Psyllid ID: psy14917

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT
cHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccEEEEEEEEcccccccccccccccEEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHccEEccccccccccccccccccccccEEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHcccccHHHHEEcccccEEEEcccHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHccccccEEEcHcEEEEEEcccccccccEEcccEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEHHHEEEEEccccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHccc
MAASAIANIVKsslgpvgldkmlvddigdvtvtndGATILRLLEVEHPAARVLVELAQlqdeevgdgTTSVVIVAAELLKNADELVKqkihptsvisGYRLACKEACKYIQQQLTISVDELGKECLINAAktsmsskligpddnffATMVVDAAQAIKIteksgnvtypIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVlvndpekldgiraRESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLtslsnmegeesfeasslgeAAEVVQtqvcddelilingpkartAASIIlrgpndfycdEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT
MAASAIANIvksslgpvglDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAqlqdeevgdGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKiteksgnvtyPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVevlvndpekldgiraresditkERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKAtgasfltslsnMEGEESFEASSLGEAAEVVQTQVCDDELILingpkartaasiILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT
MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLvagggaveaaLSIYLENFATT
******ANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLT*******************AEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENF***
MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFA**
MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSN**************AAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT
MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT
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MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
P12613 557 T-complex protein 1 subun yes N/A 1.0 0.730 0.820 0.0
Q9W790 559 T-complex protein 1 subun N/A N/A 0.997 0.726 0.780 0.0
P18279 556 T-complex protein 1 subun yes N/A 1.0 0.732 0.776 0.0
P17987 556 T-complex protein 1 subun yes N/A 1.0 0.732 0.773 0.0
P28480 556 T-complex protein 1 subun yes N/A 1.0 0.732 0.776 0.0
Q32L40 556 T-complex protein 1 subun yes N/A 1.0 0.732 0.776 0.0
Q4R5G2 556 T-complex protein 1 subun N/A N/A 1.0 0.732 0.771 0.0
Q9XT06 557 T-complex protein 1 subun yes N/A 1.0 0.730 0.769 0.0
P11983 556 T-complex protein 1 subun yes N/A 1.0 0.732 0.759 0.0
P41988 549 T-complex protein 1 subun yes N/A 0.995 0.737 0.729 1e-175
>sp|P12613|TCPA_DROME T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2 Back     alignment and function desciption
 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/407 (82%), Positives = 370/407 (90%)

Query: 1   MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
           MAA +I+NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAA+VLVELAQLQ
Sbjct: 26  MAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQ 85

Query: 61  DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
           DEEVGDGTTSVVI+AAELLKNADELVKQKIHPTS+ISGYR+ACKEACKYI + LT  VDE
Sbjct: 86  DEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDE 145

Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
           LG++ LIN AKTSMSSK+IG D  FF+ MVVDAAQ++KIT+  G   Y IKAIN+LKAHG
Sbjct: 146 LGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINVLKAHG 205

Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
           KSARESVL+ GYALNCT+ASQ M KKI NAKIACLDFSLQK KMK+GV+VL+NDP+KL+ 
Sbjct: 206 KSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKMGVQVLINDPDKLEA 265

Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
           IRARE DITKERIN IL TG NV+LVSGG+DDLC+KYFVEAGAMAVRRVKK DLK IAKA
Sbjct: 266 IRARELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRVKKSDLKIIAKA 325

Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
           TGA+F+TSL+NM+GEESF+AS +GEAAEV Q ++CDDELILI G KAR AASIILRGPND
Sbjct: 326 TGAAFITSLTNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPND 385

Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
           FYCDEMERS+HDALCVVKRVLESK +VAGGG VEAALSIYLENFAT+
Sbjct: 386 FYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATS 432
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Drosophila melanogaster (taxid: 7227)
>sp|Q9W790|TCPA_PALPA T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P18279|TCPA_CRIGR T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P17987|TCPA_HUMAN T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1 Back     alignment and function description
>sp|P28480|TCPA_RAT T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1 Back     alignment and function description
>sp|Q32L40|TCPA_BOVIN T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R5G2|TCPA_MACFA T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XT06|TCPA_MONDO T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1 Back     alignment and function description
>sp|P11983|TCPA_MOUSE T-complex protein 1 subunit alpha OS=Mus musculus GN=Tcp1 PE=1 SV=3 Back     alignment and function description
>sp|P41988|TCPA_CAEEL T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
156550171 557 PREDICTED: T-complex protein 1 subunit a 1.0 0.730 0.855 0.0
307177107 534 T-complex protein 1 subunit alpha [Campo 1.0 0.762 0.859 0.0
157122017 557 chaperonin [Aedes aegypti] gi|108874611| 1.0 0.730 0.845 0.0
91077066 557 PREDICTED: similar to chaperonin [Tribol 1.0 0.730 0.835 0.0
307207508 532 T-complex protein 1 subunit alpha [Harpe 1.0 0.765 0.845 0.0
158291637 557 AGAP004238-PA [Anopheles gambiae str. PE 1.0 0.730 0.845 0.0
66560172 557 PREDICTED: t-complex protein 1 subunit a 1.0 0.730 0.837 0.0
350404950 557 PREDICTED: T-complex protein 1 subunit a 1.0 0.730 0.837 0.0
380011108 557 PREDICTED: T-complex protein 1 subunit a 1.0 0.730 0.832 0.0
340713325 557 PREDICTED: t-complex protein 1 subunit a 1.0 0.730 0.835 0.0
>gi|156550171|ref|XP_001602512.1| PREDICTED: T-complex protein 1 subunit alpha-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/407 (85%), Positives = 380/407 (93%)

Query: 1   MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
           MAASAIANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATILRLLEVEHPAARVLVELAQLQ
Sbjct: 26  MAASAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILRLLEVEHPAARVLVELAQLQ 85

Query: 61  DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
           DEEVGDGTTSVVI+AAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQ+ LT+SV+E
Sbjct: 86  DEEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQEHLTVSVEE 145

Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
           LGK+CL+N AKTSMSSK+I  D +FF  MVVDAA A+KI++  GNV YPIKA+N+LKAHG
Sbjct: 146 LGKDCLVNVAKTSMSSKIINADSDFFGNMVVDAANAVKISDGKGNVLYPIKAVNVLKAHG 205

Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
           KS RES ++QGYALNCTVASQ M KKI NAKIACLDFSLQKAKMK+GVEVL+NDPEKL+G
Sbjct: 206 KSVRESTIIQGYALNCTVASQLMVKKIVNAKIACLDFSLQKAKMKMGVEVLINDPEKLEG 265

Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
           IR RESDITKERI KILATGANVIL +GGIDDLCLKYFV+AGAMAVRR KKVDLKRIAKA
Sbjct: 266 IRQRESDITKERIQKILATGANVILCTGGIDDLCLKYFVDAGAMAVRRCKKVDLKRIAKA 325

Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
           TGA FLTSL+NMEGEE+F+A+ LGEAAEV   Q+CDDELI+I GPKARTA+SIILRGPND
Sbjct: 326 TGAHFLTSLTNMEGEEAFDANFLGEAAEVATEQICDDELIVIKGPKARTASSIILRGPND 385

Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
           +YCDEMERSIHDALCVVKRVLESK++VAGGG VEAALSIYLENFAT+
Sbjct: 386 YYCDEMERSIHDALCVVKRVLESKSVVAGGGCVEAALSIYLENFATS 432

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307177107|gb|EFN66362.1| T-complex protein 1 subunit alpha [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157122017|ref|XP_001659922.1| chaperonin [Aedes aegypti] gi|108874611|gb|EAT38836.1| AAEL009320-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|91077066|ref|XP_969171.1| PREDICTED: similar to chaperonin [Tribolium castaneum] gi|270002029|gb|EEZ98476.1| hypothetical protein TcasGA2_TC000969 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307207508|gb|EFN85211.1| T-complex protein 1 subunit alpha [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|158291637|ref|XP_313154.4| AGAP004238-PA [Anopheles gambiae str. PEST] gi|157017642|gb|EAA08611.4| AGAP004238-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|66560172|ref|XP_392660.2| PREDICTED: t-complex protein 1 subunit alpha-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350404950|ref|XP_003487270.1| PREDICTED: T-complex protein 1 subunit alpha-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380011108|ref|XP_003689654.1| PREDICTED: T-complex protein 1 subunit alpha-like [Apis florea] Back     alignment and taxonomy information
>gi|340713325|ref|XP_003395195.1| PREDICTED: t-complex protein 1 subunit alpha-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
FB|FBgn0003676 557 T-cp1 "Tcp1-like" [Drosophila 1.0 0.730 0.798 8.2e-170
UNIPROTKB|F1P5K7 564 TCP1 "T-complex protein 1 subu 0.997 0.719 0.758 4e-161
ZFIN|ZDB-GENE-990714-24 558 tcp1 "t-complex polypeptide 1" 1.0 0.729 0.751 2.2e-160
UNIPROTKB|E7ERF2433 TCP1 "T-complex protein 1 subu 1.0 0.939 0.751 9.6e-160
UNIPROTKB|P17987 556 TCP1 "T-complex protein 1 subu 1.0 0.732 0.751 9.6e-160
RGD|3832 556 Tcp1 "t-complex 1" [Rattus nor 1.0 0.732 0.754 9.6e-160
UNIPROTKB|E2R0L9 556 TCP1 "T-complex protein 1 subu 1.0 0.732 0.751 1.2e-159
UNIPROTKB|F1SB63 556 TCP1 "T-complex protein 1 subu 1.0 0.732 0.754 1.2e-159
UNIPROTKB|G5E531 556 TCP1 "T-complex protein 1 subu 1.0 0.732 0.754 1.6e-159
UNIPROTKB|Q32L40 556 TCP1 "T-complex protein 1 subu 1.0 0.732 0.754 1.6e-159
FB|FBgn0003676 T-cp1 "Tcp1-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1651 (586.2 bits), Expect = 8.2e-170, P = 8.2e-170
 Identities = 325/407 (79%), Positives = 361/407 (88%)

Query:     1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
             MAA +I+NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAA+VLVELAQLQ
Sbjct:    26 MAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQ 85

Query:    61 DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
             DEEVGDGTTSVVI+AAELLKNADELVKQKIHPTS+ISGYR+ACKEACKYI + LT  VDE
Sbjct:    86 DEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDE 145

Query:   121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
             LG++ LIN AKTSMSSK+IG D  FF+ MVVDAAQ++KIT+  G   Y IKAIN+LKAHG
Sbjct:   146 LGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAINVLKAHG 205

Query:   181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
             KSARESVL+ GYALNCT+ASQ M KKI NAKIACLDFSLQK KMK+GV+VL+NDP+KL+ 
Sbjct:   206 KSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKMGVQVLINDPDKLEA 265

Query:   241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
             IRARE DITKERIN IL TG NV+LVSGG+DDLC+KYFVEAGAMAVRRVKK DLK IAKA
Sbjct:   266 IRARELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRVKKSDLKIIAKA 325

Query:   301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
             TGA+F+TSL+NM+GEESF+AS +GEAAEV Q ++CDDELILI G KAR AASIILRGPND
Sbjct:   326 TGAAFITSLTNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPND 385

Query:   361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
             FYCDEMERS+HDALCVVKRVLESK +          LSIYLENFAT+
Sbjct:   386 FYCDEMERSVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATS 432
GO:0005832 "chaperonin-containing T-complex" evidence=ISS
GO:0051082 "unfolded protein binding" evidence=ISS
GO:0006457 "protein folding" evidence=ISS;NAS
GO:0005524 "ATP binding" evidence=IEA;NAS
GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=NAS
GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|F1P5K7 TCP1 "T-complex protein 1 subunit alpha" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990714-24 tcp1 "t-complex polypeptide 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E7ERF2 TCP1 "T-complex protein 1 subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P17987 TCP1 "T-complex protein 1 subunit alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3832 Tcp1 "t-complex 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0L9 TCP1 "T-complex protein 1 subunit alpha" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SB63 TCP1 "T-complex protein 1 subunit alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G5E531 TCP1 "T-complex protein 1 subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32L40 TCP1 "T-complex protein 1 subunit alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P18279TCPA_CRIGRNo assigned EC number0.77641.00.7320yesN/A
Q4R5G2TCPA_MACFANo assigned EC number0.77141.00.7320N/AN/A
P41988TCPA_CAEELNo assigned EC number0.72900.99500.7377yesN/A
Q55BM4TCPA_DICDINo assigned EC number0.62160.99750.7408yesN/A
Q9V2T5THSA_SULACNo assigned EC number0.39750.98520.7186yesN/A
O94501TCPA_SCHPONo assigned EC number0.69281.00.7320yesN/A
Q32L40TCPA_BOVINNo assigned EC number0.77641.00.7320yesN/A
Q52500THSB_PYRKONo assigned EC number0.39550.97050.7234yesN/A
P11983TCPA_MOUSENo assigned EC number0.75921.00.7320yesN/A
P48424THSA_THEACNo assigned EC number0.39160.97290.7266yesN/A
P12612TCPA_YEASTNo assigned EC number0.65281.00.7280yesN/A
P12613TCPA_DROMENo assigned EC number0.82061.00.7307yesN/A
O28045THSA_ARCFUNo assigned EC number0.40340.97540.7284yesN/A
P17987TCPA_HUMANNo assigned EC number0.77391.00.7320yesN/A
O24734THSA_SULTONo assigned EC number0.40090.98520.7173yesN/A
Q9V2S9THSA_SULSONo assigned EC number0.38880.98520.7173yesN/A
Q9V2Q7THS_PYRABNo assigned EC number0.39500.97540.7218yesN/A
P28480TCPA_RATNo assigned EC number0.77641.00.7320yesN/A
Q9W790TCPA_PALPANo assigned EC number0.78070.99750.7262N/AN/A
Q9HN70THSA_HALSANo assigned EC number0.35380.96560.6992yesN/A
P28769TCPA_ARATHNo assigned EC number0.66331.00.7467yesN/A
O26885THSB_METTHNo assigned EC number0.37830.96560.7304yesN/A
O57762THS_PYRHONo assigned EC number0.40240.97540.7231yesN/A
O30561THS1_HALVDNo assigned EC number0.37430.96800.7035yesN/A
Q9XT06TCPA_MONDONo assigned EC number0.76901.00.7307yesN/A
Q9YDK6THSA_AERPENo assigned EC number0.41070.98280.7220yesN/A
Q8SSC9TCPA_ENCCUNo assigned EC number0.48500.98030.7388yesN/A
P50016THS_METKANo assigned EC number0.39250.97540.7284yesN/A
Q58405THS_METJANo assigned EC number0.39310.97540.7324yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 0.0
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-144
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-123
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-122
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-113
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-111
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-105
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 9e-94
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 3e-92
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 9e-86
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 6e-83
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 9e-83
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-81
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-81
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-75
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 8e-75
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 3e-69
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 7e-65
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 4e-63
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-62
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-58
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 5e-58
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 4e-15
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 2e-09
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 5e-08
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-06
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 1e-06
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 3e-06
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-05
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 3e-05
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 5e-05
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 8e-05
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.001
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information 
 Score =  768 bits (1986), Expect = 0.0
 Identities = 313/407 (76%), Positives = 357/407 (87%)

Query: 1   MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
            AA AIANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA++LVELAQLQ
Sbjct: 15  TAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQ 74

Query: 61  DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
           D+EVGDGTTSVVI+AAELLK A+ELVKQKIHPT++ISGYRLACKEA KYI++ L+ISVD 
Sbjct: 75  DKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDN 134

Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
           LGKE LIN AKTSMSSK+IG D +FFA MVVDA  A+K T + G   YPIKA+N+LKAHG
Sbjct: 135 LGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHG 194

Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
           KSA+ES LV GYALNCT ASQ M  ++ NAKIACLDF+LQK KMKLGV+V+V DPEKL+ 
Sbjct: 195 KSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEK 254

Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
           IR RESDITKERI KILA GANV+L +GGIDD+CLKYFVEAGAMAVRRVKK DL+RIAKA
Sbjct: 255 IRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKA 314

Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
           TGA+ +++L+N+EGEE+F+ S LGEA EVVQ ++ DDELILI G K R++ASIILRG ND
Sbjct: 315 TGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGAND 374

Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
           F  DEMERS+HDALCVVKR LES ++V GGGAVE ALSIYLENFATT
Sbjct: 375 FMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATT 421

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 527
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
KOG0361|consensus 543 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358|consensus534 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0360|consensus 545 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0363|consensus 527 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0364|consensus 527 100.0
KOG0362|consensus 537 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
KOG0359|consensus520 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0357|consensus 400 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0356|consensus 550 100.0
KOG0230|consensus 1598 99.95
PF0257994 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofac 80.12
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information 
Probab=100.00  E-value=2.1e-89  Score=701.06  Aligned_cols=399  Identities=41%  Similarity=0.656  Sum_probs=384.6

Q ss_pred             ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917          1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK   80 (407)
Q Consensus         1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~   80 (407)
                      .||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++||+
T Consensus        23 ~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~  102 (519)
T TIGR02339        23 AAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLE  102 (519)
T ss_pred             HHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHhhccCCCC-CCchHHHHHHHHHHHHHhcc
Q psy14917         81 NADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDELGKECLINAAKTSMSSKLI-GPDDNFFATMVVDAAQAIKI  159 (407)
Q Consensus        81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~l~~i~~t~l~sk~~-~~~~~~ls~l~v~a~~~v~~  159 (407)
                      ++.+|+++|+||+.|++||+.|++.++++|+++ +++++..+++.|.++|+|+++||+. +.+.++|++++++|+..+++
T Consensus       103 ~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~  181 (519)
T TIGR02339       103 KAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEI-ATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAE  181 (519)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHh-ccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999 9998767789999999999999999 78999999999999999986


Q ss_pred             cccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917        160 TEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD  239 (407)
Q Consensus       160 ~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~  239 (407)
                      ..++|...+|+++|++++++||+++||++++|++|++++.+++|++.++||||++++++||+++++.++++.+++++++.
T Consensus       182 ~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~  261 (519)
T TIGR02339       182 KRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIK  261 (519)
T ss_pred             hccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccceEEEECCHHHHH
Confidence            43234445888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917        240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE  319 (407)
Q Consensus       240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~  319 (407)
                      ++.++|++++++++++|++.|+++|+++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.+   
T Consensus       262 ~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~~~---  338 (519)
T TIGR02339       262 KFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVSSIKEITESD---  338 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeCchhhCChhh---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877   


Q ss_pred             CCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy14917        320 ASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSI  399 (407)
Q Consensus       320 ~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~  399 (407)
                         +|+|+.|+++++|+++|++|++|+++..|||+||||++.+++|+||+++||++++++++++|++||||||+|++||+
T Consensus       339 ---LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~  415 (519)
T TIGR02339       339 ---LGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELAL  415 (519)
T ss_pred             ---ccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhc
Q psy14917        400 YLENFAT  406 (407)
Q Consensus       400 ~l~~~a~  406 (407)
                      +|+++++
T Consensus       416 ~l~~~~~  422 (519)
T TIGR02339       416 RLRSYAR  422 (519)
T ss_pred             HHHHHhh
Confidence            9998864

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>KOG0361|consensus Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0356|consensus Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-150
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 1e-72
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 5e-72
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-71
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 1e-70
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 5e-70
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 6e-70
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 8e-68
3izh_A513 Mm-Cpn D386a With Atp Length = 513 9e-68
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 3e-67
3izi_A513 Mm-Cpn Rls With Atp Length = 513 3e-67
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-62
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-62
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 4e-62
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-61
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-57
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 2e-55
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-53
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-53
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-53
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-51
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-50
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-50
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-45
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-44
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-38
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-38
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-34
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-34
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-33
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 2e-20
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 3e-20
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 2e-12
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-07
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-07
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 1e-05
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-05
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 1e-05
1oel_A 547 Conformational Variability In The Refined Structure 1e-05
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-05
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 1e-05
1ss8_A 524 Groel Length = 524 1e-05
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 2e-05
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 3e-05
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 3e-05
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 3e-05
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 3e-05
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 3e-05
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 3e-05
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 3e-05
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/407 (75%), Positives = 353/407 (86%)
Query: 1   MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
           MAA++IANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA+VL ELA LQ
Sbjct: 17  MAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQ 76
Query: 61  DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
           D+EVGDGTTSVVI+AAELLKNADELVKQKIHPTSVISGYRLACKEA +YI + L I+ DE
Sbjct: 77  DKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDE 136
Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
           LG++CLINAAKTSMSSK+IG + +FFA +VVDA  AIK T+  G   YP+ +IN+LKAHG
Sbjct: 137 LGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHG 196
Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
           +S  ES+L+ GYALNC V SQ M K+I NAKIACLDFSLQK KMKLGV+V++ DPEKLD 
Sbjct: 197 RSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 256
Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
           IR RESDITKERI KILATGANVIL +GGIDD+CLKYFVEAGAMAVRRV K DLKRIAKA
Sbjct: 257 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 316
Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
           +GA+ L++L+N+EGEE+FEAS LG+A EVVQ ++CDDELILI   KART+AS+ILRG ND
Sbjct: 317 SGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGAND 376
Query: 361 FYCDEMERSIHDALCVVKRVLESKNLXXXXXXXXXXLSIYLENFATT 407
           F CDEMERS+HDALCVVKRVLESK++          LSIYLEN+AT+
Sbjct: 377 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATS 423
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 0.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-161
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 2e-65
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 2e-59
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 2e-04
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 2e-04
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 2e-04
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-04
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
 Score =  580 bits (1497), Expect = 0.0
 Identities = 316/407 (77%), Positives = 362/407 (88%)

Query: 1   MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQ 60
           MAA++IANIVKSSLGPVGLDKMLVDDIGDVT+TNDGATIL+LLEVEHPAA+VL ELA LQ
Sbjct: 17  MAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQ 76

Query: 61  DEEVGDGTTSVVIVAAELLKNADELVKQKIHPTSVISGYRLACKEACKYIQQQLTISVDE 120
           D+EVGDGTTSVVI+AAELLKNADELVKQKIHPTSVISGYRLACKEA +YI + L I+ DE
Sbjct: 77  DKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDE 136

Query: 121 LGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKITEKSGNVTYPIKAINLLKAHG 180
           LG++CLINAAKTSMSSK+IG + +FFA +VVDA  AIK T+  G   YP+ +IN+LKAHG
Sbjct: 137 LGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHG 196

Query: 181 KSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDG 240
           +S  ES+L+ GYALNC V SQ M K+I NAKIACLDFSLQK KMKLGV+V++ DPEKLD 
Sbjct: 197 RSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 256

Query: 241 IRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKA 300
           IR RESDITKERI KILATGANVIL +GGIDD+CLKYFVEAGAMAVRRV K DLKRIAKA
Sbjct: 257 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 316

Query: 301 TGASFLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPND 360
           +GA+ L++L+N+EGEE+FEAS LG+A EVVQ ++CDDELILI   KART+AS+ILRG ND
Sbjct: 317 SGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGAND 376

Query: 361 FYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSIYLENFATT 407
           F CDEMERS+HDALCVVKRVLESK++V GGGAVEAALSIYLEN+AT+
Sbjct: 377 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATS 423
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.09
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.02
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 98.93
1o13_A136 Probable NIFB protein; ribonuclease H-like motif f 82.39
1eo1_A124 Hypothetical protein MTH1175; mixed A/B protein, m 82.2
2yx6_A121 Hypothetical protein PH0822; structural genomics, 81.52
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=3.9e-95  Score=741.05  Aligned_cols=405  Identities=78%  Similarity=1.146  Sum_probs=388.8

Q ss_pred             ChHHHHHHHhhhcCCCCCCceEEEcCCCCeEEecCHHHHHhhccccChHHHHHHHHHHhhhhhcCCChhHHHHHHHHHHH
Q psy14917          1 MAASAIANIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAARVLVELAQLQDEEVGDGTTSVVIVAAELLK   80 (407)
Q Consensus         1 ~a~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt~~vlL~~~ll~   80 (407)
                      +||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||||||++||+++||+
T Consensus        17 ~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GDGTTtvvvLA~eLL~   96 (529)
T 3iyg_A           17 MAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLK   96 (529)
T ss_pred             HHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hccccCCCCCHHHHHHHHHhhccCCCCCCchHHHHHHHHHHHHHhcc
Q psy14917         81 NADELVKQKIHPTSVISGYRLACKEACKYIQQ-QLTISVDELGKECLINAAKTSMSSKLIGPDDNFFATMVVDAAQAIKI  159 (407)
Q Consensus        81 ~~~~li~~gi~p~~I~~~~~~a~~~~~~~l~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~v~a~~~v~~  159 (407)
                      ++.+++++|+||+.|++||+.|++.++++|++ + +++++..+++.|.++|+|+++||+.++|+++|++++++|+.++++
T Consensus        97 ~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~-s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~i~~livdAv~~V~~  175 (529)
T 3iyg_A           97 NADELVKQKIHPTSVISGYRLACKEAVRYISENL-IINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKY  175 (529)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999 7 999876789999999999999999999999999999999999985


Q ss_pred             cccCCCccccCCceEEEEcCCCCCCCceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHH
Q psy14917        160 TEKSGNVTYPIKAINLLKAHGKSARESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLD  239 (407)
Q Consensus       160 ~~~~~~~~~~~~~I~i~~~~G~~~~dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~  239 (407)
                      ...+|...+|+++|+|++++|+++.||++++|++|++++.+++||++++||||++++++|++++++.++++.++++++++
T Consensus       176 ~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~  255 (529)
T 3iyg_A          176 TDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLD  255 (529)
T ss_pred             hccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCcccccccCCceEEeCCHHHHH
Confidence            43334445788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccC
Q psy14917        240 GIRARESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFE  319 (407)
Q Consensus       240 ~~~~~E~~~l~~~v~~i~~~~~~lVi~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~  319 (407)
                      .+.++|++++++++++|++.|+||||++++|++.+++||.++||++++++++++|+|||++|||+++++++++++.+++.
T Consensus       256 ~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~iv~~~~~l~~~e~~~  335 (529)
T 3iyg_A          256 QIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFE  335 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhCCeeecchhcccchhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887644566


Q ss_pred             CCCceeeeeEEEEEecCeeEEEEECCCCCCeEEEEEeCCChhhHHHHHHHHHHHHHHHHHHhcCCeEEeCCCHHHHHHHH
Q psy14917        320 ASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRGPNDFYCDEMERSIHDALCVVKRVLESKNLVAGGGAVEAALSI  399 (407)
Q Consensus       320 ~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrg~~~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGG~~E~~la~  399 (407)
                      +.++|+|+.|+++++|+++|++|++|+++++|||+|||+++++++|.||+++||++++|+++++|++||||||+|++||+
T Consensus       336 ~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls~  415 (529)
T 3iyg_A          336 ASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSI  415 (529)
T ss_pred             hhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCcHHHHHHHH
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhc
Q psy14917        400 YLENFAT  406 (407)
Q Consensus       400 ~l~~~a~  406 (407)
                      +|+++|+
T Consensus       416 ~L~~~~~  422 (529)
T 3iyg_A          416 YLENYAT  422 (529)
T ss_pred             HHHHHhh
Confidence            9999985
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A Back     alignment and structure
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1 Back     alignment and structure
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 7e-42
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 1e-38
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 4e-37
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 5e-36
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-32
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-29
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 7e-24
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-18
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-17
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 9e-17
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-16
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 1e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-13
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 9e-09
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  143 bits (361), Expect = 7e-42
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 5/173 (2%)

Query: 185 ESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRAR 244
           +S +++G  +N  V    M++ I N +I  LD SL+  K +   ++ +   E    I   
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60

Query: 245 ESDITKERINKILATGANVILVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGAS 304
           E +   +    I+    +V++   GI DL   Y + A   A+RRV+K D  RIA+A GA 
Sbjct: 61  EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120

Query: 305 FLTSLSNMEGEESFEASSLGEAAEVVQTQVCDDELILINGPKARTAASIILRG 357
            ++    +  ++    + L E       ++ D+    I   K   A +I+LRG
Sbjct: 121 IVSRPEELREDDVGTGAGLLE-----IKKIGDEYFTFITDCKDPKACTILLRG 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.97
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.96
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.93
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.9
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.83
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.74
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.74
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.68
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.32
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.08
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 98.99
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.99
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 96.08
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 96.02
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 95.32
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 93.98
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 91.75
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 90.92
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 84.14
d1eo1a_124 Hypothetical protein MTH1175 {Archaeon Methanobact 82.22
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=100.00  E-value=1.3e-38  Score=275.44  Aligned_cols=167  Identities=28%  Similarity=0.452  Sum_probs=148.6

Q ss_pred             CceeEeeEEEecccccccccccccCceEEEEeecccccccccCeEEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Q psy14917        185 ESVLVQGYALNCTVASQAMKKKITNAKIACLDFSLQKAKMKLGVEVLVNDPEKLDGIRARESDITKERINKILATGANVI  264 (407)
Q Consensus       185 dS~li~G~v~~~~~~~~~~~~~~~~~kI~l~~~~L~~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lV  264 (407)
                      ||++++|++++++++++.||+.++||||++++++|++++++.++++.++++++++.++++|++++++++++|.++|||+|
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv   80 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV   80 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHHHHHHHHHcCceEEEecChHHHHHHHHHhCCeeccccCCCCCccccCCCCcee-eeeEEEEEecCeeEEEEE
Q psy14917        265 LVSGGIDDLCLKYFVEAGAMAVRRVKKVDLKRIAKATGASFLTSLSNMEGEESFEASSLGE-AAEVVQTQVCDDELILIN  343 (407)
Q Consensus       265 i~~~~I~~~al~~l~~~~I~~i~~v~~~~l~~ia~~tGa~ii~~~~~l~~~~~~~~~~lG~-~~~v~~~~~g~~~~~~~~  343 (407)
                      +|+++||+.+++||.++||++++|+++++|+|||++|||+++++++++++++      +|+ |+.+++..+|+++|++|+
T Consensus        81 ~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~------lG~~~~~~~~~~~~~~~~~~~~  154 (168)
T d1gmla_          81 ITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDD------VGTGAGLLEIKKIGDEYFTFIT  154 (168)
T ss_dssp             EESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGG------SBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCccc------ccccccEEEEEEECCeEEEEEE
Confidence            9999999999999999999999999999999999999999999999999988      998 566777889999999999


Q ss_pred             CCCCCCeEEEEEeC
Q psy14917        344 GPKARTAASIILRG  357 (407)
Q Consensus       344 ~~~~~~~~TIllrg  357 (407)
                      +|+++.+|||+|||
T Consensus       155 ~~~~~~~~TIllRG  168 (168)
T d1gmla_         155 DCKDPKACTILLRG  168 (168)
T ss_dssp             EESSTTSCEEEEEC
T ss_pred             ecCCCCEEEEEEeC
Confidence            99999999999998
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure