Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value
Query 106
pfam02799 190
pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoy
4e-62
COG5092 451
COG5092, NMT1, N-myristoyl transferase [Lipid meta
6e-28
>gnl|CDD|202401 pfam02799, NMT_C, Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
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Score = 186 bits (475), Expect = 4e-62
Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
+TD S+Y+LPSTV+ + HK++KAAYSFY + T+ LM DALI AKN GFDVFNAL
Sbjct: 87 ITDFFSFYSLPSTVIGNPKHKTLKAAYSFYYAATSTRLKQLMNDALILAKNLGFDVFNAL 146
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSI--PPNKIGLVL 105
DLM+NK FL LKFG GDG L YYLYN++CP I + +GLVL
Sbjct: 147 DLMDNKLFLEDLKFGPGDGQLNYYLYNYRCPPIMGGISGVGLVL 190
The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. Length = 190
>gnl|CDD|227423 COG5092, NMT1, N-myristoyl transferase [Lipid metabolism]
Back Show alignment and domain information
Score = 104 bits (261), Expect = 6e-28
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 14/108 (12%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFY--------------NVSFKTKWVDLMQDAL 49
+TD S+Y+LP T + ++ +K I+ Y +Y + KT+ +++ DA+
Sbjct: 322 ITDFFSFYSLPFTTIENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAM 381
Query: 50 ITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP 97
I AK EG DVFNAL +M+N FL LKFG GDG L YYLYN+K IP
Sbjct: 382 ILAKVEGCDVFNALTMMDNSLFLADLKFGCGDGFLNYYLYNYKSEEIP 429
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
106
d1rxta2 201
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
9e-55
d1iyka2 227
d.108.1.2 (A:225-451) N-myristoyl transferase, NMT
2e-48
d1iica2 237
d.108.1.2 (A:219-455) N-myristoyl transferase, NMT
2e-47
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]} Length = 201
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Score = 166 bits (423), Expect = 9e-55
Identities = 76/103 (73%), Positives = 87/103 (84%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNAL 63
VTD +S+YTLPST+MNH HKS+KAAYSFYNV +T +DLM DAL+ AK +GFDVFNAL
Sbjct: 99 VTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNAL 158
Query: 64 DLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIPPNKIGLVLQ 106
DLMENK FL LKFGIGDGNLQYYLYNWKCPS+ K+G+VLQ
Sbjct: 159 DLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSMGAEKVGIVLQ 201
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]} Length = 227
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Yeast (Candida albicans) [TaxId: 5476]
Score = 151 bits (384), Expect = 2e-48
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 4 VTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-------FKTKWVDLMQDALITAKNEG 56
+TD SYY LP TV+++ H + AY FY S +K + +L+ DALIT+K G
Sbjct: 104 ITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFG 163
Query: 57 FDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP--------------PNKIG 102
DVFN L +N FL KFG GDG L YYL+N++ + + IG
Sbjct: 164 VDVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIG 223
Query: 103 LVL 105
+VL
Sbjct: 224 VVL 226
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 149 bits (377), Expect = 2e-47
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 30/134 (22%)
Query: 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVS-----------------FKTKWVDL 44
+TD S+Y+LP T++N+ +K + Y +Y + KT+ +L
Sbjct: 103 GKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCEL 162
Query: 45 MQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP------- 97
+ DA I AKN DVFNAL +N FL LKFG GDG L +YL+N++ I
Sbjct: 163 IYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDN 222
Query: 98 ------PNKIGLVL 105
+ +G+V+
Sbjct: 223 SNDIKRRSNVGVVM 236
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 106
d1rxta2 201
N-myristoyl transferase, NMT {Human (Homo sapiens)
100.0
d1iyka2 227
N-myristoyl transferase, NMT {Yeast (Candida albic
100.0
d1iica2 237
N-myristoyl transferase, NMT {Baker's yeast (Sacch
100.0
d2euia1 153
Probable acetyltransferase PA4026 {Pseudomonas aer
80.95
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-56 Score=336.33 Aligned_cols=105 Identities=72% Similarity=1.185 Sum_probs=104.0
Q ss_pred CccceEEEEeecCeeeeecCccceeeeeeeEEEeecCCCHHHHHHHHHHHHHhcCCcEEEeeccccCccccccCCCcccc
Q psy14931 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTKWVDLMQDALITAKNEGFDVFNALDLMENKEFLGPLKFGIGD 81 (106)
Q Consensus 2 ~~itDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~~~~l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~lKF~~Gd 81 (106)
|+||||+|||+|||+|+++++|++++|||+||+++|+++|++||+||||+||+.|||||||||+|||++||++||||+||
T Consensus 97 g~itDf~SFY~lpstvi~~~~~~~l~aAY~fY~~~~~~~l~~Li~Dali~Ak~~~fDVfNaL~i~dN~~fL~~lKFg~Gd 176 (201)
T d1rxta2 97 GEVTDFLSFYTLPSTIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGD 176 (201)
T ss_dssp SCCCCEEEEECCCBCCCSCSSCCCCCBCCCCCEECSSSCTTTHHHHHHHHHHHTTCSBCCCCCCTTHHHHTTTSSCCCCS
T ss_pred CcEeeEEEEEEcchhhhCCcccceeeeEEEEEEeecCCcHHHHHHHHHHHHHHcCCcEEEecchhcCHHHHHHCCCccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeecCCCCCCCCceeEEcC
Q psy14931 82 GNLQYYLYNWKCPSIPPNKIGLVLQ 106 (106)
Q Consensus 82 G~L~YYLyNw~~~~i~~~~vglvl~ 106 (106)
|+|||||||||||+|+|++||+|||
T Consensus 177 G~L~YYLyNw~~~~i~p~~iglvl~ 201 (201)
T d1rxta2 177 GNLQYYLYNWKCPSMGAEKVGIVLQ 201 (201)
T ss_dssp CCCEEEESSCCCCCCCTTTBCCCCC
T ss_pred CcEEEEEEeccCCCCCHHHceEEeC
Confidence 9999999999999999999999997
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=7.9e-54 Score=330.41 Aligned_cols=104 Identities=44% Similarity=0.708 Sum_probs=101.2
Q ss_pred CccceEEEEeecCeeeeecCccceeeeeeeEEEeecCCC-------HHHHHHHHHHHHHhcCCcEEEeeccccCcccccc
Q psy14931 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFKTK-------WVDLMQDALITAKNEGFDVFNALDLMENKEFLGP 74 (106)
Q Consensus 2 ~~itDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~~~~-------l~~L~~daLi~Ak~~gfDVfNaLdim~N~~fL~~ 74 (106)
|+||||+|||+|||+|++|++|++|+|||+||+++++.+ |.+||+||||+||+.|||||||||+|||++||++
T Consensus 102 g~ItDF~SFY~Lpstvi~~~~h~~l~aAY~fY~~~~~~~~~~~k~~l~~Li~Dali~Ak~~~fDVFNaL~~mdN~~fLe~ 181 (227)
T d1iyka2 102 GIITDYFSYYLLPFTVLDNAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYFLKD 181 (227)
T ss_dssp SCEEEEEEEEECCEEESSCSSCSEECEEEEEEEEETTTTSTTHHHHHHHHHHHHHHHHGGGTCSEEEEESCTTGGGTTTT
T ss_pred CcEeEEEEEeeccHHhhCCCccceEEEEEEEEEEeecccchhhhhhHHHHHHHHHHHHHHcCCcEEEcccccccHHHHHH
Confidence 689999999999999999999999999999999999865 9999999999999999999999999999999999
Q ss_pred CCCcccceeeeEEEeecCCCCCC--------------CCceeEEc
Q psy14931 75 LKFGIGDGNLQYYLYNWKCPSIP--------------PNKIGLVL 105 (106)
Q Consensus 75 lKF~~GdG~L~YYLyNw~~~~i~--------------~~~vglvl 105 (106)
|||++|||+|||||||||||+|+ ||+||+||
T Consensus 182 lKFg~GdG~L~YYLyNwr~~~i~gg~~~~~~~~~~~~~s~vG~Vl 226 (227)
T d1iyka2 182 CKFGSGDGFLNYYLFNYRTFPMDGGIDKKTKEVVEDQTSGIGVVL 226 (227)
T ss_dssp TTCEEEEEEEEEEEETCBCCCCCCSBCTTTCCBCTTCCCSEECCC
T ss_pred cCCccCCCcEEEEEEeccCCCccCccccccccccccCCCceeEEe
Confidence 99999999999999999999995 89999998
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-myristoyl transferase, NMT
domain: N-myristoyl transferase, NMT
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-53 Score=330.76 Aligned_cols=104 Identities=40% Similarity=0.725 Sum_probs=100.9
Q ss_pred CccceEEEEeecCeeeeecCccceeeeeeeEEEeecC-----------------CCHHHHHHHHHHHHHhcCCcEEEeec
Q psy14931 2 TSVTDMVSYYTLPSTVMNHEVHKSIKAAYSFYNVSFK-----------------TKWVDLMQDALITAKNEGFDVFNALD 64 (106)
Q Consensus 2 ~~itDf~SFY~lpstvl~~~~~~~l~aAY~~Y~~~~~-----------------~~l~~L~~daLi~Ak~~gfDVfNaLd 64 (106)
|+||||+|||+|||+|+++++|++|+|||+|||++++ ++|.+||+||||+||++|||||||||
T Consensus 103 g~ITDF~SFY~Lpstvi~~~kh~~l~aAY~fYy~~~~~~~~~~~~~~~~~~a~k~~l~~Li~Dali~Ak~~~fDVFNaL~ 182 (237)
T d1iica2 103 GKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALT 182 (237)
T ss_dssp SCEEEEEEEEECCEEECSCSSCSEECEEEEEEEEECTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CcEeeEEEEEecchhhhCCCCcceEEEEEEEEEeeccccccccccchhhhhhhcchHHHHHHHHHHHHHHcCCcEEEecc
Confidence 6899999999999999999999999999999999876 69999999999999999999999999
Q ss_pred cccCccccccCCCcccceeeeEEEeecCCCCCC-------------CCceeEEc
Q psy14931 65 LMENKEFLGPLKFGIGDGNLQYYLYNWKCPSIP-------------PNKIGLVL 105 (106)
Q Consensus 65 im~N~~fL~~lKF~~GdG~L~YYLyNw~~~~i~-------------~~~vglvl 105 (106)
+|||++||++|||++|||+|||||||||||+|+ |++||+||
T Consensus 183 ~mdN~~fLe~lKFg~GdG~L~YYLyNwr~~~i~gg~~~~~~~~~~~~s~vG~Vl 236 (237)
T d1iica2 183 SQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVM 236 (237)
T ss_dssp CTTGGGTTTTTTCEEEEEEEEEEEETEECCCCCBSBCTTSSBCTTTCBCBCCCC
T ss_pred ccccHHHHHHcCCccCCCcEEEEEEeccCCCccCCcCccccccccCccCeeEEe
Confidence 999999999999999999999999999999995 89999998
>d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026 {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Probable acetyltransferase PA4026
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.95 E-value=0.97 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEeeccccCcc---ccccCCCcccceeeeEEE
Q psy14931 42 VDLMQDALITAKNEGFDVFNALDLMENKE---FLGPLKFGIGDGNLQYYL 88 (106)
Q Consensus 42 ~~L~~daLi~Ak~~gfDVfNaLdim~N~~---fL~~lKF~~GdG~L~YYL 88 (106)
..||+-++..||+.|+.-.-+...-+|.. |.++++|..-.-..+|||
T Consensus 97 ~~Ll~~~~~~ak~~g~~~i~l~~~~~N~~a~~~Y~k~GF~~~~~~~~y~l 146 (153)
T d2euia1 97 DHLLQHAKQMARETHAVRMRVSTSVDNEVAQKVYESIGFREDQEFKNYTL 146 (153)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEETTCHHHHHHHHTTTCBCCCSBCCEEE
T ss_pred hHHHHHHhhhHHHhhhccceEEecCCCHHHHHHHHHCCCEEcceEEEEEe
Confidence 57888888899999999888777888864 799999998666677765