e~~~~~aeE~k~P~r-~iprai~~s~~~~~~~~~~~~~~  245 (442)
T TIGR00908       201 IWFFLAVEGVAMAAEETKNPKR-DIPRGLIGAILTLLALAAGILVV  245 (442)
T ss_pred             HHHHHHHHHHHHHHHHhcCccc-ccCHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999985 57888888888888888776443

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=96.71  E-value=0.14  Score=46.53  Aligned_cols=49  Identities=18%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877          3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT   53 (221)
Q Consensus         3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg   53 (221)
                      |+|.+-.....+.+|.||+  |+.+++...++..+.++|..+.+..+...+
T Consensus       206 ~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       206 WVFIGIEGASMLSARAEKR--SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHhHhHHhhhHhhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            5666666777778888874  479999999999999999998876655443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00911 2A0308 L-type amino acid transporter

Probab=96.67  E-value=0.11  Score=47.66  Aligned_cols=47  Identities=15%  Similarity=0.120  Sum_probs=40.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY   49 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy   49 (221)
                      .|+|.+-..+..+.+|+|||++ +.+++...+..++.++|++..+.-.
T Consensus       245 ~~af~G~e~~~~~a~E~knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       245 IWAYGGWNYLNFVTEEVKNPYR-TLPIAIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHHhHHHHhhhHHHhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888888999999999985 6899999999999999999865543

>PRK15049 L-asparagine permease; Provisional

Probab=96.65  E-value=0.12  Score=47.65  Aligned_cols=49  Identities=8%  Similarity=-0.231  Sum_probs=40.1

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYAT   51 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~   51 (221)
                      .|+|.+-..+....+|.|||++ +.+++...++....++|+.........
T Consensus       230 ~faf~G~e~i~~~aeE~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~  278 (499)
T PRK15049        230 VFAFASIEMVGTAAGECKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVML  278 (499)
T ss_pred             HHHHhhHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            4788888999999999999985 589999888888888888876654433

>PRK10249 phenylalanine transporter; Provisional

Probab=96.63  E-value=0.23  Score=45.12  Aligned_cols=45  Identities=7%  Similarity=-0.141  Sum_probs=38.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA   47 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~   47 (221)
                      .|+|.+-..+....+|+|||++ +.+++...++....++|......
T Consensus       219 ~~af~G~e~~~~~a~E~~~P~k-~iPrai~~~~~~~~~~y~~~~~~  263 (458)
T PRK10249        219 MFSFGGLELIGITAAEARDPEK-SIPKAVNQVVYRILLFYIGSLVV  263 (458)
T ss_pred             HHHHcCHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888899999999999985 68999999999999999775443

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=96.59  E-value=0.19  Score=45.79  Aligned_cols=47  Identities=13%  Similarity=0.054  Sum_probs=38.5

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA   50 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~   50 (221)
                      .|+|.+-.....+.+|+|| + |+.++....+..++.++|+........
T Consensus       209 ~~af~G~e~~~~~a~E~k~-~-r~iPrai~~~~~i~~~~Yil~~~~~~~  255 (473)
T TIGR00905       209 LWVFIGIEGAVVSSGRAKN-K-SDVGKATVLGTLGALVIYILITLLSLG  255 (473)
T ss_pred             HHHHHhHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3677778888889999999 4 478999999999999999988765443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=96.44  E-value=0.4  Score=43.13  Aligned_cols=50  Identities=10%  Similarity=-0.006  Sum_probs=41.8

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATF   52 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~f   52 (221)
                      .|+|.+-..+....+|+|||++ +.+|+...+...+.++|+...+......
T Consensus       197 ~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        197 LWAFVGVESAAVSTGMVKNPKR-TVPLATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHhhHHHHHHHHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4678888899999999999975 6899999999999999999887654333

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=96.43  E-value=0.3  Score=44.44  Aligned_cols=47  Identities=9%  Similarity=-0.136  Sum_probs=37.9

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY   49 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy   49 (221)
                      .|+|.+-..+....+|+|||++ +.+++...+.+...++|......-.
T Consensus       221 ~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        221 VFAFVGIELVGTTAAETKDPEK-SLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHhcHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            4678888999999999999985 5888887777777888887665543

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=96.38  E-value=0.41  Score=43.60  Aligned_cols=50  Identities=18%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             EEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877          3 GAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT   53 (221)
Q Consensus         3 Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg   53 (221)
                      |+|.+-..+....+|+|||++ +.+++...+..+..+++....+.-....+
T Consensus       228 fsf~G~e~~~~~a~E~knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       228 WSMTGYDGTAHMAEEIENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             HHhcCcchhhHHHHhcCChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            678888899999999999985 68888888877766654444333333333

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=96.36  E-value=0.35  Score=44.61  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=36.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFG   45 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g   45 (221)
                      .|+|.+-..+....+|+|||++ +++++...+++++.++|....
T Consensus       204 ~faf~G~E~~a~~a~E~knP~r-~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       204 IGAYMGVEASASHINELENPGR-DYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHhcHHHHHHHHHHccCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence            3578888889999999999985 589999999888888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10238 aromatic amino acid transporter; Provisional

Probab=96.35  E-value=0.58  Score=42.44  Aligned_cols=42  Identities=12%  Similarity=-0.081  Sum_probs=34.1

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLF   44 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~   44 (221)
                      .|+|.+-..+....+|+|||++ +.+++...+.....++|...
T Consensus       210 ~~af~G~e~~~~~aeE~knP~r-~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        210 MFSFGGLELVGITAAEADNPEQ-SIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHhcCHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHH
Confidence            4678888889999999999985 58888887777777777654

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=96.35  E-value=0.41  Score=43.21  Aligned_cols=47  Identities=13%  Similarity=-0.096  Sum_probs=38.1

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGY   49 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy   49 (221)
                      .|+|.+-..+..+.+|+|||++ +.+++...+.....++|+.......
T Consensus       211 ~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       211 MFSFMGTEIVTIAAAESSNPIK-SITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHhccHHHHhHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            4678899999999999999985 6888888888888888888654433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.11  E-value=0.78  Score=41.10  Aligned_cols=52  Identities=12%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG   54 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~   54 (221)
                      .++|.+=..+.+..+|+|||++ +.++....+++.+.++|......-....++
T Consensus       211 ~~~f~G~e~~~~~a~E~knp~r-~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         211 FFAFTGFEAIATLAEEVKNPKR-TIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHhhcHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            4678888889999999999875 478899999999999999998877777765

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=95.99  E-value=0.26  Score=46.00  Aligned_cols=154  Identities=14%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-c--chhh---hcCcCCCChHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGN-V--QGDL---LENYCWYDDLMNLAR   75 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~-~--~~~i---l~~~~~~~~~~~~~~   75 (221)
                      .|+|.+-..+....+|.|||++ +.++....++.++.++|..+.+.-...-.++ .  ++.+   ..... .++...+..
T Consensus       241 ~faf~Gfd~v~~~aeE~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~  318 (557)
T TIGR00906       241 FFAFIGFDAIATTGEEVKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVA  318 (557)
T ss_pred             HHHHhhHHHHHHhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHH
Confidence            3678888999999999999985 5899999999999999999876543332221 1  1111   11111 123333334


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhccc-------CCCCchh--hhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhh
Q psy14877         76 LAFSFTILLTYPIECLVTRSVLLQVLNAY-------HSTDKQH--VGFTLAIVLITYFISITTDCLGVVLELNGVLAAVP  146 (221)
Q Consensus        76 ~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~~~~~~~--~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~  146 (221)
                      +........+.--.++...+.+..+=+.+       +..++.+  .........++.+++.. .+++.+.++..  .+..
T Consensus       319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~s--ig~l  395 (557)
T TIGR00906       319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLLS--IGTL  395 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHHH--HHHH
Confidence            44444444433333444444433332211       1111111  11122222233333433 35666666543  3346


Q ss_pred             HHHhhhhhHhhhhc
Q psy14877        147 LAFILPALSYLKLE  160 (221)
Q Consensus       147 l~fi~P~l~yl~~~  160 (221)
                      +.|.++++..+.++
T Consensus       396 l~y~lv~~~~l~lR  409 (557)
T TIGR00906       396 LAYSLVAACVLILR  409 (557)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888877665554

>PRK10580 proY putative proline-specific permease; Provisional

Probab=95.85  E-value=1.1  Score=40.61  Aligned_cols=45  Identities=4%  Similarity=-0.187  Sum_probs=36.4

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA   47 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~   47 (221)
                      .|+|.+-..+....+|+|||++ +.+++...+.....++|......
T Consensus       209 ~fsf~G~e~~~~~a~E~knP~k-~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        209 MFAYGGIEIIGITAGEAKDPEK-SIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHhCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888999999999999995 57888877777778888777544

>TIGR00930 2a30 K-Cl cotransporter

Probab=95.75  E-value=0.78  Score=45.67  Aligned_cols=43  Identities=12%  Similarity=-0.045  Sum_probs=36.7

Q ss_pred             EeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          4 AFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIA   47 (221)
Q Consensus         4 af~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~   47 (221)
                      ||.+-.....+..|+|||++ ..++....++.+++++|+++.+.
T Consensus       292 A~tGi~agan~sgElKnP~r-~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       292 SVTGILAGANISGDLKDPQK-AIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHhccChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677779999999985 58999999999999999999753

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=95.63  E-value=1.2  Score=40.89  Aligned_cols=46  Identities=17%  Similarity=-0.102  Sum_probs=38.9

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAG   48 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~g   48 (221)
                      .|+|.+-..+....+|+|||++ +.+|+...+...+.++|....++-
T Consensus       221 ~~~f~G~e~~~~~a~E~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~  266 (496)
T PRK15238        221 IFAYGGIEAVGGLVDKTENPEK-NFPKGIIIAAIVISIGYSLAIFLW  266 (496)
T ss_pred             HHHHHhHHHHHHHHHhccCCCc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888899999999999985 589999999999999999865433

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=95.41  E-value=1.5  Score=39.97  Aligned_cols=51  Identities=10%  Similarity=-0.012  Sum_probs=38.5

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT   53 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg   53 (221)
                      .|+|.+-..+..+.+|+|||++ +.+|....+..+..++|.++-+......+
T Consensus       223 ~~~f~G~e~~~~~aeE~knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       223 AYVMVGFGSAGELSEETKNPRR-VAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHhcCcchHHHHHHHhcCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3677888889999999999985 68999988888887766655544444333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=94.61  E-value=1  Score=39.29  Aligned_cols=149  Identities=14%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchh-------hhcCcCCC---ChHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNVQGD-------LLENYCWY---DDLM   71 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~-------il~~~~~~---~~~~   71 (221)
                      .++|.+...+.....++|||+  +.+|....+..++.++|...-+.....+|.+..++       ..+...-.   +..-
T Consensus       189 ~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e  266 (359)
T TIGR00912       189 TFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFE  266 (359)
T ss_pred             hhhhHHHHHHHHHHHHhCChh--hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHH
Confidence            366776666777778888765  68899999999999999998888888887543211       11111100   1112


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhccc-hHHHHHHhh---hhhhhhH
Q psy14877         72 NLARLAFSFTILLTYPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITTDC-LGVVLELNG---VLAAVPL  147 (221)
Q Consensus        72 ~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~ip~-~~~~~~l~G---a~~~~~l  147 (221)
                      .+.-.........+.-+..+.....+.++++.++   .|..+...+.  +.+.++. .|+ ... .+...   ...+...
T Consensus       267 ~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~  339 (359)
T TIGR00912       267 LIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK---YSILILPVLM--VIFSISF-FPDSSNQ-LFDYLEFLPIIAIVF  339 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---cchhHHHHHH--HHHHHHH-ccchHHH-HHHHHHHHHHHHHHH
Confidence            2233444566677777788889999998876532   2223333222  2333333 444 332 32322   2344567


Q ss_pred             HHhhhhhHhhhh
Q psy14877        148 AFILPALSYLKL  159 (221)
Q Consensus       148 ~fi~P~l~yl~~  159 (221)
                      .+++|-++.+-.
T Consensus       340 ~~~~P~ll~~i~  351 (359)
T TIGR00912       340 FLLLPLILFIIV  351 (359)
T ss_pred             HHHHHHHHHHHH
Confidence            778999877543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286|consensus

Probab=91.65  E-value=3.1  Score=38.98  Aligned_cols=155  Identities=13%  Similarity=0.073  Sum_probs=90.7

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHH--hccc-CcchhhhcC--c------CCCChH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYA--TFTG-NVQGDLLEN--Y------CWYDDL   70 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~--~fg~-~~~~~il~~--~------~~~~~~   70 (221)
                      .|+|.+--.+-...+|-|||++ ..+++...++..++++|....+.--+  .|.| +..++....  |      ..-..+
T Consensus       242 ~fsf~G~e~va~~a~E~kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~  320 (554)
T KOG1286|consen  242 FFSFIGFELVATTAEEAKNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYL  320 (554)
T ss_pred             HHHHhhHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCcccc
Confidence            3778888889999999999984 68999999999999999999865333  2222 122222110  0      001122


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccc-------C-CCCchhhhHHHHHHHHHHHHHHhccc-----hHHHHH
Q psy14877         71 MNLARLAFSFTILLTYPIECLVTRSVLLQVLNAY-------H-STDKQHVGFTLAIVLITYFISITTDC-----LGVVLE  137 (221)
Q Consensus        71 ~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~-~~~~~~~~~~~~i~~~~~~lA~~ip~-----~~~~~~  137 (221)
                      ..+..+...+.+..+---.+++.-+.+-.+-..+       + .++.+-+...+...+...+.++....     ++.+++
T Consensus       321 ~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~  400 (554)
T KOG1286|consen  321 PHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVN  400 (554)
T ss_pred             chhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            2466666677776666667778777777764433       1 12222222233333333333333322     477877


Q ss_pred             HhhhhhhhhHHHhhhhhHhhhh
Q psy14877        138 LNGVLAAVPLAFILPALSYLKL  159 (221)
Q Consensus       138 l~Ga~~~~~l~fi~P~l~yl~~  159 (221)
                      +.|--.  ++++.+=++.|++.
T Consensus       401 ~~si~t--l~~w~~i~~~~i~~  420 (554)
T KOG1286|consen  401 LSSIGT--LFAWTLVALSHLRF  420 (554)
T ss_pred             HHhHHH--HHHHHHHHHHHeee
Confidence            776544  45555555555544

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=91.18  E-value=11  Score=33.99  Aligned_cols=83  Identities=16%  Similarity=0.050  Sum_probs=56.1

Q ss_pred             CCCchhhhHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHhhhhhHhhhhccC-----CcccchhhhHHHHHHHHH
Q psy14877        106 STDKQHVGFTLAIVLITYFISITTDCLGVVLELNGVLAAVPLAFILPALSYLKLESG-----SIFSKQKLPALGLALFGV  180 (221)
Q Consensus       106 ~~~~~~~~~~~~i~~~~~~lA~~ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~~~~~-----~~~~~~~i~~~~i~~~Gv  180 (221)
                      .+|.||...|......+.++.+..-+.+.++.+.+...+..+-+..++++++-.+|+     +.++|.++..|.+.++=+
T Consensus       322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~  401 (416)
T COG1914         322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIV  401 (416)
T ss_pred             chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHH
Confidence            357778888877676766665555599999999999998888888888777765553     224566666666555544


Q ss_pred             HHHHHHHH
Q psy14877        181 MVAFVGLI  188 (221)
Q Consensus       181 ~~~v~g~~  188 (221)
                      ...+.-++
T Consensus       402 ~L~i~li~  409 (416)
T COG1914         402 ALNIILLV  409 (416)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK00701 manganese transport protein MntH; Reviewed

Probab=88.66  E-value=19  Score=32.78  Aligned_cols=81  Identities=16%  Similarity=0.044  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHhc--cchHHHHHHhhhhhh
Q psy14877         71 MNLARLAFSFTILLT----YPIECLVTRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISITT--DCLGVVLELNGVLAA  144 (221)
Q Consensus        71 ~~~~~~~~~i~~~~s----~pl~~~p~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~i--p~~~~~~~l~Ga~~~  144 (221)
                      -..++..+.+.++.+    .+..........|..+..+...+.||...+...++...++....  .+...++.+..    
T Consensus       305 G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aq----  380 (439)
T PRK00701        305 GAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQ----  380 (439)
T ss_pred             hHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----
Confidence            344455554444322    22222233334455544432245566666666555555555444  33444444333    


Q ss_pred             hhHHHhhhhhH
Q psy14877        145 VPLAFILPALS  155 (221)
Q Consensus       145 ~~l~fi~P~l~  155 (221)
                      ....+.+|...
T Consensus       381 v~~~i~LP~~~  391 (439)
T PRK00701        381 VVLSFGLPFAL  391 (439)
T ss_pred             HHHHHHHHHHH
Confidence            34455555543

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=84.30  E-value=0.84  Score=41.51  Aligned_cols=52  Identities=19%  Similarity=0.050  Sum_probs=43.4

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTG   54 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~   54 (221)
                      .++|.+-..+...-+|.|||++ ..++....++....++|.......-...+.
T Consensus       210 ~~af~G~e~~a~~a~E~k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  210 FFAFVGFESIAILAEEAKNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             hcccccccccccccccCCCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            4678888888889999999985 689999999999999999888765555544

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=84.19  E-value=33  Score=31.28  Aligned_cols=138  Identities=9%  Similarity=-0.018  Sum_probs=82.0

Q ss_pred             HHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-chhhhcCcCCCChHHHHHHHHHHHHHHhhhhhhhhH
Q psy14877         14 LYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-QGDLLENYCWYDDLMNLARLAFSFTILLTYPIECLV   92 (221)
Q Consensus        14 i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p   92 (221)
                      ..+-+|+|+.++.-............+-.++|...-.+-|+.- ..++...+.   .+...+-+...+..+.+.-..+|+
T Consensus       216 ysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~~g~~~~lil~l~~~ttN~~nlYs  292 (442)
T COG1457         216 YSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---GFGLPAILILVLGTVTTNANNLYS  292 (442)
T ss_pred             hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---cHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4445566653333344445556666666777777777776655 444444443   277788888889999999999999


Q ss_pred             HHHHHHHHhcccCCCCchhhhHHHHHHHHHHHHHHh----ccchHHHHHHhhhhhhhhHHHhhhhhHhhh
Q psy14877         93 TRSVLLQVLNAYHSTDKQHVGFTLAIVLITYFISIT----TDCLGVVLELNGVLAAVPLAFILPALSYLK  158 (221)
Q Consensus        93 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~lA~~----ip~~~~~~~l~Ga~~~~~l~fi~P~l~yl~  158 (221)
                      .--.+.....+  .++..+.+.....  ..+++|+.    ..+++.++.++|+...+.....+=-.+..|
T Consensus       293 a~ls~~~i~~~--l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r  358 (442)
T COG1457         293 AGLSFANIIPK--LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR  358 (442)
T ss_pred             HHHHHHHhhhh--hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98888887654  2233333322221  33444443    456777777777776554444433333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	97.84
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.28
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.16

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=97.84  E-value=0.00045  Score=60.37  Aligned_cols=157  Identities=11%  Similarity=0.017  Sum_probs=85.7

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-c---hhh---hcCcCCCChHHHHH
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGNV-Q---GDL---LENYCWYDDLMNLA   74 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~~-~---~~i---l~~~~~~~~~~~~~   74 (221)
                      .|+|.+...+....+|+|||++ +.++....+...+.++|+...+......+.+. .   ++.   .+... .++...+.
T Consensus       201 ~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~  278 (445)
T 3l1l_A          201 LWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIV  278 (445)
T ss_dssp             HHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHH
T ss_pred             HHHHHhHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHH
Confidence            4678889999999999999974 68899999999999999999887766665432 1   111   11110 12333444


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhccc-------CCCCchhhhHHHHH--HHHHHHHHHh--cc----chHHHHHHh
Q psy14877         75 RLAFSFTILLTYPIECLVTRSVLLQVLNAY-------HSTDKQHVGFTLAI--VLITYFISIT--TD----CLGVVLELN  139 (221)
Q Consensus        75 ~~~~~i~~~~s~pl~~~p~~~~~~~~l~~~-------~~~~~~~~~~~~~i--~~~~~~lA~~--ip----~~~~~~~l~  139 (221)
                      .+...+..+.+.--..+...+.+..+=+.+       +.+ .++.-.+..+  ..++.++...  .|    .++.+.++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  357 (445)
T 3l1l_A          279 SFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVS  357 (445)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            444444444444434444444333332221       111 1111111111  1112222222  23    345555554


Q ss_pred             hhhhhhhHHHhhhhhHhhhhccCC
Q psy14877        140 GVLAAVPLAFILPALSYLKLESGS  163 (221)
Q Consensus       140 Ga~~~~~l~fi~P~l~yl~~~~~~  163 (221)
                      +  .+..+.|.++++.+++.++++
T Consensus       358 ~--~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          358 V--IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHSSS
T ss_pred             H--HHHHHHHHHHHHHHHHHhhcC
Confidence            4  345688999999988876543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.28  E-value=0.0022  Score=55.93  Aligned_cols=51  Identities=16%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFT   53 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg   53 (221)
                      .|+|.+...+....+|+|||++ +.++....+...+.++|....+......+
T Consensus       198 ~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          198 FLSYMGFGVITNASEHIENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             GGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhHHHHHHHHHHccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4788999999999999999974 58999999999999999998877655554

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.16  E-value=0.0098  Score=52.77  Aligned_cols=53  Identities=11%  Similarity=0.071  Sum_probs=44.8

Q ss_pred             eEEeechhhHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy14877          2 DGAFMCHHNVFLLYESIEGASQFVWDKLTHISVAVAFVVSLLFGIAGYATFTGN   55 (221)
Q Consensus         2 ~Faf~~h~~v~~i~~~m~~p~~~~~~~v~~~a~~~~~~~y~~~g~~gy~~fg~~   55 (221)
                      .|+|.+...+....+|+|||++ +.+++...++.++.++|....+.-....+++
T Consensus       211 ~~a~~G~e~~~~~a~E~k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          211 ILSYMGVEASATHVNEMSNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             HHHHTTGGGGTGGGSSSSCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHhhHHHHHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            3678888888999999999984 5899999999999999999988776666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00