Psyllid ID: psy14962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHVLKEW
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEcccccccHHHHHccccccEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHccHHHccccEEEEEccccccccccccccEEEEEcccccccHHHHHHHccccEEEEEEccccccEEEEEEEEcccccEEEEEcccEEEEEEEccccccccccccccccccccccccEEEEEEHHHcccHHHcccHccccHHHHHccccHHccc
Coil and Loop (DISEMBL)
MQQARIIELLEpkiqegakvldigsgsgFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRpdllndgrlhlrcrdgrtgllhqapfdaiylstyvpeipysillqlkpggrlvcgvgksksyhrmtvidrsedgthfQKYEISLENfinplinadeqndnwlyqqsrsedgthFQKYEISLENfinplinadeqndnwlyQQSRNHVLKEW
Flexible Loop (DISEMBL)
MQQARIIEllepkiqeGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRmtvidrsedgTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHVLKEW
Low Complexity Region (SEG)
MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHVLKEW
Disordered region (IsUnstruct)
*****IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQ****DGTHFQKYEISLENFINPLINADEQNDNWLYQ**********
Disordered Region (DISOPRED)
MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINAD*****************************INPLINADEQNDNWLYQQSRN******
Disordered Region (DISEMBL)
MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHVLKEW
Disordered Region (DISPRO)
MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHV****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRNHVLKEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q92047	228	Protein-L-isoaspartate(D-	yes	N/A	0.731	0.692	0.4	3e-29
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.75	0.713	0.378	6e-28
Q5RA89	227	Protein-L-isoaspartate(D-	yes	N/A	0.75	0.713	0.378	6e-28
P22061	227	Protein-L-isoaspartate(D-	yes	N/A	0.75	0.713	0.378	6e-28
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.75	0.713	0.371	8e-28
P23506	227	Protein-L-isoaspartate(D-	yes	N/A	0.75	0.713	0.371	1e-27
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.75	0.713	0.371	1e-27
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.75	0.713	0.371	1e-27
Q5F3N1	228	Protein-L-isoaspartate(D-	yes	N/A	0.638	0.605	0.405	3e-27
Q43209	230	Protein-L-isoaspartate O-	N/A	N/A	0.671	0.630	0.412	2e-24

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL   + EGAK LD+GSGSG +S  F+ +VG TG+V G++H++E  ED+   V 
Sbjct: 65  HAYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVK 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P L+  GR+ L   DGR G   +AP+DAI++    P +P ++L QLKPGGRL+  VG
Sbjct: 125 KDDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQ 162
            +     +   D+ EDG+   K  + +     PL + D+Q
Sbjct: 185 PAGGNQMLEQYDKLEDGSTKMKPLMGV--IYVPLTDKDKQ 222

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K  + +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGSIKMKPLMGV--IYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVK 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPMLLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVK 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPMLLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K  + +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGSVKMKPLMGV--IYVPLTDKEKQWSRW 226

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 87/138 (63%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  F+ +VG  G+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVK 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGT 140
            +     +   D+ EDG+
Sbjct: 185 PAGGNQMLEQYDKLEDGS 202

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL+  +Q G   LD+GSGSG+++  FA +VG  GR  G+EH+ E    + E V 
Sbjct: 70  HATCLELLKDYLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVVASTENVE 129

Query: 63  R-IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121
           R     L+ DG L     DGR G    AP+DAI++    PEIP  +L QLKPGGR+V  V
Sbjct: 130 RSAAAALMKDGSLSFHVSDGRLGWPDAAPYDAIHVGAAAPEIPRPLLEQLKPGGRMVIPV 189

Query: 122 GKSKSYHRMTVIDRSEDGTHFQKYEISL 149
           G       + VID+S DG+   + + S+
Sbjct: 190 GTYS--QDLQVIDKSADGSTSVRNDASV 215

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
18859221	228	protein-L-isoaspartate(D-aspartate) O-me	0.731	0.692	0.4	1e-27
410898491	249	PREDICTED: protein-L-isoaspartate(D-aspa	0.657	0.570	0.436	3e-27
348517552	228	PREDICTED: protein-L-isoaspartate(D-aspa	0.731	0.692	0.393	5e-27
344264607	285	PREDICTED: protein-L-isoaspartate(D-aspa	0.75	0.568	0.378	1e-26
432112797	196	Protein-L-isoaspartate(D-aspartate) O-me	0.75	0.826	0.378	2e-26
116248579	227	RecName: Full=Protein-L-isoaspartate(D-a	0.75	0.713	0.378	3e-26
14250587	227	Protein-L-isoaspartate (D-aspartate) O-m	0.75	0.713	0.378	3e-26
410916985	269	PREDICTED: protein-L-isoaspartate(D-aspa	0.75	0.602	0.384	3e-26
116248580	227	RecName: Full=Protein-L-isoaspartate(D-a	0.75	0.713	0.378	3e-26
317373537	227	RecName: Full=Protein-L-isoaspartate(D-a	0.75	0.713	0.378	3e-26

>gi|18859221|ref|NP_571540.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Danio rerio] gi|2499566|sp|Q92047.3|PIMT_DANRE RecName: Full=Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Short=PIMT; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl/D-aspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase gi|1255009|gb|AAA96020.1| L-isoaspartate (D-aspartate) O-methyltransferase [Danio rerio] gi|50368935|gb|AAH75735.1| L-isoaspartyl protein carboxyl methyltransferase [Danio rerio]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL   + EGAK LD+GSGSG +S  F+ +VG TG+V G++H++E  ED+   V 
Sbjct: 65  HAYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVK 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P L+  GR+ L   DGR G   +AP+DAI++    P +P ++L QLKPGGRL+  VG
Sbjct: 125 KDDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQ 162
            +     +   D+ EDG+   K  + +     PL + D+Q
Sbjct: 185 PAGGNQMLEQYDKLEDGSTKMKPLMGV--IYVPLTDKDKQ 222

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410898491|ref|XP_003962731.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Takifugu rubripes]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 84/142 (59%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  K+ EGA  LD+GSGSG+++  FA + G TGRV GVEH+ +  E + + V 
Sbjct: 86  HAHALELLSVKLTEGAAALDVGSGSGYLTACFARMTGPTGRVVGVEHISQLVEMSIKNVQ 145

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
              P+LL  GR+ L   DGR G    AP+DAI++    P +P S+L QLKPGGRL+  VG
Sbjct: 146 ADDPELLTSGRIRLVVGDGRQGFPEGAPYDAIHVGAAAPSVPKSLLAQLKPGGRLILPVG 205

Query: 123 KSKSYHRMTVIDRSEDGTHFQK 144
            +     +   D+  DGT   K
Sbjct: 206 PTSGSQMLMQYDQQRDGTFITK 227

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348517552|ref|XP_003446297.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Oreochromis niloticus]

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG +S  FA +VG  G+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLHDQLYEGAKALDVGSGSGILSVCFARMVGPKGKVIGIDHIKELVDDSINNVK 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P L+  GR+ L   DGR G   +AP+DAI++    P +P ++L QLKPGGRL+  VG
Sbjct: 125 KDDPSLITSGRVKLIVGDGRLGYTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQ 162
            +     +   D+ EDG+   K  + +     PL + D+Q
Sbjct: 185 PAGGNQMLEQYDKMEDGSTKMKPLMGV--IYVPLTDKDKQ 222

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344264607|ref|XP_003404383.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Loxodonta africana]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V 
Sbjct: 123 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVR 182

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+HL   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 183 KDDPMLLSSGRVHLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 242

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 243 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 284

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432112797|gb|ELK35395.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Myotis davidii]

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG +S  FA +VG +G+V G++H++E  +D+   V 
Sbjct: 34  HAYALELLFDQLHEGAKALDVGSGSGILSACFARMVGASGKVVGIDHIKELVDDSINNVR 93

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 94  KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 153

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K  + +     PL + ++Q   W
Sbjct: 154 PAGGNQMLEQYDKLQDGSVKMKPLMGV--IYVPLTDKEKQWSRW 195

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116248579|sp|Q4R5H0.3|PIMT_MACFA RecName: Full=Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Short=PIMT; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl/D-aspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|14250587|gb|AAH08748.1| Protein-L-isoaspartate (D-aspartate) O-methyltransferase [Homo sapiens] gi|343959246|dbj|BAK63480.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Pan troglodytes]

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K  + +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGSIKMKPLMGV--IYVPLTDKEKQWSRW 226

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410916985|ref|XP_003971967.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Takifugu rubripes]

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG +S  FA +VG  G+V G++H++E  +D+   V 
Sbjct: 107 HAYALELLHDQLYEGAKALDVGSGSGILSVCFARMVGAKGKVIGIDHIKELVDDSISNVK 166

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P L+  GR+ L   DGR G   +AP+DAI++    P +P ++L QLKPGGRL+  VG
Sbjct: 167 KDDPSLITSGRVKLIVGDGRMGHGEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVG 226

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ EDG+   K  + +     PL + ++Q   W
Sbjct: 227 PAGGNQMLEQYDKLEDGSTKMKPLMGV--IYVPLTDREKQWSRW 268

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116248580|sp|Q5RA89.3|PIMT_PONAB RecName: Full=Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Short=PIMT; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl/D-aspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K +  +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGS--VKMKPLMGVIYVPLTDKEKQWSRW 226

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|317373537|sp|P22061.4|PIMT_HUMAN RecName: Full=Protein-L-isoaspartate(D-aspartate) O-methyltransferase; Short=PIMT; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl/D-aspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase gi|1332399|dbj|BAA05028.1| PIMT isozyme I [Homo sapiens] gi|1332403|dbj|BAA05030.1| PIMT isozyme I [Homo sapiens] gi|158260471|dbj|BAF82413.1| unnamed protein product [Homo sapiens]

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 65  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR 124

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 125 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 184

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K  + +     PL + ++Q   W
Sbjct: 185 PAGGNQMLEQYDKLQDGSIKMKPLMGV--IYVPLTDKEKQWSRW 226

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
ZFIN|ZDB-GENE-990415-134	266	pcmt "l-isoaspartyl protein ca	0.726	0.590	0.402	1e-27
UNIPROTKB|B7Z972	192	PCMT1 "Protein-L-isoaspartate	0.745	0.838	0.380	4.5e-27
UNIPROTKB|J3KP72	285	PCMT1 "Protein-L-isoaspartate	0.745	0.564	0.380	4.5e-27
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.745	0.709	0.380	4.5e-27
UNIPROTKB|J9JIK8	208	PCMT1 "Protein-L-isoaspartate	0.745	0.774	0.374	1.2e-26
UNIPROTKB|P80895	227	PCMT1 "Protein-L-isoaspartate(	0.745	0.709	0.374	1.2e-26
MGI|MGI:97502	227	Pcmt1 "protein-L-isoaspartate	0.745	0.709	0.374	1.2e-26
RGD|3268	227	Pcmt1 "protein-L-isoaspartate	0.745	0.709	0.374	1.2e-26
UNIPROTKB|P22062	227	Pcmt1 "Protein-L-isoaspartate(	0.745	0.709	0.374	1.2e-26
UNIPROTKB|H7BY58	286	PCMT1 "Protein-L-isoaspartate	0.634	0.479	0.416	1.5e-26

ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 64/159 (40%), Positives = 97/159 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL   + EGAK LD+GSGSG +S  F+ +VG TG+V G++H++E  ED+   V +
Sbjct:   104 AYALELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKK 163

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P L+  GR+ L   DGR G   +AP+DAI++    P +P ++L QLKPGGRL+  VG 
Sbjct:   164 DDPSLITSGRIKLIVGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGP 223

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQ 162
             +     +   D+ EDG+   K  + +  ++ PL + D+Q
Sbjct:   224 AGGNQMLEQYDKLEDGSTKMKPLMGVI-YV-PLTDKDKQ 260

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/163 (38%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V +
Sbjct:    31 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 90

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:    91 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 150

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   151 AGGNQMLEQYDKLQDGSIKMKPLMGVI-YV-PLTDKEKQWSRW 191

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|J3KP72 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/163 (38%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V +
Sbjct:   124 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 183

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   184 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 243

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   244 AGGNQMLEQYDKLQDGSIKMKPLMGVI-YV-PLTDKEKQWSRW 284

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IEA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/163 (38%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V +
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 125

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   126 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   186 AGGNQMLEQYDKLQDGSIKMKPLMGVI-YV-PLTDKEKQWSRW 226

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 61/163 (37%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V +
Sbjct:    47 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRK 106

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   107 DDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 166

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   167 AGGNQMLEQYDKLQDGSVKMKPLMGVI-YV-PLTDKEKQWSRW 207

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 61/163 (37%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V +
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRK 125

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   126 DDPMLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   186 AGGNQMLEQYDKLQDGSVKMKPLMGVI-YV-PLTDKEKQWSRW 226

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 61/163 (37%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V +
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKK 125

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   126 DDPMLLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   186 AGGNQMLEQYDKLQDGSVKMKPLMGVI-YV-PLTDKEKQWSRW 226

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006479 "protein methylation" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=ISO

GO:0046500 "S-adenosylmethionine metabolic process" evidence=ISO

RGD|3268 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 61/163 (37%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V +
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKK 125

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   126 DDPMLLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   186 AGGNQMLEQYDKLQDGSVKMKPLMGVI-YV-PLTDKEKQWSRW 226

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA;ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006479 "protein methylation" evidence=ISO

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IDA

GO:0046500 "S-adenosylmethionine metabolic process" evidence=IDA

UNIPROTKB|P22062 Pcmt1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 61/163 (37%), Positives = 100/163 (61%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG +G+V G++H++E  +D+   V +
Sbjct:    66 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKK 125

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   126 DDPMLLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 185

Query:   124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
             +     +   D+ +DG+   K  + +  ++ PL + ++Q   W
Sbjct:   186 AGGNQMLEQYDKLQDGSVKMKPLMGVI-YV-PLTDKEKQWSRW 226

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|H7BY58 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 57/137 (41%), Positives = 88/137 (64%)

Query:     4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V +
Sbjct:   124 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 183

Query:    64 IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct:   184 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 243

Query:   124 SKSYHRMTVIDRSEDGT 140
             +     +   D+ +DG+
Sbjct:   244 AGGNQMLEQYDKLQDGS 260

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5CYQ6	PIMT_PELTS	2, ., 1, ., 1, ., 7, 7	0.3167	0.6851	0.6462	yes	N/A
Q5RA89	PIMT_PONAB	2, ., 1, ., 1, ., 7, 7	0.3780	0.75	0.7136	yes	N/A
Q12UV0	PIMT_METBU	2, ., 1, ., 1, ., 7, 7	0.3426	0.6203	0.6600	yes	N/A
A6V1G4	PIMT_PSEA7	2, ., 1, ., 1, ., 7, 7	0.3630	0.6481	0.6635	yes	N/A
O27962	PIMT2_ARCFU	2, ., 1, ., 1, ., 7, 7	0.3475	0.6111	0.6027	yes	N/A
Q42539	PIMT_ARATH	2, ., 1, ., 1, ., 7, 7	0.3851	0.6712	0.6304	yes	N/A
B7V8C3	PIMT_PSEA8	2, ., 1, ., 1, ., 7, 7	0.3630	0.6481	0.6635	yes	N/A
P15246	PIMT_BOVIN	2, ., 1, ., 1, ., 7, 7	0.3719	0.75	0.7136	yes	N/A
Q02R96	PIMT_PSEAB	2, ., 1, ., 1, ., 7, 7	0.3630	0.6481	0.6635	yes	N/A
Q9YDA1	PIMT_AERPE	2, ., 1, ., 1, ., 7, 7	0.3253	0.7268	0.6038	yes	N/A
A7HC32	PIMT1_ANADF	2, ., 1, ., 1, ., 7, 7	0.3028	0.6157	0.6273	yes	N/A
Q92047	PIMT_DANRE	2, ., 1, ., 1, ., 7, 7	0.4	0.7314	0.6929	yes	N/A
P80895	PIMT_PIG	2, ., 1, ., 1, ., 7, 7	0.3719	0.75	0.7136	yes	N/A
P23506	PIMT_MOUSE	2, ., 1, ., 1, ., 7, 7	0.3719	0.75	0.7136	yes	N/A
Q5F3N1	PIMT_CHICK	2, ., 1, ., 1, ., 7, 7	0.4057	0.6388	0.6052	yes	N/A
P22061	PIMT_HUMAN	2, ., 1, ., 1, ., 7, 7	0.3780	0.75	0.7136	yes	N/A
P22062	PIMT_RAT	2, ., 1, ., 1, ., 7, 7	0.3719	0.75	0.7136	yes	N/A
A6H0V1	PIMT_FLAPJ	2, ., 1, ., 1, ., 7, 7	0.3866	0.6296	0.6384	yes	N/A
Q27869	PIMT_DROME	2, ., 1, ., 1, ., 7, 7	0.3028	0.6342	0.6061	yes	N/A
P45683	PIMT_PSEAE	2, ., 1, ., 1, ., 7, 7	0.3630	0.6481	0.6635	yes	N/A
A0LZ51	PIMT_GRAFK	2, ., 1, ., 1, ., 7, 7	0.3552	0.6203	0.6291	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691
4th Layer	2.1.1.77	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	5e-35
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	1e-31
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	3e-24
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	2e-23
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	2e-21
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	5e-19
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	9e-18
TIGR04364	394	TIGR04364, methyltran_FxLD, methyltransferase, FxL	4e-13
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	3e-11
TIGR04188	363	TIGR04188, methyltr_grsp, methyltransferase, ATP-g	1e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	5e-10
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-08
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-06
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	1e-05
pfam08704	309	pfam08704, GCD14, tRNA methyltransferase complex G	2e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	2e-05
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	3e-05
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	8e-05
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	4e-04
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	4e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	5e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	5e-04
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	6e-04
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.001
pfam01269	229	pfam01269, Fibrillarin, Fibrillarin	0.002
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	0.004

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score =  122 bits (309), Expect = 5e-35
 Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 8/143 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A ++ELLE  ++ G +VL+IGSGSG+++  FA +VG+ G V  +EH+ E  E A   + +
Sbjct: 63  AMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK 120

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
           +  +      + +   DGR G    AP+DAI++    PEIP +++ QLK GGRLV  VG 
Sbjct: 121 LGLE-----NVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGP 175

Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
           + +   +   D+  DG+   K  
Sbjct: 176 NGN-QVLQQFDKRNDGSVVIKDL 197

Length = 210

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score =  114 bits (287), Expect = 1e-31
 Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 11/138 (7%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            AR+++LLE K   G +VL+IG+GSG+ + V A LVG   RV  +E + E  E A     
Sbjct: 61  VARMLQLLELK--PGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQA----- 110

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           R   + L    + +R  DG  G   +AP+D I ++   PE+P ++L QLKPGGRLV  VG
Sbjct: 111 RRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170

Query: 123 KSKSYHRMTVIDRSEDGT 140
              +  R+  I +  DG 
Sbjct: 171 SGPA-QRLLRITKDGDGN 187

Length = 209

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 95.3 bits (237), Expect = 3e-24
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A + ELLE  ++ G KVL+IG+GSG+ + V AE+VG+ G V  +E + E    A +   R
Sbjct: 67  AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL---AEKAERR 121

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
           +R   L    + +   DG  G    AP+D IY++   P+IP +++ QLK GG LV  VG+
Sbjct: 122 LRK--LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE 179

Query: 124 SKSY 127
               
Sbjct: 180 YLQV 183

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 93.0 bits (232), Expect = 2e-23
 Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            AR+ ELLE K   G +VL+IG+GSG+ + V A LV    RVF VE ++    +A     
Sbjct: 67  VARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEA----- 116

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           + R   L    + +R  DG  G    APFD I ++   PEIP ++L QLK GG LV  VG
Sbjct: 117 KRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176

Query: 123 KSKSYHRMTVIDRSEDG 139
                  +T + +    
Sbjct: 177 GE-EQQLLTRVRKRGGR 192

Length = 212

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 87.4 bits (217), Expect = 2e-21
 Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 7/116 (6%)

Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
           ELL+ K  EG KVL+IG+GSG+ + V AE+VGK+G+V  +E + E  E A +T+ ++  D
Sbjct: 70  ELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD 127

Query: 68  LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
                 + +   DG  G    AP+D IY++   P+IP  ++ QLK GG +V  VG 
Sbjct: 128 -----NVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGS 178

Length = 212

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 83.0 bits (205), Expect = 5e-19
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 16  EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH 75
           +G +VL+IG G+G+ + V + +VG+ G V  VE+ R+ CE A   V R     L    + 
Sbjct: 80  KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-----LGIENVI 134

Query: 76  LRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
             C DG  G+   AP+D I+++  V E+P +   QLK GGR++
Sbjct: 135 FVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVI 177

Length = 322

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 77.9 bits (192), Expect = 9e-18
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 10/153 (6%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A + EL+EP+   G K+L++G+GSG+ + V AE + + G+V+ VE ++E    A + + R
Sbjct: 62  AMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER 119

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               L   G + +   DG+ GL   APFDAI ++     IP +++ QLK GG LV  V +
Sbjct: 120 ----LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV-E 174

Query: 124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPL 156
                 +  + +  +    +K  I+   F+ PL
Sbjct: 175 EGVGQVLYKVVKRGEK--VEKRAITYVLFV-PL 204

Length = 205

>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
           QA ++E      + G +VL+IGSG G+ + + AELVG +G V  V+       D  +   
Sbjct: 71  QAMMLEQAGV--EPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVD------IDE-DVTD 120

Query: 63  RIRPDLLNDG--RLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV-- 118
           R R  L   G  ++ +   D   G+   AP+D I ++    +IP + L QL PGGRLV  
Sbjct: 121 RARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLVVP 180

Query: 119 ---CGVGKSKSYHR 129
               G+ +S ++ R
Sbjct: 181 LRMRGLTRSIAFER 194

Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           I  G++VL+ G+GSG ++   A  VG  G V   E   +  + A E +      L +  R
Sbjct: 92  ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD--R 147

Query: 74  LHLRCRDGRTGLLHQAPFDAIYLSTYVPE--IPYSILLQLKPGGRLVC 119
           + L+  D R G+  +   DA++L    P   +   +   LKPGG +V 
Sbjct: 148 VTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLE-HVSDALKPGGVVVV 193

Length = 256

>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 27/128 (21%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           AR++E L+  +++G +VL+IG+G+G+ + +    +G    V  VE               
Sbjct: 97  ARMLEALD--VEDGHRVLEIGTGTGYSAALLCHRLG-DDNVTSVE--------------- 138

Query: 64  IRPDLLNDGRLHLR---CR------DGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPG 114
           + P L       L            DG  G   +AP+D I  +  V  +P + L Q +PG
Sbjct: 139 VDPGLAARAASALAAAGYAPTVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPG 198

Query: 115 GRLVCGVG 122
           G ++  + 
Sbjct: 199 GVILTTLS 206

Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 16  EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH 75
            GA+VLDIG G+G ++   A L     RV GV+   E  E A E        L    R+ 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLF-PGARVTGVDLSPEMLELARE-----NAKLALGPRIT 54

Query: 76  LRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
               D    L     FDA+++     ++   +L      LKPGGRLV
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLL-ELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 30/132 (22%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHM----REQC 54
            +AR  ELL    Q G +VLD+G G G  +   A  VG  GRV G+   E M    +E+ 
Sbjct: 7   YRARTFELLAV--QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64

Query: 55  EDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST----YVPEIPYS---I 107
                 V  +R D        L   DG         FDA+  S     ++ +   +   I
Sbjct: 65  AGLGPNVEFVRGDA-----DGLPFPDGS--------FDAVR-SDRVLQHLEDPARALAEI 110

Query: 108 LLQLKPGGRLVC 119
              L+PGGR+V 
Sbjct: 111 ARVLRPGGRVVV 122

Length = 241

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 19  KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC 78
           +VLD+G G+G ++   A   G   RV GV+      E     + R     L    + +  
Sbjct: 1   RVLDLGCGTGALALALASGPGA--RVTGVDISPVALE-----LARKAAAALLADNVEVLK 53

Query: 79  RDGRTGLL-HQAPFDAIYLS---TYVPEIPYSILLQ----LKPGGRLVCGV 121
            D           FD I       ++ E     L +    LKPGG LV  +
Sbjct: 54  GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 17  GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL 76
           G +VLD G+GSG    + A   G   RV GV    E   +A     R         R+ +
Sbjct: 1   GDRVLDPGAGSGAFL-LAAARAGPDARVVGV----ELDPEAAALARRRLALAGLAPRVRV 55

Query: 77  RCRDGR-TGLLHQAPFDAIYLST-YVPEIPY-------------SILLQLKPGGRLVC 119
              D R    L    FD +  +  Y P                 + L  LKPGG LV 
Sbjct: 56  VVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113

This family contains methyltransferase domains. Length = 117

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           ++ G KVLD+G G+G+++ + AE +G    V G++   E  E A     +     L    
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-----KENAKKLGYEN 55

Query: 74  LHLRCRD---GRTGLLHQAPFD------AIYLSTYVPEIPYSILLQLKPGGRLVC 119
           +     D        L    FD       +       ++   I+  LKPGG L+ 
Sbjct: 56  VEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIV 110

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV 47
           +++ G  VLD+GSG GF   + A  VG TG+V GV
Sbjct: 74  ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGV 108

Length = 272

>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           + II +LE  ++ G+ V + G+GSG +S   A  V  TG ++  E   ++ + A E    
Sbjct: 92  SLIIMMLE--LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFRE 149

Query: 64  IRPDLLNDGRLHLRCRDG-RTGLLHQAPFDAIYLSTYVP--EIPYSILLQLKPGGRLVC 119
              D L        C+ G  T + ++A  DA++L    P   IP++       GGRL  
Sbjct: 150 HGLDSLVTVTHRDVCKSGFDTEVSNKA--DAVFLDLPAPWEAIPHAAKALKVEGGRLCS 206

GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Length = 309

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A  +  L P  + G ++ DIG+G+G ++  +A L G +GRV  +    E+ E+A E + R
Sbjct: 24  ALTLSKLRP--RPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAI----ERDEEALELIER 76

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL--STYVPEIPYSILLQLKPGGRLV 118
                     L +   D    L      DAI++     + EI  +   +LKPGGRLV
Sbjct: 77  NA-ARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV 132

Length = 187

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 16/44 (36%), Positives = 31/44 (70%)

Query: 5  RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE 48
          R + L + ++++G  +LDIG G+G ++   + LVG+TG+V+ V+
Sbjct: 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVD 72

Length = 198

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 21  LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD 80
           LD+G G+G ++   A   G   RV GV+   E    A +   R     +      L   D
Sbjct: 1   LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARK---RAPRKFVVGDAEDLPFPD 55

Query: 81  GRTGLLHQAPFDAIYLSTYVPEIPY-SILLQ-----LKPGGRLVC 119
                     FD +  S  +  +P     L+     LKPGG+LV 
Sbjct: 56  ES--------FDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 38/127 (29%)

Query: 12  PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLND 71
             I+ G KVLD+  G+G M+ + A+ VG TG V G++               I   +L  
Sbjct: 47  LGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLD---------------ISESMLEV 90

Query: 72  GRLHLRCRDGRTGLLHQAP----------FDAIYLST---YVPEIP------YSILLQLK 112
            R  L+ +  +                  FDA+ +S     V +I       Y +   LK
Sbjct: 91  AREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRV---LK 147

Query: 113 PGGRLVC 119
           PGGRL+ 
Sbjct: 148 PGGRLLV 154

Length = 238

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 40/133 (30%)

Query: 7   IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
           I+ L  +   G KVLD+  G+G ++   A+ VGKTG V G+        D          
Sbjct: 44  IKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGL--------D-------FSE 86

Query: 67  DLLNDGRLHLRCRDGRTGL-LHQA-----P-----FDAIYLSTY----VPEIPYSILLQ- 110
            +L  GR  LR       +   Q      P     FDA+ ++ +    VP+I  +  L+ 
Sbjct: 87  GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA-FGLRNVPDIDKA--LRE 143

Query: 111 ----LKPGGRLVC 119
               LKPGGRLV 
Sbjct: 144 MYRVLKPGGRLVI 156

Length = 239

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 29/121 (23%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           +Q G   LD+  G+   S   AE VG  G V G+        D  E ++ +    + D  
Sbjct: 43  VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGL--------DFSENMLSVGRQKVKDAG 94

Query: 74  LHLRCRDGRTGLLH----QAP-----FDAIYLSTYVPEIP-YSILLQ-----LKPGGRLV 118
           LH         L+H    + P     FD + +   +  +P Y  +L+     +KPGG++V
Sbjct: 95  LH------NVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

Query: 119 C 119
           C
Sbjct: 149 C 149

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 20/123 (16%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
           R + L + +++ G  + DIG+G+G ++   A LV   GRV+ +E  R    +A + + R 
Sbjct: 8   RALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIE--RN--PEALDLIER- 61

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAP------FDAIYL---STYVPEIPYSILLQLKPGG 115
                N  R  +       G   +AP       DA+++      + EI  ++  +L+PGG
Sbjct: 62  -----NLRRFGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEILEAVERRLRPGG 116

Query: 116 RLV 118
           R+V
Sbjct: 117 RIV 119

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 17/113 (15%)

Query: 16  EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMRIRPDLLNDG 72
            G K LD+  G+G  +   ++  G +G+V G+   E+M ++ E   +   +   + L   
Sbjct: 47  RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGN 106

Query: 73  RLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPY---SILLQLKPGGRLVC 119
              L   D          FD + +S      P+           LKPGGR+VC
Sbjct: 107 AEELPFEDD--------SFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVC 151

Length = 233

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 38.3 bits (86), Expect = 0.001
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           ++  L   +  G  VLDIG G+G ++ + A L G+   V GV+   E    A     R R
Sbjct: 38  LVLRLLRLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALA-----RAR 91

Query: 66  PDLLNDGRLHLRCRDGRTGLLH---QAPFDAIYLSTYVPEIPYSILLQ-----LKPGGRL 117
            +    G +     D   G+L     A FD +     +  +P +  L+     LKPGGRL
Sbjct: 92  AEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRL 151

Query: 118 VCGV 121
           V   
Sbjct: 152 VLSD 155

Length = 257

>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH----MRE 52
           I+ G+KVL +G+ SG      +++VG  G V+ VE      RE
Sbjct: 71  IKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRE 113

Length = 229

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 3   QARIIELLEPKI--QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
           Q   ++L+  K+  + G  +LDIG G G ++   AE  G    V GV    EQ   A + 
Sbjct: 57  QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEK- 113

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
             RI    L D  + +R +D R     + PFD I
Sbjct: 114 --RIAARGLED-NVEVRLQDYRD---FEEPFDRI 141

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.88
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.87
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.85
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.83
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.83
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.83
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.8
KOG1661|consensus	237		99.79
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.77
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.75
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.72
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.72
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.7
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.69
PLN02244	340	tocopherol O-methyltransferase	99.69
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.68
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.68
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.67
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.66
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.66
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.65
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.65
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.64
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.64
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.64
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.63
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.63
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.62
PRK11207	197	tellurite resistance protein TehB; Provisional	99.62
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.62
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.6
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.6
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.6
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.6
PRK04266	226	fibrillarin; Provisional	99.59
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.59
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.59
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.58
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.58
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.57
PRK08317	241	hypothetical protein; Provisional	99.57
PLN02336	475	phosphoethanolamine N-methyltransferase	99.57
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.57
KOG1270|consensus	282		99.57
KOG1540|consensus	296		99.57
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.57
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.55
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.54
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.54
PRK12335	287	tellurite resistance protein TehB; Provisional	99.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.52
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.52
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.51
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.51
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.51
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.51
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.51
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
PLN02490	340	MPBQ/MSBQ methyltransferase	99.51
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.51
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.51
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.51
PTZ00146	293	fibrillarin; Provisional	99.51
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.5
TIGR03438	301	probable methyltransferase. This model represents	99.5
PRK07402	196	precorrin-6B methylase; Provisional	99.49
COG4123	248	Predicted O-methyltransferase [General function pr	99.49
PRK05785	226	hypothetical protein; Provisional	99.49
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.49
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.49
PRK14967	223	putative methyltransferase; Provisional	99.49
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.49
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.48
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.48
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.47
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.47
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.47
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.47
PRK06922	677	hypothetical protein; Provisional	99.47
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.46
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.46
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.46
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.46
PRK14968	188	putative methyltransferase; Provisional	99.44
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.44
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.44
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.44
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.44
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.44
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.43
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.43
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.43
PLN03075	296	nicotianamine synthase; Provisional	99.42
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.42
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.41
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.41
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.41
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.41
PLN02476	278	O-methyltransferase	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.4
COG4122	219	Predicted O-methyltransferase [General function pr	99.38
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.38
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PLN02336	475	phosphoethanolamine N-methyltransferase	99.37
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.37
PRK00811	283	spermidine synthase; Provisional	99.36
PRK06202	232	hypothetical protein; Provisional	99.35
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.35
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.35
TIGR00438	188	rrmJ cell division protein FtsJ.	99.35
KOG4300|consensus	252		99.35
COG2890	280	HemK Methylase of polypeptide chain release factor	99.34
KOG1541|consensus	270		99.33
PRK04457	262	spermidine synthase; Provisional	99.33
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.32
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.32
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.3
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.29
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.29
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.29
KOG1271|consensus	227		99.28
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.26
PLN02366	308	spermidine synthase	99.26
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.26
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.24
PRK01581	374	speE spermidine synthase; Validated	99.23
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.23
KOG2915|consensus	314		99.22
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.22
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.22
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.21
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.21
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.2
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.2
PRK03612	521	spermidine synthase; Provisional	99.19
PHA03412	241	putative methyltransferase; Provisional	99.19
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.18
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.18
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.17
PHA03411	279	putative methyltransferase; Provisional	99.15
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.14
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.13
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.12
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.12
KOG2904|consensus	328		99.12
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.1
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.1
KOG2899|consensus	288		99.1
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.08
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.08
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.07
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.06
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.06
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.06
PLN02672	1082	methionine S-methyltransferase	99.06
KOG3010|consensus	261		99.06
KOG1499|consensus	346		99.04
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.04
KOG2361|consensus	264		99.02
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.0
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.0
PRK00536	262	speE spermidine synthase; Provisional	98.98
KOG3191|consensus	209		98.98
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.97
KOG1975|consensus	389		98.97
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.95
COG2521	287	Predicted archaeal methyltransferase [General func	98.95
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.95
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.93
PLN02823	336	spermine synthase	98.93
KOG0820|consensus	315		98.92
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.92
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.92
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.9
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.9
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.88
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.87
KOG1663|consensus	237		98.87
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.87
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.85
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.83
COG2520	341	Predicted methyltransferase [General function pred	98.83
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.82
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.81
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.81
PRK04148	134	hypothetical protein; Provisional	98.8
KOG3420|consensus	185		98.79
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.78
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.78
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.75
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.74
KOG1500|consensus	517		98.72
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.7
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.69
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.64
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.64
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.63
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.62
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.61
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.61
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.59
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.59
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.58
KOG2187|consensus	534		98.55
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.55
KOG1122|consensus	460		98.55
KOG3987|consensus	288		98.51
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.48
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.48
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.47
KOG3045|consensus	325		98.46
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.45
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.44
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.41
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.4
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.36
KOG2940|consensus	325		98.34
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.34
COG4076	252	Predicted RNA methylase [General function predicti	98.3
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.3
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.28
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.25
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.21
PRK10742	250	putative methyltransferase; Provisional	98.2
KOG1596|consensus	317		98.18
KOG4589|consensus	232		98.14
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.13
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.13
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.12
PF13679	141	Methyltransf_32: Methyltransferase domain	98.11
KOG2198|consensus	375		98.09
KOG1331|consensus	293		98.08
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.04
COG3897	218	Predicted methyltransferase [General function pred	98.04
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.01
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.0
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.96
KOG3178|consensus	342		97.96
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.95
KOG1269|consensus	364		97.92
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.9
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.9
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.89
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.83
KOG1709|consensus	271		97.81
KOG0024|consensus	354		97.8
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.71
COG4798	238	Predicted methyltransferase [General function pred	97.69
KOG2730|consensus	263		97.59
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.55
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.54
KOG3115|consensus	249		97.51
KOG2671|consensus	421		97.48
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.46
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.45
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.43
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.42
COG0286	489	HsdM Type I restriction-modification system methyl	97.4
PRK11524	284	putative methyltransferase; Provisional	97.31
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.28
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.28
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	97.26
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.16
KOG2352|consensus	482		97.13
KOG3201|consensus	201		97.07
KOG1501|consensus	636		97.05
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	97.04
PRK13699	227	putative methylase; Provisional	97.03
KOG1562|consensus	337		96.86
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.86
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.85
PHA01634	156	hypothetical protein	96.81
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.77
KOG4058|consensus	199		96.75
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.68
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.68
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.65
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.63
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.63
KOG2793|consensus	248		96.62
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.61
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.55
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.54
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.53
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.42
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.41
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.41
PLN02740	381	Alcohol dehydrogenase-like	96.33
KOG0023|consensus	360		96.27
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.24
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	96.16
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.13
KOG1253|consensus	525		96.1
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.08
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.05
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.98
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	95.98
PLN02827	378	Alcohol dehydrogenase-like	95.95
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	95.94
COG1565	370	Uncharacterized conserved protein [Function unknow	95.85
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	95.82
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.74
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	95.7
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.68
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.68
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	95.67
KOG0822|consensus	649		95.67
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	95.56
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.55
KOG2798|consensus	369		95.53
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	95.52
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	95.41
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.39
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.39
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.39
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.34
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	95.31
KOG2651|consensus	476		95.26
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.25
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	95.25
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.2
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.13
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	95.12
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	95.12
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	95.11
KOG1227|consensus	351		95.07
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	94.83
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.82
KOG0022|consensus	375		94.79
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	94.78
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.78
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	94.73
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.62
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	94.61
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.61
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.58
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.58
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.5
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	94.39
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	94.39
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.36
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.29
TIGR00497	501	hsdM type I restriction system adenine methylase (	94.25
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.19
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.0
KOG2352|consensus	482		93.98
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	93.95
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.85
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.82
COG4301	321	Uncharacterized conserved protein [Function unknow	93.81
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	93.79
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	93.78
PRK10083	339	putative oxidoreductase; Provisional	93.76
COG1568	354	Predicted methyltransferases [General function pre	93.72
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	93.71
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	93.7
KOG1098|consensus	780		93.69
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.69
PTZ00357	1072	methyltransferase; Provisional	93.64
PLN02494	477	adenosylhomocysteinase	93.55
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.54
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	93.53
PLN02702	364	L-idonate 5-dehydrogenase	93.5
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.09
PRK11524	284	putative methyltransferase; Provisional	92.99
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	92.91
KOG2078|consensus	495		92.87
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	92.84
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	92.76
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	92.75
KOG1099|consensus	294		92.67
PTZ00075	476	Adenosylhomocysteinase; Provisional	92.63
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	92.62
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.54
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.54
KOG2360|consensus	413		92.43
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	92.42
PF03269	177	DUF268: Caenorhabditis protein of unknown function	92.38
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	92.36
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.06
KOG1197|consensus	336		91.98
KOG1198|consensus	347		91.96
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	91.95
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.8
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.73
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	91.52
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	91.45
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	91.39
COG2933	358	Predicted SAM-dependent methyltransferase [General	91.34
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	91.24
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	91.21
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	91.2
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	91.15
PRK06940	275	short chain dehydrogenase; Provisional	91.11
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	91.04
PRK13771	334	putative alcohol dehydrogenase; Provisional	91.03
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	90.98
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	90.92
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.77
KOG3924|consensus	419		90.75
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	90.36
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	90.26
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	90.09
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	90.08
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	89.89
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	89.6
KOG2920|consensus	282		89.41
COG0863	302	DNA modification methylase [DNA replication, recom	89.17
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	89.17
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	89.11
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	89.06
PRK13699	227	putative methylase; Provisional	88.84
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	88.66
PTZ00354	334	alcohol dehydrogenase; Provisional	88.53
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	88.26
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	88.21
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	88.21
PRK08324	681	short chain dehydrogenase; Validated	88.11
KOG2539|consensus	491		87.87
PRK08618	325	ornithine cyclodeaminase; Validated	87.66
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	87.59
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	87.5
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	87.47
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	87.46
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	87.41
COG4017	254	Uncharacterized protein conserved in archaea [Func	87.29
cd08252	336	AL_MDR Arginate lyase and other MDR family members	87.09
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	87.08
KOG2912|consensus	419		86.88
PRK07806	248	short chain dehydrogenase; Provisional	86.73
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	86.7
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	86.63
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	86.5
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.5
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	86.44
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	86.3
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	86.07
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	86.04
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.99
PRK10669	558	putative cation:proton antiport protein; Provision	85.91
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.89
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	85.85
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	85.84
PRK06141	314	ornithine cyclodeaminase; Validated	85.28
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.21
cd05564	96	PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic	85.08
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	85.05
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	85.03
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	84.85
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	84.65
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.61
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	84.31
PRK07340	304	ornithine cyclodeaminase; Validated	84.31
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.22
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	84.13
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	84.09
PRK10637	457	cysG siroheme synthase; Provisional	84.08
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.02
KOG1209|consensus	289		83.5
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	83.49
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	83.25
PRK07478	254	short chain dehydrogenase; Provisional	83.22
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.06
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	82.97
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	82.75
PRK06139	330	short chain dehydrogenase; Provisional	82.74
KOG0821|consensus	326		82.45
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	82.38
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	82.36
PRK06701	290	short chain dehydrogenase; Provisional	82.34
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	82.34
PRK07097	265	gluconate 5-dehydrogenase; Provisional	82.23
cd05565	99	PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en	82.13
KOG2782|consensus	303		82.08
PRK06125	259	short chain dehydrogenase; Provisional	81.7
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	81.48
PRK09496	453	trkA potassium transporter peripheral membrane com	81.33
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	81.3
PRK05599	246	hypothetical protein; Provisional	80.95
KOG1201|consensus	300		80.82
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	80.72
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.6
PRK07417	279	arogenate dehydrogenase; Reviewed	80.54
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	80.53
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	80.48
PRK08589	272	short chain dehydrogenase; Validated	80.47
PRK06124	256	gluconate 5-dehydrogenase; Provisional	80.09
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	80.07

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.6e-21  Score=142.38  Aligned_cols=144  Identities=37%  Similarity=0.650  Sum_probs=130.1

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |++++++.+.  ++++.+|||||||+|+.+..+++..+   +|+++|..++..+.|++++...++     .|+.++++|.
T Consensus        60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~-----~nV~v~~gDG  129 (209)
T COG2518          60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGY-----ENVTVRHGDG  129 (209)
T ss_pred             HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCC-----CceEEEECCc
Confidence            6788899887  78999999999999999999999954   999999999999999999999664     6799999999


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN  158 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      ...+...++||.|++....+.+++.+.+.|++||++++.+.+.. .+.+..+.+..++.+.....++.+  |.|+.+
T Consensus       130 ~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG~~~-~q~l~~~~k~~~~~~~~~~l~~v~--~vPl~~  203 (209)
T COG2518         130 SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGP-AQRLLRITKDGDGNFERRDLFNVR--FVPLVG  203 (209)
T ss_pred             ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEccCC-cEEEEEEEEcCCCcEEEeeeccce--eeecCC
Confidence            98888889999999999999999999999999999999999443 378888888888888888889988  998876

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.87  E-value=5.5e-21  Score=144.96  Aligned_cols=148  Identities=37%  Similarity=0.641  Sum_probs=123.8

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |++.+++.+.  +++|.+|||||||+|+.+..+++.+++.+.|+++|.++...+.|++++...+     ..|+.++.+|.
T Consensus        60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-----~~nv~~~~gdg  132 (209)
T PF01135_consen   60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-----IDNVEVVVGDG  132 (209)
T ss_dssp             HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-----THSEEEEES-G
T ss_pred             HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-----cCceeEEEcch
Confidence            6788888886  8999999999999999999999998877789999999999999999999876     36899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA  159 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (216)
                      .......++||.|++....+..+..+.+.|++||++++.... ...+.+..+.+..++.+.........  |.|+.+.
T Consensus       133 ~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~~k~~~g~~~~~~~~~~~--fvpl~~~  207 (209)
T PF01135_consen  133 SEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-GGSQRLVRITKKGDGEFSREELFPVR--FVPLVGG  207 (209)
T ss_dssp             GGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-SSSEEEEEEEEETTTEEEEEEEEEE-----B-BSC
T ss_pred             hhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-CCceEEEEEEEeCCCcEEEEEEeeEE--EEeccCC
Confidence            877777789999999999999999999999999999999887 55688999999988999999999999  9998753

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.85  E-value=2e-19  Score=137.62  Aligned_cols=146  Identities=35%  Similarity=0.592  Sum_probs=120.4

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      +++.+++.+.  +.++.+|||+|||+|+.+..+++..++.++|+++|+++++++.+++++...+     ..++.++.+|+
T Consensus        64 ~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-----~~~v~~~~gd~  136 (212)
T PRK13942         64 MVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-----YDNVEVIVGDG  136 (212)
T ss_pred             HHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCCeEEEECCc
Confidence            4566677664  6789999999999999999999887666799999999999999999998755     36899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA  159 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (216)
                      .......++||+|++....+.++..+.+.|||||++++.....  ...+..+.+.. +.+.....++..  |.|+.+.
T Consensus       137 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~--f~~~~~~  209 (212)
T PRK13942        137 TLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY--SQELIRVEKDN-GKIIKKKLGEVA--FVPLIGK  209 (212)
T ss_pred             ccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC--CcEEEEEEEEC-CEEEEEEeccEE--EEecccC
Confidence            7665556789999999988899999999999999999987654  36666666643 567777778888  8887653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.83  E-value=9.3e-19  Score=134.45  Aligned_cols=147  Identities=33%  Similarity=0.541  Sum_probs=119.4

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      +++.+++.+.  +.++.+|||+|||+|+.+..+++..++.++|+++|.++++++.|++++...+     ..+++++.+|.
T Consensus        65 ~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-----~~~v~~~~~d~  137 (215)
T TIGR00080        65 MVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-----LDNVIVIVGDG  137 (215)
T ss_pred             HHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-----CCCeEEEECCc
Confidence            3556666664  6789999999999999999999987655689999999999999999998865     36899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINAD  160 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .......++||+|+++.....++..+.+.|+|||++++....  ....+..+.+. +..+.........  |.|+....
T Consensus       138 ~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~--~~pl~~~~  211 (215)
T TIGR00080       138 TQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAEKR-GGEIIIKDVEPVA--FVPLVGGE  211 (215)
T ss_pred             ccCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--CceEEEEEEEe-CCEEEEEEeeeEE--EEeCCCCc
Confidence            765544568999999999889999999999999999998766  33555555543 4567777777888  88887643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.83  E-value=8.7e-19  Score=133.56  Aligned_cols=145  Identities=30%  Similarity=0.446  Sum_probs=114.0

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      +.+.+++.+.  +.++.+|||+|||+|+.+..+++..++.++|+++|.++++++.|++++...+.    ..+++++.+|+
T Consensus        60 ~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v~~~~~d~  133 (205)
T PRK13944         60 MVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVVEVYHGDG  133 (205)
T ss_pred             HHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEECCc
Confidence            3455566654  56889999999999999999998876556999999999999999999887553    24689999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL  156 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      .......++||+|++.....++++.+.++|+|||++++...... ...+..+.+. +..+.........  |.|+
T Consensus       134 ~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--f~pl  204 (205)
T PRK13944        134 KRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV-GQVLYKVVKR-GEKVEKRAITYVL--FVPL  204 (205)
T ss_pred             ccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCC-ceEEEEEEEe-CCEEEEEEeceEE--EEec
Confidence            76555557899999999999999999999999999999876543 2455555654 3456666677776  7764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.83  E-value=1.9e-20  Score=144.78  Aligned_cols=106  Identities=27%  Similarity=0.321  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|.+|||+|||||..+..+++..++.++|+++|+|++|++.|+++....+     ..+++++++|++..+.++++||+
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-----~~~i~~v~~da~~lp~~d~sfD~  119 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-----LQNIEFVQGDAEDLPFPDNSFDA  119 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-TT-EEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-----CCCeeEEEcCHHHhcCCCCceeE
Confidence            5688999999999999999999988777899999999999999999998754     35899999999988888899999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      .+++++|+|||||++++...+.
T Consensus       120 v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  120 VTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            999998866      4589999999999998876544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.80  E-value=1e-18  Score=134.07  Aligned_cols=106  Identities=29%  Similarity=0.375  Sum_probs=94.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|.+|||+|||||.++..+++..+ .++|+++|+|+.|+..|+++..+.+     ..++.++++|++..+.++++||+
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~-----~~~i~fv~~dAe~LPf~D~sFD~  122 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG-----VQNVEFVVGDAENLPFPDNSFDA  122 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC-----ccceEEEEechhhCCCCCCccCE
Confidence            34899999999999999999999987 6799999999999999999998855     35599999999988889999999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |.++.++++      .+++++|+|||||++++...+..
T Consensus       123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            999999876      56899999999999988766553

>KOG1661|consensus

Probab=99.79  E-value=4.9e-18  Score=125.07  Aligned_cols=160  Identities=38%  Similarity=0.609  Sum_probs=136.3

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhC-----CCCCCCCCeE
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIR-----PDLLNDGRLH   75 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~-----~~~~~~~~~~   75 (216)
                      |.+.+++.|..+++||.+.||+|+|+|+++..+++.++..+ .++|+|.-++.++.+++++.+.-     .+.+...++.
T Consensus        68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~  147 (237)
T KOG1661|consen   68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS  147 (237)
T ss_pred             HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence            67888999988899999999999999999999998876433 45999999999999999987644     2233456788


Q ss_pred             EEeccCCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceec
Q psy14962         76 LRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINP  155 (216)
Q Consensus        76 ~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (216)
                      ++.+|......+.++||.|++.+.....++.+...|++||.+++........+.+....+..++.......+.+.  ++|
T Consensus       148 ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~--yvP  225 (237)
T KOG1661|consen  148 IVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVR--YVP  225 (237)
T ss_pred             EEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceE--EEe
Confidence            999999988888899999999999999999999999999999999887666677788888888888888888888  999


Q ss_pred             cccccccc
Q psy14962        156 LINADEQN  163 (216)
Q Consensus       156 ~~~~~~~~  163 (216)
                      ++....+.
T Consensus       226 lt~~~~q~  233 (237)
T KOG1661|consen  226 LTSRESQP  233 (237)
T ss_pred             cccccccc
Confidence            88765553

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.77  E-value=9.2e-17  Score=123.16  Aligned_cols=142  Identities=36%  Similarity=0.576  Sum_probs=112.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .+.+++.+.  +.++.+|||+|||+|+.+..+++..   .+++++|.++++++.+++++...+.     .++.+..+|..
T Consensus        67 ~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~  136 (212)
T PRK00312         67 VARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL-----HNVSVRHGDGW  136 (212)
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC-----CceEEEECCcc
Confidence            345555553  5788999999999999999888774   3899999999999999999887553     56899999986


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN  158 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      ......++||+|++....++++..+.+.|+|||.+++... ......+..+.+ .++.+.....++..  |.|+.+
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~p~~~  208 (212)
T PRK00312        137 KGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG-GEEQQLLTRVRK-RGGRFEREVLEEVR--FVPLVK  208 (212)
T ss_pred             cCCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc-CCCceEEEEEEE-cCCeEEEEEEccEE--EEecCC
Confidence            5544457899999999999999999999999999999887 333355555555 45567777777777  777764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.75  E-value=2.8e-17  Score=113.34  Aligned_cols=101  Identities=33%  Similarity=0.396  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      |+.+|||+|||+|..+..+++.. ++.+|+++|+|+++++.|+++....+.    ..+++++++|+.......++||+|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL----SDRITFVQGDAEFDPDFLEPFDLVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT----TTTEEEEESCCHGGTTTSSCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECccccCcccCCCCCEEE
Confidence            68899999999999999999954 467999999999999999999855432    4899999999821222345699999


Q ss_pred             ecC-CCCc---------hHHHHHhcCCCCeEEEEee
Q psy14962         96 LST-YVPE---------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        96 ~~~-~~~~---------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.. ....         +++.+.+.|+|||++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            998 3321         3688999999999999864

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.72  E-value=2.2e-16  Score=124.54  Aligned_cols=109  Identities=24%  Similarity=0.241  Sum_probs=88.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++......  ....++.++++|+...+.++++||+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~~~~~d~~~lp~~~~sfD~  148 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIEWIEGDATDLPFDDCYFDA  148 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeEEEEcccccCCCCCCCEeE
Confidence            56789999999999999999998876667999999999999999876532100  0125789999998876666789999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      ++.++.++|||||++++.....
T Consensus       149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            999888765      4689999999999999976654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.72  E-value=1e-17  Score=134.98  Aligned_cols=104  Identities=21%  Similarity=0.231  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|.++++++.|+++....+.    ..++.++++|++......++||+|
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i~~~~~dae~l~~~~~~FD~V  202 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPV----TSTIEYLCTTAEKLADEGRKFDAV  202 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCc----ccceeEEecCHHHhhhccCCCCEE
Confidence            35679999999999999988865   56999999999999999987654221    247899999986554445789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++..++++      +++.+.++|||||.+++.+.+..
T Consensus       203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            99988876      56899999999999999876653

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.70  E-value=6.2e-16  Score=120.07  Aligned_cols=106  Identities=22%  Similarity=0.320  Sum_probs=88.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.++++....+     ..++.++.+|........++||+
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~  117 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-----LHNVELVHGNAMELPFDDNSFDY  117 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-----CCceEEEEechhcCCCCCCCccE
Confidence            5678999999999999999999987667799999999999999999887644     35789999998765555678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      +++++.++|+|||.+++...+.
T Consensus       118 V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       118 VTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            999877655      4578899999999999876544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=3.3e-16  Score=113.92  Aligned_cols=103  Identities=23%  Similarity=0.338  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D   92 (216)
                      +.+.+|||+|||+|..+..+++..+++.+++|+|+++++++.|++++...+.     .++.+.++|+.. ....  +.||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni~~~~~d~~~-l~~~~~~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNIEFIQGDIED-LPQELEEKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTEEEEESBTTC-GCGCSSTTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----cccceEEeehhc-cccccCCCee
Confidence            4678999999999999999997666678999999999999999999888653     589999999987 3322  7899


Q ss_pred             EEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++..++++      +++.+.+.|+++|.+++....
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999987754      468899999999999986554

...

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.69  E-value=2.4e-15  Score=121.17  Aligned_cols=115  Identities=34%  Similarity=0.602  Sum_probs=94.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .+.+++.+.  ++++.+|||+|||+|+.+..+++..+..+.|+++|.++++++.|++++...+     ..++.++.+|..
T Consensus        69 ~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-----~~nV~~i~gD~~  141 (322)
T PRK13943         69 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IENVIFVCGDGY  141 (322)
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEeCChh
Confidence            345555553  5788999999999999999999986544579999999999999999988755     367889999976


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ......++||+|++....+..+..+.+.|+|||++++.....
T Consensus       142 ~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~  183 (322)
T PRK13943        142 YGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK  183 (322)
T ss_pred             hcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCc
Confidence            555445679999999888888888999999999999876543

>PLN02244 tocopherol O-methyltransferase

Probab=99.69  E-value=8.9e-16  Score=125.48  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++..  +.+|+|+|+++.+++.++++....+.    ..++.+..+|+......+++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGL----SDKVSFQVADALNQPFEDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEcCcccCCCCCCCccEE
Confidence            567899999999999999999875  45999999999999999998876543    357999999987666567899999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ++...+++      ++.++.++|||||++++..+.
T Consensus       191 ~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        191 WSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             EECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99887755      457899999999999997643

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.68  E-value=1.1e-16  Score=125.98  Aligned_cols=104  Identities=19%  Similarity=0.211  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++....+.    ..++.++++|+.... ...++||+
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v~~~~~d~~~l~~~~~~~fD~  115 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGV----SDNMQFIHCAAQDIAQHLETPVDL  115 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCC----ccceEEEEcCHHHHhhhcCCCCCE
Confidence            45679999999999999999987   45999999999999999999877543    257889998876432 23568999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |++..++++      ++..+.++|||||++++...+..
T Consensus       116 V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036        116 ILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             EEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence            999988755      46889999999999998766653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.68  E-value=1.4e-15  Score=113.84  Aligned_cols=105  Identities=22%  Similarity=0.277  Sum_probs=87.3

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .++++.+|||+|||+|..+..+++.. ++.+|+++|.++.+++.|+++....++     .+++++.+|...... .++||
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l-----~~i~~~~~d~~~~~~-~~~fD  114 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL-----KNVTVVHGRAEEFGQ-EEKFD  114 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC-----CCEEEEeccHhhCCC-CCCcc
Confidence            35568999999999999999998764 467999999999999999999988663     569999999876544 66899


Q ss_pred             EEEecCC--CCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTY--VPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++..  .+.+++.+.++|+|||++++.....
T Consensus       115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107        115 VVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             EEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            9999754  2357789999999999999886554

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.67  E-value=1e-16  Score=121.29  Aligned_cols=101  Identities=22%  Similarity=0.259  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      +|.+|||+|||-|.++..+|+.   +++|+|+|.++++++.|+.+....+      .++++.....++....+++||+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~g------v~i~y~~~~~edl~~~~~~FDvV~  129 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESG------VNIDYRQATVEDLASAGGQFDVVT  129 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcc------ccccchhhhHHHHHhcCCCccEEE
Confidence            7899999999999999999998   5799999999999999999988755      346677777665555558999999


Q ss_pred             ecCCCCch------HHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LSTYVPEI------PYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |..+++|+      ++.+.+.+||||.+++++.+..
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            99999874      4788999999999999987753

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=2.5e-15  Score=121.76  Aligned_cols=100  Identities=22%  Similarity=0.198  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+|.+|||+|||+|+.+..+++.. + ..|+|+|+|+.++..++......+.    ..++.++.+|+..... .++||+|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~~~~~----~~~i~~~~~d~e~lp~-~~~FD~V  193 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRKLLGN----DQRAHLLPLGIEQLPA-LKAFDTV  193 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHHhcCC----CCCeEEEeCCHHHCCC-cCCcCEE
Confidence            367899999999999999998873 2 3799999999988754433222110    2478999999875554 6789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++...+++      +++++++.|+|||.+++..
T Consensus       194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             EECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99888755      5689999999999999864

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=2.1e-15  Score=117.85  Aligned_cols=110  Identities=28%  Similarity=0.305  Sum_probs=92.3

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+.+.+  +++||.+|||||||.|.+++.+|+..  +.+|+|+++|+++.+.+++++...|++    .+++++..|...
T Consensus        62 ~~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd  133 (283)
T COG2230          62 DLILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRD  133 (283)
T ss_pred             HHHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEeccccc
Confidence            3444555  48999999999999999999999997  459999999999999999999998763    689999999765


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ..   +.||.|++..++++        +++.+.++|+|||.+++.+...
T Consensus       134 ~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         134 FE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             cc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            43   34999999998865        5689999999999998875444

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=8.6e-16  Score=102.36  Aligned_cols=89  Identities=28%  Similarity=0.424  Sum_probs=74.6

Q ss_pred             EEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCC
Q psy14962         21 LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYV  100 (216)
Q Consensus        21 ldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~  100 (216)
                      ||+|||+|..+..+++.  +..+++++|+++++++.++++...        .++.+..+|....+.++++||+|++...+
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccce
Confidence            79999999999999988  456999999999999999988654        45679999998887778999999999888


Q ss_pred             Cc------hHHHHHhcCCCCeEEEE
Q psy14962        101 PE------IPYSILLQLKPGGRLVC  119 (216)
Q Consensus       101 ~~------~~~~~~~~L~~gG~lv~  119 (216)
                      ++      +++++.++|||||++++
T Consensus        71 ~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeccCHHHHHHHHHHHcCcCeEEeC
Confidence            76      45899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.65  E-value=1.7e-15  Score=119.71  Aligned_cols=109  Identities=32%  Similarity=0.341  Sum_probs=82.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +++|.+|||||||.|..+..++++.  +++|+|+++|++..+.+++++...|+    .+++.+...|..
T Consensus        51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v~v~~~D~~  122 (273)
T PF02353_consen   51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGL----EDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS----SSTEEEEES-GG
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEeecc
Confidence            344455553  7899999999999999999999997  45999999999999999999998775    367999999976


Q ss_pred             CCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ...   .+||.|++...+++        +++.+.++|+|||.+++...
T Consensus       123 ~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen  123 DLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             G------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             ccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence            432   38999999888866        35899999999999998643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.64  E-value=1.5e-14  Score=101.29  Aligned_cols=110  Identities=25%  Similarity=0.324  Sum_probs=86.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|+|+|||+|..+..+++..+ ..+|+++|+++.+++.++++....+.     .++.++..|....
T Consensus        10 ~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~   81 (124)
T TIGR02469        10 LTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV-----SNIVIVEGDAPEA   81 (124)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC-----CceEEEecccccc
Confidence            3444443  45678999999999999999998853 46999999999999999998877542     5688888886532


Q ss_pred             C-CCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeec
Q psy14962         85 L-LHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~-~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~  122 (216)
                      . ....+||+|++......   +++.+.+.|+|||++++...
T Consensus        82 ~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        82 LEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             ChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence            2 22358999999876544   67899999999999998653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.64  E-value=4.8e-15  Score=116.16  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=83.7

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+.++.+|||+|||+|..+..+++.. .++.+++++|+|+.|++.|++++...+.    ..+++++++|+.....  ..+
T Consensus        53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v~~~~~d~~~~~~--~~~  126 (247)
T PRK15451         53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAI--ENA  126 (247)
T ss_pred             hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEeCChhhCCC--CCC
Confidence            35678999999999999998888753 3567999999999999999999876542    2478999999865433  348


Q ss_pred             cEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|+++..+++        +++++++.|+|||.+++..
T Consensus       127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99998776543        5689999999999999975

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.64  E-value=1.4e-14  Score=106.04  Aligned_cols=113  Identities=29%  Similarity=0.387  Sum_probs=95.1

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      .+..|.  +.+|++++|+|||||.++++++ ..+|..+|+++|.++++++..+++.++.+     .+|+.++.+++-..+
T Consensus        26 ~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-----~~n~~vv~g~Ap~~L   97 (187)
T COG2242          26 TLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFG-----VDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhC-----CCcEEEEeccchHhh
Confidence            344444  6899999999999999999999 55778899999999999999999999966     589999999987555


Q ss_pred             CCCCCccEEEecCCC--CchHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         86 LHQAPFDAIYLSTYV--PEIPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ....++|.||....-  +.+++.+...|||||++|+..-..+.
T Consensus        98 ~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~  140 (187)
T COG2242          98 PDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLET  140 (187)
T ss_pred             cCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence            444479999998773  44778999999999999998766643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=5.1e-15  Score=116.60  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=82.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  ..++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|++            .++.++.+|+...
T Consensus        20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~------------~~~~~~~~d~~~~   84 (255)
T PRK14103         20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE------------RGVDARTGDVRDW   84 (255)
T ss_pred             HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh------------cCCcEEEcChhhC
Confidence            3444443  4578899999999999999999875 56799999999999998864            2477889998644


Q ss_pred             CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      . ..++||+|+++..+++      +++++.+.|||||.+++..+.
T Consensus        85 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         85 K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            3 4568999999998766      357888999999999987643

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.63  E-value=1e-14  Score=108.02  Aligned_cols=102  Identities=26%  Similarity=0.280  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..++.     .+++++..|...... .++||+|+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~v~~~~~d~~~~~~-~~~fD~Iv  103 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL-----ENVEVVQSDLFEALP-DGKFDLIV  103 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC-----TTEEEEESSTTTTCC-TTCEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc-----ccccccccccccccc-ccceeEEE
Confidence            67899999999999999999874 556799999999999999999998764     348999999875544 67899999


Q ss_pred             ecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++.|++.           ++....++|+|||.+++.....
T Consensus       104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            9998743           4577889999999998765544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.62  E-value=9.7e-15  Score=116.11  Aligned_cols=105  Identities=27%  Similarity=0.366  Sum_probs=87.6

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|+++....+     ..+++++.+|+......+++||
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-----~~~v~~~~~d~~~l~~~~~~fD  148 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNVEFRLGEIEALPVADNSVD  148 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-----CCCEEEEEcchhhCCCCCCcee
Confidence            35789999999999999988888887766689999999999999999887755     3578899999876555567899


Q ss_pred             EEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +|+++..+++      +++++.++|||||++++...
T Consensus       149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9998876543      56899999999999998643

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.62  E-value=1.2e-14  Score=110.13  Aligned_cols=104  Identities=18%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+.  ..++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.+++.....+.     .++++...|+....
T Consensus        22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v~~~~~d~~~~~   91 (197)
T PRK11207         22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENL-----DNLHTAVVDLNNLT   91 (197)
T ss_pred             HHHhcc--cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCC-----CcceEEecChhhCC
Confidence            444443  346789999999999999999986   45999999999999999998877542     56888888876443


Q ss_pred             CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                      . .++||+|++...+++        ++..+.++|+|||.+++.
T Consensus        92 ~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         92 F-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             c-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3 457999999877643        457889999999996553

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.62  E-value=8.7e-15  Score=115.62  Aligned_cols=101  Identities=25%  Similarity=0.225  Sum_probs=82.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.|+++...       ..++.+..+|+.....++++||+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~~~~~~~~FD~  120 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILKKDFPENTFDM  120 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcccCCCCCCCeEE
Confidence            6788999999999999998888764  45999999999999999987643       25789999998765555678999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...+.+        +++++.++|||||++++....
T Consensus       121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            998654422        557889999999999997553

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=8.6e-15  Score=109.24  Aligned_cols=100  Identities=24%  Similarity=0.265  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..++.. .+..+|+++|.++.+++.++++..+.+.     .++.++.+|+... ...++||+|+
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i~~i~~d~~~~-~~~~~fD~I~  114 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL-----NNVEIVNGRAEDF-QHEEQFDVIT  114 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCeEEEecchhhc-cccCCccEEE
Confidence            4889999999999999998865 3456899999999999999998887552     5799999998754 2356899999


Q ss_pred             ecCCCC---chHHHHHhcCCCCeEEEEeecC
Q psy14962         96 LSTYVP---EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        96 ~~~~~~---~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +.. +.   .+++.+.++|+|||.+++....
T Consensus       115 s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138       115 SRA-LASLNVLLELTLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             ehh-hhCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            976 43   3557889999999999986543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.60  E-value=7.6e-15  Score=115.37  Aligned_cols=99  Identities=22%  Similarity=0.214  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.   +.+++++|+|+.+++.++++.          ....++++|+...+..+++||+|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~V  107 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD----------AADHYLAGDIESLPLATATFDLA  107 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC----------CCCCEEEcCcccCcCCCCcEEEE
Confidence            35679999999999999888765   459999999999999988763          23467888987655566789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      +++..+++      ++.++.++|+|||.++++......
T Consensus       108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~  145 (251)
T PRK10258        108 WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS  145 (251)
T ss_pred             EECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence            99888755      468899999999999998876643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=3e-14  Score=108.79  Aligned_cols=116  Identities=28%  Similarity=0.400  Sum_probs=100.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      +.|+..+.  +.||.+|+|.|.|+|.++..+++.+++.++|+..|..++.++.|++++...++    .+++.+...|...
T Consensus        84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l----~d~v~~~~~Dv~~  157 (256)
T COG2519          84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL----GDRVTLKLGDVRE  157 (256)
T ss_pred             HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc----ccceEEEeccccc
Confidence            34555554  78999999999999999999999999888999999999999999999999775    3558899999876


Q ss_pred             CCCCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ....+ .||+|+.+.+-+| .++.+++.|+|||.+++.+++.+.
T Consensus       158 ~~~~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ  200 (256)
T COG2519         158 GIDEE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ  200 (256)
T ss_pred             ccccc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence            65433 8999999999988 789999999999999998877654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.60  E-value=2.5e-14  Score=108.19  Aligned_cols=105  Identities=19%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  ..++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.++++....++      ++.+...|...
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~   88 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINA   88 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchh
Confidence            34555554  345679999999999999999986   45999999999999999988776542      36677777653


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                      ... .++||+|++...+++        +++.+.+.|+|||++++.
T Consensus        89 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        89 AAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            332 357999999877643        457888999999996654

Part of a tellurite-reducing operon tehA and tehB

>TIGR00740 methyltransferase, putative

Probab=99.60  E-value=3.4e-14  Score=110.92  Aligned_cols=103  Identities=16%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      +.++.+|||+|||+|..+..+++.+. ++.+++|+|+++.|++.|++++...+.    ..+++++.+|+.....  ..+|
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v~~~~~d~~~~~~--~~~d  124 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHVEI--KNAS  124 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCCC--CCCC
Confidence            35788999999999999999988753 567999999999999999998876432    2578999999875543  3489


Q ss_pred             EEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         93 AIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        93 ~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +|++...+++        +++++.+.|+|||.+++...
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence            9998877654        45788999999999999753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK04266 fibrillarin; Provisional

Probab=99.59  E-value=4.4e-14  Score=108.78  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=81.3

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQA   89 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~   89 (216)
                      .+.++.+|||+|||+|..+..+++.++ .+.|+++|+++.|++.+.+++..       ..|+.++.+|.....   .-.+
T Consensus        69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~~l~~  140 (226)
T PRK04266         69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYAHVVE  140 (226)
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhhhccc
Confidence            467999999999999999999999875 56999999999999988777654       257888899976321   1124


Q ss_pred             CccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962         90 PFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        90 ~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +||+|+++...++    ++..+.++|||||.+++++.
T Consensus       141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~  177 (226)
T PRK04266        141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK  177 (226)
T ss_pred             cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            6999998766543    36889999999999999644

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.59  E-value=3.2e-14  Score=107.88  Aligned_cols=108  Identities=24%  Similarity=0.350  Sum_probs=86.6

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~   91 (216)
                      .+.++.+|||+|||+|.++..+++..++..+|+++|.++.+++.+++++...++    ..++.++.+|....... .+.|
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCeEEEEechhhhHhhcCCCC
Confidence            367899999999999999999998766567999999999999999999887552    25788888887643222 3579


Q ss_pred             cEEEecCCC---CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYV---PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~---~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |.|+++...   ..+++.+.+.|+|||++++.....
T Consensus       113 D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (198)
T PRK00377        113 DRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL  148 (198)
T ss_pred             CEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence            999996543   446788899999999999865544

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.59  E-value=3.4e-14  Score=112.09  Aligned_cols=105  Identities=16%  Similarity=0.241  Sum_probs=84.2

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|+++.          .++.++.+|+...
T Consensus        22 ~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~   88 (258)
T PRK01683         22 DLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASW   88 (258)
T ss_pred             HHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhcc
Confidence            3444443  4678899999999999999999875 4569999999999999998763          4578888997643


Q ss_pred             CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      . ..++||+|+++..+++      ++..+.++|+|||.+++..+.
T Consensus        89 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         89 Q-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             C-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            3 3458999999998865      468899999999999997644

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.58  E-value=2e-14  Score=109.32  Aligned_cols=104  Identities=24%  Similarity=0.292  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-CCCC--CCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-RTGL--LHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D   92 (216)
                      ++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.|+++....+     ..++.++++|+ ....  ...++||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEG-----LTNLRLLCGDAVEVLLDMFPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcC-----CCCEEEEecCHHHHHHHHcCccccc
Confidence            67899999999999999998875 45689999999999999999887754     36799999998 4322  3456899


Q ss_pred             EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .|++..+.+              .+++.+.++|+|||.+++.+.+..
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~  160 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG  160 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence            999875432              257899999999999999876553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.58  E-value=1.8e-14  Score=111.28  Aligned_cols=99  Identities=25%  Similarity=0.291  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      ++|||+|||+|..+..+++.. ++.+++++|+|+++++.+++++...++    ..++.+...|....+. .++||+|++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i~~~~~d~~~~~~-~~~fD~I~~~   74 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL----QGRIRIFYRDSAKDPF-PDTYDLVFGF   74 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEecccccCCC-CCCCCEeehH
Confidence            379999999999999999875 356999999999999999999877554    3578999999864433 3579999987


Q ss_pred             CCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         98 TYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        98 ~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+++      +++++.++|+|||++++...
T Consensus        75 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       75 EVIHHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            76643      56899999999999998754

>TIGR00452 methyltransferase, putative

Probab=99.57  E-value=4.5e-14  Score=113.48  Aligned_cols=102  Identities=20%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|.+|||+|||+|+++..++.. ++ ..|+|+|+|+.|+..++..-....    ...++.+...++..... ..+||+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~----~~~~v~~~~~~ie~lp~-~~~FD~  191 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLD----NDKRAILEPLGIEQLHE-LYAFDT  191 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhc----cCCCeEEEECCHHHCCC-CCCcCE
Confidence            356889999999999999888876 22 379999999999876533211111    02467788777654433 347999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+.+      .+.+++++|+|||.+++.+.
T Consensus       192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            999988765      56899999999999999653

Known examples to date are restricted to the proteobacteria.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.57  E-value=1.4e-13  Score=103.43  Aligned_cols=101  Identities=24%  Similarity=0.271  Sum_probs=82.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....+.     .++++..+|.....  .++||+
T Consensus        29 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~-----~~i~~~~~d~~~~~--~~~~D~  100 (187)
T PRK08287         29 LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC-----GNIDIIPGEAPIEL--PGKADA  100 (187)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CCeEEEecCchhhc--CcCCCE
Confidence            5678899999999999999999874 457999999999999999998877552     56888888864322  357999


Q ss_pred             EEecCCCC---chHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVP---EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++.....   .++..+.+.|+|||++++...
T Consensus       101 v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        101 IFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             EEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            99876543   356788899999999988643

>PRK08317 hypothetical protein; Provisional

Probab=99.57  E-value=8.5e-14  Score=108.25  Aligned_cols=104  Identities=27%  Similarity=0.360  Sum_probs=85.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..++..+++++|+++.+++.++++....      ..++.+...|........++||+
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~~~~~~~~~D~   90 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADGLPFPDGSFDA   90 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEecccccCCCCCCCceE
Confidence            678899999999999999999988756679999999999999998873321      35788999987655445678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...+++      +++++.++|+|||.+++..+.
T Consensus        91 v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         91 VRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             EEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            999887754      568999999999999987654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.57  E-value=5.9e-14  Score=119.92  Aligned_cols=108  Identities=24%  Similarity=0.322  Sum_probs=87.2

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+.  +.++.+|||+|||+|..+..+++..  +.+|+|+|+|+.+++.|+++....      ..++.+..+|+....
T Consensus       258 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~~~  327 (475)
T PLN02336        258 FVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTKKT  327 (475)
T ss_pred             HHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCcccCC
Confidence            444443  4678899999999999999998875  459999999999999998876532      257899999987655


Q ss_pred             CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         86 LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .++++||+|++...+.+      +++.++++|+|||.+++....
T Consensus       328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  371 (475)
T PLN02336        328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC  371 (475)
T ss_pred             CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            55678999999888765      568999999999999997543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.57  E-value=7.2e-14  Score=111.07  Aligned_cols=100  Identities=19%  Similarity=0.292  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGK--TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .+.+|||+|||+|.++..+++....  ...++|+|+|+.+++.|+++.          .++.+..+|....+..+++||+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~  154 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA  154 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence            4578999999999999999877532  237999999999999987652          4688899998766666788999


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      |++... +...+++.++|||||++++..+.+..
T Consensus       155 I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~~  186 (272)
T PRK11088        155 IIRIYA-PCKAEELARVVKPGGIVITVTPGPRH  186 (272)
T ss_pred             EEEecC-CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence            998665 45668999999999999998877643

>KOG1270|consensus

Probab=99.57  E-value=1.9e-15  Score=115.25  Aligned_cols=100  Identities=29%  Similarity=0.375  Sum_probs=78.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCC----CeEEEeccCCCCCCCCCCcc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG----RLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~D   92 (216)
                      |.+|||+|||+|.++..+|+.   +++|+|+|+++.+++.|+++....-   ....    ++.+.+.|++..   .++||
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP---~~~~~~~y~l~~~~~~~E~~---~~~fD  160 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDP---VLEGAIAYRLEYEDTDVEGL---TGKFD  160 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCc---hhccccceeeehhhcchhhc---ccccc
Confidence            478999999999999999998   5699999999999999999833211   1122    245556665433   34599


Q ss_pred             EEEecCCCCch------HHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPEI------PYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+|...++|+      +..+.+.|||+|.+++++.+..
T Consensus       161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            99999998774      5788899999999999877664

>KOG1540|consensus

Probab=99.57  E-value=9.8e-14  Score=105.48  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=90.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKT-----GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      .++.++||++||||.++-.+.++.+..     .+|+++|+++.|+..++++..+.++  ....++.++++|++..+.+++
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l--~~~~~~~w~~~dAE~LpFdd~  176 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL--KASSRVEWVEGDAEDLPFDDD  176 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC--CcCCceEEEeCCcccCCCCCC
Confidence            457899999999999999999887542     6999999999999999999866443  112348899999998888899


Q ss_pred             CccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         90 PFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        90 ~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +||...+..++++      .+++++|+|||||+|.+...+..
T Consensus       177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv  218 (296)
T KOG1540|consen  177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKV  218 (296)
T ss_pred             cceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            9999999888765      56899999999999998765553

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.57  E-value=8.6e-14  Score=107.87  Aligned_cols=117  Identities=31%  Similarity=0.457  Sum_probs=93.8

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..|+..+.  +.||++|||.|.|+|.++..+++.++|.++|+..|..++..+.|++++..+++    .+++.+.+.|+..
T Consensus        30 ~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl----~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   30 SYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL----DDNVTVHHRDVCE  103 (247)
T ss_dssp             HHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC----CTTEEEEES-GGC
T ss_pred             HHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC----CCCceeEecceec
Confidence            34555554  89999999999999999999999999999999999999999999999999886    4789999999853


Q ss_pred             -CCC--CCCCccEEEecCCCCc-hHHHHHhcC-CCCeEEEEeecCCCC
Q psy14962         84 -GLL--HQAPFDAIYLSTYVPE-IPYSILLQL-KPGGRLVCGVGKSKS  126 (216)
Q Consensus        84 -~~~--~~~~~D~i~~~~~~~~-~~~~~~~~L-~~gG~lv~~~~~~~~  126 (216)
                       ...  .+..+|.|+.+.+-+| .+..+.+.| ++||++.+-.++-+.
T Consensus       104 ~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ  151 (247)
T PF08704_consen  104 EGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ  151 (247)
T ss_dssp             G--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred             ccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHH
Confidence             221  1367999999999998 779999999 899999888777643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.55  E-value=2.3e-14  Score=106.37  Aligned_cols=99  Identities=19%  Similarity=0.291  Sum_probs=84.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.+..+|.|+|||+|..+..++++. |++.++|+|.|++|++.|++++          .+++|..+|... +.++.+.|+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~-w~p~~~~dl   95 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRT-WKPEQPTDL   95 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhh-cCCCCccch
Confidence            4566799999999999999999998 5789999999999999998764          568999999763 344567999


Q ss_pred             EEecCCCCch------HHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPEI------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++++..++++      +.++...|.|||.+-++.+..
T Consensus        96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            9999999774      478889999999999987655

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.55  E-value=5e-14  Score=106.48  Aligned_cols=104  Identities=19%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D   92 (216)
                      ...+|||+|||+|.++..+++.. |+..++|+|+++.+++.|+++....++     .++.++.+|+....   ...+++|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni~~i~~d~~~~~~~~~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL-----KNLHVLCGDANELLDKFFPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCEEEEccCHHHHHHhhCCCCcee
Confidence            56799999999999999999874 567999999999999999998887653     68999999986322   3345899


Q ss_pred             EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .|+++.+.+              .++..+.++|||||.+++.+.+..
T Consensus        90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~  136 (194)
T TIGR00091        90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP  136 (194)
T ss_pred             EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            999886543              257889999999999999876654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.54  E-value=1.5e-14  Score=97.91  Aligned_cols=90  Identities=27%  Similarity=0.376  Sum_probs=70.1

Q ss_pred             EEEEcCCCchHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         20 VLDIGSGSGFMSCVFAELV--GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        20 vldiG~G~G~~~~~l~~~~--~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      |||+|||+|..+..+++.+  ++..+++++|+|+++++.++++....+      .+++++++|+.......++||+|++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~~~~~~D~~~l~~~~~~~D~v~~~   74 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKVRFVQADARDLPFSDGKFDLVVCS   74 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------CceEEEECCHhHCcccCCCeeEEEEc
Confidence            7999999999999999886  333699999999999999999987643      37899999997654456799999995


Q ss_pred             CC-CCc--------hHHHHHhcCCCCe
Q psy14962         98 TY-VPE--------IPYSILLQLKPGG  115 (216)
Q Consensus        98 ~~-~~~--------~~~~~~~~L~~gG  115 (216)
                      .. +.+        +++++.++|+|||
T Consensus        75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   75 GLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            44 543        4588889999998

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.54  E-value=1.9e-13  Score=108.12  Aligned_cols=108  Identities=23%  Similarity=0.256  Sum_probs=87.6

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+++|.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++.+.+.     .++.++..|........+.||
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~fD  142 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-----LNVAVTNFDGRVFGAAVPKFD  142 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcEEEecCCHHHhhhhccCCC
Confidence            357899999999999999999998876556999999999999999999988663     578899999764333345699


Q ss_pred             EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+++.+..                            .+++.+.+.|||||++++++.+..
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            999876631                            145677789999999999877653

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.54  E-value=2.1e-13  Score=112.00  Aligned_cols=102  Identities=16%  Similarity=0.199  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +.+|||+|||+|.++..+++.. |..+|+++|.|+.+++.|++++..++.+  ...++.+...|..... ...+||+|++
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-~~~~fDlIls  304 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-EPFRFNAVLC  304 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-CCCCEEEEEE
Confidence            4699999999999999999884 5679999999999999999998765421  1236788888875433 3457999999


Q ss_pred             cCCCCc-----------hHHHHHhcCCCCeEEEEeec
Q psy14962         97 STYVPE-----------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        97 ~~~~~~-----------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +.+++.           ++..+.++|+|||.+++...
T Consensus       305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            988743           45778899999999999753

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.52  E-value=2.4e-13  Score=108.84  Aligned_cols=96  Identities=22%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..+++.   +.+|+++|.|+.+++.++++....+      .++.+...|+..... .++||+|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~------l~v~~~~~D~~~~~~-~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKEN------LNIRTGLYDINSASI-QEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcC------CceEEEEechhcccc-cCCccEEE
Confidence            3459999999999999999886   4599999999999999999887754      267888888764333 56899999


Q ss_pred             ecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         96 LSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        96 ~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +...+++        +++.+.++|+|||++++.+
T Consensus       190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9877543        4688899999999977644

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.52  E-value=2.4e-13  Score=112.55  Aligned_cols=98  Identities=29%  Similarity=0.237  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..  +.+|+|+|+|+++++.|+++...        .++++...|....   .++||.
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~~fD~  231 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NGQFDR  231 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CCCCCE
Confidence            5789999999999999999999875  45999999999999999988743        3477888886543   467999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++        +++.+.++|||||++++.....
T Consensus       232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            998776543        4688899999999999976543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.52  E-value=2.3e-13  Score=104.83  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=77.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.....++.+|||+|||+|.++..+++.   +.+++|+|++++++..|++++...+.    ..++.+.++|+...
T Consensus        44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~~  116 (219)
T TIGR02021        44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDV----AGNVEFEVNDLLSL  116 (219)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChhhC
Confidence            344444322456889999999999999999876   35999999999999999998876431    24788999997654


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEE
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~  119 (216)
                      .   ++||+|++...+.+        ++..+.+.+++++.+.+
T Consensus       117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            3   67999998766533        34566677776655544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=1.6e-13  Score=107.71  Aligned_cols=99  Identities=19%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--HHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAW--ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .|.+|||||||+|+++-.+++..+  ..|+|+|.+.-......  +++...      ...+.++...++..+. .+.||+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~~lplgvE~Lp~-~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVFELPLGVEDLPN-LGAFDT  185 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCC------CccEEEcCcchhhccc-cCCcCE
Confidence            689999999999999999998832  38999999987654422  222210      1223333233333333 678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++..++.|      .+.+++..|+|||.+++.+.-
T Consensus       186 VF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlv  221 (315)
T PF08003_consen  186 VFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLV  221 (315)
T ss_pred             EEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEee
Confidence            999999876      568999999999999996543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.51  E-value=4.2e-14  Score=98.13  Aligned_cols=100  Identities=31%  Similarity=0.288  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCccEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDAI   94 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i   94 (216)
                      |.+|||+|||+|.++..+++..  ..+++++|+++..++.++.++...+.    ..+++++.+|.....  ...++||+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL----DDRVEVIVGDARDLPEPLPDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT----TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC----CceEEEEECchhhchhhccCceeEEE
Confidence            5789999999999999999884  46999999999999999999888553    367999999986433  346789999


Q ss_pred             EecCCCCc--------------hHHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYVPE--------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +++.++..              +++.+.++|+|||.+++.++
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99998742              35788899999999998764

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.51  E-value=1.8e-13  Score=106.49  Aligned_cols=112  Identities=22%  Similarity=0.289  Sum_probs=86.6

Q ss_pred             HHHHHHhcccC-CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          4 ARIIELLEPKI-QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         4 ~~~~~~l~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ..+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++.++..++++..         .++.++.+|..
T Consensus        21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~   90 (240)
T TIGR02072        21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE   90 (240)
T ss_pred             HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence            34444444211 345789999999999999998874 45689999999999988877542         36788999987


Q ss_pred             CCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .....+++||+|++...+++      ++..+.+.|+|||.+++..+...
T Consensus        91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072        91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            65555678999999887754      56889999999999999876553

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.51  E-value=3e-13  Score=108.27  Aligned_cols=108  Identities=24%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962          7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus         7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (216)
                      ++.+.....++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..+++    ..++.+...+...  .
T Consensus       150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~----~~~~~~~~~~~~~--~  221 (288)
T TIGR00406       150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQV----SDRLQVKLIYLEQ--P  221 (288)
T ss_pred             HHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCC----CcceEEEeccccc--c
Confidence            3344333467899999999999999888765 3 34899999999999999999887653    2345556555322  2


Q ss_pred             CCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEeec
Q psy14962         87 HQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..++||+|+++....   .++..+.++|+|||+++++..
T Consensus       222 ~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       222 IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            246899999987654   356788999999999999643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.51  E-value=1.7e-13  Score=102.32  Aligned_cols=100  Identities=18%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++...+      .++.++.+|.....  .++||+|
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~V   86 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKGV--RGKFDVI   86 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC------CceEEEEccccccc--CCcccEE
Confidence            456799999999999999998873   289999999999999999987644      35788888875433  3489999


Q ss_pred             EecCCCC---------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVP---------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +++.++.                           .+++.+.++|+|||.+++......
T Consensus        87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            9987752                           135778899999999988765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=5.3e-13  Score=108.84  Aligned_cols=100  Identities=20%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ...+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..+++      ...++..|.....  .++||+|+
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~~--~~~fDlIv  266 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSDI--KGRFDMII  266 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEccccccc--CCCccEEE
Confidence            34589999999999999999874 456999999999999999999888652      3467777765432  46799999


Q ss_pred             ecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++.+++.           ++..+.+.|+|||.+++.....
T Consensus       267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~  306 (342)
T PRK09489        267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (342)
T ss_pred             ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence            9998863           4577889999999998876543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.51  E-value=2.6e-13  Score=109.97  Aligned_cols=98  Identities=17%  Similarity=0.088  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++..+ +.+++++|.++++++.|+++...        .+++++.+|+......+++||+|
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCCCCceeEE
Confidence            4678999999999999998888753 46999999999999999887543        46888999987655556789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++...+++      .++++.++|+|||.+++..
T Consensus       183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            99887654      5689999999999998753

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.4e-13  Score=108.55  Aligned_cols=109  Identities=29%  Similarity=0.369  Sum_probs=81.0

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+...+++|.+|||+|||+|.+++.+++..  ..+|+|+|++|..++.|++++..++.+    ..++....+.. .
T Consensus       151 lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~----~~~~~~~~~~~-~  223 (300)
T COG2264         151 LCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVE----LLVQAKGFLLL-E  223 (300)
T ss_pred             HHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCc----hhhhcccccch-h
Confidence            4566666667899999999999999999988873  238999999999999999999986632    11112222211 1


Q ss_pred             CCCCCCccEEEecCCC---CchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYV---PEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....++||+|+++-..   ..+...+.+.+||||+++++
T Consensus       224 ~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         224 VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence            2233689999998633   33558889999999999996

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.51  E-value=4.2e-13  Score=109.40  Aligned_cols=105  Identities=19%  Similarity=0.144  Sum_probs=85.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .++++.+|||+|||+|.++..++..   +..++|+|+++.++..+++++...+.     .++.+..+|+.......++||
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i~~~~~D~~~l~~~~~~~D  250 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI-----EDFFVKRGDATKLPLSSESVD  250 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC-----CCCeEEecchhcCCcccCCCC
Confidence            3678999999999999999887665   45999999999999999999988664     457889999876555567899


Q ss_pred             EEEecCCCC---------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP---------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|++++|+.               .++..+.++|+|||++++..++..
T Consensus       251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence            999987641               245778899999999998876653

This family is found exclusively in the Archaea.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.51  E-value=4e-13  Score=113.00  Aligned_cols=108  Identities=21%  Similarity=0.314  Sum_probs=88.5

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~   91 (216)
                      ...+|.+|||+|||+|..+..++...+++++|+++|+++.+++.+++++.+.++     .++.+...|+.... ...++|
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~v~~~~~Da~~l~~~~~~~f  308 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SSIEIKIADAERLTEYVQDTF  308 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhhhhhhhhccC
Confidence            357899999999999999999999876667999999999999999999988663     56889999986432 124679


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |.|+++.+..                            .++.++.+.|||||++++++++..
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            9999877641                            124677899999999999888764

>PTZ00146 fibrillarin; Provisional

Probab=99.51  E-value=5e-13  Score=105.39  Aligned_cols=114  Identities=25%  Similarity=0.342  Sum_probs=84.1

Q ss_pred             HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .+.++.-+. ..+.++.+|||+|||+|.++..++..+++...|+++|+++.+.+...+....       ..|+.++..|+
T Consensus       118 aa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da  190 (293)
T PTZ00146        118 AAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDA  190 (293)
T ss_pred             HHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCc
Confidence            344434333 2468999999999999999999999987767999999998866555444333       25788899997


Q ss_pred             CCCC---CCCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962         82 RTGL---LHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        82 ~~~~---~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ....   .....+|+|+++...++    +..++.++|||||.+++.+..
T Consensus       191 ~~p~~y~~~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika  239 (293)
T PTZ00146        191 RYPQKYRMLVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKA  239 (293)
T ss_pred             cChhhhhcccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEec
Confidence            6321   12347999999887554    345788999999999996443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.50  E-value=1.5e-13  Score=106.64  Aligned_cols=110  Identities=20%  Similarity=0.291  Sum_probs=88.0

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+. ...++.+|||+|||+|+.+..+++..+++++++++|.++++++.|++++...++    .++++++.+|+....
T Consensus        59 ~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i~~~~gda~~~L  133 (234)
T PLN02781         59 FLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKINFIQSDALSAL  133 (234)
T ss_pred             HHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHH
Confidence            333443 245678999999999999999998876667999999999999999999998775    367999999986432


Q ss_pred             C------CCCCccEEEecCC---CCchHHHHHhcCCCCeEEEEe
Q psy14962         86 L------HQAPFDAIYLSTY---VPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~------~~~~~D~i~~~~~---~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .      ..++||+|+++..   ...++..+.+.|+|||.+++.
T Consensus       134 ~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        134 DQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            1      1358999999864   344668889999999998874

>TIGR03438 probable methyltransferase

Probab=99.50  E-value=2.3e-13  Score=109.55  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=80.2

Q ss_pred             HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-C
Q psy14962          8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-L   86 (216)
Q Consensus         8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~   86 (216)
                      +.+...+.++.+|||+|||+|..+..+++.+..+.+++++|+|++|++.+++++.....    ..++.++++|+.... .
T Consensus        55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~  130 (301)
T TIGR03438        55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLAL  130 (301)
T ss_pred             HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhh
Confidence            33333456778999999999999999998864246899999999999999998765321    235677899986432 1


Q ss_pred             CCC----CccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         87 HQA----PFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        87 ~~~----~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...    ...+++++..+.+        +++++++.|+|||.+++......
T Consensus       131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~  181 (301)
T TIGR03438       131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK  181 (301)
T ss_pred             hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence            111    2234444444432        56889999999999998665443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.49  E-value=1.1e-12  Score=99.35  Aligned_cols=105  Identities=23%  Similarity=0.303  Sum_probs=81.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D   92 (216)
                      +.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.+++++...+     ..+++++.+|+...... ...+|
T Consensus        38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFG-----VKNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCeEEEECchHHHHhhCCCCCC
Confidence            4678999999999999999998763 45799999999999999999988755     35788999887532211 12357


Q ss_pred             EEEecCC--CCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTY--VPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .++....  +..++..+.+.|+|||++++.....
T Consensus       112 ~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        112 RVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             EEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            7766543  2457789999999999999987654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.49  E-value=3.2e-13  Score=103.93  Aligned_cols=106  Identities=26%  Similarity=0.318  Sum_probs=86.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~   91 (216)
                      .....+|||+|||+|.++..++++..+ ++++++|+++++.+.|++++..+.+    ..++++++.|+.....  ...+|
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri~v~~~Di~~~~~~~~~~~f  116 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPL----EERIQVIEADIKEFLKALVFASF  116 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcc----hhceeEehhhHHHhhhccccccc
Confidence            344789999999999999999998643 7999999999999999999887654    4899999999874432  23579


Q ss_pred             cEEEecCCCCc------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPE------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|+|++|+..                        +++...++||+||.+.+..+..
T Consensus       117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e  173 (248)
T COG4123         117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE  173 (248)
T ss_pred             CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence            99999999621                        3467779999999999876655

>PRK05785 hypothetical protein; Provisional

Probab=99.49  E-value=5.2e-13  Score=103.16  Aligned_cols=93  Identities=13%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962          7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus         7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (216)
                      ++.+.....++.+|||+|||||..+..+++..  +.+|+|+|+|++|++.|+++             ..++++|++..+.
T Consensus        42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~lp~  106 (226)
T PRK05785         42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA-------------DDKVVGSFEALPF  106 (226)
T ss_pred             HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-------------cceEEechhhCCC
Confidence            34443333457899999999999999998875  35999999999999998753             1346788876666


Q ss_pred             CCCCccEEEecCCCCc------hHHHHHhcCCCC
Q psy14962         87 HQAPFDAIYLSTYVPE------IPYSILLQLKPG  114 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~------~~~~~~~~L~~g  114 (216)
                      .+++||+|++...+++      .++++.++|||.
T Consensus       107 ~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        107 RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            7789999999988865      468999999994

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.49  E-value=7e-13  Score=105.80  Aligned_cols=103  Identities=23%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++++...++    ..++.++.+|+.... ..++||+|+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~----~~~i~~~~~D~~~~~-~~~~fD~Iv  194 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGL----EDRVTLIQSDLFAAL-PGRKYDLIV  194 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhcc-CCCCccEEE
Confidence            45789999999999999999875 456999999999999999999987653    257899999986443 345799999


Q ss_pred             ecCCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++.+..                               .++..+.++|+|||++++.....
T Consensus       195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~  254 (284)
T TIGR03533       195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS  254 (284)
T ss_pred             ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            986631                               12456678999999999876643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.49  E-value=6e-13  Score=112.29  Aligned_cols=106  Identities=27%  Similarity=0.370  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~   89 (216)
                      ..+|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...|.     .++.++++|+....    ...+
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v~~~~~D~~~~~~~~~~~~~  324 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSIKILAADSRNLLELKPQWRG  324 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeEEEEeCChhhcccccccccc
Confidence            56889999999999999999999876557999999999999999999988663     67899999986543    2246


Q ss_pred             CccEEEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||.|+++.+.                            ..++.++.+.|||||++++++++.
T Consensus       325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            79999987652                            123577889999999999887655

>PRK14967 putative methyltransferase; Provisional

Probab=99.49  E-value=6.2e-13  Score=102.73  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++...+      .++.++.+|+.... ..++||+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~~-~~~~fD~  104 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARAV-EFRPFDV  104 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhhc-cCCCeeE
Confidence            567889999999999999998876 2 2489999999999999999887654      35788888876432 3568999


Q ss_pred             EEecCCCC---------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP---------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.++.                           .+++.+.++|+|||++++.....
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            99986532                           13466789999999999865443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.49  E-value=9.7e-13  Score=111.36  Aligned_cols=106  Identities=25%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++...+.     .++.++.+|+.... ..++||+
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~v~~~~~Da~~~~-~~~~fD~  321 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TIIETIEGDARSFS-PEEQPDA  321 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----CeEEEEeCcccccc-cCCCCCE
Confidence            56889999999999999999998876556999999999999999999988663     57899999986543 3467999


Q ss_pred             EEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++.+.                            ..++..+.+.|+|||++++++++..
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            9987542                            0145778899999999999887764

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.1e-12  Score=103.01  Aligned_cols=99  Identities=23%  Similarity=0.248  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+.+|||+|||.|.+++.+++.. |..+++.+|.+...++.|++++..++.     .+..+...|......  ++||.|+
T Consensus       158 ~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~-----~~~~v~~s~~~~~v~--~kfd~Ii  229 (300)
T COG2813         158 LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGV-----ENTEVWASNLYEPVE--GKFDLII  229 (300)
T ss_pred             CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCC-----CccEEEEeccccccc--ccccEEE
Confidence            44599999999999999999985 578999999999999999999998763     344566677654433  3899999


Q ss_pred             ecCCCCc-----------hHHHHHhcCCCCeEEEEeec
Q psy14962         96 LSTYVPE-----------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        96 ~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +++|++.           ++....+.|++||.|.+...
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            9999964           45778899999999988765

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.48  E-value=8.3e-13  Score=98.45  Aligned_cols=106  Identities=19%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+. .+ ++.++||+|||.|..+..+|++   |..|+++|.|+..++.+++.....+      -+++....|....
T Consensus        21 ~v~~a~~-~~-~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~------l~i~~~~~Dl~~~   89 (192)
T PF03848_consen   21 EVLEAVP-LL-KPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG------LDIRTRVADLNDF   89 (192)
T ss_dssp             HHHHHCT-TS--SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCB
T ss_pred             HHHHHHh-hc-CCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC------ceeEEEEecchhc
Confidence            3444443 33 5679999999999999999998   6799999999999999988877755      3488899997654


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .. .+.||+|++...+..        +.+.+.+.++|||++++.+.
T Consensus        90 ~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   90 DF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             S--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            44 357999998655533        45788899999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.47  E-value=1.1e-12  Score=107.56  Aligned_cols=105  Identities=23%  Similarity=0.235  Sum_probs=88.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D   92 (216)
                      ..+..+||||||+|..+..+|+.. |+..++|+|+++.++..+.+++...++     .|+.++.+|+...  ..+++++|
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL-----~NV~~i~~DA~~ll~~~~~~s~D  194 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL-----KNLLIINYDARLLLELLPSNSVE  194 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHhhhhCCCCcee
Confidence            346789999999999999999985 678999999999999999999887653     6899999998532  34567899


Q ss_pred             EEEecCCCCc------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPE------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .|+++.+.+|            ++..+.++|+|||.+.+.+.+..
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~  239 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL  239 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence            9999887653            57889999999999999877664

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.47  E-value=1.9e-12  Score=100.74  Aligned_cols=104  Identities=28%  Similarity=0.384  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+.    ..++.++..|........++||+|
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~I  125 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGNVEFVQGDAEALPFPDNSFDAV  125 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccCeEEEecccccCCCCCCCccEE
Confidence            4678999999999999999998864346999999999999999998765321    256889999987655445789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++...+++      ++..+.+.|+|||.+++...
T Consensus       126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             EEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            98776643      56888999999999988644

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.47  E-value=2e-13  Score=108.62  Aligned_cols=106  Identities=27%  Similarity=0.389  Sum_probs=77.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.....+|.+|||+|||||.+++..++..  ..+|+++|++|..++.|++++..++++    .++.+.  ... .
T Consensus       150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~--~~~-~  220 (295)
T PF06325_consen  150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVE----DRIEVS--LSE-D  220 (295)
T ss_dssp             HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEES--CTS-C
T ss_pred             HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEE--Eec-c
Confidence            3455555556789999999999999999988873  238999999999999999999988752    344332  111 1


Q ss_pred             CCCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      . ..++||+|+++-...-   +...+.++|+|||+++++
T Consensus       221 ~-~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  221 L-VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             T-CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred             c-ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence            1 2378999998876543   456778999999999996

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.47  E-value=6.7e-13  Score=104.20  Aligned_cols=102  Identities=30%  Similarity=0.388  Sum_probs=74.8

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+.....++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.|++++..+++    ..++.+..++     
T Consensus       109 ~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~----~~~~~~~~~~-----  177 (250)
T PRK00517        109 CLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGV----ELNVYLPQGD-----  177 (250)
T ss_pred             HHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC----CceEEEccCC-----
Confidence            34444434568899999999999999877765 32 3699999999999999999887542    1223322222     


Q ss_pred             CCCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .+||+|+++....   .++..+.++|+|||+++++.
T Consensus       178 ---~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        178 ---LKADVIVANILANPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             ---CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               1699999876543   35578899999999999963

>PRK06922 hypothetical protein; Provisional

Probab=99.47  E-value=5.4e-13  Score=114.81  Aligned_cols=101  Identities=22%  Similarity=0.319  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      .++.+|||+|||+|..+..+++.. ++.+++|+|+|+.|++.|+++....+      .++.++++|.....  ..+++||
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~fedeSFD  489 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSSFEKESVD  489 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccccCCCCEE
Confidence            468899999999999998888875 56799999999999999998765432      46788889976533  3467899


Q ss_pred             EEEecCCCCc-------------------hHHHHHhcCCCCeEEEEeec
Q psy14962         93 AIYLSTYVPE-------------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        93 ~i~~~~~~~~-------------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +|+++..+++                   +++++.++|||||.+++...
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            9998765542                   35788899999999999764

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.46  E-value=3.9e-13  Score=98.26  Aligned_cols=102  Identities=27%  Similarity=0.387  Sum_probs=76.1

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      .+..+.....++.+|||+|||+|.++..+++.   +.+++++|+++.+++.      .         +......+.....
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~   73 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK------R---------NVVFDNFDAQDPP   73 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH------T---------TSEEEEEECHTHH
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh------h---------hhhhhhhhhhhhh
Confidence            33444333578899999999999999988665   3499999999999877      1         1223333222233


Q ss_pred             CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...++||+|++...+++      +++.+.++|||||++++.++...
T Consensus        74 ~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   74 FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            34678999999999877      45899999999999999877653

...

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.46  E-value=1.8e-12  Score=106.94  Aligned_cols=111  Identities=18%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-
Q psy14962          7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-   85 (216)
Q Consensus         7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-   85 (216)
                      ++.+...+.++.+|||+|||+|.++..+++.. ++.+++++|+|+.+++.|++++...+      .++.++.+|+.... 
T Consensus       242 Ve~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi~gDl~e~~l  314 (423)
T PRK14966        242 VEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------ARVEFAHGSWFDTDM  314 (423)
T ss_pred             HHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEcchhcccc
Confidence            33333334566799999999999999988764 45699999999999999999987754      47899999986432 


Q ss_pred             CCCCCccEEEecCCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLSTYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...++||+|+++.|.-                               .+.+.+.+.|+|||.+++.....
T Consensus       315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~  384 (423)
T PRK14966        315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD  384 (423)
T ss_pred             ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence            2245799999988751                               12245567999999998866543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.46  E-value=2.2e-12  Score=101.26  Aligned_cols=100  Identities=27%  Similarity=0.288  Sum_probs=80.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...++     .++.++.+|+.... ..++||+|+
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~-~~~~fD~Vi  159 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-----DNVTFLQSDWFEPL-PGGKFDLIV  159 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CeEEEEECchhccC-cCCceeEEE
Confidence            45689999999999999999875 456999999999999999999887553     57899999986533 356899999


Q ss_pred             ecCCCC--------------------------------chHHHHHhcCCCCeEEEEeec
Q psy14962         96 LSTYVP--------------------------------EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        96 ~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++.++.                                .+++.+.++|+|||.+++...
T Consensus       160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            987642                                124577789999999998643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.46  E-value=2.3e-14  Score=96.56  Aligned_cols=91  Identities=26%  Similarity=0.300  Sum_probs=58.7

Q ss_pred             EEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCccEEEecC
Q psy14962         21 LDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFDAIYLST   98 (216)
Q Consensus        21 ldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~~~   98 (216)
                      ||+|||+|..+..+++.. +..+++++|+|+.+++.+++++....     ..+......+......  ..++||+|++..
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELG-----NDNFERLRFDVLDLFDYDPPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-----CcceeEEEeecCChhhcccccccceehhhh
Confidence            799999999999999886 56799999999999988888887743     2333344433332221  125899999999


Q ss_pred             CCCch------HHHHHhcCCCCeEE
Q psy14962         99 YVPEI------PYSILLQLKPGGRL  117 (216)
Q Consensus        99 ~~~~~------~~~~~~~L~~gG~l  117 (216)
                      .++++      +++++++|+|||.|
T Consensus        75 vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   75 VLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            98774      58889999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14968 putative methyltransferase; Provisional

Probab=99.44  E-value=1.5e-12  Score=97.82  Aligned_cols=103  Identities=23%  Similarity=0.242  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.   +.+++++|.++.+++.+++++...+..   ..++.++..|...... ..+||+|
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~~~d~~~~~~-~~~~d~v   94 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR---NNGVEVIRSDLFEPFR-GDKFDVI   94 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEecccccccc-ccCceEE
Confidence            57889999999999999999887   359999999999999999988765421   1127888888765443 3479999


Q ss_pred             EecCCCCc---------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPE---------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~---------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++.++..                           +++++.++|+|||.+++.....
T Consensus        95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            98766421                           4578889999999998876543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.44  E-value=1.2e-13  Score=101.83  Aligned_cols=99  Identities=21%  Similarity=0.286  Sum_probs=79.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~   90 (216)
                      -++||.+|||+|||.|.+...+.+..  +.+.+|+|++++.+..+.++            .++++.+|.....  .++++
T Consensus        10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~s   75 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQS   75 (193)
T ss_pred             HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCC
Confidence            46789999999999999998888763  56999999999988766543            4778999987544  45789


Q ss_pred             ccEEEecCCCCchH---HHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVPEIP---YSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||.|+++..++.+.   .-+.+.|+-|...+++.++..
T Consensus        76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg  113 (193)
T PF07021_consen   76 FDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFG  113 (193)
T ss_pred             ccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence            99999999987643   345566778889999988875

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.44  E-value=1.1e-12  Score=103.63  Aligned_cols=107  Identities=17%  Similarity=0.183  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCCCch----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHH----hCCC---------------
Q psy14962         15 QEGAKVLDIGSGSGF----MSCVFAELVGK----TGRVFGVEHMREQCEDAWETVMR----IRPD---------------   67 (216)
Q Consensus        15 ~~~~~vldiG~G~G~----~~~~l~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~----~~~~---------------   67 (216)
                      .++.+|+|+|||+|.    +++.+++....    +.+|+|+|+|+.+++.|++..-.    .++.               
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    45555554431    46899999999999999875310    0000               


Q ss_pred             ---CCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         68 ---LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        68 ---~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                         .....++.|...|+.......++||+|+|...+.+        +++.+.+.|+|||++++..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence               00013688999998766555678999999887643        5578899999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=4.1e-12  Score=107.03  Aligned_cols=104  Identities=26%  Similarity=0.344  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~   91 (216)
                      ..+|.+|||+|||+|..+..+++..+ ++.|+++|.++.+++.+++++...+.      ++.++++|+....  ...++|
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~~~~~~f  314 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQWWDGQPF  314 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhhcccCCC
Confidence            57899999999999999999998863 36999999999999999999988652      4688899986432  234679


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |.|+++.+..                            .++..+.+.|||||++++++++.
T Consensus       315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9999877631                            24567778999999999987655

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.44  E-value=1.5e-12  Score=104.93  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=67.6

Q ss_pred             HHHHHHhccc-CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          4 ARIIELLEPK-IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         4 ~~~~~~l~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ..+++.+... ..++.+|||+|||+|.++..+++.   +.+|+++|+|+.|++.|+++....+.......++.+...|..
T Consensus       131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            3344554321 125789999999999999999986   459999999999999999987653210011245788888864


Q ss_pred             CCCCCCCCccEEEecCCCCch
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEI  103 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~  103 (216)
                      ..   .++||+|++...+.++
T Consensus       208 ~l---~~~fD~Vv~~~vL~H~  225 (315)
T PLN02585        208 SL---SGKYDTVTCLDVLIHY  225 (315)
T ss_pred             hc---CCCcCEEEEcCEEEec
Confidence            32   4679999998876553

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.44  E-value=1e-12  Score=100.32  Aligned_cols=96  Identities=20%  Similarity=0.196  Sum_probs=75.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--------   85 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------   85 (216)
                      ++++.+|||+|||+|.++..+++..++.+.|+++|+++ +        ..       ..++.++++|+....        
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~  112 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-------IVGVDFLQGDFRDELVLKALLER  112 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-------CCCcEEEecCCCChHHHHHHHHH
Confidence            57889999999999999999999876667999999988 1        01       245889999987532        


Q ss_pred             CCCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 LHQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...++||+|+++....                 .++..+.++|+|||.+++.++...
T Consensus       113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence            3457899999976421                 245788899999999999766554

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.43  E-value=4.6e-12  Score=99.34  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAI   94 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i   94 (216)
                      +.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++++..+        +++++.+|+......  .++||+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~--------~~~~~~~D~~~~l~~~~~~~fDlV  157 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA--------GGTVHEGDLYDALPTALRGRVDIL  157 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--------CCEEEEeechhhcchhcCCCEeEE
Confidence            4589999999999999998874 3468999999999999999998763        257888887643321  2579999


Q ss_pred             EecCCCC--------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVP--------------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++.+..                                .++..+.++|+|||.+++.....
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            9998752                                12345568999999999875543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.43  E-value=3.8e-12  Score=107.83  Aligned_cols=106  Identities=25%  Similarity=0.276  Sum_probs=86.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D   92 (216)
                      +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...+.     .++.++++|+..... -.++||
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v~~~~~D~~~~~~~~~~~fD  322 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNIETKALDARKVHEKFAEKFD  322 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeCCcccccchhcccCC
Confidence            56789999999999999999999875567999999999999999999988663     568999999865321 126799


Q ss_pred             EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+..                            .++..+.+.|||||.+++++.+.
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            999987621                            14567789999999999876654

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.43  E-value=2.8e-12  Score=103.29  Aligned_cols=101  Identities=24%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      .+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...++    ..++.++++|+.... +.++||+|+++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~~~l-~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGL----EDRVTLIESDLFAAL-PGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence            689999999999999999874 457999999999999999999987653    246999999976433 24579999998


Q ss_pred             CCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         98 TYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        98 ~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .|..                               .++..+.+.|+|||.+++.....
T Consensus       209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            6531                               12467778999999999976544

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.43  E-value=5.1e-12  Score=97.31  Aligned_cols=102  Identities=26%  Similarity=0.296  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++..+...+++++|+++.++..++++...       ..++++..+|........++||+|
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~~~~~~~~~D~i  110 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEALPFEDNSFDAV  110 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhcCCCCCCcEEEE
Confidence            4788999999999999999998864325899999999999999887641       257889999987655445789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ++...+++      +++.+.+.|+|||++++....
T Consensus       111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            98776644      568889999999999986543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.42  E-value=6.3e-12  Score=99.55  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCCCchHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMS-CVFAELVGKTGRVFGVEHMREQCEDAWETVMR-IRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ++.+|+|||||+|.++ ..+++...++++++++|.++++++.|++.+.. .++    ..+++|..+|+.......+.||+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----~~rV~F~~~Da~~~~~~l~~FDl  198 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----SKRMFFHTADVMDVTESLKEYDV  198 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----cCCcEEEECchhhcccccCCcCE
Confidence            6789999999987554 44454445677999999999999999998854 443    36799999998764433467999


Q ss_pred             EEecCCCC-------chHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVP-------EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~-------~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++.....       .+++++.+.|+|||.+++-..+
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~  235 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH  235 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence            99994221       2568999999999999997643

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.42  E-value=4.6e-12  Score=96.35  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|..+..+++.. ++.+++|+|+|+++++.|+++.          .++.+..+|+.. +..+++||
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD  107 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFD  107 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEE
Confidence            35677899999999999999998874 3569999999999999998753          346778888766 44567899


Q ss_pred             EEEecCCCCch--------HHHHHhcCCCCeEEEEeec
Q psy14962         93 AIYLSTYVPEI--------PYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        93 ~i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  122 (216)
                      +|++...++++        ++++.+++  ++++++...
T Consensus       108 ~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~  143 (204)
T TIGR03587       108 LVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY  143 (204)
T ss_pred             EEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence            99998887653        24555554  445555443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.41  E-value=7.5e-12  Score=100.05  Aligned_cols=101  Identities=24%  Similarity=0.251  Sum_probs=80.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      .+|||+|||+|.++..++... +..+|+++|+|+.+++.|++++...++    ..++.++.+|+.... ...+||+|+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~----~~~v~~~~~d~~~~~-~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQL----EHRVEFIQSNLFEPL-AGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhccC-cCCCccEEEEC
Confidence            689999999999999999875 456999999999999999999887653    245899999986543 23479999998


Q ss_pred             CCCC-------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         98 TYVP-------------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        98 ~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+..                               .++..+.++|+|||.+++.....
T Consensus       190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            6541                               12356678999999999977655

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.41  E-value=3.9e-12  Score=97.25  Aligned_cols=103  Identities=23%  Similarity=0.230  Sum_probs=76.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC----------CCCCCeEEEeccCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL----------LNDGRLHLRCRDGRTG   84 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~d~~~~   84 (216)
                      .++.+|||+|||.|..+..+|.+   +.+|+|+|+|+.+++.+.+..   +...          ....+++++++|+...
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEccCCCC
Confidence            57789999999999999999987   669999999999999754321   1100          0124688999998754


Q ss_pred             CCC-CCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLH-QAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~-~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ... .++||.|+-...+.+        ....+.++|||||++++.+..
T Consensus       107 ~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       107 TAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            432 356999987665533        457889999999987776543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.41  E-value=5.2e-12  Score=93.41  Aligned_cols=106  Identities=17%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..       ..+++++.+|+.
T Consensus         2 ~~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~   69 (169)
T smart00650        2 IDKIVRAAN--LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDAL   69 (169)
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchh
Confidence            456667664  567889999999999999999987   34999999999999999988754       257899999998


Q ss_pred             CCCCCCCCccEEEecCCCCch---HHHHHhc--CCCCeEEEEe
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEI---PYSILLQ--LKPGGRLVCG  120 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~---~~~~~~~--L~~gG~lv~~  120 (216)
                      .....+..||.|+++.+++..   +..+.+.  +.++|.+++.
T Consensus        70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence            665545569999999988643   2333322  3366777664

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.41  E-value=6.3e-12  Score=105.92  Aligned_cols=107  Identities=23%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~   91 (216)
                      ..+|.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++.+.++    ..++.+..+|......  ..++|
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~----~~~v~~~~~d~~~~~~~~~~~~f  310 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL----TIKAETKDGDGRGPSQWAENEQF  310 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEecccccccccccccccc
Confidence            56889999999999999999998875 56999999999999999999988663    1123335556542221  35679


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |.|+++.+..                            .++..+.++|||||++++++++..
T Consensus       311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            9999865421                            145677899999999999887763

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02476 O-methyltransferase

Probab=99.40  E-value=2.6e-12  Score=101.18  Aligned_cols=110  Identities=15%  Similarity=0.206  Sum_probs=88.9

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+. ...+..+|||+|+++|+.++++++..++++.++++|.+++..+.|++++.+.|+    .++++++.+|+....
T Consensus       109 lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I~li~GdA~e~L  183 (278)
T PLN02476        109 LLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKVNVKHGLAAESL  183 (278)
T ss_pred             HHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHH
Confidence            334443 245678999999999999999999876677999999999999999999999886    368999999975422


Q ss_pred             C------CCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         86 L------HQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~------~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      .      ..++||+|+.+..-..   .++.+.+.|+|||.+++.
T Consensus       184 ~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        184 KSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             HHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            1      1358999999988543   557888999999999884

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=8.1e-12  Score=100.97  Aligned_cols=101  Identities=15%  Similarity=0.089  Sum_probs=81.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.. |+.+++++|. +.+++.+++++...++    .++++++.+|+.....+  .+|+
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv~~~~~d~~~~~~~--~~D~  218 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKESYP--EADA  218 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc----cceEEEEecCccCCCCC--CCCE
Confidence            4677899999999999999999985 5679999997 7899999998887664    36799999998753332  3699


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...++.        +++++++.|+|||++++...
T Consensus       219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            987776542        46788999999999999754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.40  E-value=3.3e-12  Score=108.09  Aligned_cols=112  Identities=22%  Similarity=0.260  Sum_probs=86.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++..   .+|+|+|.|+.+++.|++++...+.     .++.++.+|+.
T Consensus       286 ~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~~~~~d~~  355 (443)
T PRK13168        286 VARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL-----DNVTFYHANLE  355 (443)
T ss_pred             HHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEeChH
Confidence            444555553  4678899999999999999999873   4999999999999999999887653     57999999986


Q ss_pred             CCC----CCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         83 TGL----LHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        83 ~~~----~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...    ...++||+|+++.+...   .++.+.+ ++|++.++++|.+..
T Consensus       356 ~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~t  404 (443)
T PRK13168        356 EDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPAT  404 (443)
T ss_pred             HhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHH
Confidence            432    12357999999988654   3344444 689999999986654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.38  E-value=4.6e-12  Score=96.12  Aligned_cols=111  Identities=26%  Similarity=0.417  Sum_probs=89.5

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRT   83 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~   83 (216)
                      .++..+. ......+|||+|++.|+.+++++......++++.+|.++++.+.|++++++.+.+    +++.++. +|...
T Consensus        49 ~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~  123 (219)
T COG4122          49 ALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALD  123 (219)
T ss_pred             HHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHH
Confidence            3444444 2457789999999999999999999865679999999999999999999998863    5577888 47654


Q ss_pred             CCC--CCCCccEEEecCCC---CchHHHHHhcCCCCeEEEEe
Q psy14962         84 GLL--HQAPFDAIYLSTYV---PEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 ~~~--~~~~~D~i~~~~~~---~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...  ..++||+||.+..-   +..++.+.+.|+|||.+++.
T Consensus       124 ~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         124 VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            333  25789999998774   44678888999999999984

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.38  E-value=9.5e-13  Score=99.75  Aligned_cols=110  Identities=23%  Similarity=0.363  Sum_probs=87.0

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+.. .....+||||||++|+.++.+++.++++++++.+|.+++..+.|++.+.+.|+    .++++++.+|+....
T Consensus        36 lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I~~~~gda~~~l  110 (205)
T PF01596_consen   36 LLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRIEVIEGDALEVL  110 (205)
T ss_dssp             HHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGEEEEES-HHHHH
T ss_pred             HHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcEEEEEeccHhhH
Confidence            3444432 34567999999999999999999887778999999999999999999998775    368999999975321


Q ss_pred             C------CCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         86 L------HQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~------~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      .      ..++||+|+.+..-..   .++.+.++|+|||.+++.
T Consensus       111 ~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  111 PELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             HHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            1      1358999999988654   456778999999999985

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=1.8e-11  Score=97.50  Aligned_cols=102  Identities=26%  Similarity=0.273  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. .    ...++.++.+|...... .++||+
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~-~----~~~~i~~~~~d~~~~~~-~~~fD~  178 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH-G----LGARVEFLQGDWFEPLP-GGRFDL  178 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-C----CCCcEEEEEccccCcCC-CCceeE
Confidence            3567899999999999999999885 456999999999999999998872 1    13579999999854332 468999


Q ss_pred             EEecCCCCc--------------------------------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------------------------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------------------------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |+++.+...                                ++..+.++|+|||++++...
T Consensus       179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            999876421                                23455689999999998654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.37  E-value=8.6e-12  Score=106.69  Aligned_cols=99  Identities=18%  Similarity=0.261  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D   92 (216)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++....       ..++.++++|+..  ...+.++||
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH-------YKNVKFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccccccCCCCCCEE
Confidence            357799999999999999999873   4899999999999887653221       2578899999853  223457899


Q ss_pred             EEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++..++++        ++..+.++|+|||++++....
T Consensus       106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336        106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9999887654        457888999999999986543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.37  E-value=9.2e-12  Score=100.96  Aligned_cols=110  Identities=14%  Similarity=0.070  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i   94 (216)
                      ++.+|||+|||+|.++..+++.   +.+|+|+|.++.+++.|++++...++     .+++++.+|+..... ..+.||+|
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v~~~~~D~~~~~~~~~~~~D~V  244 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-----TNVQFQALDSTQFATAQGEVPDLV  244 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEEcCHHHHHHhcCCCCeEE
Confidence            5689999999999999999986   35999999999999999999988653     579999999864322 23469999


Q ss_pred             EecCCCCchH---HHHHhcCCCCeEEEEeecCCCCcceEEEE
Q psy14962         95 YLSTYVPEIP---YSILLQLKPGGRLVCGVGKSKSYHRMTVI  133 (216)
Q Consensus        95 ~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~~~~~~~  133 (216)
                      +++.+-..+.   ......++|++.++++|.+......+..+
T Consensus       245 v~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l  286 (315)
T PRK03522        245 LVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL  286 (315)
T ss_pred             EECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence            9998865432   23344567888888888776544444333

>PRK00811 spermidine synthase; Provisional

Probab=99.36  E-value=1e-11  Score=99.11  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      ..+.+||++|||+|..+..++++.+ ..+|+++|+++.+++.|++.+...........+++++.+|+..... ..++||+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            3567999999999999999987632 3589999999999999999876432111124678999999864332 3568999


Q ss_pred             EEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++...+          .+++.+++.|+|||.+++...++
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~  194 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP  194 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            99976432          24578899999999999876554

>PRK06202 hypothetical protein; Provisional

Probab=99.35  E-value=1.1e-11  Score=96.39  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=70.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .++.+|||+|||+|.++..+++..   +++.+++|+|+++++++.|+++...        .++.+...+.......+++|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence            466799999999999998887643   3446999999999999999887543        34566666544333345789


Q ss_pred             cEEEecCCCCch--------HHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPEI--------PYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|+++..++++        ++++.++++  |.+++..
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence            999999888663        456667776  4555543

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.35  E-value=3.4e-12  Score=94.38  Aligned_cols=96  Identities=22%  Similarity=0.241  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .-.+++|+|||.|.++..++.+.   ..++++|+++..++.|++++..       ..++.+...|+.... +.++||+|+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~-P~~~FDLIV  111 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFW-PEGRFDLIV  111 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----SS-EEEEE
T ss_pred             ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCC-CCCCeeEEE
Confidence            34689999999999999999984   3899999999999999999876       368999999986544 467899999


Q ss_pred             ecCCCCc---------hHHHHHhcCCCCeEEEEeec
Q psy14962         96 LSTYVPE---------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        96 ~~~~~~~---------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++..+..         +...+...|+|||.+|+...
T Consensus       112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9887644         34677789999999999643

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.35  E-value=2.1e-11  Score=92.02  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=81.5

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+. ...++.+|||+|||+|.++..++...  ..+|+++|.++.+++.+++++...+.     .++.++.+|+....
T Consensus        44 l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v~~~~~D~~~~l  115 (199)
T PRK10909         44 LFNWLA-PVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKA-----GNARVVNTNALSFL  115 (199)
T ss_pred             HHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEEchHHHHH
Confidence            344443 22467899999999999998765543  35999999999999999999988663     57899999976433


Q ss_pred             C-CCCCccEEEecCCCCc-hH----HHHHh--cCCCCeEEEEeecCC
Q psy14962         86 L-HQAPFDAIYLSTYVPE-IP----YSILL--QLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~-~~~~~D~i~~~~~~~~-~~----~~~~~--~L~~gG~lv~~~~~~  124 (216)
                      . ...+||+|++++|+.. +.    ..+.+  +|+|++.+++.+...
T Consensus       116 ~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        116 AQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             hhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            2 2346999999999643 22    33333  378899999887654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.35  E-value=1.3e-11  Score=92.90  Aligned_cols=96  Identities=25%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      .+.++.+|||+|||+|.++..+++...+..+++++|+++.+         .       ..++.++..|.....       
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~   92 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRE   92 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHH
Confidence            35789999999999999999998886555689999999864         1       145778888875422       


Q ss_pred             -CCCCCccEEEecCCC-----------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 -LHQAPFDAIYLSTYV-----------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                       ...++||+|+++...                 ..++..+.++|+|||++++.....
T Consensus        93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence             234579999986431                 125577889999999999965444

>KOG4300|consensus

Probab=99.35  E-value=3.7e-12  Score=94.11  Aligned_cols=97  Identities=18%  Similarity=0.214  Sum_probs=77.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeE-EEeccCCCCC-CCCCCccEEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH-LRCRDGRTGL-LHQAPFDAIY   95 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~i~   95 (216)
                      ..|||+|||||.--...-..  |..+|+++|+++.|.+++.+.+++..     ..++. |++++.+..+ .+++++|+|+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             cceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhcCcccccCCeeeEE
Confidence            35799999999874443322  56699999999999999999887743     35565 8899988665 4678999999


Q ss_pred             ecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962         96 LSTYVPE------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +...+-.      .+.++.++|||||++++..
T Consensus       151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            8877633      6789999999999999864

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2.1e-11  Score=96.98  Aligned_cols=98  Identities=27%  Similarity=0.268  Sum_probs=78.7

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecC
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST   98 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~   98 (216)
                      +|||+|||||.+++.+++.. +...|+++|+|+..++.|++++..+++     .++.++..|......  ++||+|++++
T Consensus       113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l-----~~~~~~~~dlf~~~~--~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL-----VRVLVVQSDLFEPLR--GKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC-----ccEEEEeeecccccC--CceeEEEeCC
Confidence            79999999999999999985 457999999999999999999998763     556666667654443  3899999998


Q ss_pred             CC---C----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         99 YV---P----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        99 ~~---~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |.   .                            .++..+.+.|+|||.+++.....
T Consensus       185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~  241 (280)
T COG2890         185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT  241 (280)
T ss_pred             CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence            85   1                            02356778999999999976643

>KOG1541|consensus

Probab=99.33  E-value=1.1e-11  Score=92.44  Aligned_cols=111  Identities=25%  Similarity=0.264  Sum_probs=83.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |.++.++++...-.....|||||||+|..+..+...   +...+|+|+|+.|++.|.+.--.          -+++.+|+
T Consensus        36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~DM  102 (270)
T KOG1541|consen   36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE----------GDLILCDM  102 (270)
T ss_pred             HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh----------cCeeeeec
Confidence            566777777622223678999999999998877755   45899999999999999874222          35788887


Q ss_pred             CCC-CCCCCCccEEEecCCCCch-----------------HHHHHhcCCCCeEEEEeecCCC
Q psy14962         82 RTG-LLHQAPFDAIYLSTYVPEI-----------------PYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        82 ~~~-~~~~~~~D~i~~~~~~~~~-----------------~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      -.. +...++||.+|+...++++                 +..++.+|++|++.+++.....
T Consensus       103 G~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen  164 (270)
T KOG1541|consen  103 GEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN  164 (270)
T ss_pred             CCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence            543 3467899999987776542                 3568899999999999876553

>PRK04457 spermidine synthase; Provisional

Probab=99.33  E-value=1.7e-11  Score=96.79  Aligned_cols=105  Identities=18%  Similarity=0.167  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      .++.+|||+|||+|.++..+++.. ++.+++++|+++++++.|++.+...+    ..++++++.+|+..... ..++||+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~v~~~Da~~~l~~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFEVIEADGAEYIAVHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceEEEECCHHHHHHhCCCCCCE
Confidence            456799999999999999998875 56799999999999999998875422    13678999999753322 2357999


Q ss_pred             EEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++..-          ..+++.+.+.|+|||++++.....
T Consensus       140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            9986421          236688999999999999965543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.32  E-value=2.1e-11  Score=104.49  Aligned_cols=102  Identities=18%  Similarity=0.257  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|.++..+++.. ++.+|+++|+|+.+++.|++++...++    ..++.++.+|+.... ..++||+|+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l----~~~v~~~~~D~~~~~-~~~~fDlIv  211 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV----TDRIQIIHSNWFENI-EKQKFDFIV  211 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC----ccceeeeecchhhhC-cCCCccEEE
Confidence            34689999999999999998875 457999999999999999999887553    257889999975433 245799999


Q ss_pred             ecCCCCc--------------------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         96 LSTYVPE--------------------------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        96 ~~~~~~~--------------------------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ++.+.-.                                ++..+.++|+|||.+++....
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~  271 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF  271 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence            9876310                                224666899999999986543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.32  E-value=3.7e-11  Score=93.40  Aligned_cols=101  Identities=23%  Similarity=0.283  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D   92 (216)
                      ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++....+      .++.+...+..... ...++||
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~fD  116 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEELAAEHPGQFD  116 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHHhhhhcCCCcc
Confidence            346889999999999999888876   3589999999999999998876643      35677777765332 2346899


Q ss_pred             EEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++...+++      +++.+.+.|+|||.+++....
T Consensus       117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134        117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence            9999776644      568889999999999987554

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.30  E-value=4e-11  Score=92.02  Aligned_cols=101  Identities=21%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC----------CCCCCeEEEeccCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL----------LNDGRLHLRCRDGRT   83 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~d~~~   83 (216)
                      +.++.+|||+|||.|..+..+|.+   +.+|+|+|+|+.+++.+.+   +.++..          ....++++.++|+..
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~  108 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFA  108 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccC
Confidence            356789999999999999999987   6799999999999987643   111100          012568889999875


Q ss_pred             CCCC-CCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         84 GLLH-QAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 ~~~~-~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                      .... .+.||.|+-...+.+        ....+.++|+|||++++.
T Consensus       109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            5332 257999986655433        457889999999975553

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.29  E-value=3.6e-11  Score=92.87  Aligned_cols=100  Identities=25%  Similarity=0.302  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i   94 (216)
                      .+.+|||+|||+|..+..+++.   +..++++|+++.++..+++++...+     ..++++...|....... .++||+|
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~i  116 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDP-----LLKIEYRCTSVEDLAEKGAKSFDVV  116 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcC-----CCceEEEeCCHHHhhcCCCCCccEE
Confidence            4789999999999999988875   3479999999999999999887643     13578888887543322 3689999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ++...+++      ++..+.+.|+|||.+++....
T Consensus       117 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       117 TCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             EehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence            99776543      568889999999999887554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.29  E-value=2.3e-11  Score=94.66  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=88.2

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+.. .....+|||+|+++|+.++++++..+++++++++|.+++..+.|++.+.+.|+    .++++++.+|+....
T Consensus        70 lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I~~~~G~a~e~L  144 (247)
T PLN02589         70 FLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeccHHHHH
Confidence            3444432 34567999999999999999999877778999999999999999999999775    378999999875432


Q ss_pred             CC-------CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         86 LH-------QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~-------~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      ..       .++||+|+.+..-..   .++.+.+.|+|||.+++.
T Consensus       145 ~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            11       258999999988543   457778999999999884

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.29  E-value=2.5e-11  Score=100.84  Aligned_cols=106  Identities=20%  Similarity=0.102  Sum_probs=80.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~   89 (216)
                      ..++.+|||+|||+|.+++.++..  ...+|+++|.++.+++.|++++..+++   ...+++++.+|+.....    ..+
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v~~i~~D~~~~l~~~~~~~~  292 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKL---DLSKAEFVRDDVFKLLRTYRDRGE  292 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcEEEEEccHHHHHHHHHhcCC
Confidence            346889999999999998876643  234999999999999999999988763   12478999999864321    245


Q ss_pred             CccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||+|++++|.-.               +.....++|+|||.++...++.
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~  342 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG  342 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            7999999988511               2235678999999998765543

>KOG1271|consensus

Probab=99.28  E-value=6.4e-11  Score=85.91  Aligned_cols=104  Identities=23%  Similarity=0.237  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE-
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY-   95 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~-   95 (216)
                      ..+|||+|||+|.+...+++.. -....+|+|.|+++++.|+..+.+.+.    .+.++|...|........++||+|. 
T Consensus        68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~----~n~I~f~q~DI~~~~~~~~qfdlvlD  142 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGF----SNEIRFQQLDITDPDFLSGQFDLVLD  142 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCC----CcceeEEEeeccCCcccccceeEEee
Confidence            3499999999999999998873 334699999999999999888887764    2449999999876443345566654 


Q ss_pred             --------ecCCCC-----chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 --------LSTYVP-----EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 --------~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                              .+....     -.+..+.+.|+|||++++..++..
T Consensus       143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T  185 (227)
T KOG1271|consen  143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT  185 (227)
T ss_pred             cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence                    332211     145788899999999999877663

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.26  E-value=1.4e-10  Score=89.89  Aligned_cols=78  Identities=21%  Similarity=0.278  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.   +..|+++|+++.+++.|+++....+.    ..++.+..+|...   ..++||+|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~----~~~i~~~~~d~~~---~~~~fD~v  131 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGL----AGNITFEVGDLES---LLGRFDTV  131 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCC----ccCcEEEEcCchh---ccCCcCEE
Confidence            46789999999999999999876   34799999999999999998876442    1478888888432   24679999


Q ss_pred             EecCCCCc
Q psy14962         95 YLSTYVPE  102 (216)
Q Consensus        95 ~~~~~~~~  102 (216)
                      ++...+.+
T Consensus       132 ~~~~~l~~  139 (230)
T PRK07580        132 VCLDVLIH  139 (230)
T ss_pred             EEcchhhc
Confidence            99877644

>PLN02366 spermidine synthase

Probab=99.26  E-value=1e-10  Score=94.02  Aligned_cols=108  Identities=21%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D   92 (216)
                      .+..+||++|||.|.....++++. +..+|+.+|+++.+++.+++.+...+. .+...+++++.+|+.....  ..++||
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceEEEEChHHHHHhhccCCCCC
Confidence            456899999999999999998872 235899999999999999998765321 1234689999999753321  246799


Q ss_pred             EEEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++...+          .+.+.+++.|+|||.++....++
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~  209 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESM  209 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCc
Confidence            999986543          24678999999999998865543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.26  E-value=6.4e-11  Score=89.35  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCCCCCccE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLHQAPFDA   93 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~   93 (216)
                      ...+||||||.|.+...+|+.. |+..++|+|+....+..+.+++...+     ..|+.++.+|+...   ..+++++|.
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~-----l~Nv~~~~~da~~~l~~~~~~~~v~~   91 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRG-----LKNVRFLRGDARELLRRLFPPGSVDR   91 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHT-----TSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhc-----ccceEEEEccHHHHHhhcccCCchhe
Confidence            3378999999999999999984 68899999999999999999988876     48999999998742   234678999


Q ss_pred             EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+...+-++              ++..+.++|+|||.+.+.+....
T Consensus        92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~  137 (195)
T PF02390_consen   92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE  137 (195)
T ss_dssp             EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred             EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence            999888654              56888999999999999887764

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.25  E-value=5e-11  Score=90.11  Aligned_cols=98  Identities=20%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~   90 (216)
                      .+.++.+|||+|||+|.++..+++..  ...++++|+++++++.+++            .++.++.+|+....  ..+++
T Consensus        10 ~i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~~~~~~s   75 (194)
T TIGR02081        10 LIPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLEAFPDKS   75 (194)
T ss_pred             hcCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhcccccCCCC
Confidence            45678899999999999998887663  3478999999999988753            24677888875422  34578


Q ss_pred             ccEEEecCCCCch---HHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYVPEI---PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|+++.+++++   ...+.+++++++.+++..++.
T Consensus        76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~~  112 (194)
T TIGR02081        76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPNF  112 (194)
T ss_pred             cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCCh
Confidence            9999999887664   234445566667766665443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.24  E-value=6e-11  Score=105.53  Aligned_cols=105  Identities=20%  Similarity=0.116  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      .+|.+|||+|||+|.+++.+++. + ..+|+++|.|+.+++.|++++..+++   ...+++++.+|+..... ..++||+
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v~~i~~D~~~~l~~~~~~fDl  611 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGL---SGRQHRLIQADCLAWLKEAREQFDL  611 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCC---CccceEEEEccHHHHHHHcCCCcCE
Confidence            46889999999999999999986 2 23799999999999999999988763   12478999999754221 1457999


Q ss_pred             EEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+.-                 .+...+.++|+|||.+++.+...
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            99998741                 13467778999999998876544

>PRK01581 speE spermidine synthase; Validated

Probab=99.23  E-value=1.1e-10  Score=94.77  Aligned_cols=109  Identities=19%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET--VMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~   91 (216)
                      ....+||++|||+|..+..+++.. +..+|+++|+++++++.|++.  +....-..+..++++++.+|+..... ..++|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            345699999999999988888763 345999999999999999962  21110001234789999999874332 34679


Q ss_pred             cEEEecCCCC-----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVP-----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|+++.+-+           .+.+.+++.|+|||++++...++
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp  271 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP  271 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence            9999986532           14578999999999999876555

>TIGR00417 speE spermidine synthase

Probab=99.23  E-value=1e-10  Score=92.85  Aligned_cols=107  Identities=21%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i   94 (216)
                      .+.+||++|||+|..+..+++.. +..+++++|+++++++.+++.+..... .....+++++.+|+..... ..++||+|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~-~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG-SYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc-cccCCceEEEECchHHHHHhCCCCccEE
Confidence            34599999999999998888763 235899999999999999998755321 1223578888888753221 24689999


Q ss_pred             EecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++...+          .+++.+.+.|+|||.+++...++
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~  189 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP  189 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence            9977632          24578899999999999975544

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2915|consensus

Probab=99.22  E-value=3.2e-10  Score=87.26  Aligned_cols=108  Identities=28%  Similarity=0.330  Sum_probs=91.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ++.|+.+|.  +.||++|||-|+|+|.++..+++.++|.++++.+|..+...+.|.+.++.++.    .+++.+.+-|+.
T Consensus        94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi----~~~vt~~hrDVc  167 (314)
T KOG2915|consen   94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI----GDNVTVTHRDVC  167 (314)
T ss_pred             HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC----CcceEEEEeecc
Confidence            456677775  89999999999999999999999999999999999999999999999999885    689999999986


Q ss_pred             CCC--CCCCCccEEEecCCCCc-hHHHHHhcCCCCeE
Q psy14962         83 TGL--LHQAPFDAIYLSTYVPE-IPYSILLQLKPGGR  116 (216)
Q Consensus        83 ~~~--~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~  116 (216)
                      ..-  .++..+|.|+.+.+.+| ....+.+.||.+|.
T Consensus       168 ~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  168 GSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGG  204 (314)
T ss_pred             cCCccccccccceEEEcCCChhhhhhhhHHHhhhcCc
Confidence            332  23678999999999887 34566678888775

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.22  E-value=6.5e-11  Score=98.10  Aligned_cols=102  Identities=14%  Similarity=0.048  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i   94 (216)
                      ++.+|||++||+|.++..++..   +.+|+++|.++.+++.|++++...+     ..++.++.+|+..... ...+||+|
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~-----~~~~~~~~~d~~~~~~~~~~~~D~v  304 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLG-----LDNLSFAALDSAKFATAQMSAPELV  304 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHHHhcCCCCCEE
Confidence            5679999999999999999865   3589999999999999999998865     3589999999864322 12459999


Q ss_pred             EecCCCCch----HHHHHhcCCCCeEEEEeecCCCC
Q psy14962         95 YLSTYVPEI----PYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        95 ~~~~~~~~~----~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      +++.+...+    ++.+ ..++|++.+++++.+...
T Consensus       305 i~DPPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~Tl  339 (374)
T TIGR02085       305 LVNPPRRGIGKELCDYL-SQMAPKFILYSSCNAQTM  339 (374)
T ss_pred             EECCCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHH
Confidence            999997543    2333 357899999998876543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.22  E-value=1.2e-10  Score=98.47  Aligned_cols=109  Identities=22%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+.+.+.  +.++.+|||+|||+|.++..+++..   .+|+++|.++.+++.|++++..+++     .++.++.+|+..
T Consensus       282 ~~~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~  351 (431)
T TIGR00479       282 DRALEALE--LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLET  351 (431)
T ss_pred             HHHHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHH
Confidence            34444442  4567899999999999999999873   4899999999999999999988663     689999999853


Q ss_pred             CC----CCCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962         84 GL----LHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        84 ~~----~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ..    ...++||+|+++.+-..    +++.+. .++|++.++++|..
T Consensus       352 ~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p  398 (431)
T TIGR00479       352 VLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNP  398 (431)
T ss_pred             HHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCH
Confidence            21    12356999999888533    334433 48899988887653

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.21  E-value=3e-11  Score=92.94  Aligned_cols=92  Identities=23%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ...++||||+|.|..+..++..+.   +|++.|.|+.|....+++            ..+++..+-  ....+.+||+|.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------------g~~vl~~~~--w~~~~~~fDvIs  156 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------------GFTVLDIDD--WQQTDFKFDVIS  156 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC------------CCeEEehhh--hhccCCceEEEe
Confidence            346799999999999999999864   899999999997655442            234443331  112345799999


Q ss_pred             ecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |-+.+..      +++.+++.|+|+|++++.+--|
T Consensus       157 cLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  157 CLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLP  191 (265)
T ss_pred             ehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            9888743      6799999999999999976555

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.21  E-value=3.4e-10  Score=95.76  Aligned_cols=107  Identities=25%  Similarity=0.290  Sum_probs=87.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~   91 (216)
                      ..++|.+|||+|||+|.-+..++..++..+.+++.|+++..++..++++.+.|     ..++.+...|..... ...+.|
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-----~~nv~v~~~D~~~~~~~~~~~f  184 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-----VSNVALTHFDGRVFGAALPETF  184 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCchhhhhhhchhhc
Confidence            35789999999999999999999988766799999999999999999999966     477888888876432 123579


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |.|+++.+-.                            .++....+.|||||+++.++++.
T Consensus       185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            9999887731                            13467778999999999998874

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.20  E-value=2.4e-10  Score=87.74  Aligned_cols=103  Identities=24%  Similarity=0.313  Sum_probs=87.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CCCCCCCccEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GLLHQAPFDAI   94 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~i   94 (216)
                      ..+||||||.|.....+|+. +|...++|+|+....+..|.+.+.+.++     +|+.+++.|+..   ...++++.|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l-----~Nlri~~~DA~~~l~~~~~~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL-----KNLRLLCGDAVEVLDYLIPDGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC-----CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence            57999999999999999998 5788999999999999999999988663     599999999863   33455699999


Q ss_pred             EecCCCCc--------------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         95 YLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        95 ~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      +.+.+-+|              +++.+.+.|+|||.+.+.+.+...
T Consensus       124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y  169 (227)
T COG0220         124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY  169 (227)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence            99888654              568889999999999998877643

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.20  E-value=2.7e-10  Score=76.18  Aligned_cols=95  Identities=25%  Similarity=0.270  Sum_probs=74.4

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEEEec
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAIYLS   97 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~   97 (216)
                      +|+|+|||+|..+..+++.  ...+++++|.++..+..+++.....     ...++++...|...... ..+++|+|+++
T Consensus         1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~   73 (107)
T cd02440           1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGDAEELPPEADESFDVIISD   73 (107)
T ss_pred             CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceEEEEcChhhhccccCCceEEEEEc
Confidence            5899999999999888873  3569999999999999887533221     13678888888875443 35679999999


Q ss_pred             CCCCc-------hHHHHHhcCCCCeEEEEe
Q psy14962         98 TYVPE-------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        98 ~~~~~-------~~~~~~~~L~~gG~lv~~  120 (216)
                      .++..       +++.+.+.++|||.+++.
T Consensus        74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            88754       457888999999999885

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK03612 spermidine synthase; Provisional

Probab=99.19  E-value=1.3e-10  Score=100.21  Aligned_cols=109  Identities=21%  Similarity=0.198  Sum_probs=81.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET--VMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~   91 (216)
                      +++++|||+|||+|..+..++++ ++..+++++|+++++++.++++  +...+...+..++++++.+|+..... ..++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            45679999999999999999876 2225999999999999999983  32211001223678999999874322 24689


Q ss_pred             cEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|+++.+.+.           +.+.+++.|+|||.+++...++
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~  418 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP  418 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence            99999876432           4578899999999999976555

>PHA03412 putative methyltransferase; Provisional

Probab=99.19  E-value=2.6e-10  Score=87.28  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG--KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .+.+|||+|||+|.++..+++...  +...|+++|+++.+++.|+++.          .++.++..|+..... .++||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~-~~~FDl  117 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEF-DTLFDM  117 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccc-cCCccE
Confidence            467999999999999999987642  2458999999999999999764          347889999864332 458999


Q ss_pred             EEecCCCC
Q psy14962         94 IYLSTYVP  101 (216)
Q Consensus        94 i~~~~~~~  101 (216)
                      |+++.|+.
T Consensus       118 IIsNPPY~  125 (241)
T PHA03412        118 AISNPPFG  125 (241)
T ss_pred             EEECCCCC
Confidence            99999973

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.18  E-value=2.6e-10  Score=91.39  Aligned_cols=110  Identities=24%  Similarity=0.174  Sum_probs=88.4

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR   82 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~   82 (216)
                      ++++-.++ .+.+|..|||--||||.+.+++...   +++++|+|++..|+.-|+.++..-+     .....+... |+.
T Consensus       186 AR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~-----i~~~~~~~~~Da~  256 (347)
T COG1041         186 ARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYG-----IEDYPVLKVLDAT  256 (347)
T ss_pred             HHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhC-----cCceeEEEecccc
Confidence            34444444 5789999999999999999998776   5699999999999999999998854     345555555 888


Q ss_pred             CCCCCCCCccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeec
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+..+.++|.|+++++...               +++.++++|++||++++..+
T Consensus       257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            76666668999999999622               45788899999999999766

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.18  E-value=1.7e-10  Score=94.92  Aligned_cols=104  Identities=25%  Similarity=0.168  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~   90 (216)
                      .|++||++.|=||.+++.+|..   ++ +|+++|.|...++.|++++.-+++   ...++.++++|+.....    .+.+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~---~~~~~~~i~~Dvf~~l~~~~~~g~~  290 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGL---DGDRHRFIVGDVFKWLRKAERRGEK  290 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCC---CccceeeehhhHHHHHHHHHhcCCc
Confidence            3999999999999999999876   34 999999999999999999998874   35678999999864332    3458


Q ss_pred             ccEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||+|++++|-               ..+...+.++|+|||+++++.++..
T Consensus       291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            9999999884               1245788899999999999877663

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.17  E-value=1.8e-10  Score=93.43  Aligned_cols=108  Identities=20%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-----CCCCCeEEEeccCCCC-----C
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL-----LNDGRLHLRCRDGRTG-----L   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~d~~~~-----~   85 (216)
                      ++.+|||+|||-|....-.... + -..++|+|++...++.|+++.....-..     ...-...++.+|....     .
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            7899999999998887666554 2 3499999999999999999983311000     0012456778876521     1


Q ss_pred             CC-CCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 LH-QAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 ~~-~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .. ..+||+|-|...+|.          ++.++.+.|+|||+|+.+++...
T Consensus       140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence            22 258999999988876          45889999999999999998874

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.15  E-value=9.7e-10  Score=86.05  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ..+.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.++++.          .++.++.+|+.... ...+||+|
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~-~~~kFDlI  130 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFE-SNEKFDVV  130 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhc-ccCCCcEE
Confidence            3457999999999999988887642 359999999999999988753          35789999987543 34679999


Q ss_pred             EecCCCCc--------------------------hHHHHHhcCCCCeEEEEe
Q psy14962         95 YLSTYVPE--------------------------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        95 ~~~~~~~~--------------------------~~~~~~~~L~~gG~lv~~  120 (216)
                      +++.++..                          .+.....+|+|+|.+.+.
T Consensus       131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99988743                          113445788888877665

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.14  E-value=6.9e-10  Score=85.11  Aligned_cols=105  Identities=12%  Similarity=0.019  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------H-hCCCCCCCCCeEEEeccCCCCCC-
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM------R-IRPDLLNDGRLHLRCRDGRTGLL-   86 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~------~-~~~~~~~~~~~~~~~~d~~~~~~-   86 (216)
                      .++.+||+.|||.|....+++..   +.+|+|+|+|+..++.+.+...      . .........++++.++|+..... 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~  118 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI  118 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence            46789999999999999999987   5699999999999988755210      0 00000123578999999876532 


Q ss_pred             --CCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         87 --HQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        87 --~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                        ..+.||+|+-...+..        ..+.+.++|+|||.+++.+.
T Consensus       119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence              1267999987766644        34688899999999988654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=9.9e-10  Score=80.53  Aligned_cols=76  Identities=28%  Similarity=0.370  Sum_probs=63.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      -.|.+|+|+|||||.+++..+-. |+ ..|+++|+++++++.++++..+.      ..++.++++|+...   .+.+|.+
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~---~~~~dtv  112 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDF---RGKFDTV  112 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhc---CCccceE
Confidence            35788999999999999988766 32 49999999999999999998873      37899999998654   3568999


Q ss_pred             EecCCCC
Q psy14962         95 YLSTYVP  101 (216)
Q Consensus        95 ~~~~~~~  101 (216)
                      +.+.++.
T Consensus       113 imNPPFG  119 (198)
T COG2263         113 IMNPPFG  119 (198)
T ss_pred             EECCCCc
Confidence            9999984

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.12  E-value=1.2e-09  Score=86.13  Aligned_cols=96  Identities=22%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++..       ..++.++++|+.
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~   85 (258)
T PRK14896         18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDAL   85 (258)
T ss_pred             HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccc
Confidence            345555543  567899999999999999999988   24899999999999999987754       257999999987


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLK  112 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~  112 (216)
                      ....  ..||.|+++.++......+.+.++
T Consensus        86 ~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~  113 (258)
T PRK14896         86 KVDL--PEFNKVVSNLPYQISSPITFKLLK  113 (258)
T ss_pred             cCCc--hhceEEEEcCCcccCcHHHHHHHh
Confidence            5433  248999999887643333333343

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.12  E-value=5.9e-10  Score=88.60  Aligned_cols=96  Identities=21%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..        .++.++.+|+.
T Consensus        31 ~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~   97 (272)
T PRK00274         31 LDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDAL   97 (272)
T ss_pred             HHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhh
Confidence            344555553  5678899999999999999999883   3899999999999999876532        57999999987


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQL  111 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L  111 (216)
                      .....+-.++.|+++.++.....-+.++|
T Consensus        98 ~~~~~~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274         98 KVDLSELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             cCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence            54432211588999888755444444444

>KOG2904|consensus

Probab=99.12  E-value=1.8e-09  Score=83.26  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC----C-CCCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG----L-LHQAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~-~~~~~   90 (216)
                      .+..+||+|||+|.++..++..++ ...|+++|.|+.++..|.+++.+..+    .+++.+++.+++..    . ...++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l----~g~i~v~~~~me~d~~~~~~l~~~~  222 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKL----SGRIEVIHNIMESDASDEHPLLEGK  222 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhh----cCceEEEecccccccccccccccCc
Confidence            456899999999999999999886 57999999999999999999988765    36777776655422    1 23478


Q ss_pred             ccEEEecCCCCc--------------------------------hHHHHHhcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVPE--------------------------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~~--------------------------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +|+++++.+.-.                                +..-..+.|+|||.+.+...
T Consensus       223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            999999988510                                12455589999999998765

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.10  E-value=9.1e-10  Score=88.11  Aligned_cols=98  Identities=17%  Similarity=0.183  Sum_probs=74.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++++...+.    ..++.++.+|+.
T Consensus        25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~----~~~v~ii~~Dal   95 (294)
T PTZ00338         25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPL----ASKLEVIEGDAL   95 (294)
T ss_pred             HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCC----CCcEEEEECCHh
Confidence            445555553  578899999999999999999887   34899999999999999998876431    267999999986


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQL  111 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L  111 (216)
                      ....  ..||.|+++.++......+.++|
T Consensus        96 ~~~~--~~~d~VvaNlPY~Istpil~~ll  122 (294)
T PTZ00338         96 KTEF--PYFDVCVANVPYQISSPLVFKLL  122 (294)
T ss_pred             hhcc--cccCEEEecCCcccCcHHHHHHH
Confidence            5432  35899999988765433344444

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.10  E-value=1.9e-09  Score=80.34  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCc--------EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTG--------RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~--------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      .+++..|+|-.||+|.+.++.+.......        +++|+|++++++..|++++...+.    ...+.+...|+....
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~----~~~i~~~~~D~~~l~  101 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV----EDYIDFIQWDARELP  101 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGEEEEE--GGGGG
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc----CCceEEEecchhhcc
Confidence            57889999999999999999887754322        389999999999999999988764    356889998987665


Q ss_pred             CCCCCccEEEecCCCCc--------------hHHHHHhcCCCCeEEEE
Q psy14962         86 LHQAPFDAIYLSTYVPE--------------IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~  119 (216)
                      ...+++|.|+++.++..              +.+.+.+++++...+++
T Consensus       102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen  102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT  149 (179)
T ss_dssp             GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred             cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            45678999999999743              34677788999333333

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2899|consensus

Probab=99.10  E-value=4.9e-10  Score=84.90  Aligned_cols=114  Identities=25%  Similarity=0.242  Sum_probs=76.9

Q ss_pred             HhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC----C----------------
Q psy14962          9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD----L----------------   68 (216)
Q Consensus         9 ~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~----------------   68 (216)
                      .+......+..+|||||-+|.++..+++.+++ ..++|+|+++..++.|+++++..--.    .                
T Consensus        51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~  129 (288)
T KOG2899|consen   51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ  129 (288)
T ss_pred             hccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc
Confidence            33334456778999999999999999999975 47999999999999999976531100    0                


Q ss_pred             ----------CCCCCeEEE-------eccCCCCCCCCCCccEEEecCCCC------------chHHHHHhcCCCCeEEEE
Q psy14962         69 ----------LNDGRLHLR-------CRDGRTGLLHQAPFDAIYLSTYVP------------EIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        69 ----------~~~~~~~~~-------~~d~~~~~~~~~~~D~i~~~~~~~------------~~~~~~~~~L~~gG~lv~  119 (216)
                                ..+.++.+.       ..|+.  ......||+|+|-....            .++..++++|.|||+||+
T Consensus       130 ~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  130 RNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             cccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence                      000111111       11111  12235799998755532            267899999999999999


Q ss_pred             eecCCC
Q psy14962        120 GVGKSK  125 (216)
Q Consensus       120 ~~~~~~  125 (216)
                      .-..+.
T Consensus       208 EPQpWk  213 (288)
T KOG2899|consen  208 EPQPWK  213 (288)
T ss_pred             cCCchH
Confidence            655543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.08  E-value=1e-09  Score=90.54  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---C------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---H------   87 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~------   87 (216)
                      +.+|||++||+|.++..+++..   .+|+++|.++.+++.|++++..++.     .++.++.+|+.....   .      
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v~~~~~d~~~~l~~~~~~~~~~~  278 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI-----DNVQIIRMSAEEFTQAMNGVREFNR  278 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC-----CcEEEEECCHHHHHHHHhhcccccc
Confidence            3579999999999999888873   3899999999999999999988663     589999999753211   0      


Q ss_pred             -------CCCccEEEecCCCCchHHHH-HhcCCCCeEEEEeecCCC
Q psy14962         88 -------QAPFDAIYLSTYVPEIPYSI-LLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        88 -------~~~~D~i~~~~~~~~~~~~~-~~~L~~gG~lv~~~~~~~  125 (216)
                             ..+||+|+.++|-..+...+ ..+.++++.++++|.+..
T Consensus       279 ~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~t  324 (362)
T PRK05031        279 LKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPET  324 (362)
T ss_pred             cccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHH
Confidence                   12589999999975544333 444457888888887643

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.08  E-value=1.1e-09  Score=90.02  Aligned_cols=105  Identities=11%  Similarity=0.063  Sum_probs=78.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC----------
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH----------   87 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------   87 (216)
                      .+|||++||+|.++..+++..   .+|+++|.++++++.|++++..++.     .++.++.+|+......          
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~~~~  270 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI-----DNVQIIRMSAEEFTQAMNGVREFRRL  270 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEEcCHHHHHHHHhhccccccc
Confidence            479999999999999888874   3899999999999999999988663     5799999997532211          


Q ss_pred             ------CCCccEEEecCCCCchHH-HHHhcCCCCeEEEEeecCCCCcceE
Q psy14962         88 ------QAPFDAIYLSTYVPEIPY-SILLQLKPGGRLVCGVGKSKSYHRM  130 (216)
Q Consensus        88 ------~~~~D~i~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~~~~~~~~  130 (216)
                            ...||+|+.+.+-..+.. .+..+.+|++.++++|.+......+
T Consensus       271 ~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl  320 (353)
T TIGR02143       271 KGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANL  320 (353)
T ss_pred             cccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHH
Confidence                  123899999999554433 3344556888888888776433333

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.07  E-value=2.5e-09  Score=84.17  Aligned_cols=99  Identities=22%  Similarity=0.163  Sum_probs=74.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++..   ..++++|+++.+++.+++++..       ..++.++.+|+.
T Consensus        18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~   85 (253)
T TIGR00755        18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDAL   85 (253)
T ss_pred             HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchh
Confidence            345555553  4678899999999999999999884   3799999999999999877643       257899999987


Q ss_pred             CCCCCCCCcc---EEEecCCCCchHHHHHhcC-CCCe
Q psy14962         83 TGLLHQAPFD---AIYLSTYVPEIPYSILLQL-KPGG  115 (216)
Q Consensus        83 ~~~~~~~~~D---~i~~~~~~~~~~~~~~~~L-~~gG  115 (216)
                      .....  .+|   .|+++.+++.....+.+++ .++.
T Consensus        86 ~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~  120 (253)
T TIGR00755        86 KVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKF  120 (253)
T ss_pred             cCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence            54432  356   8889888776656666666 4443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.06  E-value=7.1e-10  Score=85.01  Aligned_cols=104  Identities=28%  Similarity=0.339  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hCCC------CCCCCCeEEEeccCCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-IRPD------LLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~~~------~~~~~~~~~~~~d~~~~~~   86 (216)
                      ..++.+||..|||.|+....++.+   +.+|+|+|+|+..++.+.+.... ....      .....++.+.++|+.....
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~  111 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP  111 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence            567789999999999999999987   56999999999999887432111 0000      0123468899999876443


Q ss_pred             CC-CCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         87 HQ-APFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~-~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                      .. ++||+|+-...+..        ..+.+.++|+|||.+++.
T Consensus       112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            33 58999997766644        347899999999995443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.06  E-value=3.2e-09  Score=79.81  Aligned_cols=102  Identities=17%  Similarity=0.108  Sum_probs=77.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC-CC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ-AP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~-~~   90 (216)
                      -++.+|||++||+|.++.+++.+..  ..|+++|.++.+++.+++++...+.    ..++.++.+|+....   ... ..
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~~~~~~D~~~~l~~~~~~~~~  121 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKS----GEQAEVVRNSALRALKFLAKKPTF  121 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----cccEEEEehhHHHHHHHhhccCCC
Confidence            3688999999999999999998832  3899999999999999999988653    246889999984321   112 24


Q ss_pred             ccEEEecCCCCc-----hHHHHH--hcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVPE-----IPYSIL--LQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~  122 (216)
                      ||+|+.++++..     ++..+.  .+|+++|.+++...
T Consensus       122 ~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       122 DNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             ceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            899999998854     223332  47888998887543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=5.9e-09  Score=85.70  Aligned_cols=108  Identities=26%  Similarity=0.294  Sum_probs=86.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~   88 (216)
                      ...+|.+|||+++++|.-|.+++..... +..|+++|.++..++..++++.+.|     ..++.++..|.....   ...
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----~~nv~~~~~d~~~~~~~~~~~  227 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-----VRNVIVVNKDARRLAELLPGG  227 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-----CCceEEEeccccccccccccc
Confidence            4689999999999999999999998754 3467999999999999999999966     477888888865322   222


Q ss_pred             CCccEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         89 APFDAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        89 ~~~D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++||.|+++.+-.                            .++....+.|||||.++.++++..
T Consensus       228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~  292 (355)
T COG0144         228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT  292 (355)
T ss_pred             CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence            3699999988831                            144677799999999999988764

>PLN02672 methionine S-methyltransferase

Probab=99.06  E-value=1.8e-09  Score=98.69  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-----------CCCCCeEEEeccCCCCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL-----------LNDGRLHLRCRDGRTGL   85 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~d~~~~~   85 (216)
                      +.+|||+|||+|.+++.+++.. +..+|+++|+|+.+++.|++++..++++.           ....++.++++|+....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            4689999999999999999885 34699999999999999999998754320           01247899999987544


Q ss_pred             CC-CCCccEEEecCCCC--------------------------------------------chHHHHHhcCCCCeEEEEe
Q psy14962         86 LH-QAPFDAIYLSTYVP--------------------------------------------EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~-~~~~D~i~~~~~~~--------------------------------------------~~~~~~~~~L~~gG~lv~~  120 (216)
                      .. ..+||+|+++.+.-                                            .+.....++|+|||.+++.
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE  277 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN  277 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            32 23699999988830                                            0124555799999999998


Q ss_pred             ecCCC
Q psy14962        121 VGKSK  125 (216)
Q Consensus       121 ~~~~~  125 (216)
                      ....+
T Consensus       278 iG~~q  282 (1082)
T PLN02672        278 MGGRP  282 (1082)
T ss_pred             ECccH
Confidence            76653

>KOG3010|consensus

Probab=99.06  E-value=2.8e-10  Score=86.24  Aligned_cols=99  Identities=17%  Similarity=0.074  Sum_probs=68.9

Q ss_pred             CCCC-eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGA-KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~-~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .++. .++|+|||+|..+..++.+..   +|+|+|++++|++.|++.......    .........++....-.+++.|+
T Consensus        31 ~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~v~L~g~e~SVDl  103 (261)
T KOG3010|consen   31 TEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEMVDLLGGEESVDL  103 (261)
T ss_pred             CCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccc----cCCccccccccccccCCCcceee
Confidence            3444 789999999988888888853   899999999999988875322110    01122222233333333678999


Q ss_pred             EEecCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPE-----IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~-----~~~~~~~~L~~gG~lv~~  120 (216)
                      |++...+|+     +.+.++++||+.|-++..
T Consensus       104 I~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  104 ITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence            999999877     458899999998844443

>KOG1499|consensus

Probab=99.04  E-value=1e-09  Score=87.60  Aligned_cols=100  Identities=22%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      ++..++.|||+|||+|.+++..|+..  ..+|+++|.|.-+ +.|.+.+..++++    +.+.++.+.++....+..+.|
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gkvEdi~LP~eKVD  129 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGKVEDIELPVEKVD  129 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecceEEEecCcccee
Confidence            45678999999999999999999984  3599999976644 8899998887753    568888888875555567899


Q ss_pred             EEEecCCCCc-----hHHHHH----hcCCCCeEEEE
Q psy14962         93 AIYLSTYVPE-----IPYSIL----LQLKPGGRLVC  119 (216)
Q Consensus        93 ~i~~~~~~~~-----~~~~~~----~~L~~gG~lv~  119 (216)
                      +|++-..-..     +++.+.    +.|+|||.++=
T Consensus       130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            9998766433     333333    79999998854

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.04  E-value=2.3e-09  Score=76.82  Aligned_cols=111  Identities=16%  Similarity=0.161  Sum_probs=86.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .+.|+..+.  ...|..|||+|.|||.++..++++.-....++++|.+++.+....+...          .++++++|+.
T Consensus        37 A~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~  104 (194)
T COG3963          37 ARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAF  104 (194)
T ss_pred             HHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----------Cccccccchh
Confidence            455566655  3578899999999999999998876555689999999999988877653          4668888876


Q ss_pred             CCC-----CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         83 TGL-----LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        83 ~~~-----~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...     ..+..||.|+|..++..        +++.+...|.+||.++.-+..+.
T Consensus       105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~  160 (194)
T COG3963         105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL  160 (194)
T ss_pred             hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence            322     33467999999988755        45788899999999998877764

>KOG2361|consensus

Probab=99.02  E-value=1e-09  Score=83.14  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=74.2

Q ss_pred             eEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCCCCCCccE
Q psy14962         19 KVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQAPFDA   93 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~   93 (216)
                      +||++|||.|...--+.+.-. ++-.++++|.||.+++..+++..-.      ..++...+.|...    .....+++|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~~~~~~~~~~~svD~  147 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTSPSLKEPPEEGSVDI  147 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccchhccCCCCcCccce
Confidence            799999999999877776532 2368999999999998887764321      2455555555542    2234578999


Q ss_pred             EEecCCCC--------chHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         94 IYLSTYVP--------EIPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        94 i~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      |++...+.        ..++++.++|||||.+++......+
T Consensus       148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D  188 (264)
T KOG2361|consen  148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD  188 (264)
T ss_pred             EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence            97765553        2568999999999999998776654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.02  E-value=3.1e-09  Score=79.63  Aligned_cols=110  Identities=20%  Similarity=0.177  Sum_probs=80.5

Q ss_pred             HHHHHhcccCCCCCe-EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCC
Q psy14962          5 RIIELLEPKIQEGAK-VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGR   82 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~-vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~   82 (216)
                      .|++.|...+.+... |||||||||..+..+++.+ |.....-.|.++..+...+......+++     |+ .-+..|+.
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~-----Nv~~P~~lDv~   86 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLP-----NVRPPLALDVS   86 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCc-----ccCCCeEeecC
Confidence            456666655666665 9999999999999999998 4567788899999987777777765542     22 23344544


Q ss_pred             CCC---C-----CCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         83 TGL---L-----HQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        83 ~~~---~-----~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                      ...   .     ..++||.|++.++++-        ++..+.++|++||.|++.
T Consensus        87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen   87 APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence            221   1     2358999999988764        457778999999999884

The function of this family is unknown.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.00  E-value=2e-10  Score=86.35  Aligned_cols=96  Identities=23%  Similarity=0.274  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCCccEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAPFDAI   94 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~i   94 (216)
                      =.++||+|||||..+..+-...   ...+|+|+|.+|+++|.++-.          --.+.++|....  ...++.||+|
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~----------YD~L~~Aea~~Fl~~~~~er~DLi  192 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGL----------YDTLYVAEAVLFLEDLTQERFDLI  192 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccc----------hHHHHHHHHHHHhhhccCCcccch
Confidence            4689999999999998887663   389999999999999987521          112333443211  1345789999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .+..++..      ++.-+...|+|||.|.+++.+..
T Consensus       193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~  229 (287)
T COG4976         193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP  229 (287)
T ss_pred             hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence            98877644      55677899999999999887665

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.00  E-value=4.5e-09  Score=79.25  Aligned_cols=100  Identities=26%  Similarity=0.294  Sum_probs=74.1

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+|.+|+|..||-|.+++.+|+.. ....|+++|++|..++..++++..+++    ..++..+.+|...... .+.+|
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i~~~~~D~~~~~~-~~~~d  171 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKV----ENRIEVINGDAREFLP-EGKFD  171 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEEEEES-GGG----TT-EE
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCC----CCeEEEEcCCHHHhcC-ccccC
Confidence            36789999999999999999999853 346899999999999999999998765    3678899999876554 67899


Q ss_pred             EEEecCCCC--chHHHHHhcCCCCeEEE
Q psy14962         93 AIYLSTYVP--EIPYSILLQLKPGGRLV  118 (216)
Q Consensus        93 ~i~~~~~~~--~~~~~~~~~L~~gG~lv  118 (216)
                      .|+++.+-.  .++..+.+++++||.+-
T Consensus       172 rvim~lp~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  172 RVIMNLPESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred             EEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence            999988853  47788999999998874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.98  E-value=9.8e-09  Score=80.44  Aligned_cols=104  Identities=13%  Similarity=-0.036  Sum_probs=79.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      +...+||-+|.|.|....+++++  +. +|+.+|+++++++.+++.+....- .+..++++++.. +.  ....++||+|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~-~~--~~~~~~fDVI  143 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ-LL--DLDIKKYDLI  143 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-hh--hccCCcCCEE
Confidence            45589999999999999999998  33 999999999999999996554221 133467777652 11  1123679999


Q ss_pred             EecCCC-CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYV-PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~-~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +++... +.+.+.+++.|+|||.++.+..++.
T Consensus       144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        144 ICLQEPDIHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             EEcCCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence            999554 4567899999999999999877764

>KOG3191|consensus

Probab=98.98  E-value=8.6e-09  Score=74.94  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      ...++|||||+|..+..+++..++...+.++|++|.+++...+.+..++      .+++.+..|....... ++.|+++.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~~-~~VDvLvf  116 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLRN-ESVDVLVF  116 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhcc-CCccEEEE
Confidence            5679999999999999999998887889999999999988888777654      4578899998766654 78999998


Q ss_pred             cCCCC---------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         97 STYVP---------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        97 ~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +.+.-                           .++.++-.+|.|.|.+++......
T Consensus       117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            87751                           133566678899999998766554

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.97  E-value=1.6e-09  Score=85.90  Aligned_cols=106  Identities=24%  Similarity=0.150  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~   91 (216)
                      ..|.+|||+.|=||.+++.++...  ..+|+.+|.|..+++.+++++..+++   ...+++++..|+....   ...++|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~---~~~~~~~~~~Dvf~~l~~~~~~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGL---DLDRHRFIQGDVFKFLKRLKKGGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred             cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHHHhcCCCC
Confidence            468999999999999999877652  23899999999999999999998774   2467899999986422   234689


Q ss_pred             cEEEecCCC------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYV------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+|++++|.            ..+...+.++|+|||.++++..++.
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            999999884            2245677899999999988777664

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1975|consensus

Probab=98.97  E-value=2.3e-09  Score=84.45  Aligned_cols=110  Identities=18%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCCCCCCeEEEeccCCC-----CC-C
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR-PDLLNDGRLHLRCRDGRT-----GL-L   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~-----~~-~   86 (216)
                      .++++.++++|||-|...+..-+..  -..++|+|+.+-.++.|++++..-- ......-.+.|+.+|...     .. .
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            4688999999999999877766552  2489999999999999999876521 100011246788888652     11 2


Q ss_pred             CCCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         87 HQAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++.+||+|-|-..+|.          ++.++.++|+|||+++.+.++..
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            2334999988777754          56889999999999999988763

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.96  E-value=9e-09  Score=76.34  Aligned_cols=106  Identities=26%  Similarity=0.369  Sum_probs=68.2

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~   88 (216)
                      ...++.+|||+|||+|..++.+++..+ ..+|+..|.++ .++..+.++..++.  ....++.+...|.....    ...
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~  117 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP  117 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence            356789999999999999999988842 45999999998 88888888877541  12366788888765422    234


Q ss_pred             CCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         89 APFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        89 ~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .+||+|+....+..      +...+.++|+++|.+++...
T Consensus       118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            68999998887643      55788899999998777543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.95  E-value=1.3e-08  Score=79.59  Aligned_cols=92  Identities=27%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .....+|+|||+|+|.++..+++.. |+.+++.+|. |+.++.+++   .        ++++++.+|+.... +.  +|+
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~~~-P~--~D~  161 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFDPL-PV--ADV  161 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTTCC-SS--ESE
T ss_pred             ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHHhhh-cc--ccc
Confidence            4566789999999999999999885 6789999997 888887777   2        78999999998333 33  999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCC--eEEEEee
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPG--GRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~g--G~lv~~~  121 (216)
                      ++....++.        +++++++.|+||  |++++..
T Consensus       162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            999999876        568999999998  9998853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.95  E-value=8.1e-10  Score=83.33  Aligned_cols=106  Identities=25%  Similarity=0.235  Sum_probs=84.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~   90 (216)
                      .+.|.+|||.|.|-|+.++..+++   ++ .|+.+|.++..++.|.-+-.+.++   ...++.++.+|.....  ..+++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l---~~~~i~iilGD~~e~V~~~~D~s  205 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSREL---FEIAIKIILGDAYEVVKDFDDES  205 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccc---cccccEEecccHHHHHhcCCccc
Confidence            456999999999999999999988   44 999999999999988766444332   2346899999975322  34678


Q ss_pred             ccEEEecCCC---------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYV---------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||+|+-+.+-         ..+.++++++|||||.++-.+.+|.
T Consensus       206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg  249 (287)
T COG2521         206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG  249 (287)
T ss_pred             cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence            9999988874         2245899999999999999888875

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=9.3e-09  Score=86.22  Aligned_cols=114  Identities=22%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+.+.+.  ..++.+|+|+-||.|.++..+|+..   .+|+|+|+++++++.|+++++.++     ..|+.|..++.
T Consensus       281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~-----i~N~~f~~~~a  350 (432)
T COG2265         281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANG-----IDNVEFIAGDA  350 (432)
T ss_pred             HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcC-----CCcEEEEeCCH
Confidence            4555666664  3567899999999999999999773   499999999999999999999977     47799999998


Q ss_pred             CCCCCC---CCCccEEEecCCCCchH---HHHHhcCCCCeEEEEeecCCC
Q psy14962         82 RTGLLH---QAPFDAIYLSTYVPEIP---YSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        82 ~~~~~~---~~~~D~i~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +.....   ...+|.|+.+.+-..+.   -.....++|..+++++|....
T Consensus       351 e~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~T  400 (432)
T COG2265         351 EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPAT  400 (432)
T ss_pred             HHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHH
Confidence            754432   35789999999975433   233345678888999987764

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.93  E-value=1.8e-09  Score=80.56  Aligned_cols=114  Identities=21%  Similarity=0.248  Sum_probs=79.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+...+....-+|.+|||+.||+|.++.+.+.+..  .+|+.+|.++..+...++++...+.    ..++.++..|....
T Consensus        31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~----~~~~~v~~~d~~~~  104 (183)
T PF03602_consen   31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGL----EDKIRVIKGDAFKF  104 (183)
T ss_dssp             HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-----GGGEEEEESSHHHH
T ss_pred             HHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCC----CcceeeeccCHHHH
Confidence            34444443213689999999999999999888842  4999999999999999999998664    23588899986532


Q ss_pred             C----CCCCCccEEEecCCCCc------hHHHHH--hcCCCCeEEEEeecCC
Q psy14962         85 L----LHQAPFDAIYLSTYVPE------IPYSIL--LQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~----~~~~~~D~i~~~~~~~~------~~~~~~--~~L~~gG~lv~~~~~~  124 (216)
                      .    ....+||+|++++|...      ++..+.  .+|+++|.+++.....
T Consensus       105 l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  105 LLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            2    13578999999999854      223444  6889999999976555

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02823 spermine synthase

Probab=98.93  E-value=1.4e-08  Score=82.53  Aligned_cols=106  Identities=23%  Similarity=0.248  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i   94 (216)
                      ...+||.+|+|.|..+.++++.. +..+++++|+++++++.|++.+..... .+..++++++.+|+..... ..++||+|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceEEEEChhHHHHhhCCCCccEE
Confidence            45789999999999999888863 235899999999999999988753210 1224789999999874332 24689999


Q ss_pred             EecCCCC------------chHH-HHHhcCCCCeEEEEeecC
Q psy14962         95 YLSTYVP------------EIPY-SILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        95 ~~~~~~~------------~~~~-~~~~~L~~gG~lv~~~~~  123 (216)
                      +++..-+            .+.+ .+.+.|+|||.+++...+
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s  222 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP  222 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence            9984321            1445 789999999999887544

>KOG0820|consensus

Probab=98.92  E-value=1.7e-08  Score=77.95  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+++++.|||+|.|||.+|..+.+.   +.+|+++|+++.|+....++....-.    ....+++.+|+.....  ..||
T Consensus        55 ~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~----~~kLqV~~gD~lK~d~--P~fd  125 (315)
T KOG0820|consen   55 DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPK----SGKLQVLHGDFLKTDL--PRFD  125 (315)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCc----cceeeEEecccccCCC--cccc
Confidence            4789999999999999999999988   56999999999999999998765321    3678999999876543  3499


Q ss_pred             EEEecCCCCc
Q psy14962         93 AIYLSTYVPE  102 (216)
Q Consensus        93 ~i~~~~~~~~  102 (216)
                      .++++.+..-
T Consensus       126 ~cVsNlPyqI  135 (315)
T KOG0820|consen  126 GCVSNLPYQI  135 (315)
T ss_pred             eeeccCCccc
Confidence            9999887644

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.92  E-value=1.5e-08  Score=83.97  Aligned_cols=100  Identities=19%  Similarity=0.140  Sum_probs=78.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +.+|||++||+|..++.++...+ ...|+++|+++.+++.+++++..+++     .++.+...|+.........||+|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL-----ENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-----CceEEEhhhHHHHHhhcCCCCEEEE
Confidence            46899999999999999988754 34899999999999999999988763     4667888887543221456999999


Q ss_pred             cCCCC--chHHHHHhcCCCCeEEEEeec
Q psy14962         97 STYVP--EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        97 ~~~~~--~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +.+-.  .++....+.+++||.++++..
T Consensus       132 DP~Gs~~~~l~~al~~~~~~gilyvSAt  159 (382)
T PRK04338        132 DPFGSPAPFLDSAIRSVKRGGLLCVTAT  159 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCEEEEEec
Confidence            86422  345666777899999999843

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.92  E-value=1.5e-08  Score=81.75  Aligned_cols=82  Identities=21%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEec-cCC---CCC-CCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCR-DGR---TGL-LHQA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~-d~~---~~~-~~~~   89 (216)
                      ++.++||||||+|.+...++... ++.+++|+|+++.+++.|++++..+ ++    ..++.+... |..   ... ...+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l----~~~I~~~~~~~~~~i~~~i~~~~~  188 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGL----NGAIRLRLQKDSKAIFKGIIHKNE  188 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCC----cCcEEEEEccchhhhhhcccccCC
Confidence            45789999999998887777654 3679999999999999999999886 44    256776542 221   111 1356


Q ss_pred             CccEEEecCCCCc
Q psy14962         90 PFDAIYLSTYVPE  102 (216)
Q Consensus        90 ~~D~i~~~~~~~~  102 (216)
                      .||+|+|+.++..
T Consensus       189 ~fDlivcNPPf~~  201 (321)
T PRK11727        189 RFDATLCNPPFHA  201 (321)
T ss_pred             ceEEEEeCCCCcC
Confidence            8999999999865

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.90  E-value=4.4e-08  Score=73.99  Aligned_cols=113  Identities=27%  Similarity=0.362  Sum_probs=81.2

Q ss_pred             HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .+.++.-+. .++.+|.+||-+|+++|....+++--+++.+.|+++|.++......-....+       .+|+--+..|+
T Consensus        59 aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~DA  131 (229)
T PF01269_consen   59 AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILEDA  131 (229)
T ss_dssp             HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-T
T ss_pred             HHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeeccC
Confidence            344444444 4678999999999999999999999999888999999999876665555444       37888899998


Q ss_pred             CCCCC---CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962         82 RTGLL---HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        82 ~~~~~---~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .....   --+..|+|+++-.-+.    +..++...||+||.++++.-
T Consensus       132 r~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK  179 (229)
T PF01269_consen  132 RHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK  179 (229)
T ss_dssp             TSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence            74321   1257999999977655    45777789999999999753

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=2.4e-08  Score=77.71  Aligned_cols=99  Identities=20%  Similarity=0.135  Sum_probs=75.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++...  +.++++|+|||+|.|.+|..+++.   +..|+++|+++.++...++....       ..++.++.+|+.
T Consensus        19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~DaL   86 (259)
T COG0030          19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGDAL   86 (259)
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCchh
Confidence            455666654  567899999999999999999998   34899999999999999888653       378999999987


Q ss_pred             CCCCCCC-CccEEEecCCCCchHHHHHhcCCC
Q psy14962         83 TGLLHQA-PFDAIYLSTYVPEIPYSILLQLKP  113 (216)
Q Consensus        83 ~~~~~~~-~~D~i~~~~~~~~~~~~~~~~L~~  113 (216)
                      ....+.- .++.|+++.+..-...-+.+++..
T Consensus        87 k~d~~~l~~~~~vVaNlPY~Isspii~kll~~  118 (259)
T COG0030          87 KFDFPSLAQPYKVVANLPYNISSPILFKLLEE  118 (259)
T ss_pred             cCcchhhcCCCEEEEcCCCcccHHHHHHHHhc
Confidence            6554321 578999998876544334443333

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.88  E-value=2.1e-08  Score=86.19  Aligned_cols=104  Identities=19%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--CCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--TGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~   93 (216)
                      .+..+||||||.|.++..+|+. .|+..++|+|+....+..+.+.....+     ..|+.++..|+.  ....+.+++|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~-----l~N~~~~~~~~~~~~~~~~~~sv~~  420 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQN-----ITNFLLFPNNLDLILNDLPNNSLDG  420 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCHHHHHHhcCcccccE
Confidence            4567999999999999999998 467899999999999998888877755     378888888764  22235678999


Q ss_pred             EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+.+.+-+|              ++..+.+.|+|||.+.+.+.+..
T Consensus       421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~  466 (506)
T PRK01544        421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN  466 (506)
T ss_pred             EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence            999888655              45789999999999999876664

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.87  E-value=2.5e-08  Score=79.04  Aligned_cols=106  Identities=25%  Similarity=0.184  Sum_probs=83.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEEe
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYL   96 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~   96 (216)
                      .+||.||.|.|..+.+++++.. -.+++.+|++++.++.+++.+.....-.. .+++.++..|+...... ..+||+|++
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            5999999999999999999853 46999999999999999998765331111 47889999998644432 237999998


Q ss_pred             cCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         97 STYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        97 ~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +..-+          .+.+.+++.|+++|+++....++.
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~  194 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPF  194 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcc
Confidence            76654          256899999999999999866553

>KOG1663|consensus

Probab=98.87  E-value=3.7e-08  Score=74.46  Aligned_cols=102  Identities=20%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~   88 (216)
                      ..++++||+|.=||+.+..+|..+.++++|+++|+++..++.+.+..+..+.    ...++++++++.+..      ...
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv----~~KI~~i~g~a~esLd~l~~~~~~  147 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV----DHKITFIEGPALESLDELLADGES  147 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc----cceeeeeecchhhhHHHHHhcCCC
Confidence            4578999999999999999999998889999999999999999888887765    378999999875332      134


Q ss_pred             CCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         89 APFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        89 ~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      ++||.+|.+.-=..   ..+++.+++|+||.+++.
T Consensus       148 ~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  148 GTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             CceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence            78999999876433   558899999999999984

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.87  E-value=8.4e-09  Score=82.23  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=72.4

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  +.++..++|++||.|..+..+++.+++.+.|+|+|.++.+++.|++++..       ..++.+++.|+
T Consensus         7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f   77 (296)
T PRK00050          7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNF   77 (296)
T ss_pred             cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCH
Confidence            5677788876  47888999999999999999999976567999999999999999988754       26899999997


Q ss_pred             CCCC--CCC--CCccEEEecCCC
Q psy14962         82 RTGL--LHQ--APFDAIYLSTYV  100 (216)
Q Consensus        82 ~~~~--~~~--~~~D~i~~~~~~  100 (216)
                      ....  ...  .++|.|+.+.+.
T Consensus        78 ~~l~~~l~~~~~~vDgIl~DLGv  100 (296)
T PRK00050         78 SNLKEVLAEGLGKVDGILLDLGV  100 (296)
T ss_pred             HHHHHHHHcCCCccCEEEECCCc
Confidence            6321  111  279999987775

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.85  E-value=5.5e-08  Score=71.92  Aligned_cols=113  Identities=27%  Similarity=0.311  Sum_probs=83.9

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +-..+.+.--+|.++||+.+|+|.++.+.+.+..  ..++.+|.+...+...++++...+.    ..+..++..|+....
T Consensus        33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~----~~~~~~~~~da~~~L  106 (187)
T COG0742          33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGL----EGEARVLRNDALRAL  106 (187)
T ss_pred             HHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCC----ccceEEEeecHHHHH
Confidence            3344443124689999999999999999998843  4999999999999999999887553    367888888876321


Q ss_pred             ---CCCCCccEEEecCCCCc-hH----H--H--HHhcCCCCeEEEEeecCC
Q psy14962         86 ---LHQAPFDAIYLSTYVPE-IP----Y--S--ILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~-~~----~--~--~~~~L~~gG~lv~~~~~~  124 (216)
                         ...++||+|+.++|+.. +.    .  .  -..+|+|+|.+++.....
T Consensus       107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence               12235999999999974 21    1  1  236899999999965544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.83  E-value=1.8e-08  Score=73.78  Aligned_cols=78  Identities=17%  Similarity=0.049  Sum_probs=61.1

Q ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEE
Q psy14962         45 FGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLV  118 (216)
Q Consensus        45 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv  118 (216)
                      +|+|+|++|++.|+++......  ....+++++.+|+...+..+++||+|++...+++      .+++++++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence            4899999999999877543110  0124689999999877666789999999888765      4689999999999999


Q ss_pred             EeecCC
Q psy14962        119 CGVGKS  124 (216)
Q Consensus       119 ~~~~~~  124 (216)
                      +.....
T Consensus        79 i~d~~~   84 (160)
T PLN02232         79 ILDFNK   84 (160)
T ss_pred             EEECCC
Confidence            876654

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=3.8e-08  Score=79.56  Aligned_cols=106  Identities=23%  Similarity=0.182  Sum_probs=89.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|.+|+|.-||-|++++.+|++..+  +|+++|++|.+++..++++..++.+    ..+..+++|........+.+|.
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~~~~~aDr  259 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAPELGVADR  259 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhhccccCCE
Confidence            457999999999999999999998543  5999999999999999999987752    4588999998766554478999


Q ss_pred             EEecCCC--CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYV--PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+.+.+-  +.++....+.+++||.+.+....+.
T Consensus       260 Iim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e  293 (341)
T COG2520         260 IIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE  293 (341)
T ss_pred             EEeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence            9999886  5577888999999999988766554

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.82  E-value=1.2e-07  Score=74.27  Aligned_cols=145  Identities=14%  Similarity=0.059  Sum_probs=101.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CC-CCCc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LH-QAPF   91 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-~~~~   91 (216)
                      ..-+|+||.||.|.+........+. ..+|...|.++..++.+++..++.|++    +-++|.++|+.+..  .. .-..
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P  210 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAP  210 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCC
Confidence            4468999999999998888777542 148888999999999999999998862    44499999987432  11 2346


Q ss_pred             cEEEecCCCCc---------hHHHHHhcCCCCeEEEEee--cCCCCcceEEEEEecCCCceeeeeeeeeeeceecccccc
Q psy14962         92 DAIYLSTYVPE---------IPYSILLQLKPGGRLVCGV--GKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINAD  160 (216)
Q Consensus        92 D~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++++..++-         .+.-+.+.+.|||+++.+-  +||+. +   .+                   ..-+++. 
T Consensus       211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-e---~I-------------------Ar~LtsH-  266 (311)
T PF12147_consen  211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-E---MI-------------------ARVLTSH-  266 (311)
T ss_pred             CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-H---HH-------------------HHHHhcc-
Confidence            88988877643         3466778999999999976  55541 0   00                   0001111 


Q ss_pred             ccccchhhhhcccccCcceEEEeeccccccccccccCCCCc
Q psy14962        161 EQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQND  201 (216)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agf~~~  201 (216)
                                   ..+...+-..+|-.|+.....+|||+-.
T Consensus       267 -------------r~g~~WvMRrRsq~EmD~Lv~~aGF~K~  294 (311)
T PF12147_consen  267 -------------RDGKAWVMRRRSQAEMDQLVEAAGFEKI  294 (311)
T ss_pred             -------------cCCCceEEEecCHHHHHHHHHHcCCchh
Confidence                         1122344567889999999999999843

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.81  E-value=3.3e-08  Score=76.17  Aligned_cols=95  Identities=25%  Similarity=0.289  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeE-EEeccCC-----CCCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH-LRCRDGR-----TGLLHQ   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~d~~-----~~~~~~   88 (216)
                      .++.+|||+|||||.++..+++. + ..+|+++|+++.++....   ..       ..++. +...++.     .....-
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l---~~-------~~~v~~~~~~ni~~~~~~~~~~d~  141 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKL---RQ-------DERVKVLERTNIRYVTPADIFPDF  141 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHH---hc-------CCCeeEeecCCcccCCHhHcCCCc
Confidence            36789999999999999999987 2 348999999998876521   11       01221 1222222     111122


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ..+|+++++...  ++..+.+.|++ |.+++..-++
T Consensus       142 ~~~DvsfiS~~~--~l~~i~~~l~~-~~~~~L~KPq  174 (228)
T TIGR00478       142 ATFDVSFISLIS--ILPELDLLLNP-NDLTLLFKPQ  174 (228)
T ss_pred             eeeeEEEeehHh--HHHHHHHHhCc-CeEEEEcChH
Confidence            357777665444  67899999999 8877765444

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.81  E-value=9e-08  Score=71.39  Aligned_cols=103  Identities=26%  Similarity=0.279  Sum_probs=81.1

Q ss_pred             CCCCC-eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGA-KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~-~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      +.... +++|+|+|.|.-++.++=.. |..+++.+|....-+.+.+......++     .|+.+++..++. ......||
T Consensus        45 ~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~-~~~~~~fd  117 (184)
T PF02527_consen   45 LPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL-----SNVEVINGRAEE-PEYRESFD  117 (184)
T ss_dssp             S-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT------SSEEEEES-HHH-TTTTT-EE
T ss_pred             hccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC-----CCEEEEEeeecc-cccCCCcc
Confidence            44444 89999999999999888765 577999999999999999888888664     789999999876 33457899


Q ss_pred             EEEecCCCC--chHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVP--EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~--~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++.+..+  .+.+-+...+++||.+++.-..
T Consensus       118 ~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~  150 (184)
T PF02527_consen  118 VVTARAVAPLDKLLELARPLLKPGGRLLAYKGP  150 (184)
T ss_dssp             EEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred             EEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            999987764  4667888999999999986543

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.80  E-value=1.8e-07  Score=65.66  Aligned_cols=95  Identities=18%  Similarity=0.078  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccE
Q psy14962         16 EGAKVLDIGSGSGF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~   93 (216)
                      .+.+|+|+|||+|. .+..+++.   +..|+++|+++..++.+++.            .++++..|....... -..+|+
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~l   80 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKL   80 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCE
Confidence            45789999999996 77777755   46999999999988877654            367889998754332 256899


Q ss_pred             EEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962         94 IYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  125 (216)
                      |++..+-+.+...+.++-+. |.-+++.....+
T Consensus        81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            99999988877666665555 666777655443

>KOG3420|consensus

Probab=98.79  E-value=1.4e-08  Score=71.16  Aligned_cols=78  Identities=23%  Similarity=0.232  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      +|.+++|+|||.|-+....+.. + ...|+|+|++|++++.+++++....      -+++++++|........+.||.++
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~-~-~e~vlGfDIdpeALEIf~rNaeEfE------vqidlLqcdildle~~~g~fDtav  119 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMP-K-NESVLGFDIDPEALEIFTRNAEEFE------VQIDLLQCDILDLELKGGIFDTAV  119 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcC-C-CceEEeeecCHHHHHHHhhchHHhh------hhhheeeeeccchhccCCeEeeEE
Confidence            6889999999999998655543 2 3489999999999999999988754      457899999887777778999999


Q ss_pred             ecCCCC
Q psy14962         96 LSTYVP  101 (216)
Q Consensus        96 ~~~~~~  101 (216)
                      .+.++.
T Consensus       120 iNppFG  125 (185)
T KOG3420|consen  120 INPPFG  125 (185)
T ss_pred             ecCCCC
Confidence            999973

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.78  E-value=2.9e-08  Score=77.67  Aligned_cols=109  Identities=28%  Similarity=0.261  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCC-Ccc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQA-PFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-~~D   92 (216)
                      ....+||-||.|.|..+..+.+.. +..+++++|+++..++.+++.+...... +...+++++..|+..... ..+ +||
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCccc
Confidence            357899999999999999998873 2358999999999999999976642210 224689999999863322 123 799


Q ss_pred             EEEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+++..-+          .+.+.+++.|+|||.+++...++.
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~  195 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF  195 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence            999876642          255899999999999999875554

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.78  E-value=3.1e-08  Score=83.65  Aligned_cols=97  Identities=24%  Similarity=0.213  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +..|+|+|||+|.+....++..   +...+|+++|.++.+....++++..++.    .++|+++.+|++.... ..++|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V~vi~~d~r~v~l-pekvDI  261 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKVTVIHGDMREVEL-PEKVDI  261 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTEEEEES-TTTSCH-SS-EEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeEEEEeCcccCCCC-CCceeE
Confidence            4679999999999987766542   2235999999999888777776566543    4789999999985544 348999


Q ss_pred             EEecCC----C----CchHHHHHhcCCCCeEEE
Q psy14962         94 IYLSTY----V----PEIPYSILLQLKPGGRLV  118 (216)
Q Consensus        94 i~~~~~----~----~~~~~~~~~~L~~gG~lv  118 (216)
                      |++-..    .    +..+....+.|||||+++
T Consensus       262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            997332    1    224456668999998775

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.75  E-value=3.3e-08  Score=78.90  Aligned_cols=106  Identities=25%  Similarity=0.304  Sum_probs=85.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~   91 (216)
                      ..+|..|||+++++|.-+..++......+.+++.|+++..+...++++.+.|     ..++.+...|.....  .....|
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-----~~~v~~~~~D~~~~~~~~~~~~f  157 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-----VFNVIVINADARKLDPKKPESKF  157 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------SSEEEEESHHHHHHHHHHTTTE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----CceEEEEeecccccccccccccc
Confidence            5789999999999999999999998766799999999999999999999865     478888877765331  123469


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhcC----CCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVP----------------------------EIPYSILLQL----KPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~----------------------------~~~~~~~~~L----~~gG~lv~~~~~~  124 (216)
                      |.|+++.+-.                            .+++...+.+    ||||+++.++.+.
T Consensus       158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            9999988731                            1346777899    9999999998765

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.74  E-value=4.4e-08  Score=73.31  Aligned_cols=94  Identities=20%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+. ..+++..|.|+|||.+.++..+.    ....|+..|+..                    .+-.++.+|+..
T Consensus        61 d~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva--------------------~n~~Vtacdia~  115 (219)
T PF05148_consen   61 DVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA--------------------PNPRVTACDIAN  115 (219)
T ss_dssp             HHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS---------------------SSTTEEES-TTS
T ss_pred             HHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC--------------------CCCCEEEecCcc
Confidence            45677776 34556789999999999875443    234799999743                    234578899988


Q ss_pred             CCCCCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEeec
Q psy14962         84 GLLHQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .+.++++.|+++.+..+     ..++.+..|+|||||.+.+...
T Consensus       116 vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV  159 (219)
T PF05148_consen  116 VPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEV  159 (219)
T ss_dssp             -S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEe
Confidence            88888999999887665     3467899999999999988643

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1500|consensus

Probab=98.72  E-value=9.1e-08  Score=76.08  Aligned_cols=98  Identities=24%  Similarity=0.253  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+..|||+|||+|.++...+...  ..+|+++|. .+|.+.|++..+.+++    .+++.++.+..++... .++.|+||
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEA-S~MAqyA~~Lv~~N~~----~~rItVI~GKiEdieL-PEk~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEA-SEMAQYARKLVASNNL----ADRITVIPGKIEDIEL-PEKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC--cceEEEEeh-hHHHHHHHHHHhcCCc----cceEEEccCccccccC-chhccEEE
Confidence            57789999999999999888874  349999995 5699999998888654    5889999998875544 34689998


Q ss_pred             ecCCC-----CchH---HHHHhcCCCCeEEEEee
Q psy14962         96 LSTYV-----PEIP---YSILLQLKPGGRLVCGV  121 (216)
Q Consensus        96 ~~~~~-----~~~~---~~~~~~L~~gG~lv~~~  121 (216)
                      +-..-     +.++   -..++.|+|.|.++=+.
T Consensus       249 SEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  249 SEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             eccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence            75542     1222   34569999999886543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.70  E-value=2.6e-07  Score=74.29  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET--VMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~   91 (216)
                      +...+||-+|.|.|....++.+.-+ -.+++-+|.+|+|++.++++  +++.+--++..++++++..|+..... ..+.|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            4456899999999999999998832 35999999999999999943  44433223456789999999764332 23589


Q ss_pred             cEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         92 DAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        92 D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      |.||.+.+-+.           +...+++.|+++|.++++..++..
T Consensus       367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~  412 (508)
T COG4262         367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF  412 (508)
T ss_pred             cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence            99999888654           236778999999999999888763

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.69  E-value=6.8e-08  Score=79.49  Aligned_cols=113  Identities=23%  Similarity=0.250  Sum_probs=70.3

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  ..++ +|||+.||.|.++..+|+..   .+|+|+|.++++++.|++++..++     ..|+.|+.+++
T Consensus       185 l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~-----i~n~~f~~~~~  253 (352)
T PF05958_consen  185 LYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNG-----IDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--S
T ss_pred             HHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcC-----CCcceEEEeec
Confidence            4555566554  2334 89999999999999999874   499999999999999999999877     47899998765


Q ss_pred             CCCC----------------CCCCCccEEEecCCCCchHHHHHhc-CCCCeEEEEeecCCC
Q psy14962         82 RTGL----------------LHQAPFDAIYLSTYVPEIPYSILLQ-LKPGGRLVCGVGKSK  125 (216)
Q Consensus        82 ~~~~----------------~~~~~~D~i~~~~~~~~~~~~~~~~-L~~gG~lv~~~~~~~  125 (216)
                      ....                .....+|+|+.++|-..+...+.+. .++.-+++++|.+..
T Consensus       254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~t  314 (352)
T PF05958_consen  254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPAT  314 (352)
T ss_dssp             HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHH
T ss_pred             cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHH
Confidence            3211                1123589999999865433222211 134556666665543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.64  E-value=5.7e-08  Score=73.29  Aligned_cols=98  Identities=20%  Similarity=0.129  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      -.+.||+|||-|..|..++...-  -+|..+|+.+..++.|++.+....     ..-.++.+...+...+..++||+|++
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~f~P~~~~YDlIW~  128 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQDFTPEEGKYDLIWI  128 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----TT-EEEEEE
T ss_pred             cceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhhccCCCCcEeEEEe
Confidence            46799999999999987754432  389999999999999997654311     12346777766655555678999999


Q ss_pred             cCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         97 STYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        97 ~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+.+        +++++.+.|+|+|.+++-.
T Consensus       129 QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            888765        5688999999999999954

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.64  E-value=1.9e-07  Score=75.68  Aligned_cols=117  Identities=22%  Similarity=0.221  Sum_probs=76.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEE
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELV------GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL   76 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (216)
                      +..|++++.  ..++.+|+|.+||+|.+...+.+.+      ....+++|+|+++.++..|+-++.-.+.   ...+..+
T Consensus        35 ~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---~~~~~~i  109 (311)
T PF02384_consen   35 VDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI---DNSNINI  109 (311)
T ss_dssp             HHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH---HCBGCEE
T ss_pred             HHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc---ccccccc
Confidence            344555553  4677899999999999998887753      1356999999999999988877654331   1233457


Q ss_pred             EeccCCCCCCC--CCCccEEEecCCCCc---------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         77 RCRDGRTGLLH--QAPFDAIYLSTYVPE---------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        77 ~~~d~~~~~~~--~~~~D~i~~~~~~~~---------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...|.......  ...||+|++++|+..                           ++..+.+.|++||++.+.++..
T Consensus       110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            88886543322  468999999988621                           2367779999999987776653

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.63  E-value=5.2e-08  Score=70.83  Aligned_cols=77  Identities=25%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CC-CccEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QA-PFDAI   94 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~D~i   94 (216)
                      ..|+|+.||.|..++.+|+.+   .+|+++|+++..++.|+.++.--|.    .+++.++++|+......  .. .+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv----~~~I~~i~gD~~~~~~~~~~~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGV----ADNIDFICGDFFELLKRLKSNKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEEEEES-HHHHGGGB------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCCHHHHHhhccccccccEE
Confidence            369999999999999999984   3899999999999999999988653    36899999998643321  12 28999


Q ss_pred             EecCCCC
Q psy14962         95 YLSTYVP  101 (216)
Q Consensus        95 ~~~~~~~  101 (216)
                      ++++|+.
T Consensus        74 FlSPPWG   80 (163)
T PF09445_consen   74 FLSPPWG   80 (163)
T ss_dssp             EE---BS
T ss_pred             EECCCCC
Confidence            9999873

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.62  E-value=2.9e-07  Score=76.06  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=79.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEEe
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYL   96 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~   96 (216)
                      .+|||+.||+|..++.++...+....|+++|+++..++.+++++..++.     .++.+++.|+...... ...||+|..
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            5899999999999999998742224899999999999999999987653     4688999987643321 356999999


Q ss_pred             cCCCC--chHHHHHhcCCCCeEEEEee
Q psy14962         97 STYVP--EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        97 ~~~~~--~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +..-.  .++..+.+.+++||.+.++.
T Consensus       121 DPfGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       121 DPFGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence            87322  46788889999999999985

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.61  E-value=3.5e-07  Score=72.79  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCch----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHH-H------------HhCCC---------
Q psy14962         17 GAKVLDIGSGSGF----MSCVFAELVGK---TGRVFGVEHMREQCEDAWETV-M------------RIRPD---------   67 (216)
Q Consensus        17 ~~~vldiG~G~G~----~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~-~------------~~~~~---------   67 (216)
                      .-+|+..||+||.    +++.+.+..+.   ..+|+|+|+|+.+++.|++.. .            .....         
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3689999999995    33333333221   358999999999999998741 0            00000         


Q ss_pred             ----CCCCCCeEEEeccCCCCC-CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         68 ----LLNDGRLHLRCRDGRTGL-LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        68 ----~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                          +.-...+.|...|..... ...+.||+|+|.+.+.+        ++..+.+.|+|||+|++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                001145677777776532 23578999999877643        568889999999998774

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=7.3e-07  Score=66.15  Aligned_cols=113  Identities=26%  Similarity=0.364  Sum_probs=87.5

Q ss_pred             hHHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc
Q psy14962          2 QQARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD   80 (216)
Q Consensus         2 ~~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (216)
                      +.+.++.-+. .++.+|++||-+|+.+|....+++--.+ .+.++++|.++.+....-..+.+       ..|+--+.+|
T Consensus        61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~D  132 (231)
T COG1889          61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILED  132 (231)
T ss_pred             HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeecc
Confidence            4556666665 4678999999999999999999998876 67999999999987776666555       3678888999


Q ss_pred             CCCCCC---CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962         81 GRTGLL---HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        81 ~~~~~~---~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +.....   --+..|+|+.+-.-+.    +..++...|++||.++++.-
T Consensus       133 A~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK  181 (231)
T COG1889         133 ARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK  181 (231)
T ss_pred             cCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence            864331   1156899999877655    44788899999998888643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.59  E-value=3e-07  Score=69.35  Aligned_cols=105  Identities=18%  Similarity=0.185  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCCCchH----HHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH-------------HHhCC-CCC----
Q psy14962         16 EGAKVLDIGSGSGFM----SCVFAELVG---K-TGRVFGVEHMREQCEDAWETV-------------MRIRP-DLL----   69 (216)
Q Consensus        16 ~~~~vldiG~G~G~~----~~~l~~~~~---~-~~~v~~~D~~~~~~~~a~~~~-------------~~~~~-~~~----   69 (216)
                      ..-+|+..||++|.-    ++.+.....   + ..+++|+|+|+.+++.|++..             .+... ...    
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            346899999999963    333333111   1 359999999999999998521             00000 000    


Q ss_pred             -----CCCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         70 -----NDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        70 -----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                           -..++.|...|........+.||+|+|.+++-.        +++.+++.|+|||+|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 014688888888763445678999999999743        568889999999999994

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.59  E-value=1.1e-06  Score=71.70  Aligned_cols=107  Identities=13%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhC---C----------------------------Cc-------EEEEEeCCHHHHH
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVG---K----------------------------TG-------RVFGVEHMREQCE   55 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~---~----------------------------~~-------~v~~~D~~~~~~~   55 (216)
                      -.++..++|--||+|.+.++.|....   |                            .+       .++|+|+++.+++
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            46778999999999999999887642   1                            01       3779999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------------hHHHHHhcCCCCeEEEEee
Q psy14962         56 DAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        56 ~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~  121 (216)
                      .|+.++...|+    .+-+.|..+|+.......+.+|+||++.|...              +...+++.++.-+..+++.
T Consensus       269 ~Ak~NA~~AGv----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         269 GAKANARAAGV----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHHhcCC----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            99999999886    47799999998755444368999999999732              2256667888878888865


Q ss_pred             cCC
Q psy14962        122 GKS  124 (216)
Q Consensus       122 ~~~  124 (216)
                      ...
T Consensus       345 ~e~  347 (381)
T COG0116         345 SED  347 (381)
T ss_pred             cHH
Confidence            544

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.58  E-value=1.4e-06  Score=68.59  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             CCeEEEEcCCCch----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH-----hCCC--------CCC-----
Q psy14962         17 GAKVLDIGSGSGF----MSCVFAELVG----KTGRVFGVEHMREQCEDAWETVMR-----IRPD--------LLN-----   70 (216)
Q Consensus        17 ~~~vldiG~G~G~----~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~-----~~~~--------~~~-----   70 (216)
                      .-+|+-+||+||.    +++.+.+..+    ...+|+|+|+|...++.|+...-.     .+++        ...     
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999995    4444455543    246999999999999999853211     1100        000     


Q ss_pred             ------CCCeEEEeccCCCCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         71 ------DGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        71 ------~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                            ...|.|...|........+.||+|+|-+++-.        +++.++..|+|||+|++-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                  12466666676544434567999999999733        668889999999999984

>KOG2187|consensus

Probab=98.55  E-value=2.6e-07  Score=77.36  Aligned_cols=111  Identities=15%  Similarity=0.104  Sum_probs=80.2

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+-+.+.  +..+..++|++||||.++..+++..   .+|+|+|+++..+..|++++..+|     +.|++|+++-+++.
T Consensus       374 ~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ng-----isNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  374 TIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQING-----ISNATFIVGQAEDL  443 (534)
T ss_pred             HHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcC-----ccceeeeecchhhc
Confidence            3444444  5677889999999999999999885   389999999999999999999987     58999999955532


Q ss_pred             CC---CC--CCcc-EEEecCCCC---c-hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         85 LL---HQ--APFD-AIYLSTYVP---E-IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        85 ~~---~~--~~~D-~i~~~~~~~---~-~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ..   ..  ++=+ +++++.+-.   . ++..+++.-++--.++++|....
T Consensus       444 ~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  444 FPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             cchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence            21   11  2335 556665542   2 44566666557777777776553

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.55  E-value=8.7e-07  Score=67.35  Aligned_cols=98  Identities=19%  Similarity=0.154  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +.+++|||+|.|.-++.+|-. .|+.+++-+|.....+.+.+......++     .|+.++++.++........||+|.+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccccccCcEEEe
Confidence            589999999999999998843 4667899999999999999888888654     7899999998755432211999998


Q ss_pred             cCCC--CchHHHHHhcCCCCeEEEEe
Q psy14962         97 STYV--PEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        97 ~~~~--~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .+..  ..+.+-+...+++||.++..
T Consensus       142 RAva~L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         142 RAVASLNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             ehccchHHHHHHHHHhcccCCcchhh
Confidence            7664  44667788999999988653

>KOG1122|consensus

Probab=98.55  E-value=9.6e-07  Score=72.27  Aligned_cols=106  Identities=22%  Similarity=0.270  Sum_probs=85.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~   91 (216)
                      .++|.+|||.++.+|.-+.++|..+...+.|++.|.+...+.....++.+.|     ..+..+...|....+..  .++|
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-----v~ntiv~n~D~~ef~~~~~~~~f  313 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-----VTNTIVSNYDGREFPEKEFPGSF  313 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-----CCceEEEccCcccccccccCccc
Confidence            5789999999999999999998888777899999999999999999999866     47778888887643211  2379


Q ss_pred             cEEEecCCCCc----------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPE----------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |.|..+++-..                            ++.+....+++||++|.++++-
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            99998777311                            3356668999999999988765

>KOG3987|consensus

Probab=98.51  E-value=1.1e-08  Score=75.93  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ...++||+|+|.|.++..++..+.   +|++.|.|..|....+++            +.+++...  +....+-+||+|.
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk------------~ynVl~~~--ew~~t~~k~dli~  174 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK------------NYNVLTEI--EWLQTDVKLDLIL  174 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc------------CCceeeeh--hhhhcCceeehHH
Confidence            346899999999999999998863   799999999998766543            22222211  1222344699998


Q ss_pred             ecCCCCc------hHHHHHhcCCC-CeEEEEeecCCC
Q psy14962         96 LSTYVPE------IPYSILLQLKP-GGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~~~------~~~~~~~~L~~-gG~lv~~~~~~~  125 (216)
                      |-..+..      +++.++.+|+| .|++++...-|.
T Consensus       175 clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~  211 (288)
T KOG3987|consen  175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY  211 (288)
T ss_pred             HHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            8766532      67899999999 899888755443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.48  E-value=3.9e-06  Score=75.15  Aligned_cols=107  Identities=17%  Similarity=0.097  Sum_probs=78.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhC---C--------------------------------------CcEEEEEeCCHHH
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVG---K--------------------------------------TGRVFGVEHMREQ   53 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~---~--------------------------------------~~~v~~~D~~~~~   53 (216)
                      .++..++|.+||+|.+.++.+....   |                                      ..+++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            4678999999999999998876311   1                                      1269999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEEEecCCCCc----------hHH---HHHhcCCCCeEEE
Q psy14962         54 CEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAIYLSTYVPE----------IPY---SILLQLKPGGRLV  118 (216)
Q Consensus        54 ~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~~~~----------~~~---~~~~~L~~gG~lv  118 (216)
                      +..|++++...|+    .+.+.+..+|+......  .+++|+|++++|+..          +..   ...+...+|+.++
T Consensus       269 v~~A~~N~~~~g~----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~  344 (702)
T PRK11783        269 IQAARKNARRAGV----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA  344 (702)
T ss_pred             HHHHHHHHHHcCC----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            9999999998775    25688999998654322  257999999999732          112   2233445898888


Q ss_pred             EeecCCC
Q psy14962        119 CGVGKSK  125 (216)
Q Consensus       119 ~~~~~~~  125 (216)
                      +.+.+..
T Consensus       345 llt~~~~  351 (702)
T PRK11783        345 LFSSSPE  351 (702)
T ss_pred             EEeCCHH
Confidence            8776653

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.48  E-value=1.4e-06  Score=68.98  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      ++..+++.+.  +.++..|+|+|+|+|.+|..+++..   .+++++|.++.+.+..++.+..       ..++.++.+|+
T Consensus        18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~-------~~~~~vi~~D~   85 (262)
T PF00398_consen   18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS-------NPNVEVINGDF   85 (262)
T ss_dssp             HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT-------CSSEEEEES-T
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh-------cccceeeecch
Confidence            3566777775  4588999999999999999999884   5999999999999988887653       37899999998


Q ss_pred             CCCCCCC---CCccEEEecCCCCc
Q psy14962         82 RTGLLHQ---APFDAIYLSTYVPE  102 (216)
Q Consensus        82 ~~~~~~~---~~~D~i~~~~~~~~  102 (216)
                      .......   .....|+++.+...
T Consensus        86 l~~~~~~~~~~~~~~vv~NlPy~i  109 (262)
T PF00398_consen   86 LKWDLYDLLKNQPLLVVGNLPYNI  109 (262)
T ss_dssp             TTSCGGGHCSSSEEEEEEEETGTG
T ss_pred             hccccHHhhcCCceEEEEEecccc
Confidence            7543322   34567888877643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.47  E-value=1e-06  Score=66.93  Aligned_cols=99  Identities=22%  Similarity=0.249  Sum_probs=66.0

Q ss_pred             EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCC
Q psy14962         20 VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTY   99 (216)
Q Consensus        20 vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~   99 (216)
                      |+||||..|++.+.+++.. ...+++++|+++..++.|++++...++    .+++.++.+|......+.+..|.|+...+
T Consensus         1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCCCCCEEEEecC
Confidence            6899999999999999883 334899999999999999999999876    47899999998765544444677776555


Q ss_pred             CCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962        100 VPE----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus       100 ~~~----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      -..    ++......++....|+++..+
T Consensus        76 GG~lI~~ILe~~~~~~~~~~~lILqP~~  103 (205)
T PF04816_consen   76 GGELIIEILEAGPEKLSSAKRLILQPNT  103 (205)
T ss_dssp             -HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred             CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence            332    334444455555566665433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG3045|consensus

Probab=98.46  E-value=8.9e-07  Score=68.13  Aligned_cols=92  Identities=17%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.. ......|.|+|||-+.++.   ..   ...|+.+|+.+                    .+-+++.+|+.
T Consensus       168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------------~~~~V~~cDm~  220 (325)
T KOG3045|consen  168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------------VNERVIACDMR  220 (325)
T ss_pred             HHHHHHHHHh-CcCceEEEecccchhhhhh---cc---ccceeeeeeec--------------------CCCceeecccc
Confidence            3456777762 3445678999999988765   11   23899999632                    35678999998


Q ss_pred             CCCCCCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEee
Q psy14962         83 TGLLHQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+..+++.|+++.+..+     ..++.++.++|++||.+++..
T Consensus       221 ~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  221 NVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             CCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence            888888999999876654     346789999999999999864

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.45  E-value=2.9e-06  Score=73.71  Aligned_cols=80  Identities=9%  Similarity=0.000  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC----
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGK-------TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG----   84 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~-------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----   84 (216)
                      ...+|+|.|||+|.+...+++....       ...++++|+++..+..++.++...+     ...+.+...|....    
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-----~~~~~i~~~d~l~~~~~~  105 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-----LLEINVINFNSLSYVLLN  105 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-----CCCceeeecccccccccc
Confidence            3458999999999999988876521       2478999999999999998876643     12344555553311    


Q ss_pred             -CCCCCCccEEEecCCC
Q psy14962         85 -LLHQAPFDAIYLSTYV  100 (216)
Q Consensus        85 -~~~~~~~D~i~~~~~~  100 (216)
                       ....+.||+|+.++|+
T Consensus       106 ~~~~~~~fD~IIgNPPy  122 (524)
T TIGR02987       106 IESYLDLFDIVITNPPY  122 (524)
T ss_pred             cccccCcccEEEeCCCc
Confidence             1112579999999886

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=1.4e-06  Score=65.52  Aligned_cols=97  Identities=24%  Similarity=0.240  Sum_probs=73.4

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL------   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------   86 (216)
                      .+.++..|+|+|+.+|.++..+++..+++..|+++|+.|--                ...++.++.+|+.....      
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~~iq~d~~~~~~~~~l~~  105 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVIFLQGDITDEDTLEKLLE  105 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCceEEeeeccCccHHHHHHH
Confidence            35789999999999999999999998877789999987632                13568899999864331      


Q ss_pred             --CCCCccEEEecCCC--------Cc---------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         87 --HQAPFDAIYLSTYV--------PE---------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        87 --~~~~~D~i~~~~~~--------~~---------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                        ...++|+|++++.-        .+         .+.-...+|+|||.+++-+....
T Consensus       106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence              22457999988764        11         22455579999999999776654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.41  E-value=2.6e-06  Score=67.25  Aligned_cols=100  Identities=26%  Similarity=0.308  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         18 AKVLDIGSGSGFMS-CVFAELVGKTGRVFGVEHMREQCEDAWETVM-RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        18 ~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+|+=||||+=-+| +.+++..+++..|+++|.+++..+.+++.+. ..++    ..++.++.+|.......-..||+|+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----~~~m~f~~~d~~~~~~dl~~~DvV~  197 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----SKRMSFITADVLDVTYDLKEYDVVF  197 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG----SEEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----cCCeEEEecchhccccccccCCEEE
Confidence            59999999995555 5566655556789999999999999998776 2222    3678999999764433346799999


Q ss_pred             ecCCCC-------chHHHHHhcCCCCeEEEEee
Q psy14962         96 LSTYVP-------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        96 ~~~~~~-------~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......       .++.++.+.++||+.+++-.
T Consensus       198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             EhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            877764       37899999999999998853

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.40  E-value=3.2e-06  Score=64.18  Aligned_cols=111  Identities=23%  Similarity=0.313  Sum_probs=64.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HhCCCCCCCCCeE
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM-------RIRPDLLNDGRLH   75 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~~~~~~~   75 (216)
                      +..+++.+.  +.+++.++|+|||.|.....++...+ -.+++|+|+.+.....|+....       ..+   ....++.
T Consensus        31 ~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~  104 (205)
T PF08123_consen   31 VSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVE  104 (205)
T ss_dssp             HHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEE
T ss_pred             HHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccce
Confidence            345566554  67899999999999999988887654 2369999999998877765332       222   2245678


Q ss_pred             EEeccCCCCCCC---CCCccEEEecCCC-C-c---hHHHHHhcCCCCeEEEE
Q psy14962         76 LRCRDGRTGLLH---QAPFDAIYLSTYV-P-E---IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        76 ~~~~d~~~~~~~---~~~~D~i~~~~~~-~-~---~~~~~~~~L~~gG~lv~  119 (216)
                      +..+|+......   -...|+|+++... . .   .+......||+|.++|.
T Consensus       105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence            888887643210   1346999998664 2 2   23455577888888764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.36  E-value=7.3e-07  Score=74.74  Aligned_cols=94  Identities=17%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~---D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+||+|||+|.++..+..+   +..+..+   |..+..+++|.++.-          ...+-..-....+...+.||+|.
T Consensus       120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleRGv----------pa~~~~~~s~rLPfp~~~fDmvH  186 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALERGV----------PAMIGVLGSQRLPFPSNAFDMVH  186 (506)
T ss_pred             EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhcCc----------chhhhhhccccccCCccchhhhh
Confidence            5799999999999999887   2222222   555566777665421          11111111234455678999999


Q ss_pred             ecCCCCc-------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LSTYVPE-------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |....-.       ++-++-|+|+|||+++.+-+.-.
T Consensus       187 csrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  187 CSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             cccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            8776522       45678899999999999876543

; GO: 0008168 methyltransferase activity

>KOG2940|consensus

Probab=98.34  E-value=7.2e-07  Score=67.51  Aligned_cols=102  Identities=13%  Similarity=0.062  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .-..++|||||-|++...+....  -.+++.+|.|-.|++.++.. ..++      -......+|-+.....++++|+|+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~-qdp~------i~~~~~v~DEE~Ldf~ens~DLii  142 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA-QDPS------IETSYFVGDEEFLDFKENSVDLII  142 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc-CCCc------eEEEEEecchhcccccccchhhhh
Confidence            44689999999999999887662  24899999999999887653 2211      234566777666667789999999


Q ss_pred             ecCCCCc------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         96 LSTYVPE------IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ++..++|      .+.+++..|||+|.|+.+.....+
T Consensus       143 sSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT  179 (325)
T KOG2940|consen  143 SSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT  179 (325)
T ss_pred             hhhhhhhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence            9998876      457888999999999987666543

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.34  E-value=6.1e-06  Score=62.26  Aligned_cols=108  Identities=20%  Similarity=0.222  Sum_probs=80.3

Q ss_pred             HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC
Q psy14962          8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH   87 (216)
Q Consensus         8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (216)
                      ..++..++.+.+++|+||-.+++.+.+.+. ++...+++.|+++..++.|.+++.+.++    ..++++..+|.......
T Consensus         8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~   82 (226)
T COG2384           8 TTVANLVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLEL   82 (226)
T ss_pred             HHHHHHHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCc
Confidence            334445667888999999999999999987 4556899999999999999999999876    47899999998766666


Q ss_pred             CCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~  120 (216)
                      ++.+|+|+..++-..    ++++-.+.|+.=-+++++
T Consensus        83 ~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          83 EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence            667899877665432    334444444433345554

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.30  E-value=1.2e-06  Score=64.33  Aligned_cols=93  Identities=20%  Similarity=0.205  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      .+.+.|+|+|+|.++...++.   .-+|++++.+|.....|.+++.-.|     ..|+.++.+|+.....  ...|+|+|
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g-----~~n~evv~gDA~~y~f--e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPG-----DVNWEVVVGDARDYDF--ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCC-----CcceEEEecccccccc--cccceeHH
Confidence            478999999999999988887   2399999999999999999875544     4789999999875544  34788887


Q ss_pred             cCCCCc--------hHHHHHhcCCCCeEEEE
Q psy14962         97 STYVPE--------IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        97 ~~~~~~--------~~~~~~~~L~~gG~lv~  119 (216)
                      -..-..        .+..+.+.||.++.++=
T Consensus       103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            544321        44777788899988764

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.30  E-value=1.4e-05  Score=64.69  Aligned_cols=109  Identities=13%  Similarity=0.210  Sum_probs=74.0

Q ss_pred             hcccCCCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCCCeEE--EeccCCC
Q psy14962         10 LEPKIQEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVM-RIRPDLLNDGRLHL--RCRDGRT   83 (216)
Q Consensus        10 l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~~--~~~d~~~   83 (216)
                      ++..+.++..++|+|||+|.-+..++..+..   ...++++|+|.++++.+.+.+. ...      +.+.+  +++|...
T Consensus        70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gdy~~  143 (319)
T TIGR03439        70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGTYDD  143 (319)
T ss_pred             HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEecHHH
Confidence            3334667889999999999988877766532   3579999999999999999887 321      33444  7777643


Q ss_pred             C---CCC---CCCccEEEe-cCCCCc--------hHHHHHh-cCCCCeEEEEeecCC
Q psy14962         84 G---LLH---QAPFDAIYL-STYVPE--------IPYSILL-QLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~---~~~---~~~~D~i~~-~~~~~~--------~~~~~~~-~L~~gG~lv~~~~~~  124 (216)
                      .   ...   .....+++. ...+.+        +++.+++ .|+||+.|++.....
T Consensus       144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~  200 (319)
T TIGR03439       144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC  200 (319)
T ss_pred             HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence            2   111   123455543 334433        5678888 999999999865433

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.28  E-value=1.7e-05  Score=62.64  Aligned_cols=90  Identities=22%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  ..++...+|.--|.|..+..++..+++.++++++|.++.+++.|++.+...+      +++.+++..+
T Consensus        11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F   82 (314)
T COG0275          11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNF   82 (314)
T ss_pred             HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcH
Confidence            4567777776  5788899999999999999999998766789999999999999999887643      6888888875


Q ss_pred             CCCC-----CCCCCccEEEecCC
Q psy14962         82 RTGL-----LHQAPFDAIYLSTY   99 (216)
Q Consensus        82 ~~~~-----~~~~~~D~i~~~~~   99 (216)
                      ....     ...+++|.|+.+.+
T Consensus        83 ~~l~~~l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          83 ANLAEALKELGIGKVDGILLDLG  105 (314)
T ss_pred             HHHHHHHHhcCCCceeEEEEecc
Confidence            4211     11256788865544

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.25  E-value=1e-05  Score=64.87  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=71.1

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |...+++.+.  ..++..++|.-+|.|..+..+++.+++ ++|+|+|.++.+++.+++++...      ..++.+++++.
T Consensus         8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF   78 (305)
T TIGR00006         8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNF   78 (305)
T ss_pred             hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCH
Confidence            5667778775  568889999999999999999998754 79999999999999999987653      25788988887


Q ss_pred             CCCC-----CCCCCccEEEecCCC
Q psy14962         82 RTGL-----LHQAPFDAIYLSTYV  100 (216)
Q Consensus        82 ~~~~-----~~~~~~D~i~~~~~~  100 (216)
                      ....     ....++|.|+.+.+.
T Consensus        79 ~~l~~~l~~~~~~~vDgIl~DLGv  102 (305)
T TIGR00006        79 ANFFEHLDELLVTKIDGILVDLGV  102 (305)
T ss_pred             HHHHHHHHhcCCCcccEEEEeccC
Confidence            5321     122468999877764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.21  E-value=2.9e-06  Score=66.37  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCCchHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC-------------CCCCC----------
Q psy14962         15 QEGAKVLDIGSGSGFMSCVF-AELVGKTGRVFGVEHMREQCEDAWETVMRIR-------------PDLLN----------   70 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l-~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------------~~~~~----------   70 (216)
                      ..|.++||+|||+-.+...- ++.+   .+++..|..+..++..++.+.+.+             +|...          
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            45778999999996553322 2332   279999999999887776654322             00000          


Q ss_pred             CCCe-EEEeccCCCCCC-C-----CCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEee
Q psy14962         71 DGRL-HLRCRDGRTGLL-H-----QAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        71 ~~~~-~~~~~d~~~~~~-~-----~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+ .++..|+....+ .     ..+||+|++...++.          .++++.++|||||.|++..
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            0113 377788764332 1     125999998877643          4588899999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=98.20  E-value=1e-05  Score=62.58  Aligned_cols=92  Identities=22%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             HHHHhcccCCCCC--eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CCC---CCCeEEEec
Q psy14962          6 IIELLEPKIQEGA--KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD-LLN---DGRLHLRCR   79 (216)
Q Consensus         6 ~~~~l~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~~   79 (216)
                      +++.+.  +++|.  +|||+.+|+|..+..++..   ++.|+++|.++......++.+.....+ ...   ..+++++.+
T Consensus        78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            445554  56776  8999999999999999987   558999999999988888877763110 011   146888888


Q ss_pred             cCCCCCC-CCCCccEEEecCCCCc
Q psy14962         80 DGRTGLL-HQAPFDAIYLSTYVPE  102 (216)
Q Consensus        80 d~~~~~~-~~~~~D~i~~~~~~~~  102 (216)
                      |...... ....||+|+.+.++++
T Consensus       153 da~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        153 SSLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             cHHHHHhhCCCCCcEEEECCCCCC
Confidence            8753332 1246999999999876

>KOG1596|consensus

Probab=98.18  E-value=1e-05  Score=61.79  Aligned_cols=107  Identities=23%  Similarity=0.337  Sum_probs=79.8

Q ss_pred             ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CC
Q psy14962         12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQ   88 (216)
Q Consensus        12 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~   88 (216)
                      .+++||.+||-+|+++|....++.--++|..-||++|.++..-......+.+       ..|+.-+..|+.....   .-
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArhP~KYRmlV  224 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARHPAKYRMLV  224 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCCchheeeee
Confidence            3689999999999999999999999999999999999888643332222222       2677788888764321   11


Q ss_pred             CCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         89 APFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        89 ~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +-.|+||++-+-+.    +.-+....||+||-+++++-...
T Consensus       225 gmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikanc  265 (317)
T KOG1596|consen  225 GMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANC  265 (317)
T ss_pred             eeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEeccc
Confidence            46899999877655    23466789999999999876553

>KOG4589|consensus

Probab=98.14  E-value=1e-05  Score=59.46  Aligned_cols=97  Identities=23%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------   85 (216)
                      .+.|+++|||+||.+|.++....++.+|.+.|.|+|+-+-.                .+..+.++.+ |+.+..      
T Consensus        66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------------p~~Ga~~i~~~dvtdp~~~~ki~  129 (232)
T KOG4589|consen   66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------------PPEGATIIQGNDVTDPETYRKIF  129 (232)
T ss_pred             ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------------CCCCcccccccccCCHHHHHHHH
Confidence            35789999999999999999999999898999999964321                0223444444 443211      


Q ss_pred             --CCCCCccEEEecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 --LHQAPFDAIYLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                        .+....|+|++++.-..                 .+.-....++|+|.+++-.+...
T Consensus       130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence              23467899988766311                 11223367889999999877664

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.13  E-value=1.4e-05  Score=64.63  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.+|.++||+||++|.++..+++.   +.+|+++|..+ +-   . .+..       .+++.....|.....+..+.+|.
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~---~-~L~~-------~~~V~h~~~d~fr~~p~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MA---Q-SLMD-------TGQVEHLRADGFKFRPPRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cC---H-hhhC-------CCCEEEEeccCcccCCCCCCCCE
Confidence            468999999999999999999988   45999999544 21   1 1222       36788888887654433568999


Q ss_pred             EEecCCCCc--hHHHHHhcCCCC
Q psy14962         94 IYLSTYVPE--IPYSILLQLKPG  114 (216)
Q Consensus        94 i~~~~~~~~--~~~~~~~~L~~g  114 (216)
                      ++|+....-  +...+.+.|..|
T Consensus       274 vVcDmve~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        274 LVCDMVEKPARVAELMAQWLVNG  296 (357)
T ss_pred             EEEecccCHHHHHHHHHHHHhcC
Confidence            999988643  446666666655

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.13  E-value=4.3e-05  Score=60.97  Aligned_cols=85  Identities=21%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCC----CCC-CCCC
Q psy14962         17 GAKVLDIGSGSGF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGR----TGL-LHQA   89 (216)
Q Consensus        17 ~~~vldiG~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~----~~~-~~~~   89 (216)
                      .-++||||+|.-. +.+..++..  +.+++|+|+++..++.|++++..+ ++    ..+|.++...-.    ... ...+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L----~~~I~l~~~~~~~~i~~~i~~~~e  176 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNL----ESRIELRKQKNPDNIFDGIIQPNE  176 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEEE--ST-SSTTTSTT--S
T ss_pred             ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcccc----ccceEEEEcCCccccchhhhcccc
Confidence            4579999999954 455555554  689999999999999999999987 55    367888765422    111 1236


Q ss_pred             CccEEEecCCCCchHHHH
Q psy14962         90 PFDAIYLSTYVPEIPYSI  107 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~  107 (216)
                      .||+.+|+.++....+++
T Consensus       177 ~~dftmCNPPFy~s~~e~  194 (299)
T PF05971_consen  177 RFDFTMCNPPFYSSQEEA  194 (299)
T ss_dssp             -EEEEEE-----SS----
T ss_pred             eeeEEecCCccccChhhh
Confidence            899999999997755443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.12  E-value=9.1e-07  Score=66.07  Aligned_cols=92  Identities=29%  Similarity=0.280  Sum_probs=59.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--------CCC--
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--------GLL--   86 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~--   86 (216)
                      +.+|||+||++|.++..++++.++...|+|+|+.+..         .       ..++..+.+|...        ...  
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-------~~~~~~i~~d~~~~~~~~~i~~~~~~   87 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-------LQNVSFIQGDITNPENIKDIRKLLPE   87 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S--------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-------ccceeeeecccchhhHHHhhhhhccc
Confidence            4899999999999999999986445799999988761         0       1344555555421        111  


Q ss_pred             CCCCccEEEecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         87 HQAPFDAIYLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....+|+|+++.....                 .+..+.+.|+|||.+++-....
T Consensus        88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen   88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            1258999999984311                 1234457899999999977664

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.11  E-value=6.9e-05  Score=53.62  Aligned_cols=79  Identities=24%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+...|+|+|||.|+++..++..+   .++.+|+++|.++...+.+.++....+.  ....+..+...+...... ....
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~  100 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS--DLEKRLSFIQGDIADESS-SDPP  100 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc--hhhccchhhccchhhhcc-cCCC
Confidence            567899999999999999999833   2456999999999999999888776441  011344555544332211 3345


Q ss_pred             cEEEe
Q psy14962         92 DAIYL   96 (216)
Q Consensus        92 D~i~~   96 (216)
                      ++++.
T Consensus       101 ~~~vg  105 (141)
T PF13679_consen  101 DILVG  105 (141)
T ss_pred             eEEEE
Confidence            66654

>KOG2198|consensus

Probab=98.09  E-value=3.4e-05  Score=62.56  Aligned_cols=115  Identities=23%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKT---GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ++.-+...++||.+|||.|+.+|.-+..+.+.+...   +.|++-|.++..+...........     ..+..+...|..
T Consensus       145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-----~~~~~v~~~~~~  219 (375)
T KOG2198|consen  145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-----SPNLLVTNHDAS  219 (375)
T ss_pred             ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-----Ccceeeecccce
Confidence            343444568999999999999999998888776422   378999999998877776664321     234444444432


Q ss_pred             CCC---------CCCCCccEEEecCCCCc-----------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGL---------LHQAPFDAIYLSTYVPE-----------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~---------~~~~~~D~i~~~~~~~~-----------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...         .....||-|+++.+-..                             ++.+-.+.||+||.+|.++.+.
T Consensus       220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            111         12346999998776310                             2356668999999999998776


Q ss_pred             C
Q psy14962        125 K  125 (216)
Q Consensus       125 ~  125 (216)
                      .
T Consensus       300 n  300 (375)
T KOG2198|consen  300 N  300 (375)
T ss_pred             C
Confidence            4

>KOG1331|consensus

Probab=98.08  E-value=4.8e-06  Score=65.12  Aligned_cols=96  Identities=21%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      ....+..++|+|||.|..+.     ..|...++|+|.+...+..+++.           +...+..+|+...+..+.+||
T Consensus        42 ~~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-----------~~~~~~~ad~l~~p~~~~s~d  105 (293)
T KOG1331|consen   42 SQPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-----------GGDNVCRADALKLPFREESFD  105 (293)
T ss_pred             ccCCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-----------CCceeehhhhhcCCCCCCccc
Confidence            34568899999999997743     23556899999999888777642           122678889888887788999


Q ss_pred             EEEecCCCCch---------HHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVPEI---------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~~~---------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+++...++++         ++++.++++|||...+.++..
T Consensus       106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            99999998874         478889999999988877654

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.04  E-value=2.6e-05  Score=55.71  Aligned_cols=58  Identities=26%  Similarity=0.192  Sum_probs=47.4

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +++|+|||.|..+..+++.. +..+++++|+++.+.+.+++++..++.     .++.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~-----~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL-----PNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC-----CcEEEEEeeee
Confidence            48999999999999998874 456899999999999999999887542     45777776643

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.04  E-value=2.3e-05  Score=58.05  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ...|++|||+|+|+|..++..++..  ...|++.|+++...+..+-+.+.++      .++.+...|...   +...||+
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~g---~~~~~Dl  145 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANG------VSILFTHADLIG---SPPAFDL  145 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhcc------ceeEEeeccccC---CCcceeE
Confidence            3468999999999999999988874  3489999999988888887877765      567888888654   3557999


Q ss_pred             EEecCCCCc------hHHHHHhcCCC-CeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKP-GGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~-gG~lv~~~~~~  124 (216)
                      ++.+..+..      ++. ....++. |..+++-.++.
T Consensus       146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             EEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            998877633      223 4444444 54555444444

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.01  E-value=5.5e-05  Score=61.37  Aligned_cols=97  Identities=24%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CCCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~   90 (216)
                      .+.||++|+-+|+|- |.++..+|+..+  ++|+++|.+++-++.|++..+.           .++... ......-.+.
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~  229 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEI  229 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhh
Confidence            468999999999974 788899999864  6999999999999988876332           233322 1111111124


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|+|+...+ ...+....+.|++||++++.=..
T Consensus       230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence            999999999 88889999999999999987544

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.00  E-value=0.00014  Score=51.93  Aligned_cols=99  Identities=28%  Similarity=0.318  Sum_probs=67.0

Q ss_pred             EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCCC--CCCCC-CCccEEE
Q psy14962         20 VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGRT--GLLHQ-APFDAIY   95 (216)
Q Consensus        20 vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~~D~i~   95 (216)
                      ++|+|||+|... .++........++++|.++.++..+...... .     ... +.+...|...  ..... ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-----GLGLVDFVVADALGGVLPFEDSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----CCCceEEEEeccccCCCCCCCCCceeEEe
Confidence            999999999977 3444322113789999999999885544322 1     111 5777777654  23333 4799994


Q ss_pred             ecCCC-----CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LSTYV-----PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .....     ......+.+.++|+|.+++......
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            44433     3466889999999999999877654

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.96  E-value=7.8e-05  Score=59.40  Aligned_cols=48  Identities=25%  Similarity=0.152  Sum_probs=38.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      ...+|||+|||+|..+..+....+.-.+++++|.|+.|++.++..+..
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~   80 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA   80 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence            346899999999988777766665345899999999999999887654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3178|consensus

Probab=97.96  E-value=6.8e-05  Score=60.48  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=71.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      ...+|+|.|.|..+..+..++ |  ++-+++.+...+..+...+. .        .+..+.+|+....++   -|+|++-
T Consensus       179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~~P~---~daI~mk  243 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQDTPK---GDAIWMK  243 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-C--------CcceecccccccCCC---cCeEEEE
Confidence            678999999999999888864 4  78899998888777666543 2        377888898766433   3699988


Q ss_pred             CCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         98 TYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        98 ~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+++        +++++++.|+|+|.+++...
T Consensus       244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             eecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            88765        56899999999999998755

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.95  E-value=1.6e-06  Score=58.86  Aligned_cols=95  Identities=24%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             EEEcCCCchHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCccEEEe
Q psy14962         21 LDIGSGSGFMSCVFAELVGKTG--RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFDAIYL   96 (216)
Q Consensus        21 ldiG~G~G~~~~~l~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~   96 (216)
                      ||+|+..|..+..+++...+..  +++++|..+. .+.+.+.+++.++    ..+++++.++......  ..+++|+++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~----~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL----SDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC----CCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            6899999999999887765443  7999999995 2223333333222    3579999998753221  1368999999


Q ss_pred             cCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962         97 STYVPE-----IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        97 ~~~~~~-----~~~~~~~~L~~gG~lv~~  120 (216)
                      +.....     .+..+...|+|||.+++.
T Consensus        76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            987422     447788899999999874

>KOG1269|consensus

Probab=97.92  E-value=3.9e-05  Score=63.13  Aligned_cols=106  Identities=24%  Similarity=0.249  Sum_probs=83.0

Q ss_pred             cccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962         11 EPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP   90 (216)
Q Consensus        11 ~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (216)
                      .....++..++|+|||-|......+...  ...++|+|.++..+..+.......++    ..+..+...|....+.+++.
T Consensus       105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l----~~k~~~~~~~~~~~~fedn~  178 (364)
T KOG1269|consen  105 RESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL----DNKCNFVVADFGKMPFEDNT  178 (364)
T ss_pred             hhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh----hhhcceehhhhhcCCCCccc
Confidence            3356788899999999999998888774  45899999999988888776655442    13345677888777778889


Q ss_pred             ccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ||.+.+.....+      ...++.++++|||.++....
T Consensus       179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence            999987766544      55899999999999998653

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=0.00014  Score=55.66  Aligned_cols=99  Identities=27%  Similarity=0.213  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCC--CCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLL--HQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~--~~~~~   91 (216)
                      .+|..+||+|+.||.++..+++..+  ..|+++|..-..+..--+   .       ..++.... .++.....  -.+..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR---~-------d~rV~~~E~tN~r~l~~~~~~~~~  145 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLR---N-------DPRVIVLERTNVRYLTPEDFTEKP  145 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHh---c-------CCcEEEEecCChhhCCHHHcccCC
Confidence            4688999999999999999988843  499999998876543222   1       23443332 33321111  12367


Q ss_pred             cEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++++..+..   ++..+..++++++.++..+-+++
T Consensus       146 d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQF  182 (245)
T COG1189         146 DLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQF  182 (245)
T ss_pred             CeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchh
Confidence            89998888755   56888999999999998776664

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.90  E-value=0.00016  Score=59.76  Aligned_cols=100  Identities=24%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC---CCCCCCC
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR---TGLLHQA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~~   89 (216)
                      .++.+|+-+|||+ |.++..+++..+ ...|+++|.++..++.|++....        ..+..... +..   .......
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCC
Confidence            4555999999999 999988888875 35899999999999999885322        11111111 100   0111123


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .+|+++...+....+..+.+.++|||.+++.-..
T Consensus       238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence            6999999999888889999999999999876443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.89  E-value=0.00018  Score=56.73  Aligned_cols=99  Identities=24%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---hC--------------------------C-
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR---IR--------------------------P-   66 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---~~--------------------------~-   66 (216)
                      ..+||--|||.|.++..+|..   +..+.|.|.|--|+-..+-.+..   .+                          . 
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            468999999999999999998   56999999999987544432221   00                          0 


Q ss_pred             -----CCCCCCCeEEEeccCCCCCCCC---CCccEEEecCCCC------chHHHHHhcCCCCeEEE
Q psy14962         67 -----DLLNDGRLHLRCRDGRTGLLHQ---APFDAIYLSTYVP------EIPYSILLQLKPGGRLV  118 (216)
Q Consensus        67 -----~~~~~~~~~~~~~d~~~~~~~~---~~~D~i~~~~~~~------~~~~~~~~~L~~gG~lv  118 (216)
                           ......+.....+|+.......   ++||+|+...-+.      ..++.+.++|||||+.+
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence                 0112345677777776544433   7899998764432      24588999999999544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.83  E-value=0.0014  Score=50.60  Aligned_cols=102  Identities=18%  Similarity=0.129  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~   93 (216)
                      .|++||-+|=+- ..++.++.. +...+|+.+|+++..++..++.+.+.|+      +++....|+....++.  ++||+
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~~~~fD~  115 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEELRGKFDV  115 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BSE
T ss_pred             cCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHHhcCCCE
Confidence            688999998443 223333332 3346999999999999999999988773      4999999998776654  89999


Q ss_pred             EEecCCCCc-----hHHHHHhcCCCCe-EEEEeecCCC
Q psy14962         94 IYLSTYVPE-----IPYSILLQLKPGG-RLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~-----~~~~~~~~L~~gG-~lv~~~~~~~  125 (216)
                      ++.+++..-     ++.+....||..| ..++...+..
T Consensus       116 f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~  153 (243)
T PF01861_consen  116 FFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE  153 (243)
T ss_dssp             EEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence            999999743     4566667777755 6566555543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1709|consensus

Probab=97.81  E-value=0.00023  Score=53.64  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      .+|.+||++|-|-|.....+.++ .| ..-+.+|.+|..++..+.....      ...|+.++.+-.++..  .+++.||
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FD  171 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFD  171 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCcc
Confidence            57899999999999998887776 33 3667789999998877765432      2367777776655332  2356799


Q ss_pred             EEEecCCCC------chHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTYVP------EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~~~------~~~~~~~~~L~~gG~lv~~  120 (216)
                      .|+-+.-.+      ++...+.++|||+|.+-+.
T Consensus       172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            999876533      2447888999999998653

>KOG0024|consensus

Probab=97.80  E-value=0.00012  Score=58.43  Aligned_cols=102  Identities=17%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCC---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGR---T   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~---~   83 (216)
                      .+++|.+||-+|+|+ |..+...|+.++ ..+|+.+|+++..++.|++.-..         .+.....     +..   .
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~~Ga~---------~~~~~~~~~~~~~~~~~v~  235 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKKFGAT---------VTDPSSHKSSPQELAELVE  235 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHHhCCe---------EEeeccccccHHHHHHHHH
Confidence            467899999999999 999999999986 35999999999999999983221         1111111     100   1


Q ss_pred             CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .......+|+.|.....+...+.....+++||.+++.-...
T Consensus       236 ~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~  276 (354)
T KOG0024|consen  236 KALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGA  276 (354)
T ss_pred             hhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCC
Confidence            11122459999999999998899999999999977754433

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.71  E-value=0.00035  Score=54.13  Aligned_cols=91  Identities=16%  Similarity=0.106  Sum_probs=62.0

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+.+.+...+.+..+|+|||||.--++...... .++..++|+|++..+++.....+...+      .+.++...|...
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~------~~~~~~v~Dl~~  165 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG------VPHDARVRDLLS  165 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTT
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC------CCcceeEeeeec
Confidence            3445555555667889999999998887665543 345799999999999999998877754      467788888765


Q ss_pred             CCCCCCCccEEEecCCCCc
Q psy14962         84 GLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~  102 (216)
                      ..+ ....|+.+.--.++-
T Consensus       166 ~~~-~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  166 DPP-KEPADLALLLKTLPC  183 (251)
T ss_dssp             SHT-TSEESEEEEET-HHH
T ss_pred             cCC-CCCcchhhHHHHHHH
Confidence            533 456899998766654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=0.00025  Score=52.63  Aligned_cols=39  Identities=28%  Similarity=0.632  Sum_probs=33.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCH
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMR   51 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (216)
                      .+++|.+|+|+=.|.|+++..++..+++.+.|++.-..+
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e   83 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE   83 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence            468999999999999999999999999888898874433

>KOG2730|consensus

Probab=97.59  E-value=7.2e-05  Score=56.47  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPF   91 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~   91 (216)
                      ....|+|..||-|.-++.++..   +..|+++|++|.-+..|+++++--|.    ++++.|+++|+.+...    ....+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI----~~rItFI~GD~ld~~~~lq~~K~~~  166 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGV----PDRITFICGDFLDLASKLKADKIKY  166 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecC----CceeEEEechHHHHHHHHhhhhhee
Confidence            4468999999999999888887   34899999999999999999887775    4799999999864321    22346


Q ss_pred             cEEEecCCC
Q psy14962         92 DAIYLSTYV  100 (216)
Q Consensus        92 D~i~~~~~~  100 (216)
                      |.|+...+.
T Consensus       167 ~~vf~sppw  175 (263)
T KOG2730|consen  167 DCVFLSPPW  175 (263)
T ss_pred             eeeecCCCC
Confidence            788877775

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.55  E-value=0.00033  Score=57.52  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCCCCCCCc
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~   91 (216)
                      ..++++|+-.|||. |..+..+++..+. ..|+++|.+++.++.+++.-.         +.+ .....+........+.+
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~lGa---------~~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLAREMGA---------DKLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHcCC---------cEEecCCcccHHHHhccCCCC
Confidence            34789999999987 8888888888642 268999999998887765311         111 10011111111112358


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|+...+.........+.|++||+++..-
T Consensus       237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence            999988776667788889999999998753

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.54  E-value=0.00017  Score=57.90  Aligned_cols=90  Identities=23%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  ..++..++|.-.|.|..+..+++..++ ++++|+|.++.+++.|++++...      .+++.++..++
T Consensus         8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~------~~r~~~~~~~F   78 (310)
T PF01795_consen    8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF------DDRFIFIHGNF   78 (310)
T ss_dssp             THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC------CTTEEEEES-G
T ss_pred             cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc------cceEEEEeccH
Confidence            6677888886  578889999999999999999998765 79999999999999998876542      36888998886


Q ss_pred             CCCC-----C-CCCCccEEEecCCC
Q psy14962         82 RTGL-----L-HQAPFDAIYLSTYV  100 (216)
Q Consensus        82 ~~~~-----~-~~~~~D~i~~~~~~  100 (216)
                      ....     . ....+|.|+.+.+.
T Consensus        79 ~~l~~~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   79 SNLDEYLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             GGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHHHHHHccCCCccCEEEEcccc
Confidence            4211     1 23579999887774

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3115|consensus

Probab=97.51  E-value=0.00049  Score=51.42  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--CCCCCeEEEeccCCCCCC---CCCCcc
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL--LNDGRLHLRCRDGRTGLL---HQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~---~~~~~D   92 (216)
                      -.+.|||||-|.+.+.++..+ |+..++|+|+--..-+..+++....+..+  -.-.|+.+...+.....+   ..++.+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            458999999999999999986 57799999998888888888766533110  112455666655543221   123322


Q ss_pred             EEEecCCCCc--------------hHHHHHhcCCCCeEEEEeec
Q psy14962         93 AIYLSTYVPE--------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        93 ~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      -.+...+-++              ++....-+|++||.++..+.
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD  184 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD  184 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence            2332222222              34566678999999988643

>KOG2671|consensus

Probab=97.48  E-value=0.0003  Score=56.64  Aligned_cols=82  Identities=17%  Similarity=0.101  Sum_probs=61.2

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHH-------HHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCED-------AWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      .+.+|+.|.|--.|||.+....++.   ++.|+|.|++-.++..       .+.++++-+.+   ..-+.++.+|....+
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~---~~fldvl~~D~sn~~  278 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS---SQFLDVLTADFSNPP  278 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc---chhhheeeecccCcc
Confidence            3689999999999999998888877   5699999999888762       33455554421   233567888876444


Q ss_pred             -CCCCCccEEEecCCC
Q psy14962         86 -LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~  100 (216)
                       .....||.|+|+.+.
T Consensus       279 ~rsn~~fDaIvcDPPY  294 (421)
T KOG2671|consen  279 LRSNLKFDAIVCDPPY  294 (421)
T ss_pred             hhhcceeeEEEeCCCc
Confidence             345689999999984

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.46  E-value=0.0002  Score=54.16  Aligned_cols=84  Identities=20%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCCccEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAPFDAI   94 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~i   94 (216)
                      .++|||||=+.........    -..|+.||+++.                    ...+...|+...+.   +.+.||+|
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~--------------------~~~I~qqDFm~rplp~~~~e~FdvI  108 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ--------------------HPGILQQDFMERPLPKNESEKFDVI  108 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCC--------------------CCCceeeccccCCCCCCcccceeEE
Confidence            5899999986554333222    237999998762                    23456677664433   35789999


Q ss_pred             EecCCCCc---------hHHHHHhcCCCCeE-----EEEeecCCC
Q psy14962         95 YLSTYVPE---------IPYSILLQLKPGGR-----LVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~---------~~~~~~~~L~~gG~-----lv~~~~~~~  125 (216)
                      .++.++..         ++..+.+.|+|+|.     ++++.+.+.
T Consensus       109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen  109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence            99888744         56888999999999     888877774

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.45  E-value=0.00044  Score=48.97  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=53.3

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCccEEEecCCC-C----c----------hHH
Q psy14962         43 RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPFDAIYLSTYV-P----E----------IPY  105 (216)
Q Consensus        43 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~i~~~~~~-~----~----------~~~  105 (216)
                      +|+++|+.+++++..++++.+.++    ..++.++..+=+.  ...+.+++|+++-+.+. +    .          .++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL----EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC----CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            589999999999999999998764    3578888765332  12223579999877664 1    1          347


Q ss_pred             HHHhcCCCCeEEEEeecCC
Q psy14962        106 SILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus       106 ~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+.+.|+|||.+++.+...
T Consensus        77 ~al~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--S
T ss_pred             HHHHhhccCCEEEEEEeCC
Confidence            8889999999998877543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.43  E-value=0.00069  Score=52.24  Aligned_cols=92  Identities=25%  Similarity=0.314  Sum_probs=50.5

Q ss_pred             HHHHhcccCCCC--CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCC----CCCeEEEec
Q psy14962          6 IIELLEPKIQEG--AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLN----DGRLHLRCR   79 (216)
Q Consensus         6 ~~~~l~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~   79 (216)
                      +++.+.  ++++  .+|||.-+|-|..+..++..   +++|+++|.||-.....+..+.....+...    ..+++++.+
T Consensus        65 l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~  139 (234)
T PF04445_consen   65 LAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG  139 (234)
T ss_dssp             HHHHTT---BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred             HHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence            344443  4454  48999999999999998864   459999999998765555433321100000    147899999


Q ss_pred             cCCCCCC-CCCCccEEEecCCCCc
Q psy14962         80 DGRTGLL-HQAPFDAIYLSTYVPE  102 (216)
Q Consensus        80 d~~~~~~-~~~~~D~i~~~~~~~~  102 (216)
                      |...... ...+||+|+.+.++++
T Consensus       140 d~~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  140 DALEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             -CCCHCCCHSS--SEEEE--S---
T ss_pred             CHHHHHhhcCCCCCEEEECCCCCC
Confidence            9875433 3578999999999865

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.42  E-value=0.0027  Score=54.81  Aligned_cols=94  Identities=23%  Similarity=0.239  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----------
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----------   83 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----------   83 (216)
                      .++.+|+-+|||. |..++..++..|  +.|+++|.+++.++.+++.-            .++...+...          
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslG------------A~~v~i~~~e~~~~~~gya~  228 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMG------------AEFLELDFEEEGGSGDGYAK  228 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC------------CeEEEeccccccccccchhh
Confidence            4789999999999 889999999875  48999999999998887631            1211111100          


Q ss_pred             ----C-------C-CC-CCCccEEEecCCCCc-----h-HHHHHhcCCCCeEEEEeec
Q psy14962         84 ----G-------L-LH-QAPFDAIYLSTYVPE-----I-PYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        84 ----~-------~-~~-~~~~D~i~~~~~~~~-----~-~~~~~~~L~~gG~lv~~~~  122 (216)
                          .       . .. ...+|+|+.....+.     + .+++.+.+||||.++..-.
T Consensus       229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                0       0 00 135899999887633     4 4899999999999877644

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.40  E-value=0.003  Score=54.49  Aligned_cols=117  Identities=24%  Similarity=0.290  Sum_probs=83.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR   79 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   79 (216)
                      +..|++.+.+  .+..+|+|-.||+|.+.....+.++.   ...++|.|.++..+..|+-++--++.+    .++....+
T Consensus       175 ~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~----~~~~i~~~  248 (489)
T COG0286         175 SELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE----GDANIRHG  248 (489)
T ss_pred             HHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC----cccccccc
Confidence            3445555542  57779999999999998888777642   257999999999999999988776641    13456666


Q ss_pred             cCCCCCC-----CCCCccEEEecCCCC---------c----------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         80 DGRTGLL-----HQAPFDAIYLSTYVP---------E----------------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        80 d~~~~~~-----~~~~~D~i~~~~~~~---------~----------------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |....+.     ..+.||.|+++.++.         .                      ++.++...|+|||+.-+..++
T Consensus       249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            6543332     226799999988862         0                      236778999999887777766


Q ss_pred             CC
Q psy14962        124 SK  125 (216)
Q Consensus       124 ~~  125 (216)
                      ..
T Consensus       329 gv  330 (489)
T COG0286         329 GV  330 (489)
T ss_pred             Cc
Confidence            63

>PRK11524 putative methyltransferase; Provisional

Probab=97.31  E-value=0.00098  Score=53.44  Aligned_cols=56  Identities=23%  Similarity=0.118  Sum_probs=45.2

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      |+.+++....   .+|+.|||..||+|..+.+..+.   +-+.+|+|++++..+.|++++..
T Consensus       197 L~erlI~~~S---~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        197 LLKRIILASS---NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHhC---CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            3445555543   78999999999999998876665   45999999999999999999754

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.28  E-value=0.0033  Score=49.43  Aligned_cols=103  Identities=23%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             CeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CC----CC
Q psy14962         18 AKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LH----QA   89 (216)
Q Consensus        18 ~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~----~~   89 (216)
                      .-+||||||-  -..+.++++...|+++|+-+|.+|-.+..++..+....     .....++.+|+....  ..    .+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEEEEeCCCCCHHHHhcCHHHHh
Confidence            3599999997  33567788888899999999999999999988876631     123789999986311  00    01


Q ss_pred             Ccc-----EEEecCCCCc---------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         90 PFD-----AIYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        90 ~~D-----~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      -+|     .++....+++         ++..+...|.||++|+++..+..
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            222     3344444433         45788899999999999876553

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.28  E-value=0.0021  Score=53.08  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEH---MREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      ..++.+|+-+|+|. |.++..+++..+  .+|++++.   ++..++.+++.    |     ...+.....+... ....+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~----G-----a~~v~~~~~~~~~-~~~~~  237 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEEL----G-----ATYVNSSKTPVAE-VKLVG  237 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHc----C-----CEEecCCccchhh-hhhcC
Confidence            35789999999988 888888888864  48999986   56666655432    1     1111111111111 11124


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .+|+|+........+....+.|+++|.+++.
T Consensus       238 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         238 EFDLIIEATGVPPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CCCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence            6999999887766778889999999998764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=97.26  E-value=0.0026  Score=52.29  Aligned_cols=91  Identities=10%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      +++|++||-+|||+ |.++..++++.....+|+++|.+++.++.+++ +.          .. ....+.    .....+|
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~----------~~-~~~~~~----~~~~g~d  224 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD----------ET-YLIDDI----PEDLAVD  224 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC----------ce-eehhhh----hhccCCc
Confidence            46799999999987 77777777753223589999999988877754 11          11 111111    1112489


Q ss_pred             EEEecCC---CCchHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTY---VPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~---~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|+-..+   ....+....+.|+++|++++.
T Consensus       225 ~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         225 HAFECVGGRGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             EEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence            9997665   345678888999999999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.16  E-value=0.0015  Score=54.35  Aligned_cols=104  Identities=24%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i   94 (216)
                      .+.+|||.=+|+|.=++..++.++....|+.-|+|++.++..++++..++++   ..++.+.+.|+.... .....||+|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~~~~~~fD~I  125 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLYSRQERFDVI  125 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhhhccccCCEE
Confidence            4568999999999999999988644458999999999999999999887752   125788888876433 246789999


Q ss_pred             EecCCC-C-chHHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYV-P-EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~-~-~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      =.+.-- + .+++...+.++.||.+.++..
T Consensus       126 DlDPfGSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  126 DLDPFGSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             EE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence            776443 2 367888999999999999753

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2352|consensus

Probab=97.13  E-value=0.0036  Score=52.86  Aligned_cols=102  Identities=12%  Similarity=0.118  Sum_probs=76.4

Q ss_pred             cCCCCC-eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGA-KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~-~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      ++.+-. +++.+|||.-.+...+-+..  ...|+.+|.|+-.++....+....      ..-..+...|+.....++++|
T Consensus        44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~l~fedESF  115 (482)
T KOG2352|consen   44 YLSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQLVFEDESF  115 (482)
T ss_pred             hhchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccC------CcceEEEEecchhccCCCcce
Confidence            455666 99999999998877776652  348999999999888776654321      245788888988777778899


Q ss_pred             cEEEecCCCCc----------------hHHHHHhcCCCCeEEEEeec
Q psy14962         92 DAIYLSTYVPE----------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        92 D~i~~~~~~~~----------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |+|+.-..+..                .+..++++|++||+++....
T Consensus       116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            99987666533                34688899999999766554

>KOG3201|consensus

Probab=97.07  E-value=0.00029  Score=50.72  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=69.7

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCc
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~   91 (216)
                      ..|.+||++|.|. |..++.+|... +...|...|-+++.+...++....+-.  ....++.++.-+...  ......+|
T Consensus        28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tF  104 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTF  104 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCcc
Confidence            3578899999998 55556666654 556899999999998877765443210  112333333222211  11223589


Q ss_pred             cEEEecCCC------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYV------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|++...+      ..+.+.++.+|+|.|..++..|-.
T Consensus       105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen  105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence            999987664      235688999999999987765554

>KOG1501|consensus

Probab=97.05  E-value=0.0027  Score=52.92  Aligned_cols=57  Identities=19%  Similarity=0.285  Sum_probs=48.1

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .|||+|+|||.+++..++..+.  .|+++|.-..|.+.|++...++|+    .++++++...-
T Consensus        69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~----SdkI~vInkrS  125 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM----SDKINVINKRS  125 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC----ccceeeecccc
Confidence            4799999999999988888543  899999999999999999888876    47787776543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=97.04  E-value=0.01  Score=48.57  Aligned_cols=92  Identities=16%  Similarity=0.076  Sum_probs=63.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+++|++||-.|+|. |..+..+++..  +++|++++.+++.++.+++.-.         +.  ++...  ..  ..+.+
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga---------~~--vi~~~--~~--~~~~~  224 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGA---------AS--AGGAY--DT--PPEPL  224 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCC---------ce--ecccc--cc--Ccccc
Confidence            467899999999876 77777888875  4589999999888777765321         11  11100  01  12357


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+++........+....+.|+++|++++.-
T Consensus       225 d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       225 DAAILFAPAGGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             eEEEECCCcHHHHHHHHHhhCCCcEEEEEe
Confidence            887766655667788889999999997753

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK13699 putative methylase; Provisional

Probab=97.03  E-value=0.0034  Score=48.58  Aligned_cols=47  Identities=21%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      -.+|+.|||.-||+|..+....+.   +.+.+|+|++++..+.+.+++..
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHH
Confidence            368999999999999998876665   45899999999999999998766

>KOG1562|consensus

Probab=96.86  E-value=0.0054  Score=48.62  Aligned_cols=105  Identities=21%  Similarity=0.164  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      ...++|+-||.|-|......+++ ..-..+..+|++...++..++.+..--. ....+++.+..+|.....  .+.++||
T Consensus       120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~-gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLAC-GYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhc-ccCCCceEEEeccHHHHHHHhccCCce
Confidence            45679999999999999988887 2234789999999999888887654111 133578889999875322  2467899


Q ss_pred             EEEecCCCCc----------hHHHHHhcCCCCeEEEEee
Q psy14962         93 AIYLSTYVPE----------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        93 ~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+....-+.          ....+.+.||+||+++.+.
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            9997655432          3478889999999998864

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.86  E-value=0.012  Score=48.56  Aligned_cols=97  Identities=22%  Similarity=0.155  Sum_probs=65.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~   85 (216)
                      .+.++++||-.|+|. |..+..+++..+. ..|+++|.+++..+.+++.    |     .+  .++..   +...   ..
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~~----G-----a~--~~i~~~~~~~~~~i~~~  240 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREF----G-----AT--HTVNSSGTDPVEAIRAL  240 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----C-----Cc--eEEcCCCcCHHHHHHHH
Confidence            467899999999877 8888888888642 2599999999888877542    1     11  11211   1100   01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+-............+.++++|++++.-
T Consensus       241 ~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       241 TGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence            122358999987766666777889999999998753

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.85  E-value=0.0068  Score=49.07  Aligned_cols=88  Identities=18%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .++.+|+-+|||. |.++..+++..+. ..|+++|.++..++.+...              .++  |....  ....+|+
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~--------------~~i--~~~~~--~~~g~Dv  203 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY--------------EVL--DPEKD--PRRDYRA  203 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc--------------ccc--Chhhc--cCCCCCE
Confidence            4578899999988 8888888888642 2467788888776655421              011  10000  1345899


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+-..+....+....+.|+++|++++.-
T Consensus       204 vid~~G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       204 IYDASGDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             EEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence            9988887777788899999999998753

>PHA01634 hypothetical protein

Probab=96.81  E-value=0.012  Score=40.79  Aligned_cols=46  Identities=13%  Similarity=-0.020  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      .+.+|+|+|++-|..++.++.+.+  ..|+++|+++...+..+++++-
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhh
Confidence            578999999999999999998743  3899999999999999887665

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.77  E-value=0.021  Score=47.81  Aligned_cols=97  Identities=19%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCC---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRT---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~---~   84 (216)
                      .+.++.+||..|||+ |..+..+++..+. ..++++|.+++..+.+++..           ...++...    ...   .
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~-----------~~~vi~~~~~~~~~~~l~~  248 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHL-----------GAETINFEEVDDVVEALRE  248 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcC-----------CcEEEcCCcchHHHHHHHH
Confidence            467889999999988 8899999998642 36999999999888877642           11222111    100   1


Q ss_pred             CCCCCCccEEEecCCC---------------------CchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYV---------------------PEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~---------------------~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+|+.....                     ...+..+.+.++++|.++..-
T Consensus       249 ~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         249 LTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             HcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            1123368999875432                     225677889999999998763

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG4058|consensus

Probab=96.75  E-value=0.017  Score=41.18  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=73.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .++.++.  -++..+.+|+|+|.|.+....++..  ....+|+|+++=.+..++-+.-+.+.    .++..|...|.-+.
T Consensus        63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~----~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGC----AKSTRFRRKDLWKV  134 (199)
T ss_pred             HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhc----ccchhhhhhhhhhc
Confidence            3444443  2556799999999999988888773  24789999999999888877776664    36677877776544


Q ss_pred             CCCCCCccEEEecC---CCCchHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLST---YVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~---~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ...+  |..++...   .++.+...+..-+..+..++..-.
T Consensus       135 dl~d--y~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRF  173 (199)
T KOG4058|consen  135 DLRD--YRNVVIFGAESVMPDLEDKLRTELPANTRVVACRF  173 (199)
T ss_pred             cccc--cceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEec
Confidence            4333  33333322   234455677777788887776533

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.68  E-value=0.033  Score=45.25  Aligned_cols=95  Identities=25%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC------C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG------L   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------~   85 (216)
                      .+.++.+||..|+|. |..+..+++..+  .+|++++.+++..+.+++.    +        ++.+...-...      .
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~----g--------~~~~~~~~~~~~~~~~~~  227 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKEL----G--------ADEVLNSLDDSPKDKKAA  227 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh----C--------CCEEEcCCCcCHHHHHHH
Confidence            367888999988875 888888888864  5899999999887776542    1        11111111100      1


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+++...........+.+.|+++|.++...
T Consensus       228 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         228 GLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             hcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEEC
Confidence            223569999877666667788899999999998754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.68  E-value=0.014  Score=46.60  Aligned_cols=96  Identities=22%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC---CCCCCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR---TGLLHQ   88 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~---~~~~~~   88 (216)
                      ..++++||-.|+|+ |..+..+++..+. ..|+++|.+++.++.+++.-..         .  ++.. +..   ......
T Consensus       118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~Ga~---------~--~i~~~~~~~~~~~~~~~  185 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSFGAT---------A--LAEPEVLAERQGGLQNG  185 (280)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCCc---------E--ecCchhhHHHHHHHhCC
Confidence            35789999999987 8888888888642 2488999998887777653111         1  1110 100   001122


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+|+++....-...+....+.++++|+++..-
T Consensus       186 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       186 RGVDVALEFSGATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCCCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence            358999987776777788899999999998753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.65  E-value=0.014  Score=49.19  Aligned_cols=88  Identities=17%  Similarity=0.008  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .+|++|+-+|+|+ |......++..+  ++|+++|.++.....|...    |        ......+  . ..  ..+|+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~----G--------~~~~~~~--e-~v--~~aDV  260 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAME----G--------YEVMTME--E-AV--KEGDI  260 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhc----C--------CEEccHH--H-HH--cCCCE
Confidence            5799999999999 887777787754  4899999999877766542    1        1221111  1 11  24799


Q ss_pred             EEecCCCCchHHH-HHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIPYS-ILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~~~-~~~~L~~gG~lv~~~  121 (216)
                      |+...+....+.. ..+.+|+||+++..-
T Consensus       261 VI~atG~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         261 FVTTTGNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence            9988777776654 488999999987654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.63  E-value=0.0038  Score=50.66  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCCCCccE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQAPFDA   93 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~D~   93 (216)
                      .+++||+|.|+|....++-.-...-.+++.++.|+...+.........+.     ........|+.   ........|++
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp~ad~ytl  188 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLPAADLYTL  188 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCCccceeeh
Confidence            45799999999987665544432223677888888877666554433221     22222333332   12223456777


Q ss_pred             EEecCCC-----Cc----hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV-----PE----IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~-----~~----~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++..-+     +.    .++.+..++.|||.+|+.....
T Consensus       189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            7654332     22    5688999999999999987543

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.63  E-value=0.017  Score=43.69  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCCchHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAE---LVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--------   85 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------   85 (216)
                      .+.|+|+|.-.|.-+...|.   .+++.++|+|+|++-......  ....+.+    .++++++.+|.....        
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~----~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM----SPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEEEEES-SSSTHHHHTSGSS
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc----cCceEEEECCCCCHHHHHHHHHh
Confidence            47999999999888877664   444567999999964332111  1111111    378999999975321        


Q ss_pred             CCCCCccEEEecCCC--Cch---HHHHHhcCCCCeEEEEeecC
Q psy14962         86 LHQAPFDAIYLSTYV--PEI---PYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~--~~~---~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .......+|+.+...  .++   ++....++.+|+++|+....
T Consensus       107 ~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  107 ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             ----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence            112234466665553  333   35567899999999995443

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2793|consensus

Probab=96.62  E-value=0.023  Score=44.31  Aligned_cols=102  Identities=20%  Similarity=0.164  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCCCeEEEeccCCCCCC---CCCC-c
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL-NDGRLHLRCRDGRTGLL---HQAP-F   91 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---~~~~-~   91 (216)
                      ..+||++|+|+|..++.++...  .++|...|...-. .....+....+.... ....+.+...+......   .... +
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            4579999999999998888875  4588888865433 222222211111000 01245555555442221   1133 8


Q ss_pred             cEEEecCCC------CchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYV------PEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~------~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|++..++      +.+...+...|..++.+++..
T Consensus       164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence            988877765      346678888888988655543

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.61  E-value=0.0047  Score=51.34  Aligned_cols=96  Identities=17%  Similarity=0.116  Sum_probs=65.5

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCC--
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~--   85 (216)
                      .++++++||-.|+|. |..+..+++..+  + .|+++|.+++.++.+++.-.         +  .++..   +.....  
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G--~~~Vi~~~~~~~r~~~a~~~Ga---------~--~~i~~~~~~~~~~i~~  254 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAG--ASQVVAVDLNEDKLALARELGA---------T--ATVNAGDPNAVEQVRE  254 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHcCC---------c--eEeCCCchhHHHHHHH
Confidence            467899999999877 788888888753  4 69999999998887764311         1  11111   110000  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+.+|+|+.............+.|+++|+++..-
T Consensus       255 ~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         255 LTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             HhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEc
Confidence            012368999987766667788889999999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.55  E-value=0.012  Score=44.63  Aligned_cols=104  Identities=14%  Similarity=0.044  Sum_probs=58.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhC------------------------------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIR------------------------------   65 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~------------------------------   65 (216)
                      +-++.|-+||+|++...+.-..+. -..|++.|+++++++.|++++.-..                              
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            347999999999988766544222 2489999999999999998765100                              


Q ss_pred             ------CCCC-CCCCeEEEeccCCCCC-----CCCCCccEEEecCCCC---------------chHHHHHhcCCCCeEEE
Q psy14962         66 ------PDLL-NDGRLHLRCRDGRTGL-----LHQAPFDAIYLSTYVP---------------EIPYSILLQLKPGGRLV  118 (216)
Q Consensus        66 ------~~~~-~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~gG~lv  118 (216)
                            +... +.....+...|+....     ......|+|+.+.+..               .++..+..+|-.++++.
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~  211 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA  211 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence                  0001 1233567777766421     1223469999988752               26689999995556555


Q ss_pred             Ee
Q psy14962        119 CG  120 (216)
Q Consensus       119 ~~  120 (216)
                      ++
T Consensus       212 v~  213 (246)
T PF11599_consen  212 VS  213 (246)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.54  E-value=0.0097  Score=41.47  Aligned_cols=86  Identities=22%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CCCCCCCccEEEecCC
Q psy14962         26 GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GLLHQAPFDAIYLSTY   99 (216)
Q Consensus        26 G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~D~i~~~~~   99 (216)
                      |.|..+..+++..+  .+|+++|.++..++.+++...           -.++..+-..      ....+..+|+|+-..+
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga-----------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGA-----------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG   67 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTE-----------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcc-----------cccccccccccccccccccccccceEEEEecC
Confidence            35788899999975  699999999998888876421           1122221110      1112347999999998


Q ss_pred             CCchHHHHHhcCCCCeEEEEeecCC
Q psy14962        100 VPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus       100 ~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....+....++++++|++++.-...
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             cHHHHHHHHHHhccCCEEEEEEccC
Confidence            8888899999999999999875544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.53  E-value=0.029  Score=45.88  Aligned_cols=96  Identities=23%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-----CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-----GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~   85 (216)
                      .+.+|.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++...         +  .++...-..     ..
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ga---------~--~~i~~~~~~~~~~~~~  226 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKALGA---------D--FVINSGQDDVQEIREL  226 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCC---------C--EEEcCCcchHHHHHHH
Confidence            357899999999877 778888888864  45 9999999888777754311         1  111111000     01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+-...-........+.|+++|++++.-
T Consensus       227 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         227 TSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence            122369999987766666677788999999998653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.42  E-value=0.037  Score=45.52  Aligned_cols=98  Identities=19%  Similarity=0.173  Sum_probs=63.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEec---cCC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCR---DGR---TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---d~~---~~   84 (216)
                      .++++.+|+-.|+|+ |..+..+++..+  .+|+++|.+++.++.+++.    +     .+.+ +....   +..   ..
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~~~~~  231 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKGF----G-----ADLTLNPKDKSAREVKKLIKA  231 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----C-----CceEecCccccHHHHHHHHHh
Confidence            467899999999987 888888888864  4899999999988877543    1     1111 10010   110   00


Q ss_pred             CCCCCCcc----EEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFD----AIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D----~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|    +|+...+-........+.|++||++++.-
T Consensus       232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEEC
Confidence            11112344    67766665666677888999999998753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.41  E-value=0.019  Score=44.02  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCC----CCC-CCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGR----TGL-LHQA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~----~~~-~~~~   89 (216)
                      ++.++||||.|.-.+=..+-.+ .-+.+.+|.|+++..++.|+..+..+ ++    ...+++....-.    ... -..+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l----~~~I~lr~qk~~~~if~giig~nE  152 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGL----ERAIRLRRQKDSDAIFNGIIGKNE  152 (292)
T ss_pred             CceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcch----hhheeEEeccCccccccccccccc
Confidence            4567899999885432222111 12568999999999999999887764 32    133444433211    111 1247


Q ss_pred             CccEEEecCCCCchHHHHH
Q psy14962         90 PFDAIYLSTYVPEIPYSIL  108 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~  108 (216)
                      .||++.|+.+++.......
T Consensus       153 ~yd~tlCNPPFh~s~~da~  171 (292)
T COG3129         153 RYDATLCNPPFHDSAADAR  171 (292)
T ss_pred             eeeeEecCCCcchhHHHHH
Confidence            8999999999988665444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.41  E-value=0.028  Score=48.61  Aligned_cols=96  Identities=22%  Similarity=0.198  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----------
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----------   83 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----------   83 (216)
                      .++.+|+-+|+|. |..+..+++..+  +.|+++|.+++.++.+++.    +        .+++..|...          
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~l----G--------a~~v~v~~~e~g~~~~gYa~  227 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSM----G--------AEFLELDFKEEGGSGDGYAK  227 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C--------CeEEecccccccccccccee
Confidence            3578999999999 788888888865  4899999999987777652    1        1222222100          


Q ss_pred             -------------CCCCCCCccEEEecCCC-----Cc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 -------------GLLHQAPFDAIYLSTYV-----PE-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 -------------~~~~~~~~D~i~~~~~~-----~~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                                   ....-..+|+|+.....     +. +.+++.+.+|||+.++=....+
T Consensus       228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                         00012458999887732     22 4588899999999987443333

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02740 Alcohol dehydrogenase-like

Probab=96.33  E-value=0.04  Score=45.96  Aligned_cols=97  Identities=20%  Similarity=0.184  Sum_probs=65.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-----CCCCC-
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-----GRTGL-   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~~-   85 (216)
                      .+++|++||-+|+|+ |..+..+++..+. ..|+++|.+++.++.+++.    |     .+  .++...     ..... 
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~~----G-----a~--~~i~~~~~~~~~~~~v~  262 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKEM----G-----IT--DFINPKDSDKPVHERIR  262 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHc----C-----Cc--EEEecccccchHHHHHH
Confidence            467899999999988 8888888888642 2699999999888877642    1     11  122111     10000 


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                       ...+.+|+|+-.......+....+.+++| |++++.-
T Consensus       263 ~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        263 EMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEc
Confidence             01126999998888777778888889896 8877643

>KOG0023|consensus

Probab=96.27  E-value=0.011  Score=47.59  Aligned_cols=96  Identities=21%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cC--CCCCC-
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DG--RTGLL-   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~--~~~~~-   86 (216)
                      .+.||.+|--+|.|- |.++..+|+.++  .+|+++|.++.-.+.+.+.+..        +.  |+..  |-  ..... 
T Consensus       178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGA--------d~--fv~~~~d~d~~~~~~~  245 (360)
T KOG0023|consen  178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGA--------DV--FVDSTEDPDIMKAIMK  245 (360)
T ss_pred             CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCc--------ce--eEEecCCHHHHHHHHH
Confidence            356899998888865 999999999985  5999999998766666655422        11  2211  11  11110 


Q ss_pred             -CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         87 -HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        87 -~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                       .+.-.|.+..-  ..+.+..+.++||++|.+++.-.
T Consensus       246 ~~dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  246 TTDGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             hhcCcceeeeec--cccchHHHHHHhhcCCEEEEEeC
Confidence             12233444422  55666888999999999988643

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.24  E-value=0.014  Score=47.89  Aligned_cols=95  Identities=21%  Similarity=0.210  Sum_probs=62.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~   85 (216)
                      .+.++.+||-.|+|+ |..+..+++..+  .. |++++.+++..+.+++.    +     ..  .++..+-.     ...
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~~----G-----a~--~~i~~~~~~~~~~~~~  223 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDINSEKLALAKSL----G-----AM--QTFNSREMSAPQIQSV  223 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHc----C-----Cc--eEecCcccCHHHHHHH
Confidence            356889999999987 888888888864  44 78899888887766442    1     11  11111100     001


Q ss_pred             CCCCCcc-EEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFD-AIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D-~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+| +|+-..+....+....+.|++||++++.
T Consensus       224 ~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        224 LRELRFDQLILETAGVPQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             hcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            1223577 7776666566778888999999998875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=96.16  E-value=0.055  Score=43.99  Aligned_cols=99  Identities=23%  Similarity=0.160  Sum_probs=71.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCC--CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRT--GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~--~~   85 (216)
                      ++++|++|.-+|||. |..++.-|+..+ ..+++++|+++.-++.|++.-..           +++..    |...  ..
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~fGAT-----------~~vn~~~~~~vv~~i~~  249 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKFGAT-----------HFVNPKEVDDVVEAIVE  249 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhcCCc-----------eeecchhhhhHHHHHHH
Confidence            478999999999988 777777777754 35999999999999988875332           22221    1111  11


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ..++..|.++........+++....++++|..++.-..
T Consensus       250 ~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~  287 (366)
T COG1062         250 LTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA  287 (366)
T ss_pred             hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence            12346788888888777888888999999998776433

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.13  E-value=0.066  Score=45.20  Aligned_cols=106  Identities=20%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCC--
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKT-GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRT--   83 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~--   83 (216)
                      .+++|++|+-+| +|. |..+..+++..+.+ .+|+++|.+++.++.+++.+..... ..+. ...++..    +...  
T Consensus       172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga-~~~~i~~~~~~~~~~~v  249 (410)
T cd08238         172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGI-ELLYVNPATIDDLHATL  249 (410)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCc-eEEEECCCccccHHHHH
Confidence            357889999997 566 88888888875422 3799999999999888774211000 0000 1112211    1100  


Q ss_pred             -CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         84 -GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 -~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                       .......+|+|+...+....+....+.++++|.+++.
T Consensus       250 ~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         250 MELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE
Confidence             0112346899988766666777888999988876654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>KOG1253|consensus

Probab=96.10  E-value=0.0089  Score=50.59  Aligned_cols=106  Identities=17%  Similarity=0.157  Sum_probs=79.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~   89 (216)
                      ..++.+|||.-|++|.-++..++.++.-.+|++.|.++..++..+++...++.+    +.+.....|+..    ......
T Consensus       107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA~~lM~~~~~~~~  182 (525)
T KOG1253|consen  107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDANVLMYEHPMVAK  182 (525)
T ss_pred             ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchHHHHHHhcccccc
Confidence            346778999999999999999999865558999999999999999888765432    334444555431    111236


Q ss_pred             CccEEEecCCC--CchHHHHHhcCCCCeEEEEeecC
Q psy14962         90 PFDAIYLSTYV--PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        90 ~~D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .||+|-.+.--  ..+++...+.++.||.+.+++..
T Consensus       183 ~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  183 FFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             ccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence            79999876442  34789999999999999998644

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.08  E-value=0.048  Score=44.73  Aligned_cols=102  Identities=21%  Similarity=0.197  Sum_probs=76.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIY   95 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~   95 (216)
                      ..+|+|.-+|+|.=++..+...+. .+|+.-|++|.+++.+++++..+.     +.+..++..|+...... ...||+|=
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~~~~fd~ID  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHELHRAFDVID  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhcCCCccEEe
Confidence            678999999999999999988643 289999999999999999998752     24566666776533222 36799986


Q ss_pred             ecCCC-C-chHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYV-P-EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~-~-~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+.-- + -+++...+.++.+|++-++....
T Consensus       127 iDPFGSPaPFlDaA~~s~~~~G~l~vTATD~  157 (380)
T COG1867         127 IDPFGSPAPFLDAALRSVRRGGLLCVTATDT  157 (380)
T ss_pred             cCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence            65332 2 25578888889999998876443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.05  E-value=0.075  Score=41.43  Aligned_cols=96  Identities=27%  Similarity=0.321  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-----CCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-----LLH   87 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~   87 (216)
                      +.++.+||..|+|+ |..+..+++..+  .+|++++.++...+.+++...         ..  ++.......     ...
T Consensus       132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~g~---------~~--~~~~~~~~~~~~~~~~~  198 (271)
T cd05188         132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKELGA---------DH--VIDYKEEDLEEELRLTG  198 (271)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHhCC---------ce--eccCCcCCHHHHHHHhc
Confidence            46789999999986 777777887754  599999999877766643210         11  111100000     112


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ...+|+++...........+.+.|+++|.++....
T Consensus       199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEcc
Confidence            35699999876654566778899999999887543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.98  E-value=0.031  Score=46.35  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCc
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~   91 (216)
                      +.+|++||-.|+|. |..+..+++..+  +++++++.+++....+.+   +.|     .+  .++. .+........+.+
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~---~~G-----a~--~vi~~~~~~~~~~~~~~~  248 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAIN---RLG-----AD--SFLVSTDPEKMKAAIGTM  248 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHH---hCC-----Cc--EEEcCCCHHHHHhhcCCC
Confidence            46789999999988 888888888864  478888777654332221   111     11  1111 1100000001248


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      |+|+........+....+.|+++|+++..
T Consensus       249 D~vid~~g~~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        249 DYIIDTVSAVHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence            99998766555667788999999998865

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=95.98  E-value=0.075  Score=44.13  Aligned_cols=98  Identities=16%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCCCC--
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRTGL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~~~--   85 (216)
                      .+++|++||-.|+|. |..+..+++..+. .+|+++|.+++.++.+++.-.         +.+ +...+    .....  
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~Ga---------~~~-i~~~~~~~~~~~~v~~  250 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKLGA---------TDC-VNPNDYDKPIQEVIVE  250 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHhCC---------CeE-EcccccchhHHHHHHH
Confidence            467899999999987 8888888888642 279999999998887755311         111 11111    00000  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                      ...+.+|+++-............+.++++ |++++.-
T Consensus       251 ~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       251 ITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             HhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence            01135899998777666677888899886 9887653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02827 Alcohol dehydrogenase-like

Probab=95.95  E-value=0.067  Score=44.67  Aligned_cols=96  Identities=20%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCCCCC-
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGRTGL-   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~-   85 (216)
                      .+.+|.+||-.|+|+ |..+..+++..+. ..|+++|.+++..+.+++.    |     .+  .++..     +..... 
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~l----G-----a~--~~i~~~~~~~~~~~~v~  257 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKTF----G-----VT--DFINPNDLSEPIQQVIK  257 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----C-----Cc--EEEcccccchHHHHHHH
Confidence            467899999999987 8888888888642 2588999888877777542    1     11  11111     110000 


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~  120 (216)
                       ...+.+|+|+-..+....+....+.+++| |++++.
T Consensus       258 ~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        258 RMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEE
Confidence             01225899998777666677888899998 999764

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=95.94  E-value=0.083  Score=41.72  Aligned_cols=95  Identities=21%  Similarity=0.210  Sum_probs=63.5

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++....        ..+  ....  ........
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~g~~--------~~~--~~~~--~~~~~~~~  159 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEALGPA--------DPV--AADT--ADEIGGRG  159 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHcCCC--------ccc--cccc--hhhhcCCC
Confidence            467889999999877 778888888865  35 99999888887766543100        111  1000  01112346


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+++.............+.|+++|.++..-
T Consensus       160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         160 ADVVIEASGSPSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             CCEEEEccCChHHHHHHHHHhcCCcEEEEEe
Confidence            8999976555556678889999999997643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.051  Score=44.52  Aligned_cols=60  Identities=17%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             HHHHHHhcccCCC-CCeEEEEcCCCchHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHH
Q psy14962          4 ARIIELLEPKIQE-GAKVLDIGSGSGFMSCVFAELV---GK----TGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         4 ~~~~~~l~~~~~~-~~~vldiG~G~G~~~~~l~~~~---~~----~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      ..+++.+...-.| ...++|+|+|.|.++..+++..   .|    ..++..+|+|++..+.-++++..
T Consensus        64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            3444555433344 3469999999999998887765   22    34889999999998888877765

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.82  E-value=0.025  Score=46.15  Aligned_cols=96  Identities=18%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGLLHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~   88 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .++++++.+++..+.+++.    +     .+  .++..   +........
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~--~~i~~~~~~~~~~~~~~  226 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARKL----G-----AH--HYIDTSKEDVAEALQEL  226 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHc----C-----Cc--EEecCCCccHHHHHHhc
Confidence            467889999999877 888888888864  4899999888877777442    1     11  11111   110000111


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+|+++...+.........+.|+++|.++..-
T Consensus       227 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         227 GGAKLILATAPNAKAISALVGGLAPRGKLLILG  259 (333)
T ss_pred             CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence            348999976544556778889999999988653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.0038  Score=44.78  Aligned_cols=42  Identities=26%  Similarity=0.375  Sum_probs=34.3

Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ....+++.|+|++...+++        .++.+++.|||||++-+.++...
T Consensus        41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            3445678999999888876        34788999999999999988775

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=95.70  E-value=0.21  Score=41.97  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~   85 (216)
                      .+.++++||-.|+|+ |..+..+++..+. ..++.+|.+++.++.+++.    |     ..  .+...   +...   ..
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----G-----a~--~v~~~~~~~~~~~v~~~  249 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----G-----CE--TVDLSKDATLPEQIEQI  249 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----C-----Ce--EEecCCcccHHHHHHHH
Confidence            467899998899987 8888888888653 2466678888877777653    1     11  11111   1100   01


Q ss_pred             CCCCCccEEEecCCCC--------------chHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVP--------------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+++.....+              ..+....+.+++||++++.-
T Consensus       250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            1224589999877765              36788889999999998743

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.68  E-value=0.17  Score=41.59  Aligned_cols=96  Identities=27%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~~   85 (216)
                      .++++.+||-.|+|. |..+..+++..+. ..++++|.+++..+.+++.    +     .+  .++..   +...   ..
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~~v~~~~~~~~~~i~~~  230 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKEY----G-----AT--DIVDYKNGDVVEQILKL  230 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----C-----Cc--eEecCCCCCHHHHHHHH
Confidence            367889999999876 7788888888643 2689999988877666542    1     11  11111   1100   11


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+++.............+.|+++|+++..
T Consensus       231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         231 TGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             hCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence            12346999997766556778889999999998864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.68  E-value=0.11  Score=42.92  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEec-cCCCCC--C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCR-DGRTGL--L   86 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-d~~~~~--~   86 (216)
                      .+.+|++||-.|+ |. |..+..+++..+  .+|++++.+++..+.+++.+   |     .+.+ +.... +.....  .
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---G-----a~~vi~~~~~~~~~~~i~~~  224 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---G-----FDEAFNYKEEPDLDAALKRY  224 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---C-----CCEEEECCCcccHHHHHHHH
Confidence            4678999999998 54 888899998864  58999998888776665322   1     1111 11001 111000  0


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+.+|+|+-...- .......+.|+++|++++.
T Consensus       225 ~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        225 FPEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             CCCCcEEEEECCCH-HHHHHHHHHhccCCEEEEE
Confidence            12358999876553 4667888999999998864

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.67  E-value=0.1  Score=42.10  Aligned_cols=91  Identities=23%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .++++++.+++..+.+++.    +     ...+...    .. ......+
T Consensus       152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~~~~~~----~~-~~~~~~~  215 (319)
T cd08242         152 PITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARRL----G-----VETVLPD----EA-ESEGGGF  215 (319)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHc----C-----CcEEeCc----cc-cccCCCC
Confidence            457889999988766 777777788764  4799999888887777652    1     1111111    11 1233569


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEE
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~  119 (216)
                      |+++-...-........+.|+++|.++.
T Consensus       216 d~vid~~g~~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         216 DVVVEATGSPSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             CEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence            9999876555566778889999999987

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>KOG0822|consensus

Probab=95.67  E-value=0.059  Score=46.23  Aligned_cols=96  Identities=18%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             eEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHH-HHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         19 KVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWE-TVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .|.-+|+|-|-+.....+..   ....+++++|.+|.++-..+. +...+      ..+++++..|++....+..+.|++
T Consensus       370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W------~~~Vtii~~DMR~w~ap~eq~DI~  443 (649)
T KOG0822|consen  370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW------DNRVTIISSDMRKWNAPREQADII  443 (649)
T ss_pred             EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh------cCeeEEEeccccccCCchhhccch
Confidence            46789999998776554432   223488999999998766554 23333      378999999998655444678998


Q ss_pred             EecC--------CCCchHHHHHhcCCCCeEEEEe
Q psy14962         95 YLST--------YVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        95 ~~~~--------~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ++-.        ..++.+.-+.+.|||+|+.+=.
T Consensus       444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  444 VSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             HHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            7521        1244667788999999876543

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=95.56  E-value=0.04  Score=45.67  Aligned_cols=98  Identities=22%  Similarity=0.263  Sum_probs=63.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccC--C---CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDG--R---TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~--~---~~~   85 (216)
                      .+.+|.+||-.|+|. |..+..+++..+. ..|+++|.++...+.+++.    +     ...+ .....+.  .   ...
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~~----g-----a~~~i~~~~~~~~~~~~~~~~  250 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKEF----G-----ATDFINPKDSDKPVSEVIREM  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----C-----CCcEeccccccchHHHHHHHH
Confidence            467899999999877 7787888888642 2799999998888777542    1     1111 1000000  0   001


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                      . ...+|+|+........+....+.++++ |.++..-
T Consensus       251 ~-~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         251 T-GGGVDYSFECTGNADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             h-CCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEc
Confidence            1 245899998766566677788899885 8887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.55  E-value=0.081  Score=43.76  Aligned_cols=96  Identities=23%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      ..+|.+|+-.|+|. |..+..+++..+  ..+++++.+++....+.+.+   |     .+.+ +...+..........+|
T Consensus       178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~---G-----a~~~-i~~~~~~~~~~~~~~~D  246 (357)
T PLN02514        178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHL---G-----ADDY-LVSSDAAEMQEAADSLD  246 (357)
T ss_pred             CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhc---C-----CcEE-ecCCChHHHHHhcCCCc
Confidence            35789999888877 888888888864  47888887776554443321   1     1111 11111000000112589


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +++-..+....+....+.++++|+++..
T Consensus       247 ~vid~~g~~~~~~~~~~~l~~~G~iv~~  274 (357)
T PLN02514        247 YIIDTVPVFHPLEPYLSLLKLDGKLILM  274 (357)
T ss_pred             EEEECCCchHHHHHHHHHhccCCEEEEE
Confidence            9998766555677888999999998874

>KOG2798|consensus

Probab=95.53  E-value=0.11  Score=41.87  Aligned_cols=49  Identities=24%  Similarity=0.172  Sum_probs=34.2

Q ss_pred             HHHHHHhcccCCC------CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHH
Q psy14962          4 ARIIELLEPKIQE------GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCE   55 (216)
Q Consensus         4 ~~~~~~l~~~~~~------~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~   55 (216)
                      ..+++.|....++      ..+||--|||.|.++..++..   +..+-|-|.|--|+-
T Consensus       132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli  186 (369)
T KOG2798|consen  132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLI  186 (369)
T ss_pred             hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh---cccccccHHHHHHHH
Confidence            3455555433333      457999999999999999987   346777777766653

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=95.52  E-value=0.2  Score=41.04  Aligned_cols=98  Identities=22%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccC------CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDG------RT   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~------~~   83 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++.    +     .+.+ .....+.      ..
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~~~~~~  227 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKEL----G-----ATHTVNVRTEDTPESAEKIA  227 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHc----C-----CcEEeccccccchhHHHHHH
Confidence            467899999888876 788888888864  45 88888888776666442    1     1111 0111110      00


Q ss_pred             CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....+..+|+|+-............+.|+++|+++...
T Consensus       228 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         228 ELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             HHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence            11223459999987665556778899999999987643

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=95.41  E-value=0.19  Score=40.75  Aligned_cols=96  Identities=22%  Similarity=0.189  Sum_probs=62.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~   86 (216)
                      .+.++.+||..|+|. |..+..+++..+  .+ +++++.+++..+.+++.    +     ..  .++..+-..    ...
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~  222 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKKL----G-----AT--ETVDPSREDPEAQKED  222 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----Ce--EEecCCCCCHHHHHHh
Confidence            467889999998765 777777888754  35 88888888877666432    1     11  222211110    011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....+|+++...........+.+.|+++|+++..-
T Consensus       223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence            23569999987655566778889999999987653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.39  E-value=0.19  Score=40.74  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCC--C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRT--G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~--~   84 (216)
                      .+.+|.+||-.|+ |. |..+..+++..+  .+|++++.+++..+.+++.    |     .+.  ++..+    ...  .
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~l----G-----a~~--vi~~~~~~~~~~~~~  201 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKKL----G-----FDV--AFNYKTVKSLEETLK  201 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----CCE--EEeccccccHHHHHH
Confidence            4678999999985 44 888888998864  5899999888877766542    1     111  11111    110  0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....+.+|+|+-...-. ......++|+++|+++..
T Consensus       202 ~~~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       202 KASPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             HhCCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEe
Confidence            01124689998765543 457888999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.39  E-value=0.026  Score=37.97  Aligned_cols=32  Identities=16%  Similarity=0.362  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHM   50 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~   50 (216)
                      +....+|+|||+|.+.-.+.+.   +..=+|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCccccccc
Confidence            3457999999999998888776   4466888853

; GO: 0008168 methyltransferase activity

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.39  E-value=0.23  Score=41.22  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-c----CCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-D----GRTGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d----~~~~~   85 (216)
                      .+++|++||-.|+|. |..+..+++..+  . .|+++|.+++.++.+++.    +     .+.  ++.. +    .....
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~l----G-----a~~--~i~~~~~~~~~~~~v  249 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG--ASRIIGIDINPDKFELAKKF----G-----ATD--CVNPKDHDKPIQQVL  249 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHc----C-----CCE--EEcccccchHHHHHH
Confidence            467899999999877 778888888864  4 699999999888777542    1     111  1111 1    10000


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEe
Q psy14962         86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCG  120 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~  120 (216)
                        ...+.+|+|+....-........+.++++ |+++..
T Consensus       250 ~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~  287 (368)
T cd08300         250 VEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVII  287 (368)
T ss_pred             HHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence              01236899998766555677788899887 888765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.34  E-value=0.087  Score=43.96  Aligned_cols=93  Identities=18%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCc
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQ-CEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~   91 (216)
                      ++|++|+-.|+|. |..+..+++..+  ++|++++.+++. .+.+++    .|     .+.  ++. .+........+.+
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~----lG-----a~~--~i~~~~~~~v~~~~~~~  243 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR----LG-----ADS--FLVTTDSQKMKEAVGTM  243 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh----CC-----CcE--EEcCcCHHHHHHhhCCC
Confidence            5789999999987 888888898864  489998877543 333322    12     111  111 1100000001248


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      |+|+........+....+.++++|+++..
T Consensus       244 D~vid~~G~~~~~~~~~~~l~~~G~iv~v  272 (375)
T PLN02178        244 DFIIDTVSAEHALLPLFSLLKVSGKLVAL  272 (375)
T ss_pred             cEEEECCCcHHHHHHHHHhhcCCCEEEEE
Confidence            99998776665677888999999999865

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=95.31  E-value=0.068  Score=43.61  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CCCCCCCCCC
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GRTGLLHQAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~   90 (216)
                      ++.+||..|+|. |..+..+++..  +. .+++++.++...+.+++.    +     .+  .++..+   ........+.
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~----g-----~~--~vi~~~~~~~~~~~~~~~~  231 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAM----G-----AD--ETVNLARDPLAAYAADKGD  231 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHc----C-----CC--EEEcCCchhhhhhhccCCC
Confidence            788999988876 77888888875  34 789999888877655432    1     11  112111   1011111245


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|+++...........+.+.|+++|+++..
T Consensus       232 vd~vld~~g~~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         232 FDVVFEASGAPAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             ccEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            999998766555677889999999999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG2651|consensus

Probab=95.26  E-value=0.064  Score=44.21  Aligned_cols=43  Identities=23%  Similarity=0.235  Sum_probs=35.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE   59 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (216)
                      .+-+.|+|+|+|.|+++..++-..  +.+|.++|-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            445789999999999999998775  4599999999777666654

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.25  E-value=0.039  Score=43.39  Aligned_cols=62  Identities=19%  Similarity=0.151  Sum_probs=42.9

Q ss_pred             hHHHHHHHhcccCCCC--CeEEEEcCCCchHHHHHHHHhCCC-------cEEEEEeCCHHHHHHHHHHHHH
Q psy14962          2 QQARIIELLEPKIQEG--AKVLDIGSGSGFMSCVFAELVGKT-------GRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~-------~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      +...++......-.|.  .+|+|+|+|+|.++..+++.+...       .+++.+|.|+.+.+.-++++..
T Consensus         2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            4455555555322343  589999999999999988776522       4899999999998888877654

; PDB: 4F3N_A 1ZKD_B.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=95.25  E-value=0.12  Score=41.96  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=62.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~   90 (216)
                      .+.++.+||..|+|. |..+..+++..+  .+|++++.+++..+.+++.    +     ...  ++...-.... ...+.
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~~  225 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARKL----G-----ADE--VVDSGAELDEQAAAGG  225 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh----C-----CcE--EeccCCcchHHhccCC
Confidence            367888999999874 777777888764  4899999888877766432    1     011  1111100000 01235


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+++...........+.+.|+++|.++...
T Consensus       226 ~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         226 ADVILVTVVSGAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             CCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence            8999876555556778889999999988764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.20  E-value=0.2  Score=41.54  Aligned_cols=97  Identities=20%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-----CCCC--
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-----GRTG--   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-----~~~~--   84 (216)
                      .+.+|++||-.|+|. |..+..+++..+. .+|++++.+++..+.+++.    |     ..  .++..+     ....  
T Consensus       184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~~----G-----a~--~~i~~~~~~~~~~~~v~  251 (369)
T cd08301         184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKKF----G-----VT--EFVNPKDHDKPVQEVIA  251 (369)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----C-----Cc--eEEcccccchhHHHHHH
Confidence            467899999999877 7788888887642 2799999999888777542    1     11  111111     0000  


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                      ....+.+|+++-.......+....+.++++ |++++.-
T Consensus       252 ~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         252 EMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             HHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEEC
Confidence            011235899998766666677788899996 8887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.13  E-value=0.09  Score=41.98  Aligned_cols=69  Identities=16%  Similarity=-0.015  Sum_probs=48.0

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEEEe
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~   96 (216)
                      +|+|+.||.|.++..+.+. + -..+.++|.++...+..+.+...           .++.+|.......  ...+|+++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~   68 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTG   68 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEe
Confidence            6899999999998877665 2 22578899999988776665422           1455666543321  346899998


Q ss_pred             cCCC
Q psy14962         97 STYV  100 (216)
Q Consensus        97 ~~~~  100 (216)
                      +.+-
T Consensus        69 gpPC   72 (275)
T cd00315          69 GFPC   72 (275)
T ss_pred             CCCC
Confidence            8774

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.12  E-value=0.37  Score=39.07  Aligned_cols=91  Identities=24%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+.++.+|+-.|+|. |..+..+++..+  .+++.++.+++..+.+++.    +     ..  .++..+  ..  ....+
T Consensus       164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~--~~--~~~~v  226 (329)
T cd08298         164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELAREL----G-----AD--WAGDSD--DL--PPEPL  226 (329)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHHh----C-----Cc--EEeccC--cc--CCCcc
Confidence            467888998888876 677777777754  5899998888766666331    1     11  111111  11  23458


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      |+++...........+.+.|+++|+++..
T Consensus       227 D~vi~~~~~~~~~~~~~~~l~~~G~~v~~  255 (329)
T cd08298         227 DAAIIFAPVGALVPAALRAVKKGGRVVLA  255 (329)
T ss_pred             cEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence            98887544455678899999999999864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=95.12  E-value=0.34  Score=39.92  Aligned_cols=95  Identities=22%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---------
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---------   82 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---------   82 (216)
                      ..++.+||-.|+|. |..+..+++..  +. +|++++.+++....+++.    +     .+.  ++.....         
T Consensus       175 ~~~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~----g-----~~~--vi~~~~~~~~~~~~~i  241 (361)
T cd08231         175 VGAGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREF----G-----ADA--TIDIDELPDPQRRAIV  241 (361)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CCe--EEcCcccccHHHHHHH
Confidence            34788999888876 77888888886  45 899999888776655431    1     111  1111100         


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ........+|+++........+....+.++++|+++..-
T Consensus       242 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         242 RDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             HHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEc
Confidence            011123469999976655556677889999999998653

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=95.11  E-value=0.078  Score=43.57  Aligned_cols=97  Identities=18%  Similarity=0.144  Sum_probs=62.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCC---CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRT---GLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~   86 (216)
                      .+.++.+|+-.|+|. |..+..+++..  +. .|++++.+++..+.+++.    +     .+.+ .....+...   ...
T Consensus       169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~~----g-----a~~~i~~~~~~~~~~l~~~~  237 (351)
T cd08233         169 GFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEEL----G-----ATIVLDPTEVDVVAEVRKLT  237 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----C-----CCEEECCCccCHHHHHHHHh
Confidence            357889999998766 77777788875  44 789999888877766442    1     1111 001111100   011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....+|+++-..+.........+.|+++|.++..
T Consensus       238 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  271 (351)
T cd08233         238 GGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNV  271 (351)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence            2235999998776555677888999999998764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>KOG1227|consensus

Probab=95.07  E-value=0.027  Score=44.86  Aligned_cols=98  Identities=19%  Similarity=0.202  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSC-VFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~-~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+..|+|+-+|-||++. .+... + ...|+++|.+|..++..++.+..++.    ..+..++.+|-+.. ......|.
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V----~~r~~i~~gd~R~~-~~~~~Adr  265 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNV----MDRCRITEGDNRNP-KPRLRADR  265 (351)
T ss_pred             cccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcch----HHHHHhhhcccccc-Cccccchh
Confidence            467889999999999998 55554 2 34899999999999999988877543    24556666775433 23456888


Q ss_pred             EEecCCC--CchHHHHHhcCCCC-e-EEEE
Q psy14962         94 IYLSTYV--PEIPYSILLQLKPG-G-RLVC  119 (216)
Q Consensus        94 i~~~~~~--~~~~~~~~~~L~~g-G-~lv~  119 (216)
                      |.....-  +.--....++|||. | ++-+
T Consensus       266 VnLGLlPSse~~W~~A~k~Lk~eggsilHI  295 (351)
T KOG1227|consen  266 VNLGLLPSSEQGWPTAIKALKPEGGSILHI  295 (351)
T ss_pred             eeeccccccccchHHHHHHhhhcCCcEEEE
Confidence            8876443  12223445667774 4 4444

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=94.83  E-value=0.43  Score=38.95  Aligned_cols=96  Identities=23%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~   85 (216)
                      .++++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++..         ..  .++..   +..   ...
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~g---------~~--~vi~~~~~~~~~~i~~~  231 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEAG---------AT--DIINPKNGDIVEQILEL  231 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhC---------Cc--EEEcCCcchHHHHHHHH
Confidence            356788999888765 7788888888642 37888888777666555321         01  11111   110   011


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+++........+....+.|+++|+++..
T Consensus       232 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         232 TGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             cCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence            12346899987655445678888999999998754

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.82  E-value=0.19  Score=42.38  Aligned_cols=88  Identities=16%  Similarity=-0.010  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..|++|+-+|+|. |......++..  +.+|+++|.++.....+..    .|        ..+.  +.... .  ...|+
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G--------~~v~--~leea-l--~~aDV  253 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DG--------FRVM--TMEEA-A--KIGDI  253 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cC--------CEeC--CHHHH-H--hcCCE
Confidence            4799999999999 77777777765  4589999988865433332    11        2222  11111 1  24699


Q ss_pred             EEecCCCCchHH-HHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIPY-SILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~~-~~~~~L~~gG~lv~~~  121 (216)
                      |+...+...++. .....+|+|++++..-
T Consensus       254 VItaTG~~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       254 FITATGNKDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence            988777666654 4778999999887653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>KOG0022|consensus

Probab=94.79  E-value=0.25  Score=39.88  Aligned_cols=96  Identities=21%  Similarity=0.249  Sum_probs=67.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-----   85 (216)
                      .+.||+++.-+|+|. |.....-++..+ ..+++|+|++++-.+.|++.-..           +++. .|.....     
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~fGaT-----------e~iNp~d~~~~i~evi~  256 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEFGAT-----------EFINPKDLKKPIQEVII  256 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhcCcc-----------eecChhhccccHHHHHH
Confidence            478999999999999 555555566654 45999999999999988875322           1121 1222211     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~  120 (216)
                       ..++.+|..+......+.+.+.....++| |.-++.
T Consensus       257 EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  257 EMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             HHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEE
Confidence             12467999998888888888888888888 775554

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=94.78  E-value=0.07  Score=43.53  Aligned_cols=97  Identities=25%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCC---CCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGR---TGLLH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~---~~~~~   87 (216)
                      .+.++.+||..|+|. |..+..+++..+  .+|+++..+++..+.+++..         .+.+ .....+..   .....
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~g---------~~~v~~~~~~~~~~~l~~~~~  224 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARELG---------ADDTINVGDEDVAARLRELTD  224 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHhC---------CCEEecCcccCHHHHHHHHhC
Confidence            467889999998875 778888888864  58999988888776664321         1111 11111110   01112


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...+|+++....-......+.+.|+++|.++..
T Consensus       225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         225 GEGADVVIDATGNPASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            345899998765555677888999999998764

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.78  E-value=0.39  Score=32.75  Aligned_cols=91  Identities=23%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCCCch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCcc
Q psy14962         15 QEGAKVLDIGSGSGF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D   92 (216)
                      .+| +|+|+|.|.=. .+..++++   +..++++|+++.   .|             +..++++.-|....... -...|
T Consensus        13 ~~g-kVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------------~~g~~~v~DDitnP~~~iY~~A~   72 (129)
T COG1255          13 ARG-KVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------------PEGLRFVVDDITNPNISIYEGAD   72 (129)
T ss_pred             cCC-cEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------------cccceEEEccCCCccHHHhhCcc
Confidence            444 99999998844 44455554   469999999886   11             13478888887654322 14579


Q ss_pred             EEEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962         93 AIYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  125 (216)
                      +|++--+-+.+...+.++-+. |..+++.....+
T Consensus        73 lIYSiRpppEl~~~ildva~aVga~l~I~pL~Ge  106 (129)
T COG1255          73 LIYSIRPPPELQSAILDVAKAVGAPLYIKPLTGE  106 (129)
T ss_pred             ceeecCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence            999999988877766666555 566666554443

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=94.73  E-value=0.44  Score=39.47  Aligned_cols=96  Identities=21%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~   85 (216)
                      .+.++++||-.|+|. |..+..+++..+. ..+++++.++...+.+++.    +     ..  .++..+-.      ...
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~~----g-----~~--~~i~~~~~~~~~~v~~~  250 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKEL----G-----AT--HVINPKEEDLVAAIREI  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----C-----Cc--EEecCCCcCHHHHHHHH
Confidence            356789999988876 7888888888642 2699999998877666542    1     11  11211100      001


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      . ...+|+|+-..+.......+.+.++++|+++..-
T Consensus       251 ~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         251 T-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             h-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence            1 3468999987666667788899999999988753

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.62  E-value=0.44  Score=34.87  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.....++.+|+-+||=+-+....-  ...+..+++.+|.+...-...              .+ .|..-|...
T Consensus        13 ~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~--------------~~-~F~fyD~~~   75 (162)
T PF10237_consen   13 EFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG--------------GD-EFVFYDYNE   75 (162)
T ss_pred             HHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC--------------Cc-ceEECCCCC
Confidence            3444444433456789999999886654433  222455899999887653311              22 455555542


Q ss_pred             CCC----CCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLL----HQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~----~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...    -.++||+|+++.|+-.      ....+..++++++.+++.++..
T Consensus        76 p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~  126 (162)
T PF10237_consen   76 PEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE  126 (162)
T ss_pred             hhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence            211    1368999999999832      2245556778888888876543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=94.61  E-value=0.099  Score=42.33  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCC--
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~--   85 (216)
                      .+.+|.+||-.|+ |. |..+..+++..+  .+|++++.+++..+.+++.    |     ...  ++..   +.....  
T Consensus       140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~~----G-----a~~--vi~~~~~~~~~~v~~  206 (329)
T cd08294         140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKEL----G-----FDA--VFNYKTVSLEEALKE  206 (329)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----CCE--EEeCCCccHHHHHHH
Confidence            3678999998884 33 888888898864  5899999888877766542    1     111  1111   111000  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...+.+|+|+-...- .......+.|+++|+++..
T Consensus       207 ~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         207 AAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             HCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence            112458999865554 5567888999999998764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.61  E-value=0.33  Score=39.24  Aligned_cols=94  Identities=15%  Similarity=0.123  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+.+|+-+|+|. |......++..  +.+|+.+|.++...+.+.+    .+        ..+...+....  .-..+|+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~----~G--------~~~~~~~~l~~--~l~~aDiV  214 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITE----MG--------LSPFHLSELAE--EVGKIDII  214 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cC--------CeeecHHHHHH--HhCCCCEE
Confidence            578999999987 66656666665  4599999999776544432    11        22221110001  11358999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +...+..-+.+.+.+.++||+.++-....+.
T Consensus       215 I~t~p~~~i~~~~l~~~~~g~vIIDla~~pg  245 (296)
T PRK08306        215 FNTIPALVLTKEVLSKMPPEALIIDLASKPG  245 (296)
T ss_pred             EECCChhhhhHHHHHcCCCCcEEEEEccCCC
Confidence            9876655455777788999888775555554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.58  E-value=0.21  Score=42.39  Aligned_cols=88  Identities=16%  Similarity=-0.014  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|++|+-+|+|. |......++..  +.+|+.+|.++.....+...    |        ..+.  +....   -..+|+
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~----G--------~~v~--~l~ea---l~~aDV  270 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD----G--------FRVM--TMEEA---AELGDI  270 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc----C--------CEec--CHHHH---HhCCCE
Confidence            3789999999998 76666667665  45999999988754433221    1        1221  11111   124799


Q ss_pred             EEecCCCCchHH-HHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIPY-SILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~~-~~~~~L~~gG~lv~~~  121 (216)
                      |+.......++. ...+.+|+|++++..-
T Consensus       271 VI~aTG~~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        271 FVTATGNKDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence            998877666664 6788899999887653

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.58  E-value=0.031  Score=47.65  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=52.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCcc
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMRE----QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D   92 (216)
                      ..|+|..+|.|.++.+|...     .|..+...+.    .+...-    ..|+       +- +..|..+.. .-..+||
T Consensus       367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIy----dRGL-------IG-~yhDWCE~fsTYPRTYD  429 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIY----DRGL-------IG-VYHDWCEAFSTYPRTYD  429 (506)
T ss_pred             eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhh----hccc-------ch-hccchhhccCCCCcchh
Confidence            36999999999999888755     3444433332    222221    1121       11 112322222 1246899


Q ss_pred             EEEecCCCCc---------hHHHHHhcCCCCeEEEEee
Q psy14962         93 AIYLSTYVPE---------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        93 ~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|.++..+..         ++-++-|+|+|||.+++..
T Consensus       430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            9998877633         4567889999999999953

; GO: 0008168 methyltransferase activity

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.50  E-value=0.11  Score=42.64  Aligned_cols=100  Identities=24%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCC
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~   87 (216)
                      .+++|.+||-.|+..  |.+++.+++..+  +.++++-.+++-.+.+++....        .-+++...|+...   ...
T Consensus       139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd--------~vi~y~~~~~~~~v~~~t~  208 (326)
T COG0604         139 GLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGAD--------HVINYREEDFVEQVRELTG  208 (326)
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCC--------EEEcCCcccHHHHHHHHcC
Confidence            467899999999533  889999999975  2666666666655555443221        1122333333211   122


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +..+|+|+-.-.-..+ ....+.|+++|+++..-..
T Consensus       209 g~gvDvv~D~vG~~~~-~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         209 GKGVDVVLDTVGGDTF-AASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             CCCceEEEECCCHHHH-HHHHHHhccCCEEEEEecC
Confidence            3469999887665544 4577889999999886543

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=94.39  E-value=0.19  Score=41.07  Aligned_cols=98  Identities=18%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCC---CCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGR---TGLLH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~---~~~~~   87 (216)
                      .+.++.+||-.|+|. |..+..+++..+. .++++++.++.....+++.    +     .+. +.....+..   .....
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~~~  232 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKKL----G-----ATHTVNSAKGDAIEQVLELTD  232 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----C-----CCceeccccccHHHHHHHHhC
Confidence            356788988888866 7777778887641 4788899888776665532    1     111 111111110   01112


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...+|+++...........+.+.|+++|+++..
T Consensus       233 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         233 GRGVDVVIEAVGIPATFELCQELVAPGGHIANV  265 (345)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhccCCcEEEEe
Confidence            346999997665445667778999999998864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=94.39  E-value=1.1  Score=36.49  Aligned_cols=97  Identities=22%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCC---CCCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRT---GLLH   87 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~---~~~~   87 (216)
                      ..++.+|+-.|+|. |..+..+++..+  .+ |++++.++...+.+++.    +     ...+ .....+...   ....
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~l~~~~~  227 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKKM----G-----ATYVVNPFKEDVVKEVADLTD  227 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----CcEEEcccccCHHHHHHHhcC
Confidence            46788888877765 777777888764  45 88888777666655432    1     1110 111111100   1122


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+|+++....-......+.+.|+++|+++..-
T Consensus       228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEc
Confidence            3468999987555556778899999999987653

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.36  E-value=0.13  Score=41.99  Aligned_cols=95  Identities=17%  Similarity=0.252  Sum_probs=60.5

Q ss_pred             CCCC--CeEEEEcC-CC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cCCCCC-
Q psy14962         14 IQEG--AKVLDIGS-GS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DGRTGL-   85 (216)
Q Consensus        14 ~~~~--~~vldiG~-G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~~~-   85 (216)
                      ++++  ++||-.|+ |. |..+..+++..  +. +|++++.+++..+.+++.+   |     .+.+ +...  +..... 
T Consensus       150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~l---G-----a~~v-i~~~~~~~~~~i~  218 (345)
T cd08293         150 ITPGANQTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSEL---G-----FDAA-INYKTDNVAERLR  218 (345)
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhc---C-----CcEE-EECCCCCHHHHHH
Confidence            5555  89999987 43 88888889886  44 7999998888776665532   1     1111 1111  110000 


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                       .....+|+|+....-. ......++|+++|+++..
T Consensus       219 ~~~~~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         219 ELCPEGVDVYFDNVGGE-ISDTVISQMNENSHIILC  253 (345)
T ss_pred             HHCCCCceEEEECCCcH-HHHHHHHHhccCCEEEEE
Confidence             1124699999765544 357788999999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.29  E-value=0.47  Score=38.75  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEec-cCC---CCC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCR-DGR---TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~-d~~---~~~   85 (216)
                      .+++|++||-.|+ |. |..+..+++..+  .+|++++.+++..+.+++.+   |     .+.+ ..... +..   ...
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~l---G-----a~~vi~~~~~~~~~~~i~~~  217 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKL---G-----FDDAFNYKEEPDLDAALKRY  217 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---C-----CceeEEcCCcccHHHHHHHh
Confidence            4678999999997 44 888888898864  58999988888777776522   1     1111 11111 111   011


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      . ...+|+|+-...- .......++|+++|+++..
T Consensus       218 ~-~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         218 F-PNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             C-CCCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence            1 2468999876553 5567888999999998864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=94.25  E-value=1.1  Score=39.07  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~   90 (216)
                      |++.|.|..||+|.+.....+..+.   ...++|.+..+.+...+..++.-++.   ..+......+|-...  .....+
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~---~~~t~~~~~~dtl~~~d~~~~~~  293 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI---DYANFNIINADTLTTKEWENENG  293 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC---CccccCcccCCcCCCcccccccc
Confidence            6689999999999988765544321   13689999999999888877544331   011222223332221  112345


Q ss_pred             ccEEEecCCCCc-------------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYVPE-------------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~~~-------------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||.|+++.++..                               ++..+...|++||+..+..++.
T Consensus       294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            888877765311                               1245667899999876665544

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.19  E-value=0.64  Score=37.95  Aligned_cols=95  Identities=23%  Similarity=0.270  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCCCc
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~   91 (216)
                      +.++.+|+-.|+|. |..+..+++..+  .+++.++.+++..+.+++.    +     .+.  ++....... ....+.+
T Consensus       167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g-----~~~--vi~~~~~~~~~~~~~~~  233 (337)
T cd05283         167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALKL----G-----ADE--FIATKDPEAMKKAAGSL  233 (337)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHc----C-----CcE--EecCcchhhhhhccCCc
Confidence            56788888888866 777777888754  5899999888877766432    1     111  111110000 0013468


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+++...+.......+.+.|+++|.++..-
T Consensus       234 d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         234 DLIIDTVSASHDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             eEEEECCCCcchHHHHHHHhcCCCEEEEEe
Confidence            999977665545678889999999988653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.00  E-value=0.28  Score=34.10  Aligned_cols=91  Identities=20%  Similarity=0.109  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCchH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccE
Q psy14962         16 EGAKVLDIGSGSGFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~   93 (216)
                      ...+|+|+|-|.-.. +..+.+.   +..|+++|+.+.   .+.             ..++++.-|....... -...|+
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~-------------~g~~~v~DDif~P~l~iY~~a~l   73 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP-------------EGVNFVVDDIFNPNLEIYEGADL   73 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S--------------------STTEE---SSS--HHHHTTEEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc-------------cCcceeeecccCCCHHHhcCCcE
Confidence            345999999999554 4444444   469999999987   111             2467888887643321 145899


Q ss_pred             EEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962         94 IYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  125 (216)
                      |++-.+-+.+...+.++-+. |.-+++.....+
T Consensus        74 IYSiRPP~El~~~il~lA~~v~adlii~pL~~e  106 (127)
T PF03686_consen   74 IYSIRPPPELQPPILELAKKVGADLIIRPLGGE  106 (127)
T ss_dssp             EEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred             EEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence            99998888776666655554 677777655543

; PDB: 2K4M_A.

>KOG2352|consensus

Probab=93.98  E-value=0.12  Score=43.91  Aligned_cols=105  Identities=17%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-------CCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-------GLLH   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~   87 (216)
                      ..+.++|-+|-|.|.+...+-..++ ...+++++++|.++..|.+.+.-..     ..+.++...|+..       .-..
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q-----~~r~~V~i~dGl~~~~~~~k~~~~  367 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQ-----SDRNKVHIADGLDFLQRTAKSQQE  367 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhh-----hhhhhhhHhhchHHHHHHhhcccc
Confidence            4567899999999999887766654 4699999999999999998764311     1334555555431       1113


Q ss_pred             CCCccEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         88 QAPFDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        88 ~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +..||+++.+-.-               ..++..++..|.|.|.+++..-++.
T Consensus       368 ~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~  420 (482)
T KOG2352|consen  368 DICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN  420 (482)
T ss_pred             ccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence            4679999864332               1144678899999999998765553

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=93.95  E-value=1  Score=37.32  Aligned_cols=95  Identities=22%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GL   85 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~   85 (216)
                      +.++.+||-.|+|. |..+..+++..+  .. +++++.+++..+.+++.    +     ..  .++..+-..      ..
T Consensus       185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~l~~~  251 (367)
T cd08263         185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKEL----G-----AT--HTVNAAKEDAVAAIREI  251 (367)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHh----C-----Cc--eEecCCcccHHHHHHHH
Confidence            46788888888765 777788888764  35 88898888777666432    1     11  122111100      01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+....-........+.|+++|.++...
T Consensus       252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence            123469999976554336677889999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.85  E-value=0.65  Score=34.11  Aligned_cols=99  Identities=19%  Similarity=0.190  Sum_probs=60.2

Q ss_pred             EEcCCCchHHHHHHHHhCCCcEEEEE--eCCHHHHHH---HHHHHHHhCCCCCCCCCeEE-EeccCCCCC----CCCCCc
Q psy14962         22 DIGSGSGFMSCVFAELVGKTGRVFGV--EHMREQCED---AWETVMRIRPDLLNDGRLHL-RCRDGRTGL----LHQAPF   91 (216)
Q Consensus        22 diG~G~G~~~~~l~~~~~~~~~v~~~--D~~~~~~~~---a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~----~~~~~~   91 (216)
                      -+|=|.=.++..+++..+....++++  |..++..+.   +..++....     ..++.+ ...|+....    .....|
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-----~~g~~V~~~VDat~l~~~~~~~~~~F   76 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-----ELGVTVLHGVDATKLHKHFRLKNQRF   76 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-----hcCCccccCCCCCcccccccccCCcC
Confidence            46777778889999987645577666  444433332   223333311     123332 234554322    134789


Q ss_pred             cEEEecCCCCc-------------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYVPE-------------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~~-------------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |.|+-+.|...                   ++..+.++|+++|.+.++.....
T Consensus        77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~  129 (166)
T PF10354_consen   77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ  129 (166)
T ss_pred             CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            99998877522                   34778899999999999876654

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.82  E-value=0.27  Score=38.59  Aligned_cols=105  Identities=16%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh---C-CCcEEEEEeCCHH--------------------------HHHHHHHHHHHhCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV---G-KTGRVFGVEHMRE--------------------------QCEDAWETVMRIRP   66 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~---~-~~~~v~~~D~~~~--------------------------~~~~a~~~~~~~~~   66 (216)
                      ...|+|+||--|..++.++..+   + ++-+++++|.=+.                          .++..++++.+.+ 
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g-  153 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG-  153 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence            4589999999998776654432   2 2347888873111                          1222333332222 


Q ss_pred             CCCCCCCeEEEeccCCCCCC--CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecCC
Q psy14962         67 DLLNDGRLHLRCRDGRTGLL--HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        67 ~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                        +..+++.++.+.+.+..+  +..++-++.++..+..    .++.++..|.|||++++...+.
T Consensus       154 --l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  154 --LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             --TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             --CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence              224689999998764333  2345666666666543    5678889999999999965443

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=2.6  Score=33.09  Aligned_cols=108  Identities=14%  Similarity=0.202  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~   88 (216)
                      .-+++.+|+|+|+-.-+..+...+.+   -...+.+|+|...+....+.+....    ..-.+.-+++|.+...   +..
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y----~~l~v~~l~~~~~~~La~~~~~  152 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY----PGLEVNALCGDYELALAELPRG  152 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC----CCCeEeehhhhHHHHHhcccCC
Confidence            44789999999999888877766543   2478999999998876554443322    1234556667765221   222


Q ss_pred             CCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         89 APFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        89 ~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      +.==.++....+.+        ++.++...++||-++++-+.....
T Consensus       153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~  198 (321)
T COG4301         153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP  198 (321)
T ss_pred             CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence            22222333333322        568999999999999997766543

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=93.79  E-value=1.4  Score=36.17  Aligned_cols=95  Identities=18%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--CC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--LH   87 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--~~   87 (216)
                      +.++.+||-.|+|. |..+..+++..+. ..|+.++.+++....+.+.    +     ..  .++...-..   ..  ..
T Consensus       173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~~~  240 (350)
T cd08240         173 LVADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKAA----G-----AD--VVVNGSDPDAAKRIIKAA  240 (350)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHh----C-----Cc--EEecCCCccHHHHHHHHh
Confidence            34788999888876 7788888888642 2788888888877666432    1     11  111111000   00  01


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .+.+|+++...+.........+.|+++|+++..
T Consensus       241 ~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         241 GGGVDAVIDFVNNSATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence            126899998766556778889999999998864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=93.78  E-value=0.67  Score=38.40  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cCC---CCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DGR---TGLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~---~~~~   86 (216)
                      .+.++.+||-.|+|. |..+..+++..+. ..+++++.+++..+.+++....        .-+.....  +..   ....
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~~g~~--------~~v~~~~~~~~~~~~l~~~~  250 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQLGAT--------ECINPRDQDKPIVEVLTEMT  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHhCCC--------eecccccccchHHHHHHHHh
Confidence            467889999888876 7777888888642 2588889888877777442110        00111111  100   0011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCC-CCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLK-PGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~-~gG~lv~~~  121 (216)
                       .+.+|+|+.............+.|+ ++|+++..-
T Consensus       251 -~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         251 -DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             -CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEe
Confidence             2458999976655556677888899 999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK10083 putative oxidoreductase; Provisional

Probab=93.76  E-value=0.27  Score=40.08  Aligned_cols=99  Identities=16%  Similarity=0.043  Sum_probs=60.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHH-hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCCC-CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAEL-VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGLL-HQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~   88 (216)
                      .+.++.+|+-.|+|. |..+..+++. .+. ..+++++.+++..+.+++...         +.+ .....+...... ..
T Consensus       157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~Ga---------~~~i~~~~~~~~~~~~~~g  226 (339)
T PRK10083        157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKESGA---------DWVINNAQEPLGEALEEKG  226 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHhCC---------cEEecCccccHHHHHhcCC
Confidence            467899999999876 6777777774 342 258889988887776654311         111 000001100011 11


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+|+++....-........+.|+++|+++..-
T Consensus       227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g  259 (339)
T PRK10083        227 IKPTLIIDAACHPSILEEAVTLASPAARIVLMG  259 (339)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence            235688776555556778889999999998753

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.72  E-value=0.49  Score=37.56  Aligned_cols=102  Identities=17%  Similarity=0.088  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~   93 (216)
                      .|..|+-+| -.-..++.++-. +..-+|..+|+++..+....+.....|     .+|+..+.-|.....+.+  +.||+
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g-----~~~ie~~~~Dlr~plpe~~~~kFDv  224 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG-----YNNIEAFVFDLRNPLPEDLKRKFDV  224 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC-----ccchhheeehhcccChHHHHhhCCe
Confidence            467789888 333333333332 222489999999999999999888865     477999999988766543  78999


Q ss_pred             EEecCCCCc-----hHHHHHhcCCCC---eEEEEeecCC
Q psy14962         94 IYLSTYVPE-----IPYSILLQLKPG---GRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~-----~~~~~~~~L~~g---G~lv~~~~~~  124 (216)
                      .+.+++-.-     ++..-...||.-   |++.++..+.
T Consensus       225 fiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~res  263 (354)
T COG1568         225 FITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRES  263 (354)
T ss_pred             eecCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccc
Confidence            999887432     233333455555   7787765544

>cd05281 TDH Threonine dehydrogenase

Probab=93.71  E-value=1  Score=36.83  Aligned_cols=97  Identities=23%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCC--CCCCCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGR--TGLLHQ   88 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~--~~~~~~   88 (216)
                      ..++.+||-.|+|. |..+..+++..+  . .+++++.+++....+++.-.         +.+ .....+..  ......
T Consensus       161 ~~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~  229 (341)
T cd05281         161 DVSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKKMGA---------DVVINPREEDVVEVKSVTDG  229 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHhCc---------ceeeCcccccHHHHHHHcCC
Confidence            46788888888766 778888888764  4 68888777766655554211         110 00011110  011223


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.+|+++....-......+.+.|+++|.++...
T Consensus       230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g  262 (341)
T cd05281         230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILG  262 (341)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence            468999987655556678889999999987653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=93.70  E-value=0.81  Score=37.30  Aligned_cols=96  Identities=22%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~   85 (216)
                      .+.++.+|+..|+|. |..+..+++..+  .. +++++.++...+.+++.    +     .  ..++...-.     ...
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~~----g-----~--~~~~~~~~~~~~~~~~~  222 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAREL----G-----A--DDTINPKEEDVEKVREL  222 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHc----C-----C--CEEecCccccHHHHHHH
Confidence            357888999888776 778888888764  45 89998887766655331    1     1  111111100     011


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+++...........+.+.|+++|+++...
T Consensus       223 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         223 TEGRGADLVIEAAGSPATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEc
Confidence            123459999987555556788889999999987653

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG1098|consensus

Probab=93.69  E-value=0.071  Score=46.56  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCH
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMR   51 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~   51 (216)
                      .+.++..|||+||.+|.+....++.++.+..|+|+|+-|
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            467889999999999999999999988888999999765

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.69  E-value=0.19  Score=41.95  Aligned_cols=98  Identities=21%  Similarity=0.218  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ++.+|+-+|+|. |..+...++..+  .+|+.+|.+++.++.+...+.         ..+.....+.......-..+|+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g---------~~v~~~~~~~~~l~~~l~~aDvV  234 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFG---------GRIHTRYSNAYEIEDAVKRADLL  234 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcC---------ceeEeccCCHHHHHHHHccCCEE
Confidence            346799999987 777777777764  489999999876655443321         11111111100000001358999


Q ss_pred             EecCCC-----Cc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYV-----PE-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~-----~~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +.....     +. +.+.+.+.++|++.++-....+
T Consensus       235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~  270 (370)
T TIGR00518       235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ  270 (370)
T ss_pred             EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence            987533     22 3367778899998887655444

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PTZ00357 methyltransferase; Provisional

Probab=93.64  E-value=0.6  Score=41.79  Aligned_cols=98  Identities=19%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             eEEEEcCCCchHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHH---HHhCC-CCCCCCCeEEEeccCCCCCCC----
Q psy14962         19 KVLDIGSGSGFMSCVFAE---LVGKTGRVFGVEHMREQCEDAWETV---MRIRP-DLLNDGRLHLRCRDGRTGLLH----   87 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~---~~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~-~~~~~~~~~~~~~d~~~~~~~----   87 (216)
                      .|+-+|+|-|-+.....+   ..+-..+|+++|.++..+.....+.   ..+.. .......|+++..|+......    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999987655443   3333458999999976544443332   12210 000134689999999743221    


Q ss_pred             -------CCCccEEEec--------CCCCchHHHHHhcCCC----CeE
Q psy14962         88 -------QAPFDAIYLS--------TYVPEIPYSILLQLKP----GGR  116 (216)
Q Consensus        88 -------~~~~D~i~~~--------~~~~~~~~~~~~~L~~----gG~  116 (216)
                             -+++|+|++-        ...++.+.-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                   1369999862        1124455666777776    776

>PLN02494 adenosylhomocysteinase

Probab=93.55  E-value=0.36  Score=41.38  Aligned_cols=89  Identities=13%  Similarity=0.003  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|++|+-+|+|. |......++.+  +.+|+++|.++.....+...    +        ..+.  +... ..  ...|+
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~----G--------~~vv--~leE-al--~~ADV  312 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALME----G--------YQVL--TLED-VV--SEADI  312 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhc----C--------Ceec--cHHH-HH--hhCCE
Confidence            4689999999998 77766667665  45899999988654333221    1        1121  1111 11  24799


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  122 (216)
                      |++.....+++ ....+.+|+|++++-.-.
T Consensus       313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             EEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            99877776654 778889999999987643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.54  E-value=1.9  Score=32.97  Aligned_cols=110  Identities=12%  Similarity=0.099  Sum_probs=66.0

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCc----hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSG----FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD   80 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G----~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (216)
                      .++..++.. .....++++.|+.|    .+++..|.+ ..+++++.+-++++.+...++.+...++    .+.+.|+.++
T Consensus        31 EfISAlAAG-~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~----~~~vEfvvg~  104 (218)
T PF07279_consen   31 EFISALAAG-WNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGL----SDVVEFVVGE  104 (218)
T ss_pred             HHHHHHhcc-ccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccc----cccceEEecC
Confidence            445555422 23456888866543    233333333 2466999998888887777777766443    1446888877


Q ss_pred             CCC-CCCCCCCccEEEecCCCCchHHHHHhcCC--CCeEEEEe
Q psy14962         81 GRT-GLLHQAPFDAIYLSTYVPEIPYSILLQLK--PGGRLVCG  120 (216)
Q Consensus        81 ~~~-~~~~~~~~D~i~~~~~~~~~~~~~~~~L~--~gG~lv~~  120 (216)
                      ... ....-..+|.++.+.-.+.....+.+.++  |.|-+++.
T Consensus       105 ~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~  147 (218)
T PF07279_consen  105 APEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVC  147 (218)
T ss_pred             CHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEE
Confidence            432 22223568999999888777645555444  34655553

The function of this family is unknown.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=93.53  E-value=1.3  Score=35.98  Aligned_cols=95  Identities=21%  Similarity=0.178  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCCCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGLLH   87 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~   87 (216)
                      +.++.+||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++.    +     .+  .++..+-.     .....
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~i~~~~~  232 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAERL----G-----AD--HVLNASDDVVEEVRELTG  232 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHh----C-----Cc--EEEcCCccHHHHHHHHhC
Confidence            56789999999776 677777788764 25889998888766655332    1     11  11111100     01112


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...+|+|+.............+.|+++|+++..
T Consensus       233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence            246999998766555677888999999999865

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PLN02702 L-idonate 5-dehydrogenase

Probab=93.50  E-value=1.4  Score=36.45  Aligned_cols=98  Identities=18%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe---ccCCCC---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC---RDGRTG---L   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~d~~~~---~   85 (216)
                      .+.++.+|+-.|+|. |..+..+++..+. ..++++|.++...+.+++.    +     .+.+....   .+....   .
T Consensus       178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~~~~~~~~  247 (364)
T PLN02702        178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQL----G-----ADEIVLVSTNIEDVESEVEEI  247 (364)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----C-----CCEEEecCcccccHHHHHHHH
Confidence            457888999888865 7777888888643 2588889888776665542    1     11111110   111000   0


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                        ...+.+|+|+....-........+.|+++|+++..
T Consensus       248 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~  284 (364)
T PLN02702        248 QKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV  284 (364)
T ss_pred             hhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence              11246899998766555678889999999998764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.14  E-value=0.64  Score=41.91  Aligned_cols=105  Identities=20%  Similarity=0.229  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHHH----------HHHHhCCCC-CC-
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV------GK-----TGRVFGVEHMR---EQCEDAWE----------TVMRIRPDL-LN-   70 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~~~---~~~~~a~~----------~~~~~~~~~-~~-   70 (216)
                      .-+|+|+|-|+|.-.....+..      ++     .-+++++|..|   +.+..+.+          .+.+..... .+ 
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3579999999999766555433      12     23789999754   22222211          111111000 00 


Q ss_pred             ------CC--CeEEEeccCCCCCCC-CCCccEEEecCCCC---------chHHHHHhcCCCCeEEEEee
Q psy14962         71 ------DG--RLHLRCRDGRTGLLH-QAPFDAIYLSTYVP---------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        71 ------~~--~~~~~~~d~~~~~~~-~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~lv~~~  121 (216)
                            ..  ++++..+|+...... ...+|+++.+.-.+         .++..+.++++|||++.-.+
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence                  11  234555676533221 24699999986543         36789999999999998644

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.09  E-value=0.94  Score=36.68  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ..+|.-+|.|. |.-+..+|-.+  ++.|+.+|.|...+......+.         .++..+-.........-.+.|++|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~---------~rv~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG---------GRVHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC---------ceeEEEEcCHHHHHHHhhhccEEE
Confidence            45788899988 77777777654  5699999999988776655432         455555444321111123578887


Q ss_pred             ecCCCC-----c-hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         96 LSTYVP-----E-IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        96 ~~~~~~-----~-~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ..-.++     . ..+++.+.+|||+.++=....+..
T Consensus       237 gaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG  273 (371)
T COG0686         237 GAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG  273 (371)
T ss_pred             EEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence            644432     2 458889999999999766555543

>PRK11524 putative methyltransferase; Provisional

Probab=92.99  E-value=0.14  Score=41.06  Aligned_cols=52  Identities=15%  Similarity=0.025  Sum_probs=37.6

Q ss_pred             CCeEEEeccCCCC--CCCCCCccEEEecCCCC----------------------chHHHHHhcCCCCeEEEEeecC
Q psy14962         72 GRLHLRCRDGRTG--LLHQAPFDAIYLSTYVP----------------------EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        72 ~~~~~~~~d~~~~--~~~~~~~D~i~~~~~~~----------------------~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .+..++++|....  ..++++||+|+++.++.                      .++..+.++|||||.+++.+..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            4456788887642  23457899999988752                      2457888999999999986543

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=92.91  E-value=1  Score=37.66  Aligned_cols=97  Identities=18%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCC---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGR---T   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~---~   83 (216)
                      .+++|.+||-.|+|. |..+..+++..+. ..|++++.+++..+.+++.    +     .+.+ +...     +..   .
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~~----g-----~~~~-v~~~~~~~~~~~~~v~  268 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKEM----G-----ADYV-FNPTKMRDCLSGEKVM  268 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----C-----CCEE-EcccccccccHHHHHH
Confidence            467899998888877 7777888888642 2799999888765555442    1     1111 1111     100   0


Q ss_pred             CCCCCCCccEEEecCCCC-chHHHHHhcCCCCeEEEEe
Q psy14962         84 GLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....+..+|+|+....-. .......+.|+++|+++..
T Consensus       269 ~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         269 EVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             HhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence            112234689998765532 3567788999999999864

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>KOG2078|consensus

Probab=92.87  E-value=0.081  Score=44.22  Aligned_cols=64  Identities=16%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ..++|..|.|+.||.|-+++-++++   +..|++.|.++++++..+.++..+-.   .+.++.....|+.
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~  309 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAK  309 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHH
Confidence            3578999999999999999998887   47999999999999999888765332   1234666666653

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=92.84  E-value=1.3  Score=36.08  Aligned_cols=97  Identities=16%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-CC---CC-C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-RT---GL-L   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~---~~-~   86 (216)
                      .+.++.+||-.|+|. |..+..+++... +.++++++.+++..+.+++.    +     .+.  ++.... ..   .. .
T Consensus       159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~~----g-----~~~--v~~~~~~~~~~~~v~~  226 (338)
T PRK09422        159 GIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKEV----G-----ADL--TINSKRVEDVAKIIQE  226 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHc----C-----CcE--EecccccccHHHHHHH
Confidence            467899999999766 777788888631 45899999999888777432    1     111  111110 00   00 0


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+.+|.++.+...........+.|+++|.++..-
T Consensus       227 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        227 KTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             hcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEe
Confidence            11247855555555567788899999999988753

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=92.76  E-value=2  Score=35.00  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=60.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~   85 (216)
                      .+.++.+||-.|+|. |..+..+++..+. ..+++++.+++....+.+.    +        ...+..+-.      ...
T Consensus       164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~~----g--------~~~~~~~~~~~~~~l~~~  230 (344)
T cd08284         164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAAL----G--------AEPINFEDAEPVERVREA  230 (344)
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHHh----C--------CeEEecCCcCHHHHHHHH
Confidence            356788998888766 7777778887541 3788888777665554431    1        111111111      001


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+++.............+.++++|+++..-
T Consensus       231 ~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g  266 (344)
T cd08284         231 TEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVG  266 (344)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEC
Confidence            123468999986665556778889999999987653

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=92.75  E-value=1.7  Score=35.94  Aligned_cols=96  Identities=20%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~   84 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .. |++++.++...+.+++.    +     .  ..++..+   ..   ..
T Consensus       179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~~----g-----~--~~vv~~~~~~~~~~l~~  245 (363)
T cd08279         179 RVRPGDTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARRF----G-----A--THTVNASEDDAVEAVRD  245 (363)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHh----C-----C--eEEeCCCCccHHHHHHH
Confidence            457888998888865 778788888764  44 88988888776655421    1     1  1122111   10   01


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++....-........+.|+++|+++...
T Consensus       246 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         246 LTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             HcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEe
Confidence            1123458999876655556678889999999987653

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>KOG1099|consensus

Probab=92.67  E-value=0.089  Score=40.43  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCC----C-c---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGK----T-G---RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----   85 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~----~-~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----   85 (216)
                      .+|+|+++.+|.++..+.+++-.    . .   .++++|+.+-.                ....+.-+.+|.....    
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~qlq~DIT~~stae~  106 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVIQLQGDITSASTAEA  106 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceEEeecccCCHhHHHH
Confidence            57999999999999999887632    1 1   38999975421                1244666677765321    


Q ss_pred             ----CCCCCccEEEecCCC-----Cch------------HHHHHhcCCCCeEEEEeecCC
Q psy14962         86 ----LHQAPFDAIYLSTYV-----PEI------------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~~-----~~~------------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                          ...++.|+|+|+..-     |.+            +.-...+|+|||.||.-..-.
T Consensus       107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg  166 (294)
T KOG1099|consen  107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG  166 (294)
T ss_pred             HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence                123578999998763     221            133447999999999865443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=92.63  E-value=0.53  Score=40.42  Aligned_cols=90  Identities=14%  Similarity=-0.076  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|.+|+-+|+|. |......++.+  +.+|+.+|.++.....+..    .|        ..+.  +....   -...|+
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G--------~~~~--~leel---l~~ADI  312 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EG--------YQVV--TLEDV---VETADI  312 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cC--------ceec--cHHHH---HhcCCE
Confidence            3689999999998 66555555554  4589999888765433322    11        2222  11111   134799


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...-.+++ ......+|||++++-.-..
T Consensus       313 VI~atGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        313 FVTATGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             EEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence            99887666665 5788899999999876433

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=92.62  E-value=2.8  Score=34.20  Aligned_cols=97  Identities=25%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CCCC
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TGLL   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~~~   86 (216)
                      ..+|.+|+-.|+|. |..+..+++..+. ..+++++.+++..+.+++.    +     .+.  ++..   +..   ....
T Consensus       161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~l----g-----~~~--~~~~~~~~~~~~~~~~~  228 (341)
T PRK05396        161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARKM----G-----ATR--AVNVAKEDLRDVMAELG  228 (341)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh----C-----CcE--EecCccccHHHHHHHhc
Confidence            35788988888876 7788888887642 2678888777766655442    1     111  1111   110   0112


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ....+|+|+...........+.+.|+++|.++..-.
T Consensus       229 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~  264 (341)
T PRK05396        229 MTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGI  264 (341)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEec
Confidence            234689999866655667788899999999988643

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.54  E-value=0.88  Score=30.80  Aligned_cols=88  Identities=20%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             CCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCccEEEecCC
Q psy14962         25 SGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFDAIYLSTY   99 (216)
Q Consensus        25 ~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~i~~~~~   99 (216)
                      ||.|..+..+++.+.... .|+.+|.+++..+.+++.            .+.++.+|......    .-..++.+++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence            455566666666553344 899999999987766542            36789999763221    1246788887765


Q ss_pred             CCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962        100 VPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus       100 ~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      -..   ......+.+.|...++.....+
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~   99 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIARVNDP   99 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            433   2234456667778887766554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.54  E-value=0.052  Score=36.70  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             CccEEEecCCCCc------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYVPE------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~~~------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .||+|+|-....+            +++.+++.|+|||.+++...+.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w   47 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW   47 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence            4899998777533            5689999999999999965444

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2360|consensus

Probab=92.43  E-value=0.48  Score=39.25  Aligned_cols=81  Identities=11%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC--CCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~   91 (216)
                      -.+|..|+|.+|-+|.-+.+++....+.++++++|.+....+..++.+...|     ...+....+|+.....+.  ...
T Consensus       211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag-----~~~~~~~~~df~~t~~~~~~~~v  285 (413)
T KOG2360|consen  211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG-----VSIVESVEGDFLNTATPEKFRDV  285 (413)
T ss_pred             CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC-----CCccccccccccCCCCcccccce
Confidence            3578999999999999999999887767799999999999988888877755     456677788877542211  334


Q ss_pred             cEEEecCC
Q psy14962         92 DAIYLSTY   99 (216)
Q Consensus        92 D~i~~~~~   99 (216)
                      ..|+++.+
T Consensus       286 ~~iL~Dps  293 (413)
T KOG2360|consen  286 TYILVDPS  293 (413)
T ss_pred             eEEEeCCC
Confidence            55666555

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=92.42  E-value=1.7  Score=35.30  Aligned_cols=96  Identities=24%  Similarity=0.251  Sum_probs=61.5

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~   84 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .+ +++++.+++..+.+.+.    +     .+  .++..+-.      ..
T Consensus       162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~i~~  228 (343)
T cd08235         162 GIKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKKL----G-----AD--YTIDAAEEDLVEKVRE  228 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----Cc--EEecCCccCHHHHHHH
Confidence            467889998888764 777777888754  46 88888888877665431    1     11  11111100      01


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+|+....-........+.|+++|+++...
T Consensus       229 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         229 LTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             HhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEe
Confidence            1123458999976655556677889999999988643

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=92.38  E-value=0.071  Score=38.65  Aligned_cols=95  Identities=22%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCC-CCCCCccEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGL-LHQAPFDAI   94 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~-~~~~~~D~i   94 (216)
                      |.+++-+|+..=+.-....+..  ..+|..+|.++--++   +.+.         +++ .+...|+...+ .-.++||.+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~G--A~~iltveyn~L~i~---~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~   67 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHG--AAKILTVEYNKLEIQ---EEFR---------DRLSSILPVDFAKNWQKYAGSFDFA   67 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcC--CceEEEEeecccccC---cccc---------cccccccHHHHHHHHHHhhccchhh
Confidence            5778888888665555444442  347888886542111   0000         111 12222322111 113568888


Q ss_pred             EecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .+...+++                 .+..+.++|||||.+++.++-..
T Consensus        68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            77666543                 24678899999999999887664

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=92.36  E-value=2.2  Score=34.68  Aligned_cols=97  Identities=19%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---------   82 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---------   82 (216)
                      .+.++.+||-.|+|. |..+..+++..+. ..+++++.+++..+.+++.-         .  ..++..+-.         
T Consensus       158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~g---------~--~~~i~~~~~~~~~~~~~~  225 (341)
T cd08262         158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAMG---------A--DIVVDPAADSPFAAWAAE  225 (341)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHcC---------C--cEEEcCCCcCHHHHHHHH
Confidence            467889999888765 6677777887643 24788888888777665421         1  111111100         


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+.+|+++-...-........+.++++|+++...
T Consensus       226 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g  264 (341)
T cd08262         226 LARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVG  264 (341)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence            001123458999865443345677788999999988654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.06  E-value=1.4  Score=34.09  Aligned_cols=93  Identities=16%  Similarity=0.027  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCchHH-HHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMS-CVFAELVGKTGRVFGV--EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+||-+|+|.-..- ...+...  ++.|+.+  +++++..+.+.            ..++.++..+......  ..++
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~------------~~~i~~~~r~~~~~dl--~g~~   87 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKK------------YGNLKLIKGNYDKEFI--KDKH   87 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCChHHh--CCCc
Confidence            5779999999984433 2222222  4455544  78777655432            1568888766653333  3478


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|++...-+.+-..+.+..+.-|.++..+..+
T Consensus        88 LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p  119 (223)
T PRK05562         88 LIVIATDDEKLNNKIRKHCDRLYKLYIDCSDY  119 (223)
T ss_pred             EEEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence            89888777777777887777767666655544

>KOG1197|consensus

Probab=91.98  E-value=1.4  Score=34.76  Aligned_cols=97  Identities=24%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             cCCCCCeEEEE-cC-CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CCCC
Q psy14962         13 KIQEGAKVLDI-GS-GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GLLH   87 (216)
Q Consensus        13 ~~~~~~~vldi-G~-G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~   87 (216)
                      ++++|.+||-- .+ |-|.+.+.+++..+  ..+++.-.+.+-.+.|+++-..        ..+.+...|...   ....
T Consensus       143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~--------h~I~y~~eD~v~~V~kiTn  212 (336)
T KOG1197|consen  143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE--------HPIDYSTEDYVDEVKKITN  212 (336)
T ss_pred             CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc--------ceeeccchhHHHHHHhccC
Confidence            57899998643 33 44888899998864  4888887777777777776443        335566666542   2222


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....|+++=+-+-. .+..-..+||++|.++--
T Consensus       213 gKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVSf  244 (336)
T KOG1197|consen  213 GKGVDAVYDSVGKD-TFAKSLAALKPMGKMVSF  244 (336)
T ss_pred             CCCceeeeccccch-hhHHHHHHhccCceEEEe
Confidence            34577776544433 345667899999998763

>KOG1198|consensus

Probab=91.96  E-value=0.27  Score=40.61  Aligned_cols=102  Identities=17%  Similarity=0.122  Sum_probs=63.9

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--C
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--Q   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~   88 (216)
                      ...+|..||-+|.++  |..++.+|+..+  ...+....+.+..+.+++.-..        .-+++...+......+  .
T Consensus       154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~lGAd--------~vvdy~~~~~~e~~kk~~~  223 (347)
T KOG1198|consen  154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKLGAD--------EVVDYKDENVVELIKKYTG  223 (347)
T ss_pred             ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHcCCc--------EeecCCCHHHHHHHHhhcC
Confidence            367888999988876  678888899864  3455555677777666654221        1122333333222222  4


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ..||+|+-+..-......+...+++|+..++.....
T Consensus       224 ~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~  259 (347)
T KOG1198|consen  224 KGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD  259 (347)
T ss_pred             CCccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence            679999987776666667777777777766655443

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=91.95  E-value=0.54  Score=37.97  Aligned_cols=107  Identities=16%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHh-C------------------CCcEEEEEeCCH--HHHHHHHHHHHHh------------
Q psy14962         18 AKVLDIGSGSGFMSCVFAELV-G------------------KTGRVFGVEHMR--EQCEDAWETVMRI------------   64 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~-~------------------~~~~v~~~D~~~--~~~~~a~~~~~~~------------   64 (216)
                      .+||.||.|.|.-.+.++..+ .                  +...++.+|+.+  ..+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            699999999988776666555 0                  113789999765  3444444433332            


Q ss_pred             CCCCCCCCCeEEEeccCCCCCCCC-------CCccEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         65 RPDLLNDGRLHLRCRDGRTGLLHQ-------APFDAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~~~~~~~-------~~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .......-++.|.+.|+.....++       ...++|.....+.+           ++..+...++||..+++.....
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG  245 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG  245 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence            000111234677788875433211       12455543333322           4467778889988887765433

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.80  E-value=1  Score=34.29  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .|.+||-+|.|. |.--...+..  .++.|+.++....  ....+....        .++.++..+......  ..+|+|
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~--~~l~~l~~~--------~~i~~~~~~~~~~dl--~~~~lV   73 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE--SELTLLAEQ--------GGITWLARCFDADIL--EGAFLV   73 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC--HHHHHHHHc--------CCEEEEeCCCCHHHh--CCcEEE
Confidence            478999999987 4333333333  2558888865432  111122111        468887777653322  358999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++....+..-..+....+.-|.++-.+..+.
T Consensus        74 i~at~d~~ln~~i~~~a~~~~ilvn~~d~~e  104 (205)
T TIGR01470        74 IAATDDEELNRRVAHAARARGVPVNVVDDPE  104 (205)
T ss_pred             EECCCCHHHHHHHHHHHHHcCCEEEECCCcc
Confidence            9988877666777777777788886555553

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.73  E-value=3.4  Score=31.55  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      ++++|+-.|++ |.++..+++.+ ..+.+|++++.+++..+...+....       ..++.++.+|......        
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~   75 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEKA   75 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHHH
Confidence            46789999885 44444444433 2356999999988766655444333       1357778888753210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+.+|.++.+..
T Consensus        76 ~~~~~~id~ii~~ag   90 (238)
T PRK05786         76 AKVLNAIDGLVVTVG   90 (238)
T ss_pred             HHHhCCCCEEEEcCC
Confidence              0134688876654

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=91.52  E-value=3.5  Score=32.89  Aligned_cols=96  Identities=22%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---C---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---T---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~---~   84 (216)
                      .+.++.+|+-.|+|. |..+..+++..+  .+ ++++..+++..+.+.+.    +     ..  .++.....   .   .
T Consensus       126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~l~~  192 (312)
T cd08269         126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALAREL----G-----AT--EVVTDDSEAIVERVRE  192 (312)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHHh----C-----Cc--eEecCCCcCHHHHHHH
Confidence            457888988888755 677777788764  46 88888777666543321    1     11  12211100   0   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++.............+.|+++|.++...
T Consensus       193 ~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g  229 (312)
T cd08269         193 LTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFG  229 (312)
T ss_pred             HcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEc
Confidence            1123458999987655556677889999999988653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=91.45  E-value=3.5  Score=33.76  Aligned_cols=96  Identities=18%  Similarity=0.032  Sum_probs=60.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---C---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---T---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~---~~   85 (216)
                      .+.++.+|+-.|+|. |..+..+++..+. ..+++++.++...+.+.+.    +     ..  .++...-.   .   ..
T Consensus       171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~~~~~  238 (350)
T cd08256         171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARKF----G-----AD--VVLNPPEVDVVEKIKEL  238 (350)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHHc----C-----Cc--EEecCCCcCHHHHHHHH
Confidence            467888888877766 7777888888652 3578889888766555432    1     11  11111100   0   01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+++....-........+.++++|+++..
T Consensus       239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~  273 (350)
T cd08256         239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF  273 (350)
T ss_pred             hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence            12235899987655445667788999999998774

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=91.39  E-value=2.9  Score=34.11  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=60.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~~   85 (216)
                      .+.++.+|+-.|+|. |..+..+++..+. ..+++++.++...+.+++.    +     .+  .++...-.      ...
T Consensus       165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~~----g-----a~--~v~~~~~~~~~~~i~~~  232 (345)
T cd08287         165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALAREF----G-----AT--DIVAERGEEAVARVREL  232 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----C-----Cc--eEecCCcccHHHHHHHh
Confidence            456788888888877 7788888888642 2488898887655544432    1     11  11111100      001


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+++....-........+.++++|+++..
T Consensus       233 ~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~  267 (345)
T cd08287         233 TGGVGADAVLECVGTQESMEQAIAIARPGGRVGYV  267 (345)
T ss_pred             cCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence            12345899987655455678888999999998764

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.34  E-value=0.73  Score=36.37  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+|-..+|+|+.+|.++-.+.++   +-.|+++|..+ |.   .+.. .       .+.+.....|....-+.....|
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-ma---~sL~-d-------tg~v~h~r~DGfk~~P~r~~id  272 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-MA---QSLM-D-------TGQVTHLREDGFKFRPTRSNID  272 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhc---ceEEEEeccch-hh---hhhh-c-------ccceeeeeccCcccccCCCCCc
Confidence            3568889999999999999999887   55999999544 32   2222 1       2568888888875555456789


Q ss_pred             EEEecCCC
Q psy14962         93 AIYLSTYV  100 (216)
Q Consensus        93 ~i~~~~~~  100 (216)
                      ..+|+.+-
T Consensus       273 WmVCDmVE  280 (358)
T COG2933         273 WMVCDMVE  280 (358)
T ss_pred             eEEeehhc
Confidence            99998774

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=91.24  E-value=1.4  Score=34.96  Aligned_cols=93  Identities=20%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCC
Q psy14962         14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~   89 (216)
                      +.++.+|+-.|+ |. |..+..+++..  +..++.++.++ ..+.+++    .+     ..  .++.......  .....
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~~----~g-----~~--~~~~~~~~~~~~~~~~~  207 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLRS----LG-----AD--EVIDYTKGDFERAAAPG  207 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHHH----cC-----CC--EEEeCCCCchhhccCCC
Confidence            568899999986 43 77777778775  45888887655 4444422    11     11  1121111000  12234


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+|+++....-. ......+.++++|.++...
T Consensus       208 ~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         208 GVDAVLDTVGGE-TLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             CceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence            589998765544 5577788999999987653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.21  E-value=3.4  Score=33.69  Aligned_cols=93  Identities=25%  Similarity=0.294  Sum_probs=57.4

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC----CCCC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR----TGLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~   86 (216)
                      .+.++.+||-.|+ |. |..+..+++..+  +++++++.++ ..+.+++    .+     ..  .+...+-.    ....
T Consensus       174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g-----~~--~~~~~~~~~~~~~~~~  239 (350)
T cd08274         174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LG-----AD--TVILRDAPLLADAKAL  239 (350)
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cC-----Ce--EEEeCCCccHHHHHhh
Confidence            4678999999998 44 778888888864  5788887543 4444432    11     11  11111100    0011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....+|+|+....- .......+.|+++|.++..
T Consensus       240 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~  272 (350)
T cd08274         240 GGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA  272 (350)
T ss_pred             CCCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence            23468999976553 4567788999999998764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=91.20  E-value=4.1  Score=34.06  Aligned_cols=102  Identities=18%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeE-EEec-c--------
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH-LRCR-D--------   80 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~-d--------   80 (216)
                      .+.++.+|+-.|+ |+ |..+..+++..+  ..+++++.+++..+.+++.....-..   ....+ +... +        
T Consensus       190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~~G~~~~i~---~~~~~~~~~~~~~~~~~~~~  264 (393)
T cd08246         190 TVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRALGAEGVIN---RRDFDHWGVLPDVNSEAYTA  264 (393)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHcCCCEEEc---ccccccccccccccchhhhh
Confidence            3577899999997 55 778888888864  58888888888887776521100000   00000 0000 0        


Q ss_pred             -------CC---CCCCCCC-CccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         81 -------GR---TGLLHQA-PFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        81 -------~~---~~~~~~~-~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                             ..   ....... .+|+++....- .......+.++++|+++..
T Consensus       265 ~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  314 (393)
T cd08246         265 WTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC  314 (393)
T ss_pred             hhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence                   00   0001122 58999876543 4567788999999999875

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=91.15  E-value=3  Score=34.02  Aligned_cols=95  Identities=21%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCC---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRT---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~---~   84 (216)
                      .+.++.+|+-.|+|. |..+..+++..  +.++++++.+++..+.+++.    +     .+  .++..    +...   .
T Consensus       162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~----g-----~~--~~i~~~~~~~~~~~~~~  228 (345)
T cd08260         162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELAREL----G-----AV--ATVNASEVEDVAAAVRD  228 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHh----C-----CC--EEEccccchhHHHHHHH
Confidence            356788999999866 77778888876  45899998888877766431    1     11  11111    1100   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+ .+|+++....-........+.|+++|.++...
T Consensus       229 ~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         229 LTGG-GAHVSVDALGIPETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             HhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeC
Confidence            1112 69999976554456677889999999988653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.11  E-value=3.5  Score=32.66  Aligned_cols=75  Identities=20%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------CCC
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------LHQ   88 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~   88 (216)
                      +.++-.|+  |.++..+++.+..+.+|+.++.++..++...+.+...+      .++.++..|+.+..         ...
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~   74 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTL   74 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhc
Confidence            45666665  46888888777656799999998876665555444322      35777788875321         112


Q ss_pred             CCccEEEecCCC
Q psy14962         89 APFDAIYLSTYV  100 (216)
Q Consensus        89 ~~~D~i~~~~~~  100 (216)
                      +.+|+++.+...
T Consensus        75 g~id~li~nAG~   86 (275)
T PRK06940         75 GPVTGLVHTAGV   86 (275)
T ss_pred             CCCCEEEECCCc
Confidence            468999887764

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=91.04  E-value=0.75  Score=34.09  Aligned_cols=87  Identities=26%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .|.+|.-+|+|. |......++.++  .+|++.|.+.......    ..        ..+  ...+.....   ...|+|
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~----~~--------~~~--~~~~l~ell---~~aDiv   95 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGA----DE--------FGV--EYVSLDELL---AQADIV   95 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHH----HH--------TTE--EESSHHHHH---HH-SEE
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhc----cc--------ccc--eeeehhhhc---chhhhh
Confidence            578999999988 777777777664  5999999988765411    11        112  222221111   247999


Q ss_pred             EecCCCCc-----hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE-----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~-----~~~~~~~~L~~gG~lv~~~  121 (216)
                      +...+...     +-+...+.+|+|.+||=..
T Consensus        96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a  127 (178)
T PF02826_consen   96 SLHLPLTPETRGLINAEFLAKMKPGAVLVNVA  127 (178)
T ss_dssp             EE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred             hhhhccccccceeeeeeeeeccccceEEEecc
Confidence            98888632     3377888999998777643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=91.03  E-value=1.3  Score=35.99  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (216)
                      .+.++.+|+-.|+ |. |..+..+++..+  .+++.++.+++..+.+++. ...-      .+..-...+... .   +.
T Consensus       159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~v~~-~---~~  225 (334)
T PRK13771        159 GVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYV------IVGSKFSEEVKK-I---GG  225 (334)
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHh------cCchhHHHHHHh-c---CC
Confidence            4678899999998 34 888888888864  5899998888887777553 2211      001100001111 1   24


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+++....- .....+.+.|+++|.++..-
T Consensus       226 ~d~~ld~~g~-~~~~~~~~~l~~~G~~v~~g  255 (334)
T PRK13771        226 ADIVIETVGT-PTLEESLRSLNMGGKIIQIG  255 (334)
T ss_pred             CcEEEEcCCh-HHHHHHHHHHhcCCEEEEEe
Confidence            7988876543 34577888899999987754

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=90.98  E-value=0.67  Score=33.34  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=25.9

Q ss_pred             EEcCCCc--hHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH
Q psy14962         22 DIGSGSG--FMSCVFA-ELVGKTGRVFGVEHMREQCEDAWET   60 (216)
Q Consensus        22 diG~G~G--~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~   60 (216)
                      |+|+..|  .....++ +..++..+|+++|++|...+..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  6655554 3455677999999999999888888

; PDB: 2PY6_A.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=90.92  E-value=0.85  Score=38.22  Aligned_cols=75  Identities=21%  Similarity=0.216  Sum_probs=47.7

Q ss_pred             CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCCccE
Q psy14962         18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAPFDA   93 (216)
Q Consensus        18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~   93 (216)
                      .+||-+|||. |......+.+-+ ..+|+..|.+.+....+....         ..+++....|+.....   --..+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~---------~~~v~~~~vD~~d~~al~~li~~~d~   71 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELI---------GGKVEALQVDAADVDALVALIKDFDL   71 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhc---------cccceeEEecccChHHHHHHHhcCCE
Confidence            4799999966 554444322212 269999999988776665442         2367888888764321   0134699


Q ss_pred             EEecCCCCc
Q psy14962         94 IYLSTYVPE  102 (216)
Q Consensus        94 i~~~~~~~~  102 (216)
                      |+...+...
T Consensus        72 VIn~~p~~~   80 (389)
T COG1748          72 VINAAPPFV   80 (389)
T ss_pred             EEEeCCchh
Confidence            988777544

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.77  E-value=1.7  Score=34.35  Aligned_cols=41  Identities=15%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhC----CCcEEEEEeCCHHHH
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVG----KTGRVFGVEHMREQC   54 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~   54 (216)
                      +.+...++|+|||.|.++.+++....    +...++.+|......
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~   60 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH   60 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence            46777899999999999999998763    235889999866544

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG3924|consensus

Probab=90.75  E-value=1.2  Score=37.03  Aligned_cols=111  Identities=19%  Similarity=0.263  Sum_probs=69.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH-------HHHhCCCCCCCCCeEE
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET-------VMRIRPDLLNDGRLHL   76 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~   76 (216)
                      +.+++.+.  +.+++...|+|+|-|.....++...+ ...-+|+++....-+.|..+       ....|   ..+..+..
T Consensus       182 ~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~~  255 (419)
T KOG3924|consen  182 RSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIET  255 (419)
T ss_pred             HHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCceee
Confidence            34555554  78999999999999999988887743 34667777665443333322       22222   12345677


Q ss_pred             EeccCCCCCCC---CCCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962         77 RCRDGRTGLLH---QAPFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        77 ~~~d~~~~~~~---~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~  120 (216)
                      +.+++...-..   ....++|+++...-.     -...+..-+++|-+++-.
T Consensus       256 i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  256 IHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS  307 (419)
T ss_pred             cccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence            77776532211   245788888766422     124777888888888764

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.36  E-value=5.2  Score=32.52  Aligned_cols=96  Identities=25%  Similarity=0.285  Sum_probs=62.7

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CC
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~   84 (216)
                      .+.++.+||-.|+++  |..+..+++..+  .+++.+..+++..+.+.+.    +     .+.  ++..   +..   ..
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~--v~~~~~~~~~~~~~~  228 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKEL----G-----ADA--FVDFKKSDDVEAVKE  228 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHc----C-----CcE--EEcCCCccHHHHHHH
Confidence            467889999988864  778888888864  4899998888766655321    1     111  1111   110   00


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++.............+.++++|+++...
T Consensus       229 ~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g  265 (341)
T cd08297         229 LTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVG  265 (341)
T ss_pred             HhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEec
Confidence            1123468999975555566778889999999998764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=90.26  E-value=1.2  Score=30.33  Aligned_cols=89  Identities=19%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             eEEEEcCCC-chHHHHHHHHhCCCcEEEE-EeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GFMSCVFAELVGKTGRVFG-VEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~~~~~l~~~~~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|.-+|+|. |..-........++.++.+ +|.+++..+.+.+..           .+. ...|.... .....+|+|+.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-----------~~~-~~~~~~~l-l~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-----------GIP-VYTDLEEL-LADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-----------TSE-EESSHHHH-HHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-----------ccc-chhHHHHH-HHhhcCCEEEE
Confidence            577899977 3333322333334567765 599998766553331           233 33333222 12236899999


Q ss_pred             cCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         97 STYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        97 ~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+...-...+...++.|-.+++.
T Consensus        69 ~tp~~~h~~~~~~~l~~g~~v~~E   92 (120)
T PF01408_consen   69 ATPPSSHAEIAKKALEAGKHVLVE   92 (120)
T ss_dssp             ESSGGGHHHHHHHHHHTTSEEEEE
T ss_pred             ecCCcchHHHHHHHHHcCCEEEEE
Confidence            888877777778888888866663

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=90.09  E-value=0.95  Score=36.68  Aligned_cols=92  Identities=17%  Similarity=0.103  Sum_probs=55.7

Q ss_pred             CCCeEEEE--cCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CCC
Q psy14962         16 EGAKVLDI--GSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GLL   86 (216)
Q Consensus        16 ~~~~vldi--G~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~   86 (216)
                      ++..++-+  |+|. |..+..+++..+  .++++++.+++..+.+++.    +     .+  .++..+-..      ...
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~--~~i~~~~~~~~~~v~~~~  208 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKKI----G-----AE--YVLNSSDPDFLEDLKELI  208 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----Cc--EEEECCCccHHHHHHHHh
Confidence            34455443  5555 778888888864  5899999888877777542    1     11  122211110      011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....+|+++....-.. .....+.++++|+++..-
T Consensus       209 ~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         209 AKLNATIFFDAVGGGL-TGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             CCCCCcEEEECCCcHH-HHHHHHhhCCCCEEEEEE
Confidence            2235899987655433 355678899999987754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=90.08  E-value=0.68  Score=36.81  Aligned_cols=95  Identities=22%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~   84 (216)
                      .+.++.+|+-.|+ |. |..+..+++..+  ..+++++.+++..+.+++.    +     ..  .++..+-.      ..
T Consensus       133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~  199 (320)
T cd05286         133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARAA----G-----AD--HVINYRDEDFVERVRE  199 (320)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHC----C-----CC--EEEeCCchhHHHHHHH
Confidence            3568899999994 43 778888888864  5899998888776665431    1     11  12211110      01


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++....- .......+.++++|.++..-
T Consensus       200 ~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         200 ITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             HcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEe
Confidence            1123458999976554 45677789999999988653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=89.89  E-value=4.1  Score=33.86  Aligned_cols=97  Identities=13%  Similarity=0.063  Sum_probs=58.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEecc--CC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRD--GR---TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d--~~---~~   84 (216)
                      .++++.+|+-.|+|. |..+..+++..  +. +|+.++.++...+.+++.    +     .+.+ .....+  ..   ..
T Consensus       187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~--G~~~Vi~~~~~~~~~~~a~~l----G-----a~~~i~~~~~~~~~~~~v~~  255 (373)
T cd08299         187 KVTPGSTCAVFGLGGVGLSAIMGCKAA--GASRIIAVDINKDKFAKAKEL----G-----ATECINPQDYKKPIQEVLTE  255 (373)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----C-----CceEecccccchhHHHHHHH
Confidence            467889999888876 67777777775  34 799999888887777442    1     1111 111001  00   00


Q ss_pred             CCCCCCccEEEecCCCCchHHH-HHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYS-ILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~-~~~~L~~gG~lv~~~  121 (216)
                      .. .+.+|+|+-...-...+.. +...++++|+++..-
T Consensus       256 ~~-~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g  292 (373)
T cd08299         256 MT-DGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVG  292 (373)
T ss_pred             Hh-CCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEc
Confidence            11 1358999887665555555 444556788887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=89.60  E-value=2.6  Score=33.62  Aligned_cols=95  Identities=20%  Similarity=0.199  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCC
Q psy14962         14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~   90 (216)
                      +.++.+||-.|+ |. |..+..+++..+  .+|+++..+++..+.+.+.    +     .+.+.....+...... ....
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~i~~~~~~  208 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKEL----G-----ADEVVIDDGAIAEQLRAAPGG  208 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----C-----CcEEEecCccHHHHHHHhCCC
Confidence            578899999987 33 888888888864  5899998888766655331    1     1111100111100000 0346


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|+++....- .......+.|+++|+++..
T Consensus       209 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         209 FDKVLELVGT-ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             ceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence            8999876553 4567788999999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG2920|consensus

Probab=89.41  E-value=0.52  Score=37.45  Aligned_cols=38  Identities=18%  Similarity=0.138  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHH
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQC   54 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~   54 (216)
                      ..+++|||+|||+|...+......  ...+...|.+...+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence            568999999999999998888773  24788888877765

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=89.17  E-value=2.1  Score=34.31  Aligned_cols=48  Identities=29%  Similarity=0.245  Sum_probs=41.2

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      ...+++.|+|.-+|+|..+......   +-..+++|.++..++.+.+++..
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHh
Confidence            3578999999999999998876655   44899999999999999998876

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=89.17  E-value=1.8  Score=34.47  Aligned_cols=94  Identities=26%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             cCCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CC
Q psy14962         13 KIQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~   84 (216)
                      .+.++.+|+..|| | .|..+..+++..+  ..+++++.++...+.+.+.    +     ..  .++..+   ..   ..
T Consensus       136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~i~~  202 (323)
T cd08241         136 RLQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARAL----G-----AD--HVIDYRDPDLRERVKA  202 (323)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHc----C-----Cc--eeeecCCccHHHHHHH
Confidence            4567899999998 3 3777777787754  5899998888776666432    1     11  111111   10   00


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ......+|.++....- .....+.+.++++|.++..
T Consensus       203 ~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         203 LTGGRGVDVVYDPVGG-DVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             HcCCCCcEEEEECccH-HHHHHHHHhhccCCEEEEE
Confidence            1122458998876554 4456677889999998764

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=89.11  E-value=7.3  Score=32.33  Aligned_cols=97  Identities=24%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~   88 (216)
                      .+.+|.+|+-.|+|. |..+..+++..+. ..++++|.++...+.+++.    +     ...+.....+..   .... .
T Consensus       173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~~----g-----~~~v~~~~~~~~~~i~~~~-~  241 (375)
T cd08282         173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAESI----G-----AIPIDFSDGDPVEQILGLE-P  241 (375)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----C-----CeEeccCcccHHHHHHHhh-C
Confidence            356889998888876 7777888877531 2788899888777666542    1     100100000100   0011 1


Q ss_pred             CCccEEEecCCCCc-----------hHHHHHhcCCCCeEEEEe
Q psy14962         89 APFDAIYLSTYVPE-----------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        89 ~~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~  120 (216)
                      +.+|+++.......           .+....++|+++|.++..
T Consensus       242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  284 (375)
T cd08282         242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV  284 (375)
T ss_pred             CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence            35899987655432           357788999999998654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=89.06  E-value=4.3  Score=33.03  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~   93 (216)
                      ++.+|+-+|+|. |......+...+ ...|+.++.+++......+.+   +        ...... +....   -..+|+
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~---g--------~~~~~~~~~~~~---l~~aDv  241 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL---G--------GNAVPLDELLEL---LNEADV  241 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc---C--------CeEEeHHHHHHH---HhcCCE
Confidence            688999999977 655444444322 247889999876543322221   1        122221 11111   134799


Q ss_pred             EEecCCCCch---HHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPEI---PYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |++..+.+..   ...+.+..+.++.+++....|.
T Consensus       242 Vi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         242 VISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             EEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            9998887665   3333333333577888766554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK13699 putative methylase; Provisional

Probab=88.84  E-value=0.55  Score=36.37  Aligned_cols=47  Identities=11%  Similarity=-0.073  Sum_probs=29.3

Q ss_pred             EEEeccCCCC--CCCCCCccEEEecCCCC---------------------chHHHHHhcCCCCeEEEEee
Q psy14962         75 HLRCRDGRTG--LLHQAPFDAIYLSTYVP---------------------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        75 ~~~~~d~~~~--~~~~~~~D~i~~~~~~~---------------------~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +++++|....  ..+++++|+|+.+.|..                     ..+.++.++|||||.+++..
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            3455554322  23355677777666542                     24478889999999988643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=88.66  E-value=2.4  Score=34.07  Aligned_cols=92  Identities=15%  Similarity=0.105  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~   93 (216)
                      .+++|+-+|+|. |......++..  +.+|+..+.++...+.+.    ..+        ..... .+...   .-..+|+
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~----~~g--------~~~~~~~~l~~---~l~~aDi  212 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARIT----EMG--------LIPFPLNKLEE---KVAEIDI  212 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HCC--------CeeecHHHHHH---HhccCCE
Confidence            478999999977 54444444443  459999998886543332    111        11111 11111   1135899


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+...+..-+.....+.++++..++=....|
T Consensus       213 Vint~P~~ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       213 VINTIPALVLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             EEECCChHHhCHHHHhcCCCCeEEEEeCcCC
Confidence            9998776544466777888876554443434

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=88.53  E-value=6.1  Score=31.78  Aligned_cols=95  Identities=13%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             cCCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--c-CCC---C
Q psy14962         13 KIQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--D-GRT---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d-~~~---~   84 (216)
                      .+.++.+|+-.|+ | .|..+..+++..+  ..++.++.+++..+.+.+.    +     . ...+...  + ...   .
T Consensus       137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~-~~~~~~~~~~~~~~~~~~  204 (334)
T PTZ00354        137 DVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKKL----A-----A-IILIRYPDEEGFAPKVKK  204 (334)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C-----C-cEEEecCChhHHHHHHHH
Confidence            4678899998884 3 3888888888864  4777788888777766431    1     1 1111111  1 100   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ......+|+++.... ......+.+.|+++|.++..
T Consensus       205 ~~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        205 LTGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             HhCCCCceEEEECCc-hHHHHHHHHHhccCCeEEEE
Confidence            112345899987654 34667788899999998864

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=88.26  E-value=5.7  Score=30.08  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=22.6

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCC
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHM   50 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~   50 (216)
                      ...+|+-+|||. |......+...|. .+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence            367999999986 6554444434332 388888876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=88.21  E-value=5.8  Score=31.90  Aligned_cols=92  Identities=14%  Similarity=0.116  Sum_probs=58.5

Q ss_pred             CCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC----CCCCCCCC
Q psy14962         16 EGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG----RTGLLHQA   89 (216)
Q Consensus        16 ~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~   89 (216)
                      .+.+||-.|+ |. |..+..+++..+  .+++.++.+++..+.+++.    +     ...+ +...+.    .... ...
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~v-~~~~~~~~~~~~~~-~~~  212 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKKL----G-----AKEV-IPREELQEESIKPL-EKQ  212 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHc----C-----CCEE-EcchhHHHHHHHhh-ccC
Confidence            4679999987 54 778888888864  4899998888876666432    1     1111 100110    0011 134


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+|+|+....- .......+.++++|+++..-
T Consensus       213 ~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g  243 (326)
T cd08289         213 RWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSG  243 (326)
T ss_pred             CcCEEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence            58998865544 45677889999999998764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=88.21  E-value=6.6  Score=31.50  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=58.3

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------CC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------~~   84 (216)
                      .+.+|.+||-.|+ |. |..+..+++..+  ..++.+.-+++..+.+++.    +     .+  .++...-.      ..
T Consensus       136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~i~~  202 (324)
T cd08292         136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRAL----G-----IG--PVVSTEQPGWQDKVRE  202 (324)
T ss_pred             CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHhc----C-----CC--EEEcCCCchHHHHHHH
Confidence            4678899998876 43 888888888864  4777776666655544431    1     11  12211100      01


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ......+|+|+....-. ......+.|+++|+++..
T Consensus       203 ~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~  237 (324)
T cd08292         203 AAGGAPISVALDSVGGK-LAGELLSLLGEGGTLVSF  237 (324)
T ss_pred             HhCCCCCcEEEECCCCh-hHHHHHHhhcCCcEEEEE
Confidence            11234689999765543 457778999999998765

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK08324 short chain dehydrogenase; Validated

Probab=88.11  E-value=3.4  Score=37.48  Aligned_cols=76  Identities=16%  Similarity=0.031  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----C---
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----L---   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~---   86 (216)
                      +|++||-.|++ |.++..+++.+ ..+.+|+.+|.++..++.+.+.+..       ..++.++..|+....     .   
T Consensus       421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~  492 (681)
T PRK08324        421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA  492 (681)
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence            46788888763 34444444332 1256899999998776655544322       135777888865321     0   


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+.+|+|+.+.+
T Consensus       493 ~~~~g~iDvvI~~AG  507 (681)
T PRK08324        493 ALAFGGVDIVVSNAG  507 (681)
T ss_pred             HHHcCCCCEEEECCC
Confidence              1246899988776

>KOG2539|consensus

Probab=87.87  E-value=2.8  Score=35.82  Aligned_cols=104  Identities=14%  Similarity=0.036  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCchHH--HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--hCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         17 GAKVLDIGSGSGFMS--CVFAELVGKTGRVFGVEHMREQCEDAWETVMR--IRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        17 ~~~vldiG~G~G~~~--~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+.|+|.|.|.-.  ....... ..-.++.+|.+.+|.......+..  ...++.. .++  +-.+..........||
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v-~~~--~~~r~~~pi~~~~~yD  276 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIV-RKL--VFHRQRLPIDIKNGYD  276 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhc-ccc--chhcccCCCCccccee
Confidence            456788888765433  3333331 123688899999999988887654  2111000 011  1111111222345699


Q ss_pred             EEEecCCCCchH----------HHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVPEIP----------YSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~~~~----------~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|++...+....          ...++..++|+++++.....
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence            999988875532          45557888999998877554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=87.66  E-value=8.1  Score=31.62  Aligned_cols=93  Identities=15%  Similarity=0.060  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCcc
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D   92 (216)
                      ....+|+-+|||. |...........+-.+|..++.+++..+...+.+...       ..+.+.. .|.... .  ...|
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~-~--~~aD  194 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-------FNTEIYVVNSADEA-I--EEAD  194 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-------cCCcEEEeCCHHHH-H--hcCC
Confidence            3457899999997 5544433222222347888899988776655555431       1222222 222111 1  3479


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEEEE
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~  119 (216)
                      +|++.-+..+-+-.  ..|+||-.+..
T Consensus       195 iVi~aT~s~~p~i~--~~l~~G~hV~~  219 (325)
T PRK08618        195 IIVTVTNAKTPVFS--EKLKKGVHINA  219 (325)
T ss_pred             EEEEccCCCCcchH--HhcCCCcEEEe
Confidence            99987776553223  78888766543

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=87.59  E-value=1.8  Score=34.87  Aligned_cols=93  Identities=23%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CCC
Q psy14962         14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TGL   85 (216)
Q Consensus        14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~   85 (216)
                      +.++.+||-.|+ |. |..+..+++..+  .++++++.++...+.+++.+.        ..  .++..+   ..   ...
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g--------~~--~~~~~~~~~~~~~v~~~  210 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELG--------FD--AAINYKTPDLAEALKEA  210 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcC--------Cc--eEEecCChhHHHHHHHh
Confidence            567889998884 43 778888888854  589999888877666654221        11  111111   10   001


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      . .+.+|+++....- .......+.++++|+++..
T Consensus       211 ~-~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~  243 (329)
T cd05288         211 A-PDGIDVYFDNVGG-EILDAALTLLNKGGRIALC  243 (329)
T ss_pred             c-cCCceEEEEcchH-HHHHHHHHhcCCCceEEEE
Confidence            1 2468999865443 4567778899999998754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=87.50  E-value=7.5  Score=31.24  Aligned_cols=95  Identities=19%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-C------CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-R------TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~------~~   84 (216)
                      .+.++.+|+-.|+|. |..+..+++..  +.+++.++.+++..+.+.+.    +     ...  ++..+. .      ..
T Consensus       157 ~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~~  223 (336)
T cd08276         157 PLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKAL----G-----ADH--VINYRTTPDWGEEVLK  223 (336)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----CCE--EEcCCcccCHHHHHHH
Confidence            457888888777655 66667777775  45899999888877766542    1     111  111111 0      01


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++.... ........+.|+++|.++...
T Consensus       224 ~~~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~~g  259 (336)
T cd08276         224 LTGGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISLIG  259 (336)
T ss_pred             HcCCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEEEc
Confidence            112346899987654 445677889999999988653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=87.47  E-value=1.8  Score=35.37  Aligned_cols=91  Identities=21%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             CCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CCCCCCCCCC
Q psy14962         16 EGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GRTGLLHQAP   90 (216)
Q Consensus        16 ~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~   90 (216)
                      +|.+|+-.|. |. |..+..+++..+  ..++++..+ ...+.++    ..+     ..  .++...   ........+.
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~----~~g-----~~--~~~~~~~~~~~~~l~~~~~  227 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVK----SLG-----AD--DVIDYNNEDFEEELTERGK  227 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHH----HhC-----Cc--eEEECCChhHHHHHHhcCC
Confidence            4899998884 44 777777888764  477777643 3222222    211     11  111111   1111111245


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+++....-. ......+.++++|+++..-
T Consensus       228 vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g  257 (350)
T cd08248         228 FDVILDTVGGD-TEKWALKLLKKGGTYVTLV  257 (350)
T ss_pred             CCEEEECCChH-HHHHHHHHhccCCEEEEec
Confidence            89999766544 6678889999999998753

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=87.46  E-value=1.8  Score=34.80  Aligned_cols=93  Identities=19%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CCCCC-eEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCC--CCCC
Q psy14962         14 IQEGA-KVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRT--GLLH   87 (216)
Q Consensus        14 ~~~~~-~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~--~~~~   87 (216)
                      +.++. +|+-.|+ |. |..+..+++..+  ..++.++.+++..+.+++.    +     ...  ++.. +...  ....
T Consensus       142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~  208 (323)
T TIGR02823       142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKEL----G-----ASE--VIDREDLSPPGKPLE  208 (323)
T ss_pred             CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHhc----C-----CcE--EEccccHHHHHHHhc
Confidence            56788 9999997 55 778888888864  4788777666655555321    1     111  1111 1000  0011


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .+.+|+++-...-. ....+.+.|+++|+++..
T Consensus       209 ~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  240 (323)
T TIGR02823       209 KERWAGAVDTVGGH-TLANVLAQLKYGGAVAAC  240 (323)
T ss_pred             CCCceEEEECccHH-HHHHHHHHhCCCCEEEEE
Confidence            22489887765533 457788899999999775

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=87.41  E-value=7.8  Score=32.50  Aligned_cols=96  Identities=20%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--------
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--------   82 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--------   82 (216)
                      .+.++.+|+-.|+ |. |..+..+++..  +.+++.++.++...+.+++.    +     ..  .++.-+..        
T Consensus       186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~~~~~~~~~~~~~----g-----~~--~~v~~~~~~~~~~~~~  252 (398)
T TIGR01751       186 TVKPGDNVLIWGAAGGLGSYATQLARAG--GGNPVAVVSSPEKAEYCREL----G-----AE--AVIDRNDFGHWGRLPD  252 (398)
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHc----C-----CC--EEecCCCcchhhcccc
Confidence            3578899999998 44 77878888876  45788888787766666542    1     01  11110000        


Q ss_pred             --------------------CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         83 --------------------TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 --------------------~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                                          ........+|+++....- ..+....+.|+++|.++..-.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~  311 (398)
T TIGR01751       253 LNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCRRGGMVVICGG  311 (398)
T ss_pred             ccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhccCCEEEEEcc
Confidence                                000112458999887653 456778889999999887643

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.29  E-value=3.4  Score=31.07  Aligned_cols=85  Identities=18%  Similarity=0.047  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCC-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGAKVLDIGSG-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      ...+..||-+|.= +|.++..++..   ..+|+.+|+.|.+....             +++++|...-  .  ...+.+|
T Consensus        42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~l-------------p~~v~Fr~~~--~--~~~G~~D  101 (254)
T COG4017          42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFL-------------PNNVKFRNLL--K--FIRGEVD  101 (254)
T ss_pred             ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcC-------------CCCccHhhhc--C--CCCCcee
Confidence            3567899999984 47777666654   45999999999875433             3566666542  1  1246689


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEEE
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRLV  118 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~lv  118 (216)
                      +|+---++...-.+..+-+.|+-.++
T Consensus       102 livDlTGlGG~~Pe~L~~fnp~vfiV  127 (254)
T COG4017         102 LIVDLTGLGGIEPEFLAKFNPKVFIV  127 (254)
T ss_pred             EEEeccccCCCCHHHHhccCCceEEE
Confidence            99987777666666666677765444

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=87.09  E-value=11  Score=30.46  Aligned_cols=93  Identities=22%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             CCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec--cCCC--CCCCCCC
Q psy14962         17 GAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR--DGRT--GLLHQAP   90 (216)
Q Consensus        17 ~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--d~~~--~~~~~~~   90 (216)
                      +.+|+-.|+ |. |..+..+++..+. .++++++.+++..+.+++.    +     ..  .++..  +...  .....+.
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~i~~~~~~~  217 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKEL----G-----AD--HVINHHQDLAEQLEALGIEP  217 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHhc----C-----Cc--EEEeCCccHHHHHHhhCCCC
Confidence            889999885 33 7788888888641 5899998888777666431    1     11  11111  1100  0111246


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+++....-......+.+.++++|.++...
T Consensus       218 ~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g  248 (336)
T cd08252         218 VDYIFCLTDTDQHWDAMAELIAPQGHICLIV  248 (336)
T ss_pred             CCEEEEccCcHHHHHHHHHHhcCCCEEEEec
Confidence            8999876555567788899999999998753

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=87.08  E-value=10  Score=30.28  Aligned_cols=96  Identities=17%  Similarity=0.094  Sum_probs=61.2

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCC-----CC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGR-----TG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~-----~~   84 (216)
                      .++++.+|+-.|+ |. |..+..+++..+  .++++++.+++..+.+++.    +     ..  .++.. +..     ..
T Consensus       139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~  205 (324)
T cd08244         139 TLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRAL----G-----AD--VAVDYTRPDWPDQVRE  205 (324)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C-----CC--EEEecCCccHHHHHHH
Confidence            4578889999885 33 778888888864  5899999888877666431    1     11  11111 100     00


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ......+|+++....-.. .....+.|+++|+++....
T Consensus       206 ~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~  242 (324)
T cd08244         206 ALGGGGVTVVLDGVGGAI-GRAALALLAPGGRFLTYGW  242 (324)
T ss_pred             HcCCCCceEEEECCChHh-HHHHHHHhccCcEEEEEec
Confidence            112245899997655443 4778899999999887543

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>KOG2912|consensus

Probab=86.88  E-value=1.9  Score=35.00  Aligned_cols=74  Identities=14%  Similarity=0.090  Sum_probs=48.3

Q ss_pred             EEEcCCCchHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------CCCCCcc
Q psy14962         21 LDIGSGSGFMSCVF-AELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------LHQAPFD   92 (216)
Q Consensus        21 ldiG~G~G~~~~~l-~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D   92 (216)
                      +|||.|+-.+-..+ ++.  .+...+++|++......|++++.+++++    ..+.++........       .++..||
T Consensus       107 iDIgtgasci~~llg~rq--~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~yd  180 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQ--NNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYD  180 (419)
T ss_pred             eeccCchhhhHHhhhchh--ccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceee
Confidence            57776664332222 222  2468899999999999999999988764    55666555332111       1134599


Q ss_pred             EEEecCCC
Q psy14962         93 AIYLSTYV  100 (216)
Q Consensus        93 ~i~~~~~~  100 (216)
                      .+.|+.++
T Consensus       181 FcMcNPPF  188 (419)
T KOG2912|consen  181 FCMCNPPF  188 (419)
T ss_pred             EEecCCch
Confidence            99998886

>PRK07806 short chain dehydrogenase; Provisional

Probab=86.73  E-value=12  Score=28.65  Aligned_cols=98  Identities=17%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMR-EQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .+.++|-.|+. |.++..+++.+ ..+.+|++++.+. ...+.....+...      ..++.++.+|......       
T Consensus         5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~   77 (248)
T PRK07806          5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRASAVGADLTDEESVAALMDT   77 (248)
T ss_pred             CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence            45788888864 44555555443 2356888877653 2333333333321      1456777888753210       


Q ss_pred             ---CCCCccEEEecCCCC-------------------chHHHHHhcCCCCeEEEEe
Q psy14962         87 ---HQAPFDAIYLSTYVP-------------------EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~~-------------------~~~~~~~~~L~~gG~lv~~  120 (216)
                         ..+.+|+++.+....                   .+.+.+.+.++.+|.+++.
T Consensus        78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i  133 (248)
T PRK07806         78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV  133 (248)
T ss_pred             HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence               013578887655321                   1235555565666666654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=86.70  E-value=4.2  Score=32.57  Aligned_cols=87  Identities=17%  Similarity=0.077  Sum_probs=48.3

Q ss_pred             CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      .+|+-+|.|- |..-....+.-+....+++.|.+...++.+.+.            .+.....+.. ........|+|+.
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l------------gv~d~~~~~~-~~~~~~~aD~Viv   70 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL------------GVIDELTVAG-LAEAAAEADLVIV   70 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc------------Ccccccccch-hhhhcccCCEEEE
Confidence            5788888777 443333333334445678899888877766542            1111111100 0112344799999


Q ss_pred             cCCCCchH---HHHHhcCCCCeEE
Q psy14962         97 STYVPEIP---YSILLQLKPGGRL  117 (216)
Q Consensus        97 ~~~~~~~~---~~~~~~L~~gG~l  117 (216)
                      .-|+....   +++...|++|..+
T Consensus        71 avPi~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          71 AVPIEATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             eccHHHHHHHHHHhcccCCCCCEE
Confidence            98886643   4444555666554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=86.63  E-value=4.6  Score=32.65  Aligned_cols=89  Identities=21%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ..+|.-+|+|. |......+...+....|+++|.+++..+.+++.    +      . ......+....   -...|+|+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g------~-~~~~~~~~~~~---~~~aDvVi   71 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----G------L-GDRVTTSAAEA---VKGADLVI   71 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----C------C-CceecCCHHHH---hcCCCEEE
Confidence            35789999877 433222222222223799999999876655431    1      0 11111111111   13479999


Q ss_pred             ecCCCCc---hHHHHHhcCCCCeEEEE
Q psy14962         96 LSTYVPE---IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        96 ~~~~~~~---~~~~~~~~L~~gG~lv~  119 (216)
                      ...+...   +...+...++++..++.
T Consensus        72 iavp~~~~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         72 LCVPVGASGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            8877643   34556667788875543

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=86.50  E-value=4.8  Score=32.08  Aligned_cols=95  Identities=26%  Similarity=0.299  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCCCCC
Q psy14962         14 IQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGLLHQ   88 (216)
Q Consensus        14 ~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~   88 (216)
                      +.++.+|+..|+ | .|..+..+++..+  .++++++.+ ...+.+++    .+     ..  .++..   +........
T Consensus       141 ~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~~----~g-----~~--~~~~~~~~~~~~~~~~~  206 (319)
T cd08267         141 VKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVRS----LG-----AD--EVIDYTTEDFVALTAGG  206 (319)
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHHH----cC-----CC--EeecCCCCCcchhccCC
Confidence            678899999997 3 3778888888764  488888743 44444422    11     11  11111   110111223


Q ss_pred             CCccEEEecCCCC-chHHHHHhcCCCCeEEEEeec
Q psy14962         89 APFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        89 ~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+|+++....-. .........++++|.++....
T Consensus       207 ~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~  241 (319)
T cd08267         207 EKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGG  241 (319)
T ss_pred             CCCcEEEECCCchHHHHHHhhhccCCCCEEEEecc
Confidence            4689999765421 111222223999999987543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.50  E-value=6.9  Score=35.18  Aligned_cols=94  Identities=11%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--C--CCCCcc
Q psy14962         18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--L--HQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~~~D   92 (216)
                      .+|+-+|+|. |.......+..  +..++.+|.|++.++.+++            ....++.+|..+..  .  .-+..|
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~~~~L~~agi~~A~  466 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRK------------FGMKVFYGDATRMDLLESAGAAKAE  466 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh------------cCCeEEEEeCCCHHHHHhcCCCcCC
Confidence            5799999988 66555544442  4589999999998887754            23578999986432  1  124678


Q ss_pred             EEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .+++...-..   ......+.+.|+-.++....+..
T Consensus       467 ~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~  502 (621)
T PRK03562        467 VLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVD  502 (621)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            8877655433   22334455677777777665553

>smart00829 PKS_ER Enoylreductase

Probab=86.44  E-value=4  Score=31.75  Aligned_cols=99  Identities=22%  Similarity=0.168  Sum_probs=59.0

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCCC---CCC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGRT---GLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~---~~~   86 (216)
                      .+.++.+|+-.|+ |. |..+..+++..  +.++++++.++...+.+++.    +..   ... +.....+...   ...
T Consensus       101 ~~~~g~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~  171 (288)
T smart00829      101 RLRPGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAGSPEKRDFLREL----GIP---DDHIFSSRDLSFADEILRAT  171 (288)
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCC---hhheeeCCCccHHHHHHHHh
Confidence            3578899998873 43 77777788775  45899999888877766432    100   000 0100011100   111


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....+|+++.... ........+.++++|.++...
T Consensus       172 ~~~~~d~vi~~~~-~~~~~~~~~~l~~~g~~v~~g  205 (288)
T smart00829      172 GGRGVDVVLNSLA-GEFLDASLRCLAPGGRFVEIG  205 (288)
T ss_pred             CCCCcEEEEeCCC-HHHHHHHHHhccCCcEEEEEc
Confidence            2235898886544 345567789999999988654

Enoylreductase in Polyketide synthases.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=86.30  E-value=9  Score=30.38  Aligned_cols=89  Identities=26%  Similarity=0.262  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCC--CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSG--SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ++.+|+-.|+.  .|..+..+++..+  .++++++.+++..+.+++ +   +     .... +...+   .. ..+.+|+
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g-----~~~~-~~~~~---~~-~~~~~d~  195 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE-L---G-----AAEV-VVGGS---EL-SGAPVDL  195 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---C-----CcEE-Eeccc---cc-cCCCceE
Confidence            58899998883  3777788888764  589999888877766654 1   1     1111 11111   11 1235899


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++....- .......+.|+++|+++..-
T Consensus       196 vl~~~g~-~~~~~~~~~l~~~G~~v~~g  222 (305)
T cd08270         196 VVDSVGG-PQLARALELLAPGGTVVSVG  222 (305)
T ss_pred             EEECCCc-HHHHHHHHHhcCCCEEEEEe
Confidence            9876543 35677889999999988653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=86.07  E-value=3.7  Score=25.87  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCchH-HHHHHHHhCCCcEEEEEeCC
Q psy14962         17 GAKVLDIGSGSGFM-SCVFAELVGKTGRVFGVEHM   50 (216)
Q Consensus        17 ~~~vldiG~G~G~~-~~~l~~~~~~~~~v~~~D~~   50 (216)
                      .++||-+||.+|+- +..++..++.++..+++-..
T Consensus        39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE   73 (78)
T PF12242_consen   39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE   73 (78)
T ss_dssp             -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred             CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence            47999999999873 44555556667788887543

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=86.04  E-value=2.5  Score=34.01  Aligned_cols=97  Identities=22%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVE--HMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~   86 (216)
                      .+.++.+||-.|+|. |..+..+++..+  .+|+.+.  .+++....+++.    +.     ..+.....+..   ....
T Consensus       161 ~~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~~----g~-----~~~~~~~~~~~~~l~~~~  229 (306)
T cd08258         161 GIRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKEL----GA-----DAVNGGEEDLAELVNEIT  229 (306)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHh----CC-----cccCCCcCCHHHHHHHHc
Confidence            356788888777654 677777788764  4776663  333333333321    11     11101111110   0011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....+|+++.............+.|+++|.++..
T Consensus       230 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~  263 (306)
T cd08258         230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQV  263 (306)
T ss_pred             CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence            2345899987765555677888999999998864

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.99  E-value=3.3  Score=35.93  Aligned_cols=74  Identities=14%  Similarity=0.035  Sum_probs=45.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+.++.+|+-+|.|. |..+..+++..  +..|++.|..+..++.    +.+.        .+.+...+-....  -..+
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~----l~~~--------g~~~~~~~~~~~~--l~~~   71 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRP----HAER--------GVATVSTSDAVQQ--IADY   71 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHH----HHhC--------CCEEEcCcchHhH--hhcC
Confidence            355788999999987 66666666553  4699999977654332    2221        2444433211111  1347


Q ss_pred             cEEEecCCCCc
Q psy14962         92 DAIYLSTYVPE  102 (216)
Q Consensus        92 D~i~~~~~~~~  102 (216)
                      |+|+.+.+++.
T Consensus        72 D~VV~SpGi~~   82 (488)
T PRK03369         72 ALVVTSPGFRP   82 (488)
T ss_pred             CEEEECCCCCC
Confidence            99999888753

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.91  E-value=5.1  Score=35.42  Aligned_cols=93  Identities=11%  Similarity=0.012  Sum_probs=55.9

Q ss_pred             CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCcc
Q psy14962         18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D   92 (216)
                      .+++-+|||. |.......+.  .+..++.+|.+++.++.+++            .....+.+|..+..    ..-+.+|
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~  483 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCAR  483 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccC
Confidence            5677788777 5544333333  24589999999998877753            24678999986432    1124688


Q ss_pred             EEEecCCCC--c-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP--E-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~--~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+++...-.  . ..-...+...|+..++..+.++
T Consensus       484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~  518 (558)
T PRK10669        484 WLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYD  518 (558)
T ss_pred             EEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            776543322  1 1222334556777777765444

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.89  E-value=4.4  Score=36.20  Aligned_cols=95  Identities=15%  Similarity=0.060  Sum_probs=61.0

Q ss_pred             CeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCcc
Q psy14962         18 AKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D   92 (216)
                      .+|+-+|+|. |.........  .+..++.+|.+++.++.+++            ....++.+|..+...    .-+..|
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~~~~L~~agi~~A~  466 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK------------YGYKVYYGDATQLELLRAAGAEKAE  466 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh------------CCCeEEEeeCCCHHHHHhcCCccCC
Confidence            4677777776 5544333333  24589999999998887754            235688999864321    124678


Q ss_pred             EEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         93 AIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        93 ~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      .+++...-..   ......+.+.|...++....++..
T Consensus       467 ~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~  503 (601)
T PRK03659        467 AIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVE  503 (601)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence            8877655543   223445667888888887776643

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=85.85  E-value=4.8  Score=31.29  Aligned_cols=97  Identities=22%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~   84 (216)
                      .+.+|.+|+-.|+ |. |..+..+++..+  ..+++++.++.....+.+....         -..++..   +...   .
T Consensus       105 ~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  173 (293)
T cd05195         105 RLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGGP---------VDHIFSSRDLSFADGILR  173 (293)
T ss_pred             ccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCCC---------cceEeecCchhHHHHHHH
Confidence            4678999998864 33 777777888764  5888888777766665443100         0011111   1100   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++....-. ......+.++++|.++...
T Consensus       174 ~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g  209 (293)
T cd05195         174 ATGGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIG  209 (293)
T ss_pred             HhCCCCceEEEeCCCch-HHHHHHHhcccCceEEEee
Confidence            11234589998655544 6678889999999987643

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=85.84  E-value=10  Score=31.22  Aligned_cols=86  Identities=12%  Similarity=-0.035  Sum_probs=39.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh---------------CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe--EEEec
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV---------------GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL--HLRCR   79 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~---------------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~   79 (216)
                      .-+|+|+||.+|.-+..+...+               .|..+|+-.|.-..--...-+.+...........++  .-+.+
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg   96 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG   96 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred             ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence            3479999999998876665321               112477888865542211111111100000001233  22345


Q ss_pred             cCCCCCCCCCCccEEEecCCCCc
Q psy14962         80 DGRTGLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        80 d~~~~~~~~~~~D~i~~~~~~~~  102 (216)
                      .+.....+.++.|++++...++|
T Consensus        97 SFy~rLfP~~Svh~~~Ss~alHW  119 (334)
T PF03492_consen   97 SFYGRLFPSNSVHFGHSSYALHW  119 (334)
T ss_dssp             -TTS--S-TT-EEEEEEES-TTB
T ss_pred             hhhhccCCCCceEEEEEechhhh
Confidence            55566667889999998888765

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=85.28  E-value=9.3  Score=31.12  Aligned_cols=94  Identities=17%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ....+|+-+|||. |...........+..+|+..+.+++..+...+.+...+      .++.. ..+....   -...|+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g------~~~~~-~~~~~~a---v~~aDI  192 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG------FDAEV-VTDLEAA---VRQADI  192 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC------CceEE-eCCHHHH---HhcCCE
Confidence            4567899999988 55554333332334589999999887666555554321      12222 1221111   135899


Q ss_pred             EEecCCCCc-hHHHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPE-IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~-~~~~~~~~L~~gG~lv~~  120 (216)
                      |++..+... ++.  ...++||..+...
T Consensus       193 Vi~aT~s~~pvl~--~~~l~~g~~i~~i  218 (314)
T PRK06141        193 ISCATLSTEPLVR--GEWLKPGTHLDLV  218 (314)
T ss_pred             EEEeeCCCCCEec--HHHcCCCCEEEee
Confidence            977655432 111  2578898854443

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.21  E-value=7.1  Score=29.98  Aligned_cols=77  Identities=9%  Similarity=0.043  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      ++.++|-.|+ +|.++..+++.+. .+..|+.++.++..++.+.+.+...+      .++.++..|......        
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   76 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG------TEVRGYAANVTDEEDVEATFAQI   76 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence            4678888886 3444444444331 24589999998876665555544322      457777888643210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+.+|+|+....
T Consensus        77 ~~~~~~id~vi~~ag   91 (253)
T PRK08217         77 AEDFGQLNGLINNAG   91 (253)
T ss_pred             HHHcCCCCEEEECCC
Confidence              0145799887654

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=85.08  E-value=2.4  Score=27.96  Aligned_cols=73  Identities=8%  Similarity=-0.040  Sum_probs=44.5

Q ss_pred             EcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc
Q psy14962         23 IGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        23 iG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~  102 (216)
                      +.||+|..+..+++.                   .++.+.+.+      -.+++...+..........+|+|++..-+..
T Consensus         4 ~~Cg~G~sTS~~~~k-------------------i~~~~~~~~------~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~   58 (96)
T cd05564           4 LVCSAGMSTSILVKK-------------------MKKAAEKRG------IDAEIEAVPESELEEYIDDADVVLLGPQVRY   58 (96)
T ss_pred             EEcCCCchHHHHHHH-------------------HHHHHHHCC------CceEEEEecHHHHHHhcCCCCEEEEChhHHH
Confidence            568888776665554                   234444433      2355666554322222346899999999888


Q ss_pred             hHHHHHhcCCCCeEEEEe
Q psy14962        103 IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus       103 ~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+.+.+...+.+.=+..
T Consensus        59 ~~~~i~~~~~~~~~pv~~   76 (96)
T cd05564          59 MLDEVKKKAAEYGIPVAV   76 (96)
T ss_pred             HHHHHHHHhccCCCcEEE
Confidence            888888766555544333

In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=85.05  E-value=7.3  Score=31.23  Aligned_cols=92  Identities=20%  Similarity=0.162  Sum_probs=56.9

Q ss_pred             CCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCCCCc
Q psy14962         17 GAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQAPF   91 (216)
Q Consensus        17 ~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~   91 (216)
                      +.+|+-.|+ |. |..+..+++..+  .+|+.++.+++..+.+++.    +     .+.+ +...+..   ......+.+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~~-~~~~~~~~~~~~~~~~~~~  214 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKSL----G-----ASEV-LDREDLLDESKKPLLKARW  214 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----C-----CcEE-EcchhHHHHHHHHhcCCCc
Confidence            468888886 44 778888888864  4799999888777666432    1     1111 1111100   000112358


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|+....- .......+.++++|+++..-
T Consensus       215 d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g  243 (325)
T cd05280         215 AGAIDTVGG-DVLANLLKQTKYGGVVASCG  243 (325)
T ss_pred             cEEEECCch-HHHHHHHHhhcCCCEEEEEe
Confidence            988865443 45678889999999988654

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.03  E-value=11  Score=30.39  Aligned_cols=96  Identities=25%  Similarity=0.346  Sum_probs=56.6

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (216)
                      .+.++.+|+-.|+ |. |..+..+++..+  ..|++++. +...+.+++    .+     ...+.....+........+.
T Consensus       136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~----~g-----~~~~~~~~~~~~~~~~~~~~  203 (331)
T cd08273         136 KVLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE----LG-----ATPIDYRTKDWLPAMLTPGG  203 (331)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH----cC-----CeEEcCCCcchhhhhccCCC
Confidence            3678899999986 33 777777888754  58888875 655554432    11     01010000011100111245


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+++....-.. .....+.++++|.++..-
T Consensus       204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g  233 (331)
T cd08273         204 VDVVFDGVGGES-YEESYAALAPGGTLVCYG  233 (331)
T ss_pred             ceEEEECCchHH-HHHHHHHhcCCCEEEEEc
Confidence            899987655444 567788999999987653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=84.85  E-value=12  Score=30.13  Aligned_cols=95  Identities=16%  Similarity=0.187  Sum_probs=59.2

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G   84 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~   84 (216)
                      .+.++.+|+-.| +|. |..+..+++..+  .++++++.++...+.+++.    +     ..  .++..+-..      .
T Consensus       137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G--~~v~~~~~~~~~~~~~~~~----g-----~~--~~~~~~~~~~~~~~~~  203 (327)
T PRK10754        137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRAKKA----G-----AW--QVINYREENIVERVKE  203 (327)
T ss_pred             CCCCCCEEEEEeCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHC----C-----CC--EEEcCCCCcHHHHHHH
Confidence            467889998875 344 788888888864  5899999888876666331    1     11  122111110      1


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++....- .......+.++++|+++..-
T Consensus       204 ~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g  239 (327)
T PRK10754        204 ITGGKKVRVVYDSVGK-DTWEASLDCLQRRGLMVSFG  239 (327)
T ss_pred             HcCCCCeEEEEECCcH-HHHHHHHHHhccCCEEEEEc
Confidence            1123458988865432 34566788999999998754

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=84.65  E-value=12  Score=30.10  Aligned_cols=94  Identities=22%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--   85 (216)
                      .+.++.+|+-.|+ |. |..+..+++..+  .+++.++.+++..+.+++.    +     .+  .++..+-..   ..  
T Consensus       136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~--~v~~~~~~~~~~~~~~  202 (329)
T cd08250         136 EMKSGETVLVTAAAGGTGQFAVQLAKLAG--CHVIGTCSSDEKAEFLKSL----G-----CD--RPINYKTEDLGEVLKK  202 (329)
T ss_pred             CCCCCCEEEEEeCccHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHc----C-----Cc--eEEeCCCccHHHHHHH
Confidence            4678999998884 33 788888888864  5899988887776665431    1     11  111111100   00  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+..+|+++.... ......+.+.++++|.++..
T Consensus       203 ~~~~~vd~v~~~~g-~~~~~~~~~~l~~~g~~v~~  236 (329)
T cd08250         203 EYPKGVDVVYESVG-GEMFDTCVDNLALKGRLIVI  236 (329)
T ss_pred             hcCCCCeEEEECCc-HHHHHHHHHHhccCCeEEEE
Confidence            01235899987654 35667788899999998754

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.61  E-value=2.4  Score=33.78  Aligned_cols=98  Identities=17%  Similarity=0.073  Sum_probs=53.6

Q ss_pred             CeEEEEcCCC-c-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HhCC-CCC----CCCCeEEEeccCCC
Q psy14962         18 AKVLDIGSGS-G-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM-------RIRP-DLL----NDGRLHLRCRDGRT   83 (216)
Q Consensus        18 ~~vldiG~G~-G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~-------~~~~-~~~----~~~~~~~~~~d~~~   83 (216)
                      .+|.-+|+|. | .++..+++.   +.+|+++|.+++.++.+.+.+.       +.+. ...    ...++.+ ..|.. 
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-   78 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-   78 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-
Confidence            3688888887 3 344444443   4589999999999876554322       2110 000    0002221 12211 


Q ss_pred             CCCCCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEeecC
Q psy14962         84 GLLHQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                         .-...|+|+...+-     ..++..+.+.++++..+...+..
T Consensus        79 ---~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~  120 (282)
T PRK05808         79 ---DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS  120 (282)
T ss_pred             ---HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence               12347999887652     24566777888888777443333

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=84.31  E-value=14  Score=29.85  Aligned_cols=101  Identities=18%  Similarity=0.158  Sum_probs=54.1

Q ss_pred             CeEEEEcCCC-c-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         18 AKVLDIGSGS-G-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        18 ~~vldiG~G~-G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+|+-+|+|. | .++..+++.   +..|+.++.+++.++..++.   .|+................ .....+.||+|+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~~~~~~~D~vi   75 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TADAAEPIHRLL   75 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-CcccccccCEEE
Confidence            4799999998 4 455555554   34899999876655544331   1100000011111111110 111135799998


Q ss_pred             ecCCC---CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LSTYV---PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~---~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ..--.   ...++.+...+.++..++.....-.
T Consensus        76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~  108 (305)
T PRK05708         76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLG  108 (305)
T ss_pred             EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence            75443   3355677788888887766654443

>PRK07340 ornithine cyclodeaminase; Validated

Probab=84.31  E-value=14  Score=30.01  Aligned_cols=92  Identities=13%  Similarity=0.010  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ....+|+-+|||. |...........+..++...+.+++..+...+.+...        .+.+...+....   -...|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--------~~~~~~~~~~~a---v~~aDi  191 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--------GPTAEPLDGEAI---PEAVDL  191 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--------CCeeEECCHHHH---hhcCCE
Confidence            3567899999988 5555444433333347888999988766655555432        123332222211   135899


Q ss_pred             EEecCCCCc-hHHHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPE-IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~-~~~~~~~~L~~gG~lv~~  120 (216)
                      |++.-+... ++.   ..+|||-.+...
T Consensus       192 VitaT~s~~Pl~~---~~~~~g~hi~~i  216 (304)
T PRK07340        192 VVTATTSRTPVYP---EAARAGRLVVAV  216 (304)
T ss_pred             EEEccCCCCceeC---ccCCCCCEEEec
Confidence            998766544 222   246777655443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.22  E-value=6.4  Score=31.48  Aligned_cols=99  Identities=19%  Similarity=0.116  Sum_probs=53.1

Q ss_pred             CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh---CCCC--CC-------CCCeEEEeccCCC
Q psy14962         18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI---RPDL--LN-------DGRLHLRCRDGRT   83 (216)
Q Consensus        18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~---~~~~--~~-------~~~~~~~~~d~~~   83 (216)
                      .+|.-||+|. |. ++..+++.   +..|+..|.+++.++.+.+.....   +.+.  ..       ..++.+ ..+...
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~   77 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKA   77 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHH
Confidence            3678888876 33 33333333   458999999999988876543210   0000  00       011111 112111


Q ss_pred             CCCCCCCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEeecC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                         .-...|+|+...+-..     ++..+.+.++++..+.....+
T Consensus        78 ---~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         78 ---AVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST  119 (288)
T ss_pred             ---hhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence               1134799997766542     345667788888766554433

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=84.13  E-value=2.3  Score=34.66  Aligned_cols=66  Identities=15%  Similarity=0.028  Sum_probs=42.1

Q ss_pred             EEEEcCCCchHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEEEec
Q psy14962         20 VLDIGSGSGFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAIYLS   97 (216)
Q Consensus        20 vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~~~   97 (216)
                      |+|+.||.|.++.-+.+.   +.+ +.++|+++...+.-+.+..          . .+..+|...... .-..+|+++..
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~----------~-~~~~~Di~~~~~~~~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG----------N-KVPFGDITKISPSDIPDFDILLGG   66 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC----------C-CCCccChhhhhhhhCCCcCEEEec
Confidence            689999999999887655   345 5679999987766655432          1 234455543221 11347888766


Q ss_pred             CC
Q psy14962         98 TY   99 (216)
Q Consensus        98 ~~   99 (216)
                      .+
T Consensus        67 ~P   68 (315)
T TIGR00675        67 FP   68 (315)
T ss_pred             CC
Confidence            55

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=84.09  E-value=2.9  Score=32.71  Aligned_cols=54  Identities=15%  Similarity=0.029  Sum_probs=34.5

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET   60 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~   60 (216)
                      ++..|.+.+...  +..+++|.-||+|.++..+...   ...|+.-|+++......+..
T Consensus         8 l~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~~~   61 (260)
T PF02086_consen    8 LAKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWKAV   61 (260)
T ss_dssp             GHHHHHHHS-S---S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCC--CCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHHHH
Confidence            344555555311  6889999999999998877653   45899999999877666533

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK10637 cysG siroheme synthase; Provisional

Probab=84.08  E-value=11  Score=32.58  Aligned_cols=94  Identities=14%  Similarity=-0.049  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCCchHH-HHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMS-CVFAELVGKTGRVFGV--EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~-~~l~~~~~~~~~v~~~--D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+||-+|+|.-..- ......  .+++|+.+  +++++..+.+.            ..++.++..+......  ..++
T Consensus        11 ~~~~vlvvGgG~vA~rk~~~ll~--~ga~v~visp~~~~~~~~l~~------------~~~i~~~~~~~~~~dl--~~~~   74 (457)
T PRK10637         11 RDRDCLLVGGGDVAERKARLLLD--AGARLTVNALAFIPQFTAWAD------------AGMLTLVEGPFDESLL--DTCW   74 (457)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHh------------CCCEEEEeCCCChHHh--CCCE
Confidence            5789999999883322 222222  24466555  66666543322            1567887776654333  3478


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|++...-+.+-.++.+..+..|.++-.+..+.
T Consensus        75 lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~  107 (457)
T PRK10637         75 LAIAATDDDAVNQRVSEAAEARRIFCNVVDAPK  107 (457)
T ss_pred             EEEECCCCHHHhHHHHHHHHHcCcEEEECCCcc
Confidence            888887777777888888888888877766654

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.02  E-value=4.5  Score=33.98  Aligned_cols=46  Identities=17%  Similarity=0.013  Sum_probs=33.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV   61 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (216)
                      .+.++++||-|.+|.......++..  | .+|+++|++|......+=+.
T Consensus        32 ~i~~~d~vl~ItSaG~N~L~yL~~~--P-~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNALDYLLAG--P-KRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCCeEEEEccCCchHHHHHhcC--C-ceEEEEeCCHHHHHHHHHHH
Confidence            4789999999987766665555543  3 49999999999876555443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG1209|consensus

Probab=83.50  E-value=10  Score=29.26  Aligned_cols=74  Identities=19%  Similarity=0.079  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMRE-QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      .....||-.||..|.++.++++.+. .+..|+++-.+-+ |-+.+.+            ..+.....|+.+..       
T Consensus         5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~------------~gl~~~kLDV~~~~~V~~v~~   72 (289)
T KOG1209|consen    5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ------------FGLKPYKLDVSKPEEVVTVSG   72 (289)
T ss_pred             cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh------------hCCeeEEeccCChHHHHHHHH
Confidence            3467899999999999999988774 3568888854443 3333322            12445555543211       


Q ss_pred             ----CCCCCccEEEecCCC
Q psy14962         86 ----LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~~  100 (216)
                          .+.++.|+.+.+.+.
T Consensus        73 evr~~~~Gkld~L~NNAG~   91 (289)
T KOG1209|consen   73 EVRANPDGKLDLLYNNAGQ   91 (289)
T ss_pred             HHhhCCCCceEEEEcCCCC
Confidence                245778888766653

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=83.49  E-value=10  Score=26.88  Aligned_cols=73  Identities=22%  Similarity=0.165  Sum_probs=39.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGK--TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      .+.+|+-+|+|.  .+..+++.+..  ...++.+|.+++..+...+.+..        ..+.....+....   -..+|+
T Consensus        18 ~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~Dv   84 (155)
T cd01065          18 KGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE--------LGIAIAYLDLEEL---LAEADL   84 (155)
T ss_pred             CCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh--------cccceeecchhhc---cccCCE
Confidence            467899999864  44444433211  24789999988766554443322        1011122222111   245899


Q ss_pred             EEecCCCC
Q psy14962         94 IYLSTYVP  101 (216)
Q Consensus        94 i~~~~~~~  101 (216)
                      |++..+..
T Consensus        85 vi~~~~~~   92 (155)
T cd01065          85 IINTTPVG   92 (155)
T ss_pred             EEeCcCCC
Confidence            98876654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=83.25  E-value=18  Score=27.45  Aligned_cols=94  Identities=11%  Similarity=0.074  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+.+||-+|+|. |......+..  .+++|+.++...  .....+....        ..+.+.........  -..+|+|
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~--~~~l~~l~~~--------~~i~~~~~~~~~~~--l~~adlV   74 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL--TENLVKLVEE--------GKIRWKQKEFEPSD--IVDAFLV   74 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC--CHHHHHHHhC--------CCEEEEecCCChhh--cCCceEE
Confidence            578999999977 4433322222  245788775432  1112222221        34555443332222  2358999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++...-+.+-..+.+..+.+ .++-.+..+
T Consensus        75 iaaT~d~elN~~i~~~a~~~-~lvn~~d~~  103 (202)
T PRK06718         75 IAATNDPRVNEQVKEDLPEN-ALFNVITDA  103 (202)
T ss_pred             EEcCCCHHHHHHHHHHHHhC-CcEEECCCC
Confidence            98877766655666555444 455444444

>PRK07478 short chain dehydrogenase; Provisional

Probab=83.22  E-value=10  Score=29.26  Aligned_cols=78  Identities=12%  Similarity=0.075  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++ |.++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|......        
T Consensus         5 ~~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   77 (254)
T PRK07478          5 NGKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG------GEAVALAGDVRDEAYAKALVALA   77 (254)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHH
Confidence            35678877765 444444444332 25689999988877766655554422      457778888753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        78 ~~~~~~id~li~~ag~   93 (254)
T PRK07478         78 VERFGGLDIAFNNAGT   93 (254)
T ss_pred             HHhcCCCCEEEECCCC
Confidence              12468999877653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.06  E-value=7.1  Score=27.41  Aligned_cols=76  Identities=17%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+.+|+-+|+|- |......+...+. .+++.+..+.+..+...+.+..        .++.+...+-..  .....+|+|
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~--------~~~~~~~~~~~~--~~~~~~Div   79 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG--------VNIEAIPLEDLE--EALQEADIV   79 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG--------CSEEEEEGGGHC--HHHHTESEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc--------cccceeeHHHHH--HHHhhCCeE
Confidence            588999999966 4444444444332 3699999887765544444421        445555544221  112469999


Q ss_pred             EecCCCCc
Q psy14962         95 YLSTYVPE  102 (216)
Q Consensus        95 ~~~~~~~~  102 (216)
                      +...+...
T Consensus        80 I~aT~~~~   87 (135)
T PF01488_consen   80 INATPSGM   87 (135)
T ss_dssp             EE-SSTTS
T ss_pred             EEecCCCC
Confidence            98877654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=82.97  E-value=12  Score=31.49  Aligned_cols=90  Identities=12%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHH-HHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQC-EDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      .|+-++=..|.+++.++.. ++    +.+ .++-.. ...++++..++.   ....+++.  +....+  .+.+|+|+.-
T Consensus        47 ~~~i~nd~fGal~~~l~~~-~~----~~~-~ds~~~~~~~~~n~~~n~~---~~~~~~~~--~~~~~~--~~~~d~vl~~  113 (378)
T PRK15001         47 PVLILNDAFGALSCALAEH-KP----YSI-GDSYISELATRENLRLNGI---DESSVKFL--DSTADY--PQQPGVVLIK  113 (378)
T ss_pred             CEEEEcCchhHHHHHHHhC-CC----Cee-ehHHHHHHHHHHHHHHcCC---Ccccceee--cccccc--cCCCCEEEEE
Confidence            8999999999999999854 33    222 123222 234456666552   11223333  322222  2348999887


Q ss_pred             CCC-----CchHHHHHhcCCCCeEEEEee
Q psy14962         98 TYV-----PEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        98 ~~~-----~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+-     ++.+..+.++|.||+.+++..
T Consensus       114 ~PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        114 VPKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             eCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence            663     446688889999999987543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=82.75  E-value=4.9  Score=29.83  Aligned_cols=98  Identities=19%  Similarity=0.117  Sum_probs=52.1

Q ss_pred             eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------hCCCC-----CCCCCeEEEeccCCCC
Q psy14962         19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-------IRPDL-----LNDGRLHLRCRDGRTG   84 (216)
Q Consensus        19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~~~-----~~~~~~~~~~~d~~~~   84 (216)
                      +|.-+|+|+ |. ++..++..   +.+|+..|.+++.++.+++.+.+       .+...     ....++.+ ..|... 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-   75 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-   75 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG-
T ss_pred             CEEEEcCCHHHHHHHHHHHhC---CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH-
Confidence            467889988 53 33333433   56999999999999888776553       11000     00012321 222211 


Q ss_pred             CCCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                         -...|+|+...+-.     .++.++.+.+.|+..|.-.+.+.
T Consensus        76 ---~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl  117 (180)
T PF02737_consen   76 ---AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL  117 (180)
T ss_dssp             ---GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred             ---HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence               12479998876532     25677778888888876654433

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06139 short chain dehydrogenase; Provisional

Probab=82.74  E-value=8.8  Score=31.46  Aligned_cols=78  Identities=17%  Similarity=0.059  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.+||-.|++. .++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.+...        
T Consensus         6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~~   78 (330)
T PRK06139          6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDADQVKALATQA   78 (330)
T ss_pred             CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence            456788887754 4444444333 135689999999888777666655433      456777788753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        79 ~~~~g~iD~lVnnAG~   94 (330)
T PRK06139         79 ASFGGRIDVWVNNVGV   94 (330)
T ss_pred             HHhcCCCCEEEECCCc
Confidence              11568999887663

>KOG0821|consensus

Probab=82.45  E-value=3.1  Score=32.08  Aligned_cols=59  Identities=20%  Similarity=0.183  Sum_probs=39.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ..+-|++||.|+|.++..+....  ..+...+|.++..+.-.+-.... .     +.+..+.+.|+.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EA-a-----~~~~~IHh~D~L  108 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEA-A-----PGKLRIHHGDVL  108 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhc-C-----CcceEEeccccc
Confidence            45689999999999999988762  23777888887765544332221 1     345666666653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=82.38  E-value=13  Score=29.76  Aligned_cols=97  Identities=18%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|+-+|+|. |. ++..+++.   +.+|+.++.+++.++..++.    +.. ....... ..............+|+|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~~----g~~-~~~~~~~-~~~~~~~~~~~~~~~d~vil   72 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA---GHDVTLVARRGAHLDALNEN----GLR-LEDGEIT-VPVLAADDPAELGPQDLVIL   72 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC---CCeEEEEECChHHHHHHHHc----CCc-ccCCcee-ecccCCCChhHcCCCCEEEE
Confidence            578899887 43 33333332   45899999877665544432    210 0000110 00000111111256899988


Q ss_pred             cCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         97 STYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        97 ~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .-....   ++..+...+.++..++......
T Consensus        73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~  103 (304)
T PRK06522         73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGV  103 (304)
T ss_pred             ecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            766433   4566667777776666544443

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=82.36  E-value=20  Score=27.91  Aligned_cols=79  Identities=9%  Similarity=-0.028  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--------   85 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------   85 (216)
                      .+++++-.|+++ +.++..+++.+. .+++|+.++.+....+..++.....     ...++.++..|+.+..        
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~   80 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL-----EGQESLLLPCDVTSDEEITACFET   80 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc-----CCCceEEEecCCCCHHHHHHHHHH
Confidence            477899999873 666666666553 3568888765432222222222221     0245677788875321        


Q ss_pred             --CCCCCccEEEecCC
Q psy14962         86 --LHQAPFDAIYLSTY   99 (216)
Q Consensus        86 --~~~~~~D~i~~~~~   99 (216)
                        ...+++|+++.+..
T Consensus        81 ~~~~~g~ld~lv~nag   96 (257)
T PRK08594         81 IKEEVGVIHGVAHCIA   96 (257)
T ss_pred             HHHhCCCccEEEECcc
Confidence              01256898876543

>PRK06701 short chain dehydrogenase; Provisional

Probab=82.34  E-value=15  Score=29.23  Aligned_cols=76  Identities=13%  Similarity=0.037  Sum_probs=41.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMRE-QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      +.++|-.|++ |.++..+++.+. .+.+|+.++.++. ..+.....+...      ..++.++..|+.....        
T Consensus        46 ~k~iLItGas-ggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         46 GKVALITGGD-SGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE------GVKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence            5678888764 444555544432 2568888877642 233333333322      2467788888753210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+.+|+++.+..
T Consensus       119 ~~~~~~iD~lI~~Ag  133 (290)
T PRK06701        119 VRELGRLDILVNNAA  133 (290)
T ss_pred             HHHcCCCCEEEECCc
Confidence              0135788886554

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=82.34  E-value=17  Score=29.29  Aligned_cols=92  Identities=18%  Similarity=0.093  Sum_probs=57.1

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-c-cCCCC--CCCCCC
Q psy14962         17 GAKVLDIGS--GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-R-DGRTG--LLHQAP   90 (216)
Q Consensus        17 ~~~vldiG~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-d~~~~--~~~~~~   90 (216)
                      +.+||-.|+  +.|..+..+++... +.+|+++..+++..+.+++.    +     .+.  ++. . +....  ....+.
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~~----g-----~~~--~~~~~~~~~~~i~~~~~~~  216 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLEL----G-----AHH--VIDHSKPLKAQLEKLGLEA  216 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHc----C-----CCE--EEECCCCHHHHHHHhcCCC
Confidence            889998885  33778788888751 35899998777766666431    1     111  121 1 11000  012346


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|+|+....-........++|+++|+++..
T Consensus       217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~  246 (336)
T TIGR02817       217 VSYVFSLTHTDQHFKEIVELLAPQGRFALI  246 (336)
T ss_pred             CCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence            899986443445667888999999999864

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=82.23  E-value=11  Score=29.37  Aligned_cols=78  Identities=12%  Similarity=0.031  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.+++-.|++.| ++..+++.+ ..+.+|+.++.+++.++.....+...+      .++.++..|......        
T Consensus         9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~   81 (265)
T PRK07097          9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTDEDGVQAMVSQI   81 (265)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHHH
Confidence            4677888887654 333333322 225689988988877766655554422      467788888753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        82 ~~~~~~id~li~~ag~   97 (265)
T PRK07097         82 EKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHhCCCCCEEEECCCC
Confidence              11468999877664

>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria

Probab=82.13  E-value=3.2  Score=27.66  Aligned_cols=50  Identities=8%  Similarity=-0.039  Sum_probs=34.3

Q ss_pred             CeEEEeccCCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         73 RLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        73 ~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++.+..............+|+|+..+...+.++.+.+.+.+-|.-+....
T Consensus        30 ~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~   79 (99)
T cd05565          30 PLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT   79 (99)
T ss_pred             cEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence            35555444332222234589999999999999999999998887665444

In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.

>KOG2782|consensus

Probab=82.08  E-value=2.5  Score=32.52  Aligned_cols=57  Identities=11%  Similarity=0.112  Sum_probs=46.3

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV   61 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~   61 (216)
                      |...+++.+.  ..+|...+|.--|.|..+..+.++. +..+++++|.+|-..+.|....
T Consensus        31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s   87 (303)
T KOG2782|consen   31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS   87 (303)
T ss_pred             ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence            5566777776  3678999999999999998888874 5678999999998888777554

>PRK06125 short chain dehydrogenase; Provisional

Probab=81.70  E-value=15  Score=28.57  Aligned_cols=78  Identities=13%  Similarity=0.054  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ   88 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~   88 (216)
                      .+.+++-.|++. .++..+++.+. .+++|++++.+++..+...+.+....     ..++.++..|+....      ...
T Consensus         6 ~~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   79 (259)
T PRK06125          6 AGKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAEA   79 (259)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHh
Confidence            367888888644 44444443331 25699999998887766655554321     245777888875321      012


Q ss_pred             CCccEEEecCC
Q psy14962         89 APFDAIYLSTY   99 (216)
Q Consensus        89 ~~~D~i~~~~~   99 (216)
                      +..|+++.+..
T Consensus        80 g~id~lv~~ag   90 (259)
T PRK06125         80 GDIDILVNNAG   90 (259)
T ss_pred             CCCCEEEECCC
Confidence            56899887655

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=81.48  E-value=9.4  Score=28.85  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-----
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAEL---VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-----   87 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----   87 (216)
                      +...|+|+|.-.|..++.+|..   .|...+|+++|++-..+.-+...          .+++.++.++.......     
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i~f~egss~dpai~eqi~~  138 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDILFIEGSSTDPAIAEQIRR  138 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCeEEEeCCCCCHHHHHHHHH
Confidence            3568999999988877666543   33336999999887765443322          26799999987543211     


Q ss_pred             -CCCccEEEecCCCC----chH---HHHHhcCCCCeEEEEeecCC
Q psy14962         88 -QAPFDAIYLSTYVP----EIP---YSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        88 -~~~~D~i~~~~~~~----~~~---~~~~~~L~~gG~lv~~~~~~  124 (216)
                       .+.+--|++.....    +.+   +....+|.-|-++++-...-
T Consensus       139 ~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v  183 (237)
T COG3510         139 LKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV  183 (237)
T ss_pred             HhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence             12333444433322    233   44456788899988854433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=81.33  E-value=33  Score=29.23  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=58.6

Q ss_pred             HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ...+........+++-+|+|.  .+..+++.+. .+..++.+|.+++.++..++..          ..+.++.+|.....
T Consensus       221 ~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~gd~~~~~  288 (453)
T PRK09496        221 MSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHGDGTDQE  288 (453)
T ss_pred             HHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEECCCCCHH
Confidence            333333333457888888855  4444444432 2458999999999877665532          34678888875321


Q ss_pred             ----CCCCCccEEEecCCCCc--h-HHHHHhcCCCCeEEEEeecCC
Q psy14962         86 ----LHQAPFDAIYLSTYVPE--I-PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~~~~--~-~~~~~~~L~~gG~lv~~~~~~  124 (216)
                          ..-..+|.|++...-..  . ...+.+.+.+. .++..+.++
T Consensus       289 ~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~~  333 (453)
T PRK09496        289 LLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK-KVIALVNRP  333 (453)
T ss_pred             HHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECCc
Confidence                11246788877554322  1 12333444443 445444444

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=81.30  E-value=18  Score=30.49  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE   59 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (216)
                      +|.-+|.|.  ++..++..+..+.+|+++|.+++.++..++
T Consensus         2 kI~VIGlGy--vGl~~A~~lA~G~~VigvD~d~~kv~~l~~   40 (388)
T PRK15057          2 KITISGTGY--VGLSNGLLIAQNHEVVALDILPSRVAMLND   40 (388)
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence            355566654  333333322224689999999999887765

>PRK05599 hypothetical protein; Provisional

Probab=80.95  E-value=14  Score=28.52  Aligned_cols=76  Identities=12%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----------CC
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----------HQ   88 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~   88 (216)
                      +++-.|++. .++..+++.+..+.+|+.++.+++.++...+.+...+     ..++.++..|+.+...          ..
T Consensus         2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   75 (246)
T PRK05599          2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-----ATSVHVLSFDAQDLDTHRELVKQTQELA   75 (246)
T ss_pred             eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence            467677654 4566666655556789888888887776666555422     2346677788653210          12


Q ss_pred             CCccEEEecCCC
Q psy14962         89 APFDAIYLSTYV  100 (216)
Q Consensus        89 ~~~D~i~~~~~~  100 (216)
                      +..|+++.+.+.
T Consensus        76 g~id~lv~nag~   87 (246)
T PRK05599         76 GEISLAVVAFGI   87 (246)
T ss_pred             CCCCEEEEecCc
Confidence            568988876553

>KOG1201|consensus

Probab=80.82  E-value=13  Score=30.00  Aligned_cols=75  Identities=19%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCCch---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGF---MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~---~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      .|..||--|+|+|.   ++.++|++   ++.+...|++++......+..++.       .++.....|..+..       
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~-------g~~~~y~cdis~~eei~~~a~  106 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKI-------GEAKAYTCDISDREEIYRLAK  106 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhc-------CceeEEEecCCCHHHHHHHHH
Confidence            57889999999974   55666766   458888899998887777776653       26788888875321       


Q ss_pred             ---CCCCCccEEEecCCC
Q psy14962         86 ---LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~  100 (216)
                         ..-+..|+++.+++.
T Consensus       107 ~Vk~e~G~V~ILVNNAGI  124 (300)
T KOG1201|consen  107 KVKKEVGDVDILVNNAGI  124 (300)
T ss_pred             HHHHhcCCceEEEecccc
Confidence               112678999988775

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=80.72  E-value=18  Score=29.29  Aligned_cols=93  Identities=19%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHHhCCCCCCCCCeEEEecc------
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMR----EQCEDAWETVMRIRPDLLNDGRLHLRCRD------   80 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~d------   80 (216)
                      .+.++.+||-.|+ |. |..+..+++..+  ..++.+..++    +..+.++    +.+     ...  ++...      
T Consensus       143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~----~~g-----~~~--~~~~~~~~~~~  209 (341)
T cd08290         143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLK----ALG-----ADH--VLTEEELRSLL  209 (341)
T ss_pred             ccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHH----hcC-----CCE--EEeCccccccc
Confidence            4578999999886 33 788888888865  4666654343    2333332    211     111  11111      


Q ss_pred             CCC---CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         81 GRT---GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        81 ~~~---~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...   ..... .+|+|+....-. ......+.|+++|.++..
T Consensus       210 ~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~  250 (341)
T cd08290         210 ATELLKSAPGG-RPKLALNCVGGK-SATELARLLSPGGTMVTY  250 (341)
T ss_pred             HHHHHHHHcCC-CceEEEECcCcH-hHHHHHHHhCCCCEEEEE
Confidence            000   01112 589998765544 345677899999998864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.60  E-value=28  Score=27.88  Aligned_cols=98  Identities=20%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-------CCCCC-----CCCCeEEEeccCCC
Q psy14962         18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-------RPDLL-----NDGRLHLRCRDGRT   83 (216)
Q Consensus        18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-------~~~~~-----~~~~~~~~~~d~~~   83 (216)
                      .+|.-+|+|. |. ++..++..   +..|+..|.+++.++.+.+.....       +....     ...++.+ ..|.. 
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-   79 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE-   79 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH-
Confidence            5788899987 33 33333333   458999999999887765433221       10000     0011221 11211 


Q ss_pred             CCCCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecC
Q psy14962         84 GLLHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                         .-...|+|+...+-.     .++..+...++++..++..+.+
T Consensus        80 ---~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~  121 (292)
T PRK07530         80 ---DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSS  121 (292)
T ss_pred             ---HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence               113579999876542     3456777888888877644433

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=80.54  E-value=8.6  Score=30.65  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=45.4

Q ss_pred             eEEEEcCCC-c-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-G-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|.-+|+|. | .++..+.+.   +.+|+++|.+++.++.+.+.    +       .+.....+.  .  .-...|+|+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~----g-------~~~~~~~~~--~--~~~~aDlVil   63 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----G-------LVDEASTDL--S--LLKDCDLVIL   63 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----C-------CcccccCCH--h--HhcCCCEEEE
Confidence            466788766 3 333444333   45899999999877666532    1       111111111  1  1134799998


Q ss_pred             cCCCCc---hHHHHHhcCCCCeEE
Q psy14962         97 STYVPE---IPYSILLQLKPGGRL  117 (216)
Q Consensus        97 ~~~~~~---~~~~~~~~L~~gG~l  117 (216)
                      ..+...   ..+.+...++++..+
T Consensus        64 avp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         64 ALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcEE
Confidence            877644   345566666666444

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=80.53  E-value=7.8  Score=31.11  Aligned_cols=96  Identities=24%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--C---CC
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--T---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~   85 (216)
                      .+.++.+|+-.|++.  |.....+++..  +.+++.++.++...+.+...    +      ....+...+..  .   ..
T Consensus       163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~  230 (342)
T cd08266         163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKEL----G------ADYVIDYRKEDFVREVREL  230 (342)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C------CCeEEecCChHHHHHHHHH
Confidence            356788999998864  66666667664  45899998888766655321    1      11111111100  0   00


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+++...+.. ....+.+.++++|.++...
T Consensus       231 ~~~~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v~~~  265 (342)
T cd08266         231 TGKRGVDVVVEHVGAA-TWEKSLKSLARGGRLVTCG  265 (342)
T ss_pred             hCCCCCcEEEECCcHH-HHHHHHHHhhcCCEEEEEe
Confidence            1124589998766543 4567778899999987754

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=80.48  E-value=19  Score=27.64  Aligned_cols=79  Identities=11%  Similarity=0.021  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--------   85 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------   85 (216)
                      .++.+|+-.|+ +|.++..+++.+. .+.+|++++.++...+...+.+...+     ..++.++..|+....        
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~d~~~~~~~~~~~~~   83 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-----GPQPAIIPLDLLTATPQNYQQLA   83 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCCceEEEecccCCCHHHHHHHH
Confidence            46778888885 5566665555442 24599999998876665555554422     245667777764211        


Q ss_pred             ----CCCCCccEEEecCC
Q psy14962         86 ----LHQAPFDAIYLSTY   99 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~   99 (216)
                          ...++.|.++.+..
T Consensus        84 ~~~~~~~~~id~vi~~Ag  101 (247)
T PRK08945         84 DTIEEQFGRLDGVLHNAG  101 (247)
T ss_pred             HHHHHHhCCCCEEEECCc
Confidence                01146899987654

>PRK08589 short chain dehydrogenase; Validated

Probab=80.47  E-value=13  Score=29.14  Aligned_cols=77  Identities=14%  Similarity=0.150  Sum_probs=44.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++.| ++..+++.+. .+.+|+.++.+ +.++...+.+...+      .++.++..|+.....        
T Consensus         5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~   76 (272)
T PRK08589          5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG------GKAKAYHVDISDEQQVKDFASEI   76 (272)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHH
Confidence            4667888877554 4444444332 35699999988 44444444443322      457778888753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        77 ~~~~g~id~li~~Ag~   92 (272)
T PRK08589         77 KEQFGRVDVLFNNAGV   92 (272)
T ss_pred             HHHcCCcCEEEECCCC
Confidence              11468998876653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=80.09  E-value=18  Score=27.92  Aligned_cols=77  Identities=16%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      ++.+++-.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++.+|......        
T Consensus        10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~   82 (256)
T PRK06124         10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADEEAVAAAFARI   82 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHH
Confidence            5778888886 444555554443 235699999998877666555554422      457788888753210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+++|.++.+..
T Consensus        83 ~~~~~~id~vi~~ag   97 (256)
T PRK06124         83 DAEHGRLDILVNNVG   97 (256)
T ss_pred             HHhcCCCCEEEECCC
Confidence              1146788887655

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=80.07  E-value=6.2  Score=31.59  Aligned_cols=93  Identities=19%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCC--CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CC---CCC
Q psy14962         14 IQEGAKVLDIGSG--SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GR---TGL   85 (216)
Q Consensus        14 ~~~~~~vldiG~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~---~~~   85 (216)
                      +.++.+||-.|++  .|..+..+++..+  .+++++..++...+.+++.    +     .+.  ++...   ..   ...
T Consensus       136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g-----~~~--~~~~~~~~~~~~~~~~  202 (323)
T cd05282         136 LPPGDWVIQNAANSAVGRMLIQLAKLLG--FKTINVVRRDEQVEELKAL----G-----ADE--VIDSSPEDLAQRVKEA  202 (323)
T ss_pred             CCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecChHHHHHHHhc----C-----CCE--EecccchhHHHHHHHH
Confidence            5678999988873  3788888888864  5888887777666555321    1     111  11111   00   011


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+|+....-.. .....+.|+++|+++..
T Consensus       203 ~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~  236 (323)
T cd05282         203 TGGAGARLALDAVGGES-ATRLARSLRPGGTLVNY  236 (323)
T ss_pred             hcCCCceEEEECCCCHH-HHHHHHhhCCCCEEEEE
Confidence            12346899997665443 45667899999998764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		6e-29
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		3e-15
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		8e-13
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		2e-12
3lbf_A	210	Crystal Structure Of Protein L-Isoaspartyl Methyltr		1e-11
1jg4_A	235	Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-		5e-11
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		6e-06
3dh0_A	219	Crystal Structure Of A Sam Dependent Methyltransfer		1e-05
1o54_A	277	Crystal Structure Of Sam-Dependent O-Methyltransfer		2e-04
1vbf_A	231	Crystal Structure Of Protein L-Isoaspartate O-Methy		5e-04

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V 
Sbjct: 64  HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR 123
Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG
Sbjct: 124 KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG 183
Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
            +     +   D+ +DG+   K  + +     PL + ++Q   W
Sbjct: 184 PAGGNQMLEQYDKLQDGSIKMKPLMGV--IYVPLTDKEKQWSRW 225

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-----RVFGVEHMREQCEDA 57
            A  +E L   ++ GA++LD+GSGSG+++  F   +   G     R+ G+EH  E    +
Sbjct: 71  HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130
Query: 58  WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRL 117
              +      +L+ G+L +   DGR G    AP++AI++    P+ P  ++ QL  GGRL
Sbjct: 131 KANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRL 190
Query: 118 VCGVGKSKSYHRMTVIDRSEDG 139
           +  VG       M   D+  +G
Sbjct: 191 IVPVGPDGGSQYMQQYDKDANG 212

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           + +G +VL+IG G+G+ + V + +VG+ G V  VE+ R+ CE A   V R     L    
Sbjct: 73  LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIEN 127
Query: 74  LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVI 133
           +   C DG  G+   +P+D I+++  V E+P +   QLK GGR++  +    S  +   +
Sbjct: 128 VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFL 187
Query: 134 DRSEDGTHFQKYEI 147
            + +D      Y++
Sbjct: 188 FKKKDPYLVGNYKL 201

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
           ELL+  ++ G KVL+IG+G G+ + V AE+VG+ G V  +E + E  E A  T+ ++  D
Sbjct: 71  ELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD 128
Query: 68  LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
                 + +   DG  G    AP+D IY +   P+IP  ++ QLK GG+L+  VG+
Sbjct: 129 -----NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179

>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 12/125 (9%)
Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           AR+ ELLE   Q  ++VL+IG+GSG+ + + A LV     V  ++ ++      W+   R
Sbjct: 67  ARMTELLELTPQ--SRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQ------WQARRR 118
Query: 64  IRP-DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           ++  DL N   +  R  DG  G   +APFDAI ++   PEIP +++ QL  GG LV  VG
Sbjct: 119 LKNLDLHN---VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG 175
Query: 123 KSKSY 127
           +   Y
Sbjct: 176 EEHQY 180

>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           ++ G  +L++G+GSG+ + + +E+V KT  V+ +E + E  E A   + R          
Sbjct: 89  LKPGMNILEVGTGSGWNAALISEIV-KT-DVYTIERIPELVEFAKRNLER-----AGVKN 141
Query: 74  LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVI 133
           +H+   DG  G   +AP+D I ++   P+IP  ++ QLK GG+L+  VG    +  +  +
Sbjct: 142 VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEV 201
Query: 134 DRSEDGTHFQKY 145
            +++DG   + +
Sbjct: 202 RKTKDGIKIKNH 213

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 22/134 (16%)
Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFA----ELVGKTGRVFGVEHMREQCED 56
           +   R+I +L+P    G++ +D+GSGSG+++   A     L  K   V G+E +++    
Sbjct: 69  LSLKRLINVLKP----GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNF 124
Query: 57  AWETVMRIRPDLLNDGRLHLRCRD---------GRTGLLHQAPFDAIYLSTYVPEIPYSI 107
           + E + R +P+LL      +  ++            GL     FDAI++     E+P  +
Sbjct: 125 SLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGL-----FDAIHVGASASELPEIL 179
Query: 108 LLQLKPGGRLVCGV 121
           +  L   G+L+  +
Sbjct: 180 VDLLAENGKLIIPI 193

>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 7  IELLEPK-------IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
          +EL +P+       ++EG  VLD+G+G+GF     +++VG+ G+V+ ++   E    AWE
Sbjct: 21 LELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80
Query: 60 TVMRI 64
           V ++
Sbjct: 81 KVNKL 85

>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase (Tm0748) From Thermotoga Maritima At 1.65 A Resolution Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           ++EG +++D G GSG M  V A  VG +G+VF  E   E  + A   + +    L+   R
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIE--R 165
Query: 74  LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRL--VC 119
           + ++ RD   G   +   DA++L   VP+ P++ + +    LK GGR   VC
Sbjct: 166 VTIKVRDISEG-FDEKDVDALFLD--VPD-PWNYIDKCWEALKGGGRFATVC 213

>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-Methyltransferase Homologue From Sulfolobus Tokodaii Length = 231

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           I  L E  + +G KVL+IG+G G+ + + AE+V K   V       E  E  +    ++ 
Sbjct: 60  IFXLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSV-------EINEKXYNYASKLL 112
Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEI---PYSILLQLKPGGRLV--CG 120
               N   + L   DG  G   + P+D + +    P +   PY    QLK GG  +   G
Sbjct: 113 SYYNN---IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYE---QLKEGGIXILPIG 166
Query: 121 VGKSKSYHRM 130
           VG+ +  +++
Sbjct: 167 VGRVQKLYKV 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	3e-50
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	6e-46
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	1e-41
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	1e-40
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	9e-40
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	3e-37
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	1e-35
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	3e-35
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	3e-14
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	9e-14
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	9e-13
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-12
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	5e-12
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	9e-12
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-11
2b25_A	336	Hypothetical protein; structural genomics, methyl	2e-11
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-10
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-10
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	3e-10
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	4e-10
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-10
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-10
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	9e-10
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	9e-10
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-09
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-09
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	6e-09
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-08
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	1e-08
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-08
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	6e-08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-08
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	1e-07
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-07
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-07
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-07
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-07
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	3e-07
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	4e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	7e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-06
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	1e-06
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-06
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	3e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	3e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	4e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-06
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	5e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	7e-06
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	7e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	8e-06
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	9e-06
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	1e-05
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	1e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-05
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	2e-05
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	4e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	5e-05
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	8e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	8e-05
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-04
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	2e-04
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-04
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	3e-04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	4e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	5e-04
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	5e-04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	6e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	8e-04

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score =  161 bits (411), Expect = 3e-50
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   V +
Sbjct: 65  AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
             P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  VG 
Sbjct: 125 DDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGP 184

Query: 124 SKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
           +     +   D+ +DG+  +   +    ++ PL + ++Q   W
Sbjct: 185 AGGNQMLEQYDKLQDGS-IKMKPLMGVIYV-PLTDKEKQWSRW 225

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score =  150 bits (382), Expect = 6e-46
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-----RVFGVEHMREQCEDAW 58
           A  +E L   ++ GA++LD+GSGSG+++  F   +   G     R+ G+EH  E    + 
Sbjct: 72  AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 131

Query: 59  ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
             +      +L+ G+L +   DGR G    AP++AI++    P+ P  ++ QL  GGRL+
Sbjct: 132 ANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLI 191

Query: 119 CGVGKSKSYHRMTVIDRSEDGT 140
             VG       M   D+  +G 
Sbjct: 192 VPVGPDGGSQYMQQYDKDANGK 213

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score =  139 bits (353), Expect = 1e-41
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 9/143 (6%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             + ELL+ K   G KVL+IG+G G+ + V AE+VG+ G V  +E + E  E A      
Sbjct: 67  GMMCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKA-----E 119

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
                L    + +   DG  G    AP+D IY +   P+IP  ++ QLK GG+L+  VG+
Sbjct: 120 RTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179

Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
                R+ + ++  D    +   
Sbjct: 180 YL--QRLVLAEKRGDEIIIKDCG 200

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score =  137 bits (347), Expect = 1e-40
 Identities = 30/151 (19%), Positives = 65/151 (43%), Gaps = 9/151 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAE----LVGKTGRVFGVEHMREQCEDAWE 59
           A  ++ L   ++ G++ +D+GSGSG+++   A     L  K   V G+E +++    + E
Sbjct: 68  ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127

Query: 60  TVMRIRPDLLNDGRLHLRCRD----GRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGG 115
            + R +P+LL      +  ++              FDAI++     E+P  ++  L   G
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENG 187

Query: 116 RLVCGVGKSKSYHRMTVIDRSEDGTHFQKYE 146
           +L+  + +  +   +  I +        +  
Sbjct: 188 KLIIPIEEDYT-QVLYEITKKNGKIIKDRLF 217

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score =  135 bits (342), Expect = 9e-40
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 9/143 (6%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A ++E+   K   G  +L++G+GSG+ + + +E+V     V+ +E + E  E A   + R
Sbjct: 81  AIMLEIANLK--PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER 136

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
                     +H+   DG  G   +AP+D I ++   P+IP  ++ QLK GG+L+  VG 
Sbjct: 137 -----AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGS 191

Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
              +  +  + +++DG   + + 
Sbjct: 192 YHLWQELLEVRKTKDGIKIKNHG 214

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score =  128 bits (325), Expect = 3e-37
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 13/143 (9%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             +++ L+    +G KVL+IG+G G+ + + AE+V    +V  VE   +    A      
Sbjct: 60  IFMLDELDLH--KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYA------ 108

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
               L     + L   DG  G   + P+D + +    P +      QLK GG ++  +G 
Sbjct: 109 -SKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGV 167

Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
            +   ++  + +  +    +   
Sbjct: 168 GRV-QKLYKVIKKGNSPSLENLG 189

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score =  126 bits (319), Expect = 1e-35
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
            A  +E +     +G +VL+IG G+G+ + V + +VG+ G V  VE+ R+ CE A     
Sbjct: 64  MALFMEWVGL--DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA----- 116

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG 122
           +   + L    +   C DG  G+   +P+D I+++  V E+P +   QLK GGR++  + 
Sbjct: 117 KRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPIN 176

Query: 123 KSKSYHRMTVIDRSEDGT 140
              S  +   + + +D  
Sbjct: 177 LKLSRRQPAFLFKKKDPY 194

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score =  123 bits (310), Expect = 3e-35
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           AR+ ELLE      ++VL+IG+GSG+ + + A LV     V  VE ++     A     R
Sbjct: 67  ARMTELLELT--PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQA-----R 116

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK 123
            R   L+   +  R  DG  G   +APFDAI ++   PEIP +++ QL  GG LV  VG+
Sbjct: 117 RRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGE 176

Query: 124 SKSYHRMTVIDRSEDGTHFQKYE 146
                 +  + R          E
Sbjct: 177 EHQ--YLKRVRRRGGEFIIDTVE 197

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 68.5 bits (167), Expect = 3e-14
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           ++ LL+     G +VL+ G+GSG ++   A  VG+ G V   E        A   V    
Sbjct: 88  MVTLLDL--APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV---- 141

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS 124
                   +           L +A +D + L    P ++     L LKP   LV  +   
Sbjct: 142 RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 201

Query: 125 KSYHRMTVIDRSEDGTHFQKYEISL 149
                +     +      +  E+  
Sbjct: 202 TQVLELVRAAEAHPFRLERVLEVGW 226

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 67.3 bits (164), Expect = 9e-14
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           I  +L+  ++EG +++D G GSG M  V A  VG +G+VF  E   E  + A   + +  
Sbjct: 104 IAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG 161

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS 124
                  R+ ++ RD   G   +   DA++L    P          LK GGR       +
Sbjct: 162 ----LIERVTIKVRDISEG-FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT 216

Query: 125 KSYHRMTVIDRSEDGTHFQKYEISL 149
                     +       + +E   
Sbjct: 217 NQVQETLKKLQELPFIRIEVWESLF 241

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 63.9 bits (156), Expect = 9e-13
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
           ++++     ++EG  VLD+G+G+GF     +++VG+ G+V+ ++   E            
Sbjct: 28  KVLKEF--GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVN-----YAWE 80

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY------SILLQLKPGGRLV 118
           + + L    + +   +     L     D I+++    E+         +    KP   L 
Sbjct: 81  KVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLA 140

Query: 119 C 119
            
Sbjct: 141 I 141

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 10/116 (8%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
            I   L   + +  +VL+ G+GSG +  V +E+ G+      VE   +  +   +     
Sbjct: 82  YIALKLN--LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLG 139

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVC 119
           +        +     D +   + +  F A ++    P      +   L  G  +  
Sbjct: 140 K-------NVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGF 188

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 61.5 bits (149), Expect = 5e-12
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 16/126 (12%)

Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
           + ++  ++EG  V+D   G+G  +   A LVG+ GRVFG +   +   +  + +  +   
Sbjct: 14  DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71

Query: 68  LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYS--------------ILLQLKP 113
           L++   L           +       ++   Y+P   +S               +  L  
Sbjct: 72  LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT 131

Query: 114 GGRLVC 119
           GG +  
Sbjct: 132 GGIITV 137

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 61.6 bits (149), Expect = 9e-12
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
             A I+      I  G  +++ G GSG ++   A +VG  GRV   E   +  + AWE +
Sbjct: 81  DAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVC 119
                    D R+ ++ +D   G + +   D + L    P  +       LKPGG  V 
Sbjct: 139 KW----AGFDDRVTIKLKDIYEG-IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVA 192

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 1   MQQARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
            Q A  + + E  +++ G K+L+IG G G +S V A+ VG +G V G++           
Sbjct: 27  RQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPL- 85

Query: 60  TVMRIRPDLLNDG---RLHLRCRDGRTGLLHQAP---FDAIYLST---YV--PEIPYSIL 108
           T+ +    LL      RL +      +  L       FD + L+    Y         + 
Sbjct: 86  TLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLF 145

Query: 109 LQLKPGGRLVC 119
             +      V 
Sbjct: 146 KNMAAVCDHVD 156

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 61.4 bits (148), Expect = 2e-11
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           I+ +++     G  VL+ GSGSG MS   ++ VG  GRV   E  ++  + A +     R
Sbjct: 97  ILSMMDI--NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 154

Query: 66  P--------DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILL-QLKPGGR 116
                    +  ++     +   G T  +    FDA+ L    P +   +    LK GG 
Sbjct: 155 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 214

Query: 117 LVC 119
              
Sbjct: 215 CAV 217

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 11/118 (9%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A  I  L PK      + DIG GSG +  +              E   E+ E      + 
Sbjct: 15  ALAISALAPK--PHETLWDIGGGSGSI-AIEWLRSTPQTTAVCFEISEERRERILSNAIN 71

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAP-FDAIYL--STYVPEIPYSILLQLKPGGRLV 118
                L         +             D I++      P +  +   +L  GGRLV
Sbjct: 72  -----LGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLV 124

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 23/125 (18%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A +  +L  +++ G ++LD+GSGSG M C +A   G      G++        A     R
Sbjct: 26  ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKR---R 78

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI----------YLSTYVPEIPYSILLQLKP 113
                +++ R+H    D   G +     D              +     +  S    LKP
Sbjct: 79  AEELGVSE-RVHFIHNDAA-GYVANEKCDVAACVGATWIAGGFAGAEELLAQS----LKP 132

Query: 114 GGRLV 118
           GG ++
Sbjct: 133 GGIML 137

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 57.4 bits (138), Expect = 3e-10
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 8/147 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           + II      ++ G  +L++G GSG MS      +   G +  VE   +  + A + +  
Sbjct: 100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL-- 155

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVG 122
              +  + G +     D     +    +DA+      P      I   +KPG      + 
Sbjct: 156 --SEFYDIGNVRTSRSDIADF-ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLP 212

Query: 123 KSKSYHRMTVIDRSEDGTHFQKYEISL 149
                 +  +   +    H +  E+  
Sbjct: 213 NFDQSEKTVLSLSASGMHHLETVELMK 239

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
           R + +   +  +    +D+G G+G ++   A  V    RV+ ++       +A  T    
Sbjct: 22  RCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRN----PEAISTTEMN 74

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL---STYVPEIPYSILLQLKPGGRLV 118
                    + L   D    L      D   +      + EI   I  +LKPGGR++
Sbjct: 75  LQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRII 131

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 57.4 bits (138), Expect = 5e-10
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 17/121 (14%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLND-G 72
             EGA VLD+G G+G    + ++LVG+ G+V GV+ +  Q E A + V            
Sbjct: 81  SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140

Query: 73  RLHLRCRDGRTGLLHQAP--------FDAIYLS---TYVPEIPYSILLQ----LKPGGRL 117
           R ++R   G    L  A          D +  +           ++  +    L+ GG L
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTN-KLALFKEIHRVLRDGGEL 199

Query: 118 V 118
            
Sbjct: 200 Y 200

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 56.6 bits (136), Expect = 7e-10
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 14/120 (11%)

Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
             L+  ++ G  V  +  G                ++ G+++  E  + A          
Sbjct: 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL- 168

Query: 68  LLNDGRLHLRCRDGRTGLLHQAPFDAI---YLSTYVPEIPYSILL------QLKPGGRLV 118
               G++ L  +D    L  +  +D +    L+ Y P+      L       LKPGG LV
Sbjct: 169 ---AGQITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 55.3 bits (133), Expect = 9e-10
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A  +  L  +  +   + DIG+GS  +S   + L+   GR+F +E   +      + + +
Sbjct: 30  AVTLSKLRLQ--DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKK 86

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTY---VPEIPYSILLQLKPGGRLV 118
                     + L       GL      D +++      + EI  ++  +LK  G +V
Sbjct: 87  -----FVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIV 139

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A  +  L P+   G  + DIG GSG +S  +       GR   +E   ++ E+  + +  
Sbjct: 45  ALTLAALAPR--RGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDT 99

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL-STYVPEIPYSILLQLKPGGRLV 118
                    R+          L      +A+++       +   +   L PG R+V
Sbjct: 100 ----YGLSPRMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIV 151

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 31/162 (19%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWET 60
             I+E +  K      VL+ G G+G ++            V+G+     MR   ++    
Sbjct: 35  EDILEDVVNK--SFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP- 88

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LK 112
                          +   D  +        D I  +    ++ +   ++ +      L 
Sbjct: 89  -----------KEFSITEGDFLS-FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN 136

Query: 113 PGGRLVC--GVGKSKSYHRMTVIDRSEDGTHFQKYEISLENF 152
            GG++V    +   +  +  TV    + G H    ++  E +
Sbjct: 137 KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYY 178

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
           + +  +  ++ + AK+ DIG G+G  +   A+ V   G++ G++   +  E   E     
Sbjct: 36  KAVSFI-NELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNE---NA 89

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGGRLV 118
                 D R+                 D I+    +  I +   +      LK GG + 
Sbjct: 90  VKANCAD-RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIA 147

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 53.6 bits (128), Expect = 6e-09
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 13/117 (11%)

Query: 7   IELLEPKIQEGAKVLDIGSGSGFMSC-VFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
            E    + + G + + IG G   ++  + + + G   RV  VE   +  E +     R  
Sbjct: 113 NEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELS-----RKV 165

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVC 119
            + L    +++   D     +    FD + ++        +  +I   +    R++ 
Sbjct: 166 IEGLGVDGVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 23/126 (18%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETV 61
            +   +     E   +LD+G+G+G +S    E   +      V   E M E  ++     
Sbjct: 33  GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNR---- 87

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKP 113
                    + ++     D       +  +D +  +    ++ +     L +     LK 
Sbjct: 88  ------FRGNLKVKYIEADYSKYDFEE-KYDMVVSALSIHHLEDEDKKELYKRSYSILKE 140

Query: 114 GGRLVC 119
            G  + 
Sbjct: 141 SGIFIN 146

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 31/139 (22%)

Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDA 57
             +AR+I+ + P+   GAK+LD G G G +      L  +   V G      + +  +  
Sbjct: 34  YGEARLIDAMAPR---GAKILDAGCGQGRIG---GYLSKQGHDVLGTDLDPILIDYAK-- 85

Query: 58  WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS----TYVPEIPYSILLQ--- 110
                +  P+            D     + +  FD I  +     ++ E      L    
Sbjct: 86  -----QDFPE------ARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIH 134

Query: 111 --LKPGGRLVCGVGKSKSY 127
             L   GR V G G  + +
Sbjct: 135 RALGADGRAVIGFGAGRGW 153

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
           + +  +   + E + + DIG G+G  + V A  V   G+V G++ +    +         
Sbjct: 36  KALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNR---NA 89

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGGRLV 118
           R   L + R+                 D I+    +  I +   L      LK GG L 
Sbjct: 90  RQSGLQN-RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLA 147

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 24/121 (19%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
             +  +     +   ++D G G+GF      E   K   ++ ++      ++  E     
Sbjct: 8   EYLPNIFEG--KKGVIVDYGCGNGFYCKYLLEFATK---LYCIDINVIALKEVKE----- 57

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY-SILLQ-----LKPGGRLV 118
                   +            +     D I  +    ++     ++      LK  GR++
Sbjct: 58  --------KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109

Query: 119 C 119
            
Sbjct: 110 I 110

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 50.5 bits (120), Expect = 6e-08
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 15/125 (12%)

Query: 2   QQARIIELLEP-KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
             A +++ L    ++EG ++L +G  SG  +   ++++G  GR++GVE       D    
Sbjct: 62  LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV 121

Query: 61  VMR---IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKP 113
           V     I P +L D R   + R            D +Y     PE    ++      L+ 
Sbjct: 122 VRDRRNIFP-ILGDARFPEKYRHL------VEGVDGLYADVAQPEQAAIVVRNARFFLRD 174

Query: 114 GGRLV 118
           GG ++
Sbjct: 175 GGYML 179

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 31/122 (25%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
           KI +   ++D G G G++  V   L+ +  +  G++                   LL + 
Sbjct: 19  KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID---------------SGETLLAEA 63

Query: 73  RLHLRCRDGRTGLL----HQAP----FDAIYLST---YVPEIPYSILLQ----LKPGGRL 117
           R   R     +  L     +      +D         ++   P ++L +    +K GG++
Sbjct: 64  RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTT-PETMLQKMIHSVKKGGKI 122

Query: 118 VC 119
           +C
Sbjct: 123 IC 124

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 23/122 (18%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A  I  L     +   V+D+G GSG M+    E+  +   V+ ++++    E   +    
Sbjct: 25  AVSIGKLNLN--KDDVVVDVGCGSGGMTV---EIAKRCKFVYAIDYLDGAIEVTKQ---- 75

Query: 64  IRPDLLNDGRLHLRCRDGRTG----LLHQAPFDAIYL--STYVPEIPYSILLQLKPGGRL 117
                 N  + +++      G    +L +  F+  ++  +  + +I    +L  K    +
Sbjct: 76  ------NLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKI--IEILDKKKINHI 127

Query: 118 VC 119
           V 
Sbjct: 128 VA 129

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             I+  +    ++  +VLD+G G G++      L  +     GV+  R   + A      
Sbjct: 42  QAILLAILG--RQPERVLDLGCGEGWLL---RALADRGIEAVGVDGDRTLVDAA------ 90

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIP-YSILLQ-----LKPGGRL 117
            R     +  L    +     +     +D I  + +         LL      L PGG L
Sbjct: 91  -RAAGAGEVHLASYAQLAEAKVPVGKDYDLIC-ANFALLHQDIIELLSAMRTLLVPGGAL 148

Query: 118 VCGVG---------KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA 159
           V                 +   +    + D      Y  +L +++N L  A
Sbjct: 149 VIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA 199

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 28/136 (20%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWET 60
             +++LL P  Q G  +LD+G G+G ++    ++      V G      M E+    +  
Sbjct: 47  EDLLQLLNP--QPGEFILDLGCGTGQLT---EKIAQSGAEVLGTDNAATMIEKARQNYP- 100

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPY---SILLQLKPG 114
                        LH    D R       P DA++ +    +V E      SI   LK G
Sbjct: 101 ------------HLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSG 147

Query: 115 GRLVCGVGKSKSYHRM 130
           GR V   G   +   +
Sbjct: 148 GRFVAEFGGKGNIKYI 163

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 23/122 (18%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWE 59
           +      L   +    +VL+ G G G  +  F        R         + +       
Sbjct: 35  ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARA--- 88

Query: 60  TVMRIRPDLLNDGRLHLRCRDGRTGLLHQ--APFDAIYLSTYVPEIPYSILLQ-LKPGGR 116
                     N     +   +G+  L     APF  I  S   P      L +   P   
Sbjct: 89  ----------NAPHADVYEWNGKGELPAGLGAPFGLIV-SRRGPTSVILRLPELAAPDAH 137

Query: 117 LV 118
            +
Sbjct: 138 FL 139

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 3   QARIIELLEPK--IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
             R+ + +     ++ G +VLD+G G G  +   A       RV G+   R Q   A   
Sbjct: 46  TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANA- 102

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY----------LSTYVPEIPYSILLQ 110
             R     L + R+     D        A FDA++              + E+   +   
Sbjct: 103 --RATAAGLAN-RVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREM-ARV--- 155

Query: 111 LKPGGRLV 118
           L+PGG + 
Sbjct: 156 LRPGGTVA 163

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWET 60
           Q   +++ L  +      ++D G G G    +      + G RV GV     Q +     
Sbjct: 104 QAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHR---RFGSRVEGVTLSAAQADFGNR- 158

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGG 115
             R R   ++D  +  R  +       +    A + +     +    L       LK GG
Sbjct: 159 --RARELRIDD-HVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGG 215

Query: 116 RLVC 119
           R V 
Sbjct: 216 RYVT 219

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 27/137 (19%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETV 61
           ++  +     ++  GAK+L++G G+G+ +          G  V   +   E   +A    
Sbjct: 30  RSATLTKFLGELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASR-- 83

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYLSTYVPEIPYSILLQ--------LK 112
                      RL    R      L     +DA++    +  +P   L          LK
Sbjct: 84  -----------RLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALK 132

Query: 113 PGGRLVCGVGKSKSYHR 129
           PGG         +   R
Sbjct: 133 PGGLFYASYKSGEGEGR 149

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 20/125 (16%)

Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD 67
           + L   + + + V+D   G+G  +   A L G + +V+  +   +      +   R+   
Sbjct: 14  DFLAEVLDDESIVVDATMGNGNDT---AFLAGLSKKVYAFDVQEQALGKTSQ---RLSDL 67

Query: 68  LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY--------------SILLQLKP 113
            + +  L L   +     + +    AI+   Y+P                   IL +L+ 
Sbjct: 68  GIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV 127

Query: 114 GGRLV 118
           GGRL 
Sbjct: 128 GGRLA 132

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMR 63
           +I+  +E  + E +KVLDIGSG G        +  K G    G++        A E V  
Sbjct: 46  KILSDIE--LNENSKVLDIGSGLGGGCM---YINEKYGAHTHGIDICSNIVNMANERVSG 100

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY--LSTYVPEIP-YSILLQ-----LKPGG 115
                  + ++     D  T    +  FD IY   +     +   + L Q     LKP G
Sbjct: 101 -------NNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTG 153

Query: 116 RLV 118
            L+
Sbjct: 154 TLL 156

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 36/132 (27%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A+++++   K     +VLD+ +G G ++  FA  V    +V   +               
Sbjct: 27  AKLMQIAALK--GNEEVLDVATGGGHVANAFAPFV---KKVVAFD--------------- 66

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAP----------FDAIYLST---YVPEIP---YSI 107
           +  D+L   R  +     +     Q            F  +       + P         
Sbjct: 67  LTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEA 126

Query: 108 LLQLKPGGRLVC 119
              LK GG+L+ 
Sbjct: 127 YRVLKKGGQLLL 138

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 27/133 (20%)

Query: 2   QQARIIE---LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAW 58
           +QA  +E     +     GAKVL+ G G G  + + A+       +  ++   E  E A 
Sbjct: 20  EQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKA- 77

Query: 59  ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAIYLST---YVPEIPYSILLQ 110
               R   +      +     +     +   P     FD I++     ++   P   L  
Sbjct: 78  ----RENTEKNGIKNVKFLQAN-----IFSLPFEDSSFDHIFVCFVLEHLQS-PEEALKS 127

Query: 111 ----LKPGGRLVC 119
               LKPGG +  
Sbjct: 128 LKKVLKPGGTITV 140

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 20/154 (12%)

Query: 7   IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
           ++ +   + +GA++LD+GS   ++     ++ G        E +    + A + V     
Sbjct: 12  LQKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHG- 69

Query: 67  DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSIL----LQLKPGGRLV-CGV 121
                 ++ +R  +G +        D I +      +   IL     +L+    LV    
Sbjct: 70  ---LTSKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN 126

Query: 122 GKSKSY------HRMTVIDRS--EDGTHFQKYEI 147
            +          +   ++      +      YEI
Sbjct: 127 NREDDLRKWLAANDFEIVAEDILTENDKR--YEI 158

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
            +Q  AK LD+G+G G  +       G    +  +     Q +   E         L D 
Sbjct: 79  VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEE---YNNQAGLAD- 132

Query: 73  RLHLRCRDGRTGLLHQAPFDAIY---LSTYVPEIP--YSILLQ-LKPGGRLVC 119
            + ++             +D I+      + P+    +    + LKP G +  
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAI 185

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 19/196 (9%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
           +   +  LL   +++  KVLD+  G G  S +  +   +   V GV+   +    A E  
Sbjct: 24  RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYA 80

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ--------LKP 113
                +      +     D R        FD +     +       L Q        LKP
Sbjct: 81  KSRESN------VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP 134

Query: 114 GGRLVCGVG-KSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL-INADEQNDNWLYQQS 171
            G+ +       +   R+             K     E     +   +++ +    +   
Sbjct: 135 SGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194

Query: 172 RSEDGTHFQKYEISLE 187
                    K   + E
Sbjct: 195 GKTGVELLAKLYFTKE 210

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 9/116 (7%)

Query: 7   IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
           +EL+   + +GA +LD+GS   ++     E  G+       E +    + A + V     
Sbjct: 6   LELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHG- 63

Query: 67  DLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSIL----LQLKPGGRLV 118
                 ++ +R  +G            I ++     +   IL     +L    RL+
Sbjct: 64  ---LKEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLI 116

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 25/116 (21%)

Query: 17  GAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLH 75
              +LD+GSG+G  +   A L    G ++ G+E      E A +T             + 
Sbjct: 42  DGVILDVGSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTH----------PSVT 87

Query: 76  LRCRDGRTGLLHQAPFDAIYLSTYV-----PEIPYSILLQ----LKPGGRLVCGVG 122
                          +  + L+ Y      P      L+     ++ GG L+    
Sbjct: 88  FHHGTITDLSDSPKRWAGL-LAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF 142

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 17/146 (11%), Positives = 31/146 (21%), Gaps = 32/146 (21%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAW 58
                +   E        ++D   G+G  +   ++      RV G+   +   E      
Sbjct: 42  AVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKE- 97

Query: 59  ETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQAPFDAIYLSTYV-----PEIPYSILL 109
                          +  R  DG        +H    DA             E    +  
Sbjct: 98  ----------NTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQ 147

Query: 110 Q----LKPGGRLV--CGVGKSKSYHR 129
                L   G +           +  
Sbjct: 148 SLRILLGKQGAMYLIELGTGCIDFFN 173

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
              +E L         VL++ SG+G+ +   + L     RV  ++   E   +A      
Sbjct: 35  PAALERL-RAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEA-----G 85

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKPGG 115
                     +  R +D          +DA++ +    +VP+  +    +     + PGG
Sbjct: 86  RH----GLDNVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG 140

Query: 116 RLV 118
            + 
Sbjct: 141 VVE 143

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 36/132 (27%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             +I+  E   +   +VLDIG+G+G  +  F+  V       GV+               
Sbjct: 11  GLMIKTAEC--RAEHRVLDIGAGAGHTALAFSPYV---QECIGVD--------------- 50

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAP----------FDAIYLST---YVPEIP---YSI 107
              +++       + +        Q            FD I       +  ++      +
Sbjct: 51  ATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110

Query: 108 LLQLKPGGRLVC 119
              LK  GR + 
Sbjct: 111 ARVLKQDGRFLL 122

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           ++  L  K     +V+D+G G G +  +  +      ++ GV+      E A E + R+R
Sbjct: 21  VVAAL--KQSNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQERLDRLR 77

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST--------YVPEIPYSILLQLKPGGRL 117
                  RL L              +DA  +           +      +    +P   +
Sbjct: 78  LPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137

Query: 118 V 118
           V
Sbjct: 138 V 138

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 34/131 (25%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEH---MREQCEDAWET 60
             +    P  +   +VLDIG G G     F EL  + G    GV+    M + CE     
Sbjct: 30  ARLRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEG---- 81

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDAIYLSTYV----PEIPYSILLQ---- 110
                       + ++   D    L  L     D + +S +V    PE  + +L      
Sbjct: 82  ------------KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSK 129

Query: 111 LKPGGRLVCGV 121
           +K    +V   
Sbjct: 130 MKYSSYIVIES 140

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 25/191 (13%), Positives = 50/191 (26%), Gaps = 55/191 (28%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV-------EHMREQCEDA 57
            + ++L         VLD+G G G+     AE   K  +V G+          + +    
Sbjct: 35  ELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSP 90

Query: 58  WETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIP---YSILLQL 111
                           +    +      +    ++ +  S    Y+         + + L
Sbjct: 91  ---------------VVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINL 135

Query: 112 KPGGRLVCGVG-----------------------KSKSYHRMTVIDRSEDGTHFQKYEIS 148
           K  G  +  V                            Y   ++      G   QKY  +
Sbjct: 136 KSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195

Query: 149 LENFINPLINA 159
           +  +I  L+  
Sbjct: 196 VTTYIQTLLKN 206

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 44.6 bits (104), Expect = 7e-06
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 7  IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWE 59
          + +L+P+   G  VLD+G   G ++   A   G + R+ G++        A +
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQ 88

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 15  QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL 74
              +  L+IG  +G  +    +L     R+  ++ M          + R          +
Sbjct: 50  GAVSNGLEIGCAAGAFT---EKLAPHCKRLTVIDVMP-------RAIGRACQRTKRWSHI 99

Query: 75  HLRCRDGRTGLLHQAPFDAIYLST---YVPEIPY------SILLQLKPGGRLVCG 120
                D          FD I ++    Y+ ++        +++  L PGG LV G
Sbjct: 100 SWAATDI-LQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 9   LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE----HMREQCEDAWETVMRI 64
           L    I++G KVL +G+ SG      ++++   G+ +GVE     +RE    A +    I
Sbjct: 69  LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVA-QRRPNI 127

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
            P LL D R     +            D +Y+    P+     +      LK  G ++
Sbjct: 128 FP-LLADARFPQSYK------SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDML 178

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 16/114 (14%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH----MREQCEDAWETVMRIRPDL 68
            I+ GAKVL +G+ SG      +++VG  G V+ VE      R+    A +    I P +
Sbjct: 74  HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA-KKRTNIIP-V 131

Query: 69  LNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
           + D R   + R            D I+     P+    + L     L+ GG  V
Sbjct: 132 IEDARHPHKYRMLIA------MVDVIFADVAQPDQTRIVALNAHTFLRNGGHFV 179

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
             A++I+ +  K+ +    +D+GSG G +    A         +GVE      + A    
Sbjct: 161 LVAQMIDEI--KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMD 217

Query: 62  MRIRPDL----LNDGRLHLRCRDGRTGLLHQAPFDA--IYLSTYV--PEIPYS---ILLQ 110
              R  +           L   D  +    +   +   I+++ +   PE+ +        
Sbjct: 218 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFAN 277

Query: 111 LKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEIS 148
           +K GGR+V     +    R+   + S+ GT  +  E+S
Sbjct: 278 MKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELS 315

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 27/131 (20%)

Query: 2   QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV 61
            ++ II   E  +++ A+VLD+G G G+ +   +       +  GV+      +   E  
Sbjct: 39  SRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKE-- 93

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAIYLSTYVPEIP-YSILLQ----- 110
                       L     D         P     F+AI     +         L      
Sbjct: 94  ------RGEGPDLSFIKGDL-----SSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRV 142

Query: 111 LKPGGRLVCGV 121
           LK  G     +
Sbjct: 143 LKSDGYACIAI 153

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 18/124 (14%)

Query: 9   LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL 68
           + E    E   ++D+G G G  +   A+ +    ++ G +      + A      +  + 
Sbjct: 29  IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTA-----EVIKEG 83

Query: 69  LNDGRLHLRCRDGR--------TGLLHQAPFDAIYLSTYVPEIPYSILLQ-----LKPGG 115
             D   ++  +              + +   D I          +    +     L+  G
Sbjct: 84  SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDG 143

Query: 116 RLVC 119
            +  
Sbjct: 144 TIAI 147

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 7  IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP 66
          +E +   I +  ++ DIGS   ++ C   +           E +    + A + V     
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSG- 69

Query: 67 DLLNDGRLHLRCRDGRTGLLHQAPFDAI 94
                ++ +R  +G   +  +   D I
Sbjct: 70 ---LTEQIDVRKGNGLAVIEKKDAIDTI 94

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 25/133 (18%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAWE 59
           A ++ LL        +VLD+  G+G  S +  E     G  V  V   + M +       
Sbjct: 47  AWLLGLLRQH--GCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERW 100

Query: 60  TVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI--------YLSTYVPEIPY------ 105
              R  P                  +     FDA+        +L     +         
Sbjct: 101 N-RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALK 159

Query: 106 SILLQLKPGGRLV 118
           +I   ++PGG LV
Sbjct: 160 NIASMVRPGGLLV 172

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 31/139 (22%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVE---HMREQCEDAW 58
              ++    P       +L++GS  G     F   + +    +  VE         +   
Sbjct: 30  HPFMVRAFTPFF-RPGNLLELGSFKGD----FTSRLQEHFNDITCVEASEEAISHAQGRL 84

Query: 59  ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSILLQ----- 110
           +  +        D                   +D I L+    ++ + P ++L +     
Sbjct: 85  KDGITYIHSRFED-------------AQLPRRYDNIVLTHVLEHIDD-PVALLKRINDDW 130

Query: 111 LKPGGRLVCGVGKSKSYHR 129
           L  GGRL      + +  R
Sbjct: 131 LAEGGRLFLVCPNANAVSR 149

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 29/129 (22%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
            II             +DIGSG G +S   A+       +  ++  +   E A + +   
Sbjct: 35  NIINRFGIT---AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADA 89

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAP-----FDAI---YLSTYVPEIPYSILLQ-----L 111
                 + R+ +   D      H  P      D I       +  ++  +   +     L
Sbjct: 90  NL----NDRIQIVQGDV-----HNIPIEDNYADLIVSRGSVFFWEDVATA--FREIYRIL 138

Query: 112 KPGGRLVCG 120
           K GG+   G
Sbjct: 139 KSGGKTYIG 147

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 23/125 (18%), Positives = 33/125 (26%), Gaps = 16/125 (12%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM 62
              I+ L++       + L  G G G      A        V G++        A ET  
Sbjct: 53  TPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANET-- 107

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ--------LKPG 114
                            D  T       FD I+   +   I   +           LKP 
Sbjct: 108 --YGSSPKAEYFSFVKEDVFT-WRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPD 164

Query: 115 GRLVC 119
           G L+ 
Sbjct: 165 GELIT 169

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETV 61
            +  ++   +QE  ++LDIG GSG +S   A    K   V G+            A    
Sbjct: 19  DLYPIIHNYLQEDDEILDIGCGSGKISLELAS---KGYSVTGIDINSEAIRL---AETAA 72

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSIL-LQ-----LK 112
                +    G+   +  +  +   H + FD   +    T VP+       ++     LK
Sbjct: 73  RSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLK 132

Query: 113 PGGRLVC 119
           PG  L  
Sbjct: 133 PGAYLYL 139

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 25/125 (20%)

Query: 8   ELLEP-KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMR 63
           +LL    ++      D+G G G  + +  +  G    + G+   + M E+  D       
Sbjct: 24  DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKAAD------- 75

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIP---YSILLQLKPGGRL 117
                      +    D  T        D +Y +    +VP+       ++ QL+ GG L
Sbjct: 76  ------RLPNTNFGKADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVL 128

Query: 118 VCGVG 122
              + 
Sbjct: 129 AVQMP 133

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           ++ +L+       KV+D+G G G +  +  +      ++ GV+      E A + +   R
Sbjct: 21  VVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLKIDR 77

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKPGGRL 117
              +   R+ L            + +DA  +     ++ E       +      +P   +
Sbjct: 78  LPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVI 137

Query: 118 V 118
           V
Sbjct: 138 V 138

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 27/124 (21%)

Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRP 66
            LL+   +E  +VLDIG  SG         + + G RV G+E   E  E A E +     
Sbjct: 24  NLLKHIKKEWKEVLDIGCSSGA----LGAAIKENGTRVSGIEAFPEAAEQAKEKL----- 74

Query: 67  DLLNDGRLHLRCRDGRTGLLHQAP--FDAIYLST---YVPEIPYSILLQ----LKPGGRL 117
                   H+   D  T  +      FD +       ++ + P++++ +    +K  G +
Sbjct: 75  -------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD-PWAVIEKVKPYIKQNGVI 126

Query: 118 VCGV 121
           +  +
Sbjct: 127 LASI 130

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 9   LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH---MREQCEDAWETVMRIR 65
           L    I+ G  VL +G  SG  +   +++VG  G++FG+E    +  +     E    I 
Sbjct: 66  LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLV 118
           P +L D       R            D I+     P     ++      LK GG  +
Sbjct: 126 P-ILGDATKPEEYRALVP------KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGM 175

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 38/135 (28%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             +   + P   E    L++G G+G ++     L+ +  R   ++               
Sbjct: 28  TAMASAVHP-KGEEPVFLELGVGTGRIA---LPLIARGYRYIALD--------------- 68

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLH---------QAPFDAIYLST---YVPEIPYSILLQ- 110
               +L   R  +   D +  ++                + +      VP+ P    L  
Sbjct: 69  ADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKV--LAE 126

Query: 111 ----LKPGGRLVCGV 121
               LKPGG L+ G 
Sbjct: 127 AIRVLKPGGALLEGW 141

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 35/141 (24%)

Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHM----REQ 53
           +    I   LE  ++   +VLD+G G+G  S    E   +   V  V   + M    RE+
Sbjct: 39  LYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQE---RGFEVVLVDPSKEMLEVAREK 95

Query: 54  CEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST----YVPEIPY---S 106
                         +       L    G         F+A+        YV         
Sbjct: 96  GVKNV---------VEAKAE-DLPFPSGA--------FEAVLALGDVLSYVENKDKAFSE 137

Query: 107 ILLQLKPGGRLVCGVGKSKSY 127
           I   L P G L+  V    ++
Sbjct: 138 IRRVLVPDGLLIATVDNFYTF 158

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 31/197 (15%)

Query: 3   QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAW 58
            +   E           VL++ +G G ++  F +L    G  V  +     +        
Sbjct: 69  TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRL 124

Query: 59  ETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST----YVPEIPYSILLQ---- 110
                         R  L   D          F  + +S+     + E     L      
Sbjct: 125 A-----EAPADVRDRCTLVQGDMSA-FALDKRFGTVVISSGSINELDEADRRGLYASVRE 178

Query: 111 -LKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQ 169
            L+PGG+ +  +           ++R ++          L     P   A+E  +  ++ 
Sbjct: 179 HLEPGGKFLLSLA-MSEAAESEPLERKQELPGRSGRRYVLHVRHLP---AEEIQEITIHP 234

Query: 170 QSRSEDG----THFQKY 182
              + D     TH ++ 
Sbjct: 235 ADETTDPFVVCTHRRRL 251

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 42/131 (32%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE---HMREQCEDAWET 60
             II LL     +G+ + DIG+G+G  S     L  +   V+ VE    MR+Q       
Sbjct: 24  NAIINLLNLP--KGSVIADIGAGTGGYS---VALANQGLFVYAVEPSIVMRQQA------ 72

Query: 61  VMRIRPDL-LNDGR-LHLRCRDGRTGLLHQAPFDAIYLSTYV-----------PEIPYSI 107
              + P +    G   +L   D           D + +S               E+   I
Sbjct: 73  --VVHPQVEWFTGYAENLALPDKS--------VDGV-ISILAIHHFSHLEKSFQEM-QRI 120

Query: 108 LLQLKPGGRLV 118
              ++ G  ++
Sbjct: 121 ---IRDGTIVL 128

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 27/122 (22%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
            +    + ++IG G+G  +              GVE      E A +  + +        
Sbjct: 44  CLLPEGRGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGVFVL---KGTA 93

Query: 73  RLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ----LKPGGRLVCGVGKSK 125
             +L  +D          FD   + T   +V + P   L +    LK GG L+ G+   +
Sbjct: 94  -ENLPLKDES--------FDFALMVTTICFVDD-PERALKEAYRILKKGGYLIVGIVDRE 143

Query: 126 SY 127
           S+
Sbjct: 144 SF 145

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 32/132 (24%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-RVFGV---EHMREQCEDAWETV 61
           IIE            LD+  G+G ++              + V   + M  + E+ + + 
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRS- 81

Query: 62  MRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPY------------SILL 109
                      +  L C+D    L     FD I          Y            ++  
Sbjct: 82  --------QGLKPRLACQDISN-LNINRKFDLITCCLDS--TNYIIDSDDLKKYFKAVSN 130

Query: 110 QLKPGGRLVCGV 121
            LK GG  +  +
Sbjct: 131 HLKEGGVFIFDI 142

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 31/125 (24%)

Query: 8   ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGV---EHMREQCEDAWETVMRI 64
             L+  +  G  +L++G+G+G+             +  GV   E M             +
Sbjct: 28  RALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRRAPEATWV 82

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLST---YVPEIPYSILLQ-----LKPGGR 116
           R          L              FD + L T   +V ++     L      L+PGG 
Sbjct: 83  RAWG-----EALPFPGES--------FDVVLLFTTLEFVEDVERV--LLEARRVLRPGGA 127

Query: 117 LVCGV 121
           LV GV
Sbjct: 128 LVVGV 132

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 22/123 (17%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
            +  +L      G +++D+G G G+      E       V G++   +    A       
Sbjct: 34  ALRAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARA----- 84

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSILLQ-----LKPGGR 116
                 D  +     D     L Q  FD  Y S    YV ++    L +     L PGG 
Sbjct: 85  ---AGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA--RLFRTVHQALSPGGH 139

Query: 117 LVC 119
            V 
Sbjct: 140 FVF 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 49/243 (20%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVF--AEL---------VGKTGRVFGV--EHMRE 52
           I+ + E    +     D+         +    E+         V  T R+F        E
Sbjct: 21  ILSVFEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 53  QCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGLLHQAPFDAIYLSTYVPEIPYSI---- 107
             +   E V+RI    L    +    R       ++    D +Y +       Y++    
Sbjct: 78  MVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLY-NDNQVFAKYNVSRLQ 135

Query: 108 --------LLQLKPGGRLVC----GVGKS----KSYHRMTVIDRSEDGTHFQK--YEISL 149
                   LL+L+P   ++     G GK+           V  + +    +       S 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 150 ENFINPLINADEQNDNWLYQQS--------RSEDGTHFQKYEISLENFINPLINADEQND 201
           E  +  L     Q D     +S        R        +  +  + + N L+      +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 202 NWL 204
              
Sbjct: 256 AKA 258

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
                ++ D+G+G+G      A  + K   V   E  +E  E A  ++        +  
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSA- 90

Query: 73 RLHLRCRD 80
          R+ +   D
Sbjct: 91 RIEVLEAD 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.85
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.83
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.82
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.81
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.8
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.8
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.78
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.76
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.75
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.73
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.72
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.72
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.71
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.71
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.71
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.71
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.71
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.71
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.71
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.7
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.7
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.7
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.7
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.7
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.69
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.69
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.69
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.69
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.68
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.68
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.67
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.67
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.67
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.67
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.67
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.66
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.66
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.65
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.65
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.65
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.65
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.65
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.65
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.64
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.64
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.64
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.64
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.64
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.64
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.64
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.64
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.64
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.64
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.63
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.63
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.63
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.63
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.63
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.63
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.63
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.62
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.62
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.62
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.62
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.62
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.62
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.62
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.62
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.61
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.61
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.61
3ocj_A	305	Putative exported protein; structural genomics, PS	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.61
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.61
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.61
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.61
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.6
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.6
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.6
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.6
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.6
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.6
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.6
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.6
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.6
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.6
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.59
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.59
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.59
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.59
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.59
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.59
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.59
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.59
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.59
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.58
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.58
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.58
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.58
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.58
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.58
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.58
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.57
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.57
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.57
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.57
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.57
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.57
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.57
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.57
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.57
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.57
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.57
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.56
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.56
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.56
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.56
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.55
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.55
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.55
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.55
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.54
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.54
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.54
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.54
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.53
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.53
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.53
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.53
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.52
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.52
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.52
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.52
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.52
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.52
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.51
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.51
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.51
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.51
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.51
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.5
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.5
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.5
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.5
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.5
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.5
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.5
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.49
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.49
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.49
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.48
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.48
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.48
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.47
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.47
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.47
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.47
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.46
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.46
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.46
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.45
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.45
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.45
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.45
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.45
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.45
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.43
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.43
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.43
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.43
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.41
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.41
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.41
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.41
2o07_A	304	Spermidine synthase; structural genomics, structur	99.41
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.4
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.4
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.4
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.4
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.4
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.4
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.4
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.4
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.39
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.38
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.38
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.38
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.37
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.37
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.37
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.37
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.37
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.37
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.36
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.36
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.36
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.35
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.35
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.34
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.34
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.34
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.34
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.34
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.33
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.32
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.32
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.31
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.31
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.3
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.29
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.27
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.27
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.27
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.25
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.25
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.25
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.24
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.24
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.24
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.23
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.23
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.23
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.22
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.22
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.22
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.21
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.21
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.18
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.17
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.17
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.17
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.17
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.15
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.14
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.14
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.13
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.12
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.1
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.09
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.08
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.06
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.03
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.0
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.0
3lkd_A	542	Type I restriction-modification system methyltrans	98.96
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.96
3khk_A	544	Type I restriction-modification system methylation	98.94
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.92
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.83
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.76
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.75
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.67
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.64
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.62
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.58
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.58
3ufb_A	530	Type I restriction-modification system methyltran	98.57
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.57
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.54
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.45
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.37
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.33
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.28
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.25
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.2
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.18
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.15
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.07
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.94
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.94
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.91
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.85
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.73
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.64
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.57
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.55
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.51
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.5
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.49
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.49
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.48
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.44
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.41
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.41
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.4
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.37
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.33
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.32
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.29
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.27
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.24
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.21
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.21
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.2
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.18
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.18
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.17
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.16
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.15
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.15
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.11
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.11
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.04
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.03
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.01
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.98
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.95
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.92
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.92
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.89
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.85
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.85
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.84
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.83
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.82
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.8
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.78
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.77
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.77
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.74
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.74
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.74
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.69
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.61
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.59
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.54
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.5
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.47
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.43
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.43
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.41
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.39
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.38
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.33
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.33
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.28
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.27
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.27
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.25
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.13
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.1
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.05
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.04
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.0
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.8
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.79
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.67
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	95.64
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	95.63
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.62
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	95.53
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.26
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.1
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	94.97
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.83
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.66
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.65
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.6
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.53
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	94.36
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	94.29
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	94.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.06
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.98
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.88
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.73
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.7
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.65
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.63
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.59
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.41
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	93.25
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.99
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.92
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.91
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	92.85
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.78
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	92.66
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.31
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	92.2
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.08
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.03
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.6
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.55
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	91.36
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.3
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.16
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.01
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.82
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.81
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.77
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	90.74
3me5_A	482	Cytosine-specific methyltransferase; structural ge	90.69
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	90.61
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.56
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	90.47
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.2
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.01
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.59
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.39
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	89.27
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.2
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	89.07
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.06
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	88.86
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	88.82
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	88.06
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	88.01
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	87.84
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.84
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.72
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	87.19
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	86.95
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	86.7
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.59
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	86.57
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	86.51
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	86.46
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	86.4
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	86.04
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	86.03
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	86.03
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.87
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	85.84
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	85.83
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.39
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.3
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	85.29
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.1
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.03
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.94
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.87
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	84.75
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	84.2
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	83.86
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	83.78
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	83.57
1xq1_A	266	Putative tropinone reducatse; structural genomics,	83.46
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.34
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	83.07
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	82.99
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	82.99
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	82.83
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	82.82
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	82.64
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	82.55
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	82.08
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	81.75
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	81.69
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	81.68
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	81.54
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	81.24
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	81.17
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.12
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	81.05
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.97
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	80.83
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	80.82
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	80.67
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	80.53
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	80.47
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	80.4

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.85  E-value=3.1e-20  Score=142.36  Aligned_cols=156  Identities=38%  Similarity=0.670  Sum_probs=124.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .+.+++.+..++.++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...+...+...++.+..+|..
T Consensus        64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  143 (226)
T 1i1n_A           64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  143 (226)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence            44566666545678999999999999999999998765569999999999999999988764310000257999999987


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccccc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINAD  160 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ......++||+|+++.+.+++++.+.++|||||++++++.+......+..+.+..++.+......+..  |.|+....
T Consensus       144 ~~~~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~p~~~~~  219 (226)
T 1i1n_A          144 MGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVI--YVPLTDKE  219 (226)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEEC--CCBCCCHH
T ss_pred             cCcccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceE--EEeccCCc
Confidence            55444568999999999999999999999999999999887655566666777667777777777777  88887643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.83  E-value=1.2e-19  Score=139.25  Aligned_cols=153  Identities=29%  Similarity=0.508  Sum_probs=121.2

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC-----CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEE
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK-----TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL   76 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (216)
                      +.+.+++.+..++.++.+|||+|||+|+.+..+++..+.     ..+|+++|+++.+++.|++++...+...+...++.+
T Consensus        70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  149 (227)
T 1r18_A           70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  149 (227)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence            345667777545788999999999999999999987542     249999999999999999987663200000157999


Q ss_pred             EeccCCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecc
Q psy14962         77 RCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL  156 (216)
Q Consensus        77 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      ..+|........++||+|++....+++++.+.++|||||++++.+.++.....+..+.+..++.+......+..  |.|+
T Consensus       150 ~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~p~  227 (227)
T 1r18_A          150 VEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVM--YVPL  227 (227)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEEC--CCCC
T ss_pred             EECCcccCCCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEE--EeeC
Confidence            99998764444478999999999999999999999999999999987766678888888777778877777777  7664

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.82  E-value=6.1e-19  Score=133.59  Aligned_cols=142  Identities=32%  Similarity=0.514  Sum_probs=116.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ...+++.+.  +.++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+.     .++.+..+|..
T Consensus        66 ~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~  135 (210)
T 3lbf_A           66 VARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDL-----HNVSTRHGDGW  135 (210)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGG
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC-----CceEEEECCcc
Confidence            445555554  578899999999999999999988   35999999999999999999988553     57999999987


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA  159 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (216)
                      ......++||+|+++..++++++.+.+.|+|||++++.+++.  ...+..+.+. +..+.........  |.|+.+.
T Consensus       136 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~--f~pl~~~  207 (210)
T 3lbf_A          136 QGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEE--HQYLKRVRRR-GGEFIIDTVEAVR--FVPLVKG  207 (210)
T ss_dssp             GCCGGGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEEECSS--SCEEEEEEEE-TTEEEEEEEEECC--CCBCCCS
T ss_pred             cCCccCCCccEEEEccchhhhhHHHHHhcccCcEEEEEEcCC--ceEEEEEEEc-CCeEEEEEeccEE--EEEccCc
Confidence            665556789999999999999999999999999999999883  3555556553 4567777777777  8887653

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.81  E-value=4.6e-19  Score=135.89  Aligned_cols=152  Identities=20%  Similarity=0.334  Sum_probs=119.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG----KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC   78 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (216)
                      .+.+++.+...+.++.+|||+|||+|..+..+++..+    +..+|+++|+++.+++.|++++...+...+...++.++.
T Consensus        67 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  146 (227)
T 2pbf_A           67 HALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH  146 (227)
T ss_dssp             HHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE
Confidence            4456666654577899999999999999999999865    456999999999999999999887541001125799999


Q ss_pred             ccCCCCC----CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeecee
Q psy14962         79 RDGRTGL----LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFIN  154 (216)
Q Consensus        79 ~d~~~~~----~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (216)
                      +|.....    ...++||+|++....+++++.+.++|+|||++++.++... ...+..+.+ .++.+......++.  |.
T Consensus       147 ~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~--~~  222 (227)
T 2pbf_A          147 KNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIEEDY-TQVLYEITK-KNGKIIKDRLFDVC--FV  222 (227)
T ss_dssp             CCGGGCCHHHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEEETT-EEEEEEEEC-SCC-CEEEEEEEEC--CC
T ss_pred             CChHhcccccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEccCC-ceEEEEEEE-eCCeEEEEEeccEE--EE
Confidence            9987654    3457899999999999999999999999999999987632 255556666 56677777788877  88


Q ss_pred             cccc
Q psy14962        155 PLIN  158 (216)
Q Consensus       155 ~~~~  158 (216)
                      |+.+
T Consensus       223 pl~~  226 (227)
T 2pbf_A          223 SLKK  226 (227)
T ss_dssp             BCCC
T ss_pred             eccC
Confidence            7753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.80  E-value=2.8e-18  Score=130.44  Aligned_cols=143  Identities=32%  Similarity=0.537  Sum_probs=115.6

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  +.++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...+.     .++.+..+|...
T Consensus        67 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~  139 (215)
T 2yxe_A           67 GMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-----DNVIVIVGDGTL  139 (215)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEESCGGG
T ss_pred             HHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCccc
Confidence            34555553  57889999999999999999999876556999999999999999999887653     578999999864


Q ss_pred             CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962         84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN  158 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      .....++||+|++..+++++...+.++|+|||++++.+.+..  ..+..+.+.. ..+......+..  |.|+..
T Consensus       140 ~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~--~~p~~~  209 (215)
T 2yxe_A          140 GYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYL--QRLVLAEKRG-DEIIIKDCGPVA--FVPLVG  209 (215)
T ss_dssp             CCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEESSSS--EEEEEEEEET-TEEEEEEEEEEC--CCBCBS
T ss_pred             CCCCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEEECCCC--cEEEEEEEeC-CEEEEEEeccEE--EEeccc
Confidence            444356899999999999999999999999999999988764  6777776653 356666667666  777654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.80  E-value=2.9e-18  Score=132.29  Aligned_cols=145  Identities=27%  Similarity=0.476  Sum_probs=118.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.|++++...+.     .++.+..+|..
T Consensus        80 ~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~  150 (235)
T 1jg1_A           80 VAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV-----KNVHVILGDGS  150 (235)
T ss_dssp             HHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGG
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEECCcc
Confidence            445556553  67889999999999999999999864  5999999999999999999887553     56899999974


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA  159 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (216)
                      .......+||+|++..++++++..+.++|+|||++++.+++......+..+.+ .++.+.........  |.|+...
T Consensus       151 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~--f~p~~~~  224 (235)
T 1jg1_A          151 KGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRK-TKDGIKIKNHGGVA--FVPLIGE  224 (235)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEE-ETTEEEEEEEEEEC--CCBCBST
T ss_pred             cCCCCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEecCCCccEEEEEEE-eCCeEEEEEeccEE--EEEccCC
Confidence            44333456999999999999999999999999999999988765567777766 35667777778887  8888754

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.78  E-value=2.1e-18  Score=135.07  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=90.9

Q ss_pred             HHhcccCCCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962          8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus         8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (216)
                      .++...+++|.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.|++.|++++...+.    ..++.++++|+.....
T Consensus        62 ~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~----~~~v~~~~~D~~~~~~  137 (261)
T 4gek_A           62 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPVDVIEGDIRDIAI  137 (261)
T ss_dssp             HHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCTTTCCC
T ss_pred             HHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc----CceEEEeecccccccc
Confidence            33444578999999999999999999998764 456999999999999999999887543    3689999999876543


Q ss_pred             CCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         87 HQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                        +.||+|++...+++        ++++++++|||||.+++.....
T Consensus       138 --~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          138 --ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             --CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             --cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence              46999999888764        4578999999999999975443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.76  E-value=2.9e-17  Score=132.13  Aligned_cols=147  Identities=27%  Similarity=0.471  Sum_probs=113.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ...+++.+.  +.++.+|||+|||+|..+..+++..+...+|+++|+++++++.|++++...++     .++.+..+|..
T Consensus        64 ~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-----~~v~~~~~d~~  136 (317)
T 1dl5_A           64 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVCGDGY  136 (317)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGG
T ss_pred             HHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEECChh
Confidence            344555553  57899999999999999999999865345799999999999999999887653     56999999987


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCC-CcceEEEEEecCCCceeeeeeeeeeeceeccccc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSK-SYHRMTVIDRSEDGTHFQKYEISLENFINPLINA  159 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (216)
                      ......++||+|++..+++++.+.+.+.|||||++++.+.+.. ....+..+.+.. ..+.....++..  +.|....
T Consensus       137 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~--~~p~~~~  211 (317)
T 1dl5_A          137 YGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD-PYLVGNYKLETR--FITAGGN  211 (317)
T ss_dssp             GCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEET-TEEEEEEEEECC--CCBCCGG
T ss_pred             hccccCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEeC-CcEEEEEeccEE--EEEccCc
Confidence            6554457899999999999999999999999999999986653 124454444432 356666666655  6666543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.75  E-value=1.6e-18  Score=134.97  Aligned_cols=163  Identities=16%  Similarity=0.197  Sum_probs=111.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.. + .+|+++|+++.+++.|+++..        ..++.++.+|+.......++||+|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHG-A-KKVLGIDLSERMLTEAKRKTT--------SPVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHCC--------CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHhhc--------cCCeEEEEcchhhCCCCCCCeEEE
Confidence            378899999999999999999873 2 299999999999999988754        267999999987655556889999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccc---cccccc
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINA---DEQNDN  165 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  165 (216)
                      ++...+++      +++.+.++|+|||.+++.+.++......       ...+.........  ..+...+   ......
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  183 (253)
T 3g5l_A          113 LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADG-------RQDWYTDETGNKL--HWPVDRYFNESMRTSH  183 (253)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSS-------SCSCEECSSCCEE--EEEECCTTCCCEEEEE
T ss_pred             EEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCc-------cccceeccCCceE--EEEeccccccceEEEe
Confidence            99988765      5688999999999999987765311100       0000000000000  0011000   000111


Q ss_pred             hhhhhcccccCcceEEEeeccccccccccccCCCCchhh
Q psy14962        166 WLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWL  204 (216)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agf~~~~~~  204 (216)
                      |.        ......++++.+++.+.|.++||++.+..
T Consensus       184 ~~--------~~~~~~~~~t~~~~~~~l~~aGF~~~~~~  214 (253)
T 3g5l_A          184 FL--------GEDVQKYHRTVTTYIQTLLKNGFQINSVI  214 (253)
T ss_dssp             ET--------TEEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ec--------cccCccEecCHHHHHHHHHHcCCeeeeee
Confidence            22        12456677799999999999999987644

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.73  E-value=1.9e-16  Score=121.48  Aligned_cols=138  Identities=21%  Similarity=0.364  Sum_probs=103.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++++...       .++.++.+|+.
T Consensus        59 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~-------~~v~~~~~d~~  126 (231)
T 1vbf_A           59 GIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY-------NNIKLILGDGT  126 (231)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGG
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhc-------CCeEEEECCcc
Confidence            345555553  5788999999999999999999883   59999999999999999887652       27899999987


Q ss_pred             CCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL  156 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      ......++||+|++..+++++...+.++|+|||++++.+++.. ...+..+.+ ....+......+..  +.|+
T Consensus       127 ~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~--~~~~  196 (231)
T 1vbf_A          127 LGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGR-VQKLYKVIK-KGNSPSLENLGEVM--FGRI  196 (231)
T ss_dssp             GCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSSS-SEEEEEEEC-CTTSCEEEEEEEEC--CCBC
T ss_pred             cccccCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEEcCCC-ccEEEEEEE-cCCeeEEEEeccEE--EEEc
Confidence            6444457899999999999999999999999999999987664 244444443 23333444444433  4444

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.72  E-value=1.3e-17  Score=128.74  Aligned_cols=109  Identities=20%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+...+.++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++..        ..++.++.+|+....
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~  111 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERGE--------GPDLSFIKGDLSSLP  111 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTTC--------BTTEEEEECBTTBCS
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhcc--------cCCceEEEcchhcCC
Confidence            34444445678899999999999999999987   4599999999999999987642        267999999998766


Q ss_pred             CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ..+++||+|++...+++      ++..+.++|+|||++++...++.
T Consensus       112 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A          112 FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence            56789999999988865      56889999999999999876654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.72  E-value=1.3e-16  Score=124.26  Aligned_cols=110  Identities=23%  Similarity=0.260  Sum_probs=91.0

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  +.++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.|++++...++    ..++.+..+|+..
T Consensus        26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~v~~~~~d~~~   97 (256)
T 1nkv_A           26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIHNDAAG   97 (256)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCCTT
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEECChHh
Confidence            34445443  5788999999999999999999886  34999999999999999999887653    2579999999976


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ... +++||+|++...+++      +++++.++|||||++++..+
T Consensus        98 ~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           98 YVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             CCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             CCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            555 678999999877655      47899999999999999654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.71  E-value=6e-17  Score=124.00  Aligned_cols=112  Identities=22%  Similarity=0.368  Sum_probs=90.5

Q ss_pred             HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .+.++..+. ..++||.+|||+|||+|+.+..+++.+++.++|+++|+++.|++.+++++.+       ..|+..+..|.
T Consensus        63 aa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d~  135 (233)
T 4df3_A           63 AAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGDA  135 (233)
T ss_dssp             HHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESCT
T ss_pred             HHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEec
Confidence            344444443 3478999999999999999999999999989999999999999999887655       35788888887


Q ss_pred             CCCC---CCCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEee
Q psy14962         82 RTGL---LHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        82 ~~~~---~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....   ...+.+|+|++....+.    ++.++.+.|||||++++.+
T Consensus       136 ~~p~~~~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          136 RFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             TCGGGGTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCccccccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            5322   23468999999877765    5678889999999999864

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.71  E-value=1.7e-17  Score=129.53  Aligned_cols=105  Identities=20%  Similarity=0.155  Sum_probs=86.7

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +.+.+......+.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|++           ..++.+.++|++...
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~~~   94 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-----------HPRVTYAVAPAEDTG   94 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-----------CTTEEEEECCTTCCC
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-----------cCCceeehhhhhhhc
Confidence            34444444456789999999999999999987   3599999999999987753           257999999998777


Q ss_pred             CCCCCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .++++||+|++...+++     ++.++.++|||||+|++.+...
T Consensus        95 ~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           95 LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            77889999999998876     5689999999999999877654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.71  E-value=3.8e-16  Score=117.73  Aligned_cols=112  Identities=21%  Similarity=0.225  Sum_probs=92.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+.     .+++++.+|+...
T Consensus        31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~  102 (204)
T 3e05_A           31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVA-----RNVTLVEAFAPEG  102 (204)
T ss_dssp             HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTC-----TTEEEEECCTTTT
T ss_pred             HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEeCChhhh
Confidence            3444443  5788999999999999999999884 457999999999999999999888663     6899999998655


Q ss_pred             CCCCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....++||+|+++....   .+++.+.++|+|||++++.....
T Consensus       103 ~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  145 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVTL  145 (204)
T ss_dssp             CTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred             hhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            54446799999998754   46789999999999999986654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.71  E-value=7.2e-18  Score=133.54  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++    ..++.++.+|+.... ...++||+
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~  139 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGV----SDNMQFIHCAAQDVASHLETPVDL  139 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CC----GGGEEEEESCGGGTGGGCSSCEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC----CcceEEEEcCHHHhhhhcCCCceE
Confidence            34679999999999999999987   45999999999999999999887543    257999999987654 34678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      +++.+.++|||||++++..++.
T Consensus       140 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          140 ILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             EEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence            999988765      5689999999999999987654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.71  E-value=9e-17  Score=125.74  Aligned_cols=104  Identities=20%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.+.+...+.++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++.          .++.++.+|+...
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~  105 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRN----------PDAVLHHGDMRDF  105 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTC
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC----------CCCEEEECChHHC
Confidence            444555545567789999999999999999887   349999999999999998863          3689999998765


Q ss_pred             CCCCCCccEEEecC-CCCc---------hHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLST-YVPE---------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~-~~~~---------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .. .++||+|++.. .+++         +++.+.++|+|||.+++...
T Consensus       106 ~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          106 SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            44 67899999987 6654         35788899999999999754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.71  E-value=5.2e-17  Score=123.29  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=88.8

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+. .+.++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++    .+     ..++.++.+|+..
T Consensus        35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~-----~~~~~~~~~d~~~  101 (218)
T 3ou2_A           35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HG-----LDNVEFRQQDLFD  101 (218)
T ss_dssp             HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GC-----CTTEEEEECCTTS
T ss_pred             HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cC-----CCCeEEEeccccc
Confidence            44556554 3677889999999999999999988   4599999999999999987    22     2679999999876


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      . ...++||+|++...+++        +++.+.++|+|||.+++...++.
T Consensus       102 ~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  150 (218)
T 3ou2_A          102 W-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH  150 (218)
T ss_dssp             C-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             C-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            6 55678999999988755        45788899999999999877663

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.71  E-value=4.8e-16  Score=117.39  Aligned_cols=112  Identities=19%  Similarity=0.238  Sum_probs=91.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...+.    ..++.++.+|+...
T Consensus        46 ~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~  116 (204)
T 3njr_A           46 LTLAALA--PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL----SPRMRAVQGTAPAA  116 (204)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCTTGG
T ss_pred             HHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC----CCCEEEEeCchhhh
Confidence            3444443  578899999999999999999988   45999999999999999999888653    13899999998764


Q ss_pred             CCCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         85 LLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ......||+|+++..... +++.+.++|+|||++++......
T Consensus       117 ~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  158 (204)
T 3njr_A          117 LADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTLE  158 (204)
T ss_dssp             GTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSHH
T ss_pred             cccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCcc
Confidence            444457999999876644 78999999999999999877653

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.71  E-value=2.4e-16  Score=119.88  Aligned_cols=115  Identities=23%  Similarity=0.372  Sum_probs=96.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  +.++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...+.     .++.++.+|+..
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~   99 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-----KNVEVLKSEENK   99 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECBTTB
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeccccc
Confidence            34555553  57889999999999999999999976667999999999999999999887653     579999999876


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ....+++||+|++...+++      +++.+.++|+|||.+++......
T Consensus       100 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          100 IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             CSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            6556678999999988765      56889999999999999765543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.70  E-value=1.7e-17  Score=128.14  Aligned_cols=165  Identities=18%  Similarity=0.223  Sum_probs=110.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++...        .++.+..+|+.......++||+
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~fD~  110 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHLPQDSFDL  110 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCCCTTCEEE
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccCCCCCceE
Confidence            357889999999999999999887 2 23999999999999999876432        4689999998765555678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCCCCcceE-EEEEecCCCceeeeeeeeeeeceeccccccccccch
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSKSYHRM-TVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW  166 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      |++...+++      +++.+.++|+|||++++.++++...... ..+.....+..    .....    ...........|
T Consensus       111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~  182 (243)
T 3bkw_A          111 AYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRR----TWPID----RYLVEGPRKTDW  182 (243)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCE----EEEEC----CTTCCEEECTTH
T ss_pred             EEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCce----EEeec----ccccccceeeee
Confidence            999888755      4688999999999999988665210000 00000001100    00000    000000111224


Q ss_pred             hhhhcccccCcceEEEeeccccccccccccCCCCchhh
Q psy14962        167 LYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWL  204 (216)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agf~~~~~~  204 (216)
                      +..        ....++++.+++.+.|.++||++..+.
T Consensus       183 ~~~--------~~~~~~~t~~~~~~~l~~aGF~~~~~~  212 (243)
T 3bkw_A          183 LAK--------GVVKHHRTVGTTLNALIRSGFAIEHVE  212 (243)
T ss_dssp             HHH--------SCCEEECCHHHHHHHHHHTTCEEEEEE
T ss_pred             ccC--------ceEEEeccHHHHHHHHHHcCCEeeeec
Confidence            322        244566789999999999999987654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.70  E-value=1.4e-16  Score=118.12  Aligned_cols=112  Identities=18%  Similarity=0.191  Sum_probs=86.0

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+...+...+.++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|++++...++     .++.++..+....
T Consensus        11 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~~~~~l   82 (185)
T 3mti_A           11 MSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-----ENTELILDGHENL   82 (185)
T ss_dssp             HHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-----CCEEEEESCGGGG
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCcHHHH
Confidence            334445556788999999999999999999987   45999999999999999999988653     6889998665532


Q ss_pred             C-CCCCCccEEEecCCC-C--------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 L-LHQAPFDAIYLSTYV-P--------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~-~~~~~~D~i~~~~~~-~--------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      . ..+++||+|+++.+. +              ..+..+.++|||||++++.++..
T Consensus        83 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           83 DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             GGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             HhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            1 225689999987322 2              13478889999999999977643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.70  E-value=2.2e-16  Score=123.87  Aligned_cols=105  Identities=19%  Similarity=0.158  Sum_probs=89.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|..+..+++.  +..+|+|+|+++.+++.|++++...++    .+++.++.+|+.......++||
T Consensus        43 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD  116 (267)
T 3kkz_A           43 NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGL----QNRVTGIVGSMDDLPFRNEELD  116 (267)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCCCTTCEE
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCC----CcCcEEEEcChhhCCCCCCCEE
Confidence            4578899999999999999999988  356999999999999999999888654    3569999999976655568899


Q ss_pred             EEEecCCCCc-----hHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE-----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++..++++     +++.+.++|||||++++....
T Consensus       117 ~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          117 LIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEee
Confidence            9999988765     468999999999999997643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.70  E-value=1.1e-16  Score=119.99  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=89.1

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~   91 (216)
                      .+.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|++++...+.    ..++.++.+|+.... ...++|
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~f   94 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL----IDRVTLIKDGHQNMDKYIDCPV   94 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC----GGGEEEECSCGGGGGGTCCSCE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHhhhccCCc
Confidence            467899999999999999999999976667999999999999999999887552    257999999976443 234789


Q ss_pred             cEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|+++.++               ..++..+.++|+|||++++.+..
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            999998765               13678999999999999987654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.70  E-value=2.5e-17  Score=126.41  Aligned_cols=109  Identities=23%  Similarity=0.276  Sum_probs=88.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .++++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++....+.......++.+...|........++||
T Consensus        27 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           27 YLQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCcee
Confidence            3568899999999999999999987   4599999999999999999877654322223468999999886665678899


Q ss_pred             EEEecCCCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|++...+++         +++.+.++|+|||++++.....
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            9999887643         4578889999999999986654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.70  E-value=9.4e-17  Score=121.18  Aligned_cols=105  Identities=12%  Similarity=0.012  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCC-------CCCCCCCeEEEeccCCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP-------DLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~   86 (216)
                      +.++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|+++......       ......+++++++|+.....
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA   96 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc
Confidence            467899999999999999999987   45999999999999999887532000       00002578999999876554


Q ss_pred             CC-CCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         87 HQ-APFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~-~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+ ++||+|++...+.+        ++++++++|||||++++.+
T Consensus        97 ~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           97 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            33 68999998776644        3578899999999855543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.69  E-value=3.3e-16  Score=121.92  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=89.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++...++    ..++.++.+|+.......++||
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD  116 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC----ADRVKGITGSMDNLPFQNEELD  116 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSCSSCTTCEE
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhCCCCCCCEE
Confidence            457888999999999999999999853  3999999999999999999988664    2569999999976655668899


Q ss_pred             EEEecCCCCc-----hHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE-----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++...+++     +++.+.++|+|||++++....
T Consensus       117 ~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          117 LIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            9999988866     568899999999999997643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.69  E-value=3.3e-16  Score=122.33  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  ..++.+|||+|||+|.++..+++..   .+|+++|+|+.+++.|++++...+     ..++.+..+|+..
T Consensus        27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~-----~~~v~~~~~d~~~   96 (260)
T 1vl5_A           27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQ   96 (260)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-C
T ss_pred             HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEecHHh
Confidence            45556654  4688999999999999999998873   399999999999999999988755     3579999999887


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ....+++||+|++...+++      ++.++.++|||||++++...
T Consensus        97 l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           97 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            6556688999999988865      56899999999999999643

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.69  E-value=6.5e-16  Score=121.85  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=84.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHH-HHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCV-FAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~-l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+.++.+|||+|||+|.++.. +++.  ++++|+++|+++++++.|++++.+.++     .+++++++|+....  +++|
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gIDis~~~l~~Ar~~~~~~gl-----~~v~~v~gDa~~l~--d~~F  189 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHV--YGMRVNVVEIEPDIAELSRKVIEGLGV-----DGVNVITGDETVID--GLEF  189 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHT--TCCEEEEEESSHHHHHHHHHHHHHHTC-----CSEEEEESCGGGGG--GCCC
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEECchhhCC--CCCc
Confidence            478999999999999887644 4543  367999999999999999999988663     68999999987542  5789


Q ss_pred             cEEEecCCCC---chHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYVP---EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|++....+   .+++++.++|||||++++...+
T Consensus       190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          190 DVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             SEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            9999877665   4789999999999999997644

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.69  E-value=6.9e-16  Score=113.47  Aligned_cols=112  Identities=18%  Similarity=0.200  Sum_probs=89.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.|++++...+.    ..++ ++.+|....
T Consensus        16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~~~~d~~~~   87 (178)
T 3hm2_A           16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGV----SDRI-AVQQGAPRA   87 (178)
T ss_dssp             HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTC----TTSE-EEECCTTGG
T ss_pred             HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCC----CCCE-EEecchHhh
Confidence            3444443  5678899999999999999999875 457999999999999999999887553    2378 888887543


Q ss_pred             CCCC-CCccEEEecCCCCc--hHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQ-APFDAIYLSTYVPE--IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~-~~~D~i~~~~~~~~--~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .... ++||+|++...+++  +++.+.+.|+|||++++.....
T Consensus        88 ~~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A           88 FDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             GGGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             hhccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeecc
Confidence            3322 78999999988876  8899999999999999977654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.69  E-value=6.9e-16  Score=123.15  Aligned_cols=102  Identities=17%  Similarity=0.120  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.|+++....++    ..++.+..+|+...   .++||+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~---~~~fD~  140 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWEEF---DEPVDR  140 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCC----SSCEEEEECCGGGC---CCCCSE
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECCHHHc---CCCccE
Confidence            57889999999999999999999864  5999999999999999999888653    24799999998654   678999


Q ss_pred             EEecCCCCch---------------HHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPEI---------------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~~---------------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...++++               +..+.++|||||++++.....
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence            9998887555               578899999999999976544

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.68  E-value=7.8e-16  Score=120.90  Aligned_cols=103  Identities=23%  Similarity=0.303  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..  +.+|+++|+|+.+++.++++....++    ..++.++.+|+......+++||+
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~  132 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGL----ANRVTFSYADAMDLPFEDASFDA  132 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCSCTTCEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEECccccCCCCCCCccE
Confidence            5688999999999999999999875  45999999999999999999887553    35799999998876555678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++      +++.+.++|||||++++...
T Consensus       133 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          133 VWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             EEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            999988766      46889999999999999754

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.68  E-value=9.4e-16  Score=121.99  Aligned_cols=114  Identities=16%  Similarity=0.075  Sum_probs=93.4

Q ss_pred             HHHHHHhc--ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          4 ARIIELLE--PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         4 ~~~~~~l~--~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      ..+++.+.  ..+.++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.|+++....++    ..++.++.+|+
T Consensus        68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~  141 (297)
T 2o57_A           68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGSF  141 (297)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECCT
T ss_pred             HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC----CcceEEEEcCc
Confidence            34445541  1357889999999999999999998863  4999999999999999999877654    35799999999


Q ss_pred             CCCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ...+..+++||+|++...+++      ++.++.++|||||++++..+.
T Consensus       142 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  189 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM  189 (297)
T ss_dssp             TSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence            876656678999999988765      468999999999999997653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.67  E-value=3e-16  Score=121.08  Aligned_cols=108  Identities=26%  Similarity=0.313  Sum_probs=86.7

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ..+.+...+.++.+|||+|||+|..+..+++.    .+++++|+++.+++.|+++....+      .++.+..+|+....
T Consensus        23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~   92 (243)
T 3d2l_A           23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMRELE   92 (243)
T ss_dssp             HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGGGCC
T ss_pred             HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChhhcC
Confidence            44444445677899999999999999988876    499999999999999999887643      57899999987554


Q ss_pred             CCCCCccEEEecC-CCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLST-YVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~-~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .. ++||+|++.. .+++         +++.+.++|+|||.+++.++++
T Consensus        93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  140 (243)
T 3d2l_A           93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP  140 (243)
T ss_dssp             CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence            33 6899999875 4433         4578889999999999987765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.67  E-value=8.2e-16  Score=116.64  Aligned_cols=100  Identities=22%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLHQAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~   90 (216)
                      +.++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+....       ..++.++.+|+...   ....++
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~  126 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIVEK  126 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTCCC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCchhhcccccc
Confidence            56889999999999999999999865 56999999999988776666554       25788888887642   112368


Q ss_pred             ccEEEecCCCCc----hHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPE----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~  121 (216)
                      ||+|+++...+.    ++.++.++|||||++++..
T Consensus       127 fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          127 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999999865443    3678899999999999975

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.67  E-value=1.3e-15  Score=116.80  Aligned_cols=113  Identities=21%  Similarity=0.315  Sum_probs=85.0

Q ss_pred             HHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          5 RIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         5 ~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      .++..+. ..+++|.+|||+|||+|..+..+++.+++.++|+++|+++.++....+....       ..|+.++.+|+..
T Consensus        64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-------r~nv~~i~~Da~~  136 (232)
T 3id6_C           64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-------RPNIFPLLADARF  136 (232)
T ss_dssp             HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-------CTTEEEEECCTTC
T ss_pred             HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCeEEEEccccc
Confidence            3444443 2467999999999999999999999988788999999999987655554443       2579999999864


Q ss_pred             CCC---CCCCccEEEecCCCCch----HHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLL---HQAPFDAIYLSTYVPEI----PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~---~~~~~D~i~~~~~~~~~----~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...   ..++||+|+++.+.+..    ...+.+.|||||++++++.+.
T Consensus       137 ~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik~~  184 (232)
T 3id6_C          137 PQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKAR  184 (232)
T ss_dssp             GGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             chhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEccC
Confidence            321   13589999999887553    244556999999999986543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.67  E-value=1e-15  Score=115.96  Aligned_cols=101  Identities=23%  Similarity=0.233  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++ +|||+|||+|..+..+++.  ++.+++++|+++.+++.|++++...+.    ..++.++.+|+.......++||+|
T Consensus        43 ~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~v  115 (219)
T 3dlc_A           43 TAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANL----NDRIQIVQGDVHNIPIEDNYADLI  115 (219)
T ss_dssp             CEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECBTTBCSSCTTCEEEE
T ss_pred             CCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccc----cCceEEEEcCHHHCCCCcccccEE
Confidence            445 9999999999999999988  456999999999999999999888653    257999999998766566889999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++...+++      +++.+.++|+|||.+++...
T Consensus       116 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          116 VSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence            99988765      56899999999999999753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.67  E-value=1e-15  Score=122.83  Aligned_cols=105  Identities=19%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..  +.+|+|+|+++.+++.|++++...++    ..++.++.+|+.......++||+
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~  188 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRI----DDHVRSRVCNMLDTPFDKGAVTA  188 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCCCTTCEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECChhcCCCCCCCEeE
Confidence            5688999999999999999999886  35999999999999999999988654    25799999999866555688999


Q ss_pred             EEecCCCCc-----hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE-----IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++     ++..+.++|||||++++..+..
T Consensus       189 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          189 SWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            999877654     5688999999999999875433

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.66  E-value=2.6e-15  Score=114.06  Aligned_cols=104  Identities=16%  Similarity=0.233  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      .++.+|||+|||+|.++..+++.. ++.+++|+|+++.+++.|++++...++     .++.++.+|+....  ...++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~D  113 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDYFEDGEID  113 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGTSCTTCCS
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC-----CCEEEEeCCHHHHHhhcCCCCCC
Confidence            457899999999999999999885 467999999999999999999887653     68999999987533  3456899


Q ss_pred             EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+.+              .++..+.++|+|||.+++.+.+.
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  159 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR  159 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            999987764              36789999999999999976543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.66  E-value=1.3e-15  Score=117.55  Aligned_cols=109  Identities=21%  Similarity=0.237  Sum_probs=91.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++...+.     .++.+..+|+...
T Consensus        12 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~   81 (239)
T 1xxl_A           12 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQGTAESL   81 (239)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEECBTTBC
T ss_pred             hHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC-----CCeEEEecccccC
Confidence            3455554  6789999999999999999998873   4999999999999999999887653     5799999998766


Q ss_pred             CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ...+++||+|++...+++      ++.++.++|+|||++++....
T Consensus        82 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            555678999999988755      468899999999999997543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.66  E-value=3.2e-16  Score=117.88  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++.          .++.++.+|+.......++||+|++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC----------TTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccccccCCCCeEEEEe
Confidence            789999999999999999887   449999999999999998762          4689999998765555688999999


Q ss_pred             cCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         97 STYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        97 ~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...+++        +++.+.++|+|||.+++.+....
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          109 WYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             ESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             hhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            887655        45888999999999999876664

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.66  E-value=2.4e-15  Score=117.09  Aligned_cols=106  Identities=29%  Similarity=0.445  Sum_probs=91.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.+++..+++++|+++.+++.|++++...+.    .+++.+..+|+... ...++||+
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~D~  165 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF----DDRVTIKLKDIYEG-IEEENVDH  165 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC----TTTEEEECSCGGGC-CCCCSEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC----CCceEEEECchhhc-cCCCCcCE
Confidence            67899999999999999999999977778999999999999999999988764    24599999998754 34567999


Q ss_pred             EEecCCCCc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+... ++..+.++|+|||++++..+..
T Consensus       166 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          166 VILDLPQPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             EEECSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             EEECCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence            999877654 7899999999999999987654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.65  E-value=2.9e-16  Score=119.68  Aligned_cols=155  Identities=19%  Similarity=0.139  Sum_probs=105.7

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-   84 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-   84 (216)
                      +++.+.  ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++           .++.+...|+... 
T Consensus        44 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~  107 (227)
T 3e8s_A           44 ILLAIL--GRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-----------GAGEVHLASYAQLA  107 (227)
T ss_dssp             HHHHHH--HTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-----------CSSCEEECCHHHHH
T ss_pred             HHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-----------cccccchhhHHhhc
Confidence            444443  246789999999999999999887   45999999999999999876           3466777776432 


Q ss_pred             --C-CCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecc
Q psy14962         85 --L-LHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL  156 (216)
Q Consensus        85 --~-~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                        . ....+||+|++...++     .+++.+.++|+|||++++.+.++.....         ..+... .....      
T Consensus       108 ~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---------~~~~~~-~~~~~------  171 (227)
T 3e8s_A          108 EAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVAD---------GDYQDG-WREES------  171 (227)
T ss_dssp             TTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCT---------TCCSCE-EEEEC------
T ss_pred             ccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCc---------cccccc-cchhh------
Confidence              2 2345699999988775     3678999999999999999887753110         000000 00000      


Q ss_pred             ccccccccchhhhhcccccCcceEEEeeccccccccccccCCCCchhh
Q psy14962        157 INADEQNDNWLYQQSRSEDGTHFQKYEISLENFINPLINADEQNDNWL  204 (216)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agf~~~~~~  204 (216)
                               |....   ........+.++.+++.+.|.++||++.+..
T Consensus       172 ---------~~~~~---~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  207 (227)
T 3e8s_A          172 ---------FAGFA---GDWQPMPWYFRTLASWLNALDMAGLRLVSLQ  207 (227)
T ss_dssp             ---------CTTSS---SCCCCEEEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             ---------hhccc---cCcccceEEEecHHHHHHHHHHcCCeEEEEe
Confidence                     11000   0001244566789999999999999988654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.65  E-value=4.8e-16  Score=123.90  Aligned_cols=104  Identities=20%  Similarity=0.255  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..  ...++.++.+|+..... .++||+|+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~v~~~~~d~~~~~~-~~~fD~v~  155 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPAD--VRDRCTLVQGDMSAFAL-DKRFGTVV  155 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHH--HHTTEEEEECBTTBCCC-SCCEEEEE
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccc--cccceEEEeCchhcCCc-CCCcCEEE
Confidence            4459999999999999999987   458999999999999999988763200  00479999999986544 67899998


Q ss_pred             ec-CCCC--------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LS-TYVP--------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~-~~~~--------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +. ..++        .+++.+.++|+|||++++.++++.
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          156 ISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             ECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             ECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            64 2222        356889999999999999988874

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.65  E-value=2.2e-15  Score=114.99  Aligned_cols=111  Identities=21%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.+.+...+.++.+|||+|||+|..+..+++.. +  +++++|+++.+++.|+++....+      .++.++.+|+...
T Consensus        27 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~   97 (227)
T 1ve3_A           27 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKL   97 (227)
T ss_dssp             HHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSC
T ss_pred             HHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC------CCceEEECchhcC
Confidence            3444454456678899999999999999888873 3  99999999999999999887643      5789999998765


Q ss_pred             CCCCCCccEEEecCC--CCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTY--VPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~--~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....++||+|++..+  +.+      +++.+.++|+|||.+++..++.
T Consensus        98 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A           98 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            545678999999888  433      4588899999999999987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.65  E-value=2.6e-15  Score=114.11  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.+.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...++......++.++.+|+...
T Consensus        20 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           20 GVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred             HHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence            4444443  3578899999999999999999874 346999999999999999998765432100012799999998655


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ....++||+|++...+++        +++.+.++|||||.+++...
T Consensus        97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            444578999999988764        45788899999997776543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.65  E-value=5.7e-16  Score=121.00  Aligned_cols=101  Identities=26%  Similarity=0.261  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.|+++...       ..++.++.+|+.......++||+
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~  123 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDILTKEFPENNFDL  123 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS-------CTTEEEEECCTTTCCCCTTCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEECccccCCCCCCcEEE
Confidence            5678899999999999999999986  45999999999999999887543       15799999999876556789999


Q ss_pred             EEecCCCCch--------HHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPEI--------PYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...++++        ++.+.++|+|||.+++....
T Consensus       124 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            9999888775        58899999999999997543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.65  E-value=1.2e-15  Score=120.73  Aligned_cols=111  Identities=16%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+. .+.++.+|||+|||+|..+..+++..+.+.+|+++|+++.+++.|++++...+      .++.+..+|+...
T Consensus        12 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~~d~~~~   84 (284)
T 3gu3_A           12 FLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDATEI   84 (284)
T ss_dssp             HHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEESCTTTC
T ss_pred             HHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEcchhhc
Confidence            3444443 45688999999999999999999886445799999999999999999887633      4799999999865


Q ss_pred             CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .. .++||+|++...+++      +++++.++|+|||++++..++
T Consensus        85 ~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           85 EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             Cc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            44 468999999888755      568899999999999998776

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.64  E-value=7.2e-16  Score=119.77  Aligned_cols=100  Identities=15%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.++++...       ..++.++.+|+.......++||+
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccHHHCCCCCCCeEE
Confidence            3578899999999999999998885  34899999999999999987644       15789999998765555678999


Q ss_pred             EEecCCCCch--------HHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPEI--------PYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...++++        +..+.++|+|||++++..+
T Consensus       162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9999887654        5788899999999999765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.64  E-value=4.2e-15  Score=115.75  Aligned_cols=113  Identities=25%  Similarity=0.342  Sum_probs=94.7

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~   83 (216)
                      .+++.+.  +.++.+|||+|||+|..+..+++.++++.+|+++|+++.+++.|++++... +     ..++.+..+|+..
T Consensus        87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~  159 (258)
T 2pwy_A           87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VENVRFHLGKLEE  159 (258)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCCEEEEESCGGG
T ss_pred             HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCEEEEECchhh
Confidence            3444443  678999999999999999999998776679999999999999999998875 4     3689999999876


Q ss_pred             CCCCCCCccEEEecCCCC-chHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .....++||+|+++.+.. .++..+.++|+|||++++.++..
T Consensus       160 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          160 AELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             cCCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            534456899999987655 57899999999999999988765

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.64  E-value=1.8e-15  Score=116.23  Aligned_cols=102  Identities=16%  Similarity=0.126  Sum_probs=85.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.|++++..       ..++.++.+|+...... ++||+
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~  112 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKYDFE-EKYDM  112 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCTTTCCCC-SCEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCchhccCCC-CCceE
Confidence            4678899999999999999999885 467999999999999999988654       23799999998765554 78999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++        +++++.++|+|||.+++.....
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            999988754        4578889999999999976554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.64  E-value=3.7e-15  Score=117.58  Aligned_cols=114  Identities=27%  Similarity=0.368  Sum_probs=94.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-C-CCCCCCCCeEEEeccCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-R-PDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~-~~~~~~~~~~~~~~d~~   82 (216)
                      .++..+.  +.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++... + +    ..++.+..+|+.
T Consensus        90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~----~~~v~~~~~d~~  163 (280)
T 1i9g_A           90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP----PDNWRLVVSDLA  163 (280)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC----CTTEEEECSCGG
T ss_pred             HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC----CCcEEEEECchH
Confidence            3444443  678999999999999999999998766679999999999999999998775 3 1    267999999987


Q ss_pred             CCCCCCCCccEEEecCCCC-chHHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ......++||+|+++.+.. .++..+.++|+|||++++.+++.
T Consensus       164 ~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          164 DSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             GCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             hcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            6554467899999987655 57899999999999999988765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.64  E-value=1.8e-15  Score=115.17  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=86.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.+.+.  ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...++......++.++.+|+...
T Consensus        20 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           20 TVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            3444443  2567899999999999999999874 346999999999999999998765442100012799999998655


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ....++||+|++...+++        +++.+.++|||||.++....
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  142 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN  142 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence            545578999999888755        45678899999996665443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.64  E-value=3.3e-15  Score=118.29  Aligned_cols=102  Identities=17%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..+  .+|+|+|+|+.+++.+++++...+.    ..++.+..+|+....   ++||+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~---~~fD~  132 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGWEQFD---EPVDR  132 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCGGGCC---CCCSE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC----CCCeEEEECChhhCC---CCeeE
Confidence            56889999999999999999997764  4999999999999999999876543    257999999986432   68999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++        +++.+.++|||||.+++.....
T Consensus       133 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             EEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             EEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            999877654        3578899999999999976544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.64  E-value=9.5e-16  Score=116.91  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D   92 (216)
                      ++.+|||||||+|..+..+++.. ++..|+|+|+++.+++.|++++...+     ..|+.++.+|+...   ....++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----l~nv~~~~~Da~~~l~~~~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEG-----LSNLRVMCHDAVEVLHKMIPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTT-----CSSEEEECSCHHHHHHHHSCTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhC-----CCcEEEEECCHHHHHHHHcCCCChh
Confidence            57899999999999999999874 56799999999999999999988765     36899999997643   13467899


Q ss_pred             EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .|++..+.+              .++..+.++|||||++++.+....
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~  154 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP  154 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            999984432              267899999999999999886653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.64  E-value=2.6e-15  Score=118.12  Aligned_cols=105  Identities=22%  Similarity=0.272  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.. ++.+++++|+++.+++.+++++...+     ..++.++..|........++||+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~  108 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNG-----IKNVKFLQANIFSLPFEDSSFDH  108 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGCCSCTTCEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----CCCcEEEEcccccCCCCCCCeeE
Confidence            4688999999999999999999884 46799999999999999999988755     36799999998866656789999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      ++..+.++|+|||++++..+..
T Consensus       109 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          109 IFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             EEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999988755      5688999999999999977554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.64  E-value=3e-15  Score=111.45  Aligned_cols=104  Identities=16%  Similarity=0.073  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      .++.+|||+|||+|.++..++..  ...+|+++|+++.+++.|++++...+.     .+++++++|+....  ...++||
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~fD  115 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGL-----SGATLRRGAVAAVVAAGTTSPVD  115 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTC-----SCEEEEESCHHHHHHHCCSSCCS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEccHHHHHhhccCCCcc
Confidence            47889999999999999988775  234899999999999999999988652     68999999986432  1256899


Q ss_pred             EEEecCCCCc-------hHHHHHh--cCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPE-------IPYSILL--QLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~-------~~~~~~~--~L~~gG~lv~~~~~~~  125 (216)
                      +|+++.++..       .+..+.+  +|+|||.+++......
T Consensus       116 ~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          116 LVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             EEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            9999988765       3467777  9999999999776543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.64  E-value=2.7e-15  Score=113.16  Aligned_cols=113  Identities=19%  Similarity=0.139  Sum_probs=88.4

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+. ...++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.+++++...+      .++.+..+|+..
T Consensus        12 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~   82 (209)
T 2p8j_A           12 YRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDIRK   82 (209)
T ss_dssp             HHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCTTS
T ss_pred             HHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECchhh
Confidence            34445444 45678999999999999855444442  4599999999999999999887654      568899999876


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .....++||+|++...+++        +++.+.++|+|||.+++...+..
T Consensus        83 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  132 (209)
T 2p8j_A           83 LPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK  132 (209)
T ss_dssp             CCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             CCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            5555678999999877655        34788899999999999876653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.64  E-value=1.7e-15  Score=117.99  Aligned_cols=104  Identities=19%  Similarity=0.123  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----------hCCC--CCCCCCeEEEeccCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR----------IRPD--LLNDGRLHLRCRDGR   82 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~----------~~~~--~~~~~~~~~~~~d~~   82 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|+++...          .+..  .....+++++++|+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            47889999999999999999987   45999999999999999766421          0000  001257999999997


Q ss_pred             CCCCCC-CCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         83 TGLLHQ-APFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        83 ~~~~~~-~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...... ++||+|++...+.+        ++..+.++|||||++++.+
T Consensus       144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            655433 78999998766543        4578899999999997543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.5e-15  Score=118.91  Aligned_cols=103  Identities=13%  Similarity=0.079  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCCCCCCCC-----
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGRTGLLHQ-----   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~-----   88 (216)
                      .++.+|||+|||+|..+..+++...+..+|+|+|+|+.+++.|++++... +    ...++.++++|+.......     
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~  110 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD----TYKNVSFKISSSDDFKFLGADSVD  110 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-----CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC----CCCceEEEEcCHHhCCcccccccc
Confidence            57899999999999999999986545679999999999999999998774 1    1368999999998655444     


Q ss_pred             -CCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEee
Q psy14962         89 -APFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 -~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~  121 (216)
                       ++||+|++...+++     ++.++.++|+|||.+++..
T Consensus       111 ~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (299)
T 3g5t_A          111 KQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG  149 (299)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEe
Confidence             78999999988755     5688999999999998843

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.63  E-value=1.8e-15  Score=114.46  Aligned_cols=112  Identities=19%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.+.+...+.++.+|||+|||+|..+..+++.. + .+++++|+++.+++.++++...       ..++.++.+|+...
T Consensus        31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~~  101 (215)
T 2pxx_A           31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGG-F-PNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKL  101 (215)
T ss_dssp             HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT-C-CCEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTSC
T ss_pred             HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC-C-CcEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhcC
Confidence            4556666667889999999999999999998873 2 2899999999999999987653       25789999998765


Q ss_pred             CCCCCCccEEEecCCC---------------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         85 LLHQAPFDAIYLSTYV---------------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~---------------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ....++||+|++..++                     ..++..+.++|+|||.+++..+...
T Consensus       102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            5556789999987654                     2356788899999999999887663

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.63  E-value=4.6e-15  Score=113.71  Aligned_cols=104  Identities=20%  Similarity=0.284  Sum_probs=85.7

Q ss_pred             cCCCCCeEEEEcCC-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCCC
Q psy14962         13 KIQEGAKVLDIGSG-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~   90 (216)
                      .+.++.+|||+||| +|..+..+++..  +.+|+++|+++.+++.|++++...+      .++.++.+|+... ...+++
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~  123 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN------SNVRLVKSNGGIIKGVVEGT  123 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT------CCCEEEECSSCSSTTTCCSC
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC------CCcEEEeCCchhhhhcccCc
Confidence            45789999999999 999999999886  4599999999999999999998854      2789999996422 223478


Q ss_pred             ccEEEecCCC-------------------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYV-------------------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|+++.++                         ..+++.+.++|+|||++++.+++.
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            9999998775                         235688889999999999976554

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.63  E-value=3.6e-15  Score=113.32  Aligned_cols=104  Identities=15%  Similarity=0.182  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      .++.+|||+|||+|.++..+++.. ++.+++|+|+++.+++.|++++...+     ..++.++.+|+....  ...++||
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~-----~~nv~~~~~d~~~l~~~~~~~~~d  110 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVK  110 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcC-----CCCEEEEeCCHHHHHhhcCcCCcC
Confidence            357899999999999999999884 56799999999999999999988755     368999999986532  3456899


Q ss_pred             EEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .|++..+.+              .++..+.++|+|||.+++.+.+.
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~  156 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  156 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            998875532              35788999999999999987544

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.63  E-value=2e-15  Score=114.59  Aligned_cols=100  Identities=20%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++...       ..++.++.+|+.... ..++||+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~-~~~~fD~  117 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQFS-TAELFDL  117 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTCC-CSCCEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhCC-CCCCccE
Confidence            456789999999999999999887   35999999999999999988755       247999999987665 4678999


Q ss_pred             EEecCCCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++         ++..+.++|+|||.+++.++..
T Consensus       118 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          118 IVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             EEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            999887754         3578889999999999976544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.63  E-value=9.4e-16  Score=117.19  Aligned_cols=102  Identities=10%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCccEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFDAI   94 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~i   94 (216)
                      +.+|||+|||+|+.+..+++.++++++|+++|+++++++.|++++...++   ...+++++.+|+.....  ..++||+|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY---SPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC---CGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            44999999999999999999876678999999999999999999988663   11479999998754322  25789999


Q ss_pred             EecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      +++.....   +++.+.++|+|||++++..
T Consensus       134 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          134 FGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             EECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             EEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence            99877654   5688899999999999853

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.63  E-value=3.6e-15  Score=116.27  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             HHHHHh---cccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          5 RIIELL---EPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         5 ~~~~~l---~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .+++.+   ...+.++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.+++++ ...     ..++.+..+|+
T Consensus        25 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~-----~~~~~~~~~d~   95 (263)
T 2yqz_A           25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGV-----DRKVQVVQADA   95 (263)
T ss_dssp             HHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTS-----CTTEEEEESCT
T ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hcc-----CCceEEEEccc
Confidence            344444   334678899999999999999999887   359999999999999999886 211     36799999998


Q ss_pred             CCCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEe
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~  120 (216)
                      ......+++||+|++...+++      ++.++.++|+|||.+++.
T Consensus        96 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           96 RAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             TSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            765555678999999988765      458889999999999986

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.62  E-value=1.3e-15  Score=117.68  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.. ..++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|+++..         .++.++.+|+..
T Consensus        31 ~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~---------~~v~~~~~d~~~   97 (250)
T 2p7i_A           31 PFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK---------DGITYIHSRFED   97 (250)
T ss_dssp             HHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGG
T ss_pred             HHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHh---CCcEEEEeCCHHHHHHHHHhhh---------CCeEEEEccHHH
Confidence            445566653 346789999999999999999876   2389999999999999987642         268999999876


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHH-hcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------IPYSIL-LQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------~~~~~~-~~L~~gG~lv~~~~~~~  125 (216)
                      . ..+++||+|++...+++      +++++. ++|||||++++.+++..
T Consensus        98 ~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A           98 A-QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             C-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             c-CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence            5 34678999999988865      568999 99999999999887664

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.62  E-value=8.1e-15  Score=110.07  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=85.0

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++ +|||+|||+|..+..+++.   +.+++++|+++.+++.|+++....+      .++.+..+|+.......++||
T Consensus        27 ~~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD   96 (202)
T 2kw5_A           27 QIPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLADFDIVADAWE   96 (202)
T ss_dssp             HSCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTTTBSCCTTTCS
T ss_pred             hCCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChhhcCCCcCCcc
Confidence            35677 9999999999999998876   4599999999999999999987754      378999999876555567899


Q ss_pred             EEEecCCCC------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|++.....      .++..+.++|+|||.+++......
T Consensus        97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           97 GIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            999864332      256888999999999999887765

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.62  E-value=5.6e-15  Score=113.59  Aligned_cols=105  Identities=24%  Similarity=0.239  Sum_probs=82.7

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +.+.+.....++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++.          .++.++.+|+....
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~   96 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFR   96 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC----------TTCEEEECCTTTCC
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC----------CCCEEEECCHHHcc
Confidence            344444444678899999999999999999884   28999999999999998763          45889999987654


Q ss_pred             CCCCCccEEEecC-CCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLST-YVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~-~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      . .++||+|++.. .+++         +++.+.++|+|||.+++..+..
T Consensus        97 ~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A           97 L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            4 56899999543 4433         4578889999999999986544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.62  E-value=7.7e-15  Score=118.88  Aligned_cols=119  Identities=26%  Similarity=0.334  Sum_probs=91.4

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC----CCCC--CCCCeEEE
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR----PDLL--NDGRLHLR   77 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----~~~~--~~~~~~~~   77 (216)
                      +.+++.+.  +.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++...+    +...  ...++.+.
T Consensus        95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            44555553  6789999999999999999999987666799999999999999999887532    0000  02579999


Q ss_pred             eccCCCCC--CCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         78 CRDGRTGL--LHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        78 ~~d~~~~~--~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+|+....  ...++||+|+++.+.++ ++..+.++|+|||.+++..+..
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             ESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             ECChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            99987643  23467999999877665 5799999999999999877654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=4.6e-15  Score=115.26  Aligned_cols=105  Identities=20%  Similarity=0.277  Sum_probs=86.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~   90 (216)
                      ..++.+|||+|||+|..+..+++.++++++|+++|+++.+++.|++++...++    ..++.++.+|+....   ...++
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~l~~~~~~~~  136 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV----DQRVTLREGPALQSLESLGECPA  136 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHTCCSCCC
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHhcCCCCC
Confidence            45788999999999999999999875467999999999999999999988664    257999999975321   12358


Q ss_pred             ccEEEecCCCCc---hHHHHHhcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ||+|+++.....   +++.+.++|||||++++...
T Consensus       137 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          137 FDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             eEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            999999887654   56888999999999988643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.62  E-value=5.2e-15  Score=121.63  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...+      .+++++.+|+.......++||+|
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~------~~v~~~~~D~~~~~~~~~~fD~I  302 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANA------LKAQALHSDVDEALTEEARFDII  302 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTTTTSCTTCCEEEE
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcC------CCeEEEEcchhhccccCCCeEEE
Confidence            36889999999999999999987   4599999999999999999998865      34899999988665555789999


Q ss_pred             EecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++.++++           ++..+.++|+|||.+++.+...
T Consensus       303 i~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          303 VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             EECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             EECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            99988764           4578889999999999987654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=1e-14  Score=108.36  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=90.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC--eEEEeccC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR--LHLRCRDG   81 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~d~   81 (216)
                      ..+++.+.  ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...+.     .+  +.++.+|+
T Consensus        42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~  111 (194)
T 1dus_A           42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNL-----DNYDIRVVHSDL  111 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC-----TTSCEEEEECST
T ss_pred             HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECch
Confidence            34455553  457889999999999999999887   45999999999999999999887553     44  99999998


Q ss_pred             CCCCCCCCCccEEEecCCCCc-------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPE-------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .... ..++||+|+++.++++       +++.+.++|+|||.+++.+++..
T Consensus       112 ~~~~-~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          112 YENV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             TTTC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             hccc-ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            7643 3568999999988653       45788899999999999887763

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.62  E-value=7.9e-15  Score=109.60  Aligned_cols=107  Identities=19%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...+.     .++.+..+|+...
T Consensus        23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~   92 (199)
T 2xvm_A           23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENL-----DNLHTRVVDLNNL   92 (199)
T ss_dssp             HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC-----TTEEEEECCGGGC
T ss_pred             HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCC-----CCcEEEEcchhhC
Confidence            3444443  346789999999999999999987   45999999999999999999877652     4799999998765


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .. .++||+|++...+++        +++.+.++|+|||.+++...
T Consensus        93 ~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           93 TF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            44 678999999887654        45788999999999877554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.62  E-value=5.9e-15  Score=116.33  Aligned_cols=105  Identities=20%  Similarity=0.251  Sum_probs=89.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-RPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      +.++.+|||+|||+|..+..+++...++.+|+++|+++.+++.|++++... +     ..++.+..+|+... ..+++||
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v~~~~~d~~~~-~~~~~fD  181 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADF-ISDQMYD  181 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTC-CCSCCEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECchhcc-CcCCCcc
Confidence            578899999999999999999998656679999999999999999998774 4     36899999998763 3456899


Q ss_pred             EEEecCCCC-chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+-. .+++.+.++|+|||++++.++..
T Consensus       182 ~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          182 AVIADIPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             EEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             EEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            999976654 47899999999999999988765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.62  E-value=2.3e-15  Score=114.61  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=87.6

Q ss_pred             hcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962         10 LEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        10 l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      +...+++|.+|+|+|||+|++++.+++. ++..+|+++|+++.+++.|++++..+++    .+++.+..+|........+
T Consensus         9 l~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~i~~~~~d~l~~l~~~~   83 (225)
T 3kr9_A            9 VASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKIQVRLANGLAAFEETD   83 (225)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGGG
T ss_pred             HHHhCCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECchhhhcccCc
Confidence            3345778999999999999999999987 4556899999999999999999999775    2579999999865444333


Q ss_pred             CccEEEecCCC----CchHHHHHhcCCCCeEEEEeecC
Q psy14962         90 PFDAIYLSTYV----PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        90 ~~D~i~~~~~~----~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +||+|++...-    ..++......|+++|+++++-..
T Consensus        84 ~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           84 QVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             CCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence            69988865442    44667788899999999997653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.61  E-value=8.7e-15  Score=111.28  Aligned_cols=105  Identities=20%  Similarity=0.151  Sum_probs=86.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  ..++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++..         .++.++.+|+...
T Consensus        36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~~  101 (220)
T 3hnr_A           36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLSF  101 (220)
T ss_dssp             HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSSC
T ss_pred             HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhhc
Confidence            4555554  357889999999999999999987   4599999999999999987642         3688999998866


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ... ++||+|++...+++        +++.+.++|||||.+++..+..
T Consensus       102 ~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          102 EVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             CCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             CCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            554 78999999988865        5678889999999999976443

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=121.26  Aligned_cols=113  Identities=19%  Similarity=0.251  Sum_probs=84.6

Q ss_pred             hcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC----------------------
Q psy14962         10 LEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD----------------------   67 (216)
Q Consensus        10 l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----------------------   67 (216)
                      +.....++.+|||+|||+|..+..+++.++ ..+|+|+|+++.+++.|++++...+..                      
T Consensus        40 l~~~~~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (292)
T 3g07_A           40 LKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTT  118 (292)
T ss_dssp             SCGGGTTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------
T ss_pred             hhhhhcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence            333344688999999999999999999864 469999999999999999876543210                      


Q ss_pred             -------------------------------CCCCCCeEEEeccCCCCC-----CCCCCccEEEecCCCCc---------
Q psy14962         68 -------------------------------LLNDGRLHLRCRDGRTGL-----LHQAPFDAIYLSTYVPE---------  102 (216)
Q Consensus        68 -------------------------------~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~~~~---------  102 (216)
                                                     ...+.++.++.+|+....     ...++||+|++...+.+         
T Consensus       119 ~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~  198 (292)
T 3g07_A          119 TVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEG  198 (292)
T ss_dssp             -----------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHH
T ss_pred             cccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHH
Confidence                                           001157999999987443     24578999999988633         


Q ss_pred             ---hHHHHHhcCCCCeEEEEeecC
Q psy14962        103 ---IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus       103 ---~~~~~~~~L~~gG~lv~~~~~  123 (216)
                         +++.+.++|+|||+|++....
T Consensus       199 ~~~~l~~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          199 LKRMFRRIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHhCCCcEEEEecCC
Confidence               468889999999999996443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.61  E-value=2.5e-15  Score=114.70  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=89.7

Q ss_pred             HhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC
Q psy14962          9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ   88 (216)
Q Consensus         9 ~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (216)
                      .+...+.+|.+|+|+|||+|++++.+++. ++..+|+++|+++.+++.|++++..+++    .+++.+..+|......+.
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl----~~~I~~~~gD~l~~~~~~   88 (230)
T 3lec_A           14 KVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGL----TSKIDVRLANGLSAFEEA   88 (230)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCGG
T ss_pred             HHHHhCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECchhhccccc
Confidence            34446788999999999999999999987 4456899999999999999999998775    357999999987665544


Q ss_pred             CCccEEEecCCC----CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         89 APFDAIYLSTYV----PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        89 ~~~D~i~~~~~~----~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++||+|++...-    ..++......|+++|+|+++-...
T Consensus        89 ~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~  128 (230)
T 3lec_A           89 DNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNR  128 (230)
T ss_dssp             GCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             cccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence            479998765543    345677778999999999976543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.61  E-value=9.2e-16  Score=122.66  Aligned_cols=110  Identities=16%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             hcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962         10 LEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        10 l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      +...+.++.+|||+|||+|..+..++....++.+|+++|+++.+++.|++++...+.    ..++.++.+|+...... +
T Consensus       112 l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~-~  186 (305)
T 3ocj_A          112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL----AGQITLHRQDAWKLDTR-E  186 (305)
T ss_dssp             HHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEECCGGGCCCC-S
T ss_pred             HHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECchhcCCcc-C
Confidence            334567899999999999999998863334567999999999999999999876543    24599999998865544 8


Q ss_pred             CccEEEecCCCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||+|++..++++         +++.+.++|||||++++.....
T Consensus       187 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          187 GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             CEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             CeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            8999999887754         3688899999999999976554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=1e-14  Score=117.10  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.|+++....++    ..++.+..+|+....   ++||+
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~---~~fD~  158 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWEDFA---EPVDR  158 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGGCC---CCCSE
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEECChHHCC---CCcCE
Confidence            46889999999999999999998863  4999999999999999999887553    256899999976542   67999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |++...+++        +++.+.++|+|||++++..+...
T Consensus       159 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          159 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             EEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            999877654        45788899999999999766553

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.61  E-value=1e-14  Score=114.97  Aligned_cols=106  Identities=29%  Similarity=0.448  Sum_probs=90.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|++++...++    ..++.+..+|+... ...++||+
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~D~  184 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIKVRDISEG-FDEKDVDA  184 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEECCCGGGC-CSCCSEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEEECCHHHc-ccCCccCE
Confidence            57889999999999999999999866667999999999999999999887542    25789999998755 33468999


Q ss_pred             EEecCCCC-chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+.. .++..+.++|+|||.+++.++..
T Consensus       185 V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          185 LFLDVPDPWNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             EEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             EEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            99987765 57899999999999999987754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=5.9e-15  Score=114.89  Aligned_cols=99  Identities=16%  Similarity=0.202  Sum_probs=84.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.++++.          .++.+..+|+.... ..++||+
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~   98 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLATWK-PAQKADL   98 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTTCC-CSSCEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhhcC-ccCCcCE
Confidence            4578899999999999999999886 4569999999999999998761          57899999987655 5678999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      ++.++.++|+|||++++.++..
T Consensus        99 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           99 LYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             EEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             EEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            999988765      4578899999999999987654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.61  E-value=4.1e-15  Score=122.59  Aligned_cols=107  Identities=24%  Similarity=0.241  Sum_probs=88.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-----CCCCCCCCCeEEEeccCCCC----
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-----RPDLLNDGRLHLRCRDGRTG----   84 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~d~~~~----   84 (216)
                      +.++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.|++++...     |.  +...++.++.+|+...    
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~--~~~~~v~~~~~d~~~l~~~~  158 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS--PSRSNVRFLKGFIENLATAE  158 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS--TTCCCEEEEESCTTCGGGCB
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc--cCCCceEEEEccHHHhhhcc
Confidence            457899999999999999999998866779999999999999999987653     20  1125899999998754    


Q ss_pred             --CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         85 --LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 --~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                        ...+++||+|+++..+++      ++.++.++|||||++++...
T Consensus       159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  204 (383)
T 4fsd_A          159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV  204 (383)
T ss_dssp             SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence              445678999999988765      56899999999999999754

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.61  E-value=1e-14  Score=118.99  Aligned_cols=106  Identities=22%  Similarity=0.178  Sum_probs=90.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|.++..++...++...++|+|+++.+++.|++++...++     .++++..+|+.......+.||+
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~~i~~~~~D~~~~~~~~~~~D~  275 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----SWIRFLRADARHLPRFFPEVDR  275 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----TTCEEEECCGGGGGGTCCCCSE
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----CceEEEeCChhhCccccCCCCE
Confidence            56788999999999999999999864557999999999999999999988663     4799999998865544566899


Q ss_pred             EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.++..              ++..+.++|+|||.+++.++++
T Consensus       276 Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          276 ILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             EEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             EEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            999888632              4567889999999999988766

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.60  E-value=5.2e-15  Score=116.87  Aligned_cols=105  Identities=18%  Similarity=0.082  Sum_probs=88.3

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|.++..+++... . +|+++|+++.+++.|++++..+++    ..++.++++|+..... .++||
T Consensus       122 ~~~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~----~~~v~~~~~D~~~~~~-~~~fD  194 (278)
T 2frn_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFPG-ENIAD  194 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCCC-CSCEE
T ss_pred             hCCCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCC----CceEEEEECCHHHhcc-cCCcc
Confidence            356799999999999999999999843 2 799999999999999999988664    2458999999876654 67899


Q ss_pred             EEEecCCCC--chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP--EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~--~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+..  .++..+.++|+|||.+++....+
T Consensus       195 ~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          195 RILMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEECCchhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            999987754  47789999999999999976543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=4.8e-15  Score=111.69  Aligned_cols=111  Identities=16%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+...+.++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...+.     .++.+..+|+...
T Consensus        49 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~  121 (205)
T 3grz_A           49 LAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGI-----YDIALQKTSLLAD  121 (205)
T ss_dssp             HHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTC-----CCCEEEESSTTTT
T ss_pred             HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEecccccc
Confidence            344555444678899999999999999998875  245999999999999999999887653     4589999998654


Q ss_pred             CCCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .  .++||+|+++.+.+.   +++.+.++|+|||++++.....
T Consensus       122 ~--~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          122 V--DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             C--CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             C--CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecCc
Confidence            3  468999999988765   3577789999999999964433

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.60  E-value=1.5e-16  Score=126.31  Aligned_cols=106  Identities=20%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~   91 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|+++....+.. ....++.+..+|+....   ...++|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTLDKDVPAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccc-cccceeeEeecChhhCccccccCCCe
Confidence            56789999999999999999987   349999999999999999876432210 00145778888876543   356789


Q ss_pred             cEEEec-CCCCc-------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLS-TYVPE-------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~-~~~~~-------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|++. ..+++             +++++.++|||||++++.+++.
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            999997 55432             4578899999999999987654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.60  E-value=6.1e-15  Score=113.73  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=87.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.+.+.....++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++....+      .++.++.+|+...
T Consensus        26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~   96 (246)
T 1y8c_A           26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDISNL   96 (246)
T ss_dssp             HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGGGC
T ss_pred             HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcC------CCeEEEecccccC
Confidence            344444432347789999999999999999887   3599999999999999999887643      3789999998765


Q ss_pred             CCCCCCccEEEecC-CCCch---------HHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLST-YVPEI---------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~-~~~~~---------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ... ++||+|++.. .++++         ++.+.++|+|||.+++.++++
T Consensus        97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A           97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            443 7899999987 66543         478889999999999987765

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.60  E-value=3.2e-15  Score=112.57  Aligned_cols=105  Identities=16%  Similarity=0.143  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCC-cc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAP-FD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~D   92 (216)
                      ++.+|||+|||+|.++..++...  ..+|+++|+|+.+++.|++++...+.   ...++.++.+|+.....  ..++ ||
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD  127 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKC---SSEQAEVINQSSLDFLKQPQNQPHFD  127 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC---CTTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCC---CccceEEEECCHHHHHHhhccCCCCC
Confidence            67899999999999999877662  24899999999999999999987552   01579999999764322  2467 99


Q ss_pred             EEEecCCCC-----chHHHH--HhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP-----EIPYSI--LLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~-----~~~~~~--~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+++.++.     ..+..+  .++|+|||.+++.+....
T Consensus       128 ~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          128 VVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             EEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            999998853     244556  567999999999876653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.60  E-value=1.2e-14  Score=114.31  Aligned_cols=114  Identities=22%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHH------HHHHHHHHHHHhCCCCCCCCCeEEEe
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMRE------QCEDAWETVMRIRPDLLNDGRLHLRC   78 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (216)
                      .+++.+.  +.++.+|||+|||+|..+..+++..++..+|+++|+++.      +++.|++++...++    ..++.+..
T Consensus        34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~----~~~v~~~~  107 (275)
T 3bkx_A           34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL----GDRLTVHF  107 (275)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT----GGGEEEEC
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC----CCceEEEE
Confidence            3444443  578899999999999999999998766579999999997      99999999876442    25799999


Q ss_pred             cc-CC--CCCCCCCCccEEEecCCCCch------HHHHHhcCCCCeEEEEeecCC
Q psy14962         79 RD-GR--TGLLHQAPFDAIYLSTYVPEI------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        79 ~d-~~--~~~~~~~~~D~i~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +| ..  ......++||+|++..+++++      .+.+.++++|||++++.....
T Consensus       108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          108 NTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             SCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             CChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            98 32  222245789999999887653      355667777799999976554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.60  E-value=6.3e-16  Score=121.13  Aligned_cols=106  Identities=18%  Similarity=0.121  Sum_probs=76.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCC-----------------------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLN-----------------------   70 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-----------------------   70 (216)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+|+.|++.|++++...... ..                       
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~-~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGA-YDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTC-CCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCc-ccchHHHHHHHhcCCCCcchhhHHH
Confidence            4578899999999998877665541  137999999999999999876542100 00                       


Q ss_pred             --CCCeE-EEeccCCCCCC----CCCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeec
Q psy14962         71 --DGRLH-LRCRDGRTGLL----HQAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        71 --~~~~~-~~~~d~~~~~~----~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~  122 (216)
                        ..++. ++.+|+....+    ..++||+|++...+++          ++.+++++|||||+|++...
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~  198 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  198 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence              01233 88889875321    2468999999887654          35788899999999999753

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.60  E-value=3.9e-15  Score=113.63  Aligned_cols=104  Identities=22%  Similarity=0.313  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-----C
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-----Q   88 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~   88 (216)
                      ..++.+|||+|||+|..+..+++..+++++|+++|+++.+++.|++++...+.    ..++.++.+|+......     .
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~  131 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL----NDRVEVRTGLALDSLQQIENEKY  131 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHHHhcCC
Confidence            35788999999999999999999875467999999999999999999988664    25699999997532211     1


Q ss_pred             CCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++||+|+++.....   +++.+.++|+|||++++..
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            57999999887654   5688899999999888853

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.60  E-value=4e-15  Score=114.44  Aligned_cols=112  Identities=15%  Similarity=0.174  Sum_probs=89.6

Q ss_pred             HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC
Q psy14962          8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH   87 (216)
Q Consensus         8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (216)
                      +.+...+.++.+|||+|||+|++++.+++. ++..+|+++|+++.+++.|++++..+++    .+++.+..+|......+
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           13 EKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGL----TEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             HHHHTTCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTEEEEECSGGGGCCG
T ss_pred             HHHHHhCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC----CceEEEEecchhhccCc
Confidence            344456788999999999999999999987 4456899999999999999999998775    25699999998765544


Q ss_pred             CCCccEEEecCCC----CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         88 QAPFDAIYLSTYV----PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        88 ~~~~D~i~~~~~~----~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ..+||+|++...-    ..++......|+++++|+++-...
T Consensus        88 ~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~~  128 (244)
T 3gnl_A           88 KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNIA  128 (244)
T ss_dssp             GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            4469998865443    445677788999999999986543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.60  E-value=4.9e-15  Score=109.01  Aligned_cols=117  Identities=18%  Similarity=0.245  Sum_probs=89.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ...+++.+.. ..++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...++    ..++.++.+|+.
T Consensus        19 ~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~   91 (177)
T 2esr_A           19 RGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEAE   91 (177)
T ss_dssp             HHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCHH
T ss_pred             HHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECcHH
Confidence            4455555542 457889999999999999999887  235999999999999999999887543    246899999976


Q ss_pred             CCC-CCCCCccEEEecCCCC-----chHHHHH--hcCCCCeEEEEeecCCCC
Q psy14962         83 TGL-LHQAPFDAIYLSTYVP-----EIPYSIL--LQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        83 ~~~-~~~~~~D~i~~~~~~~-----~~~~~~~--~~L~~gG~lv~~~~~~~~  126 (216)
                      ... ...+.||+|+++.++.     ..+..+.  ++|+|||.+++.+.....
T Consensus        92 ~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           92 RAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             HHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             HhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence            421 1235699999998763     2445665  899999999998877653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=111.69  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~   90 (216)
                      +.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.+.+....       ..++.++.+|+....   ...++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-------~~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-------RTNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-------CTTEEEECSCTTCGGGGGGGCCC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-------cCCeEEEEcccCChhhhcccCCc
Confidence            56789999999999999999999976567999999999988888777665       257999999987532   23568


Q ss_pred             ccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ||+|+++.+...    ++.++.++|+|||++++.+.
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~  183 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIK  183 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence            999999877543    35678999999999999654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.60  E-value=5.3e-15  Score=113.78  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=84.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~   91 (216)
                      ..++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.|++++...++    .+++.++.+|+.....  ..++|
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~f  143 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHF----ENQVRIIEGNALEQFENVNDKVY  143 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCHHHHTTSCE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECCHHHHHHhhccCCc
Confidence            3578899999999999999999853 467999999999999999999988653    2589999999865432  15689


Q ss_pred             cEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         92 DAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        92 D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      |+|+++.....   +++.+.++|+|||++++.
T Consensus       144 D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          144 DMIFIDAAKAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EEEEEETTSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            99999887654   458888999999999884

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.60  E-value=6.4e-15  Score=112.78  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-CCCCC-CCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-TGLLH-QAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~-~~~~   91 (216)
                      +.++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++  .        .++.++++|+. ..+.. +++|
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~--~--------~~~~~~~~d~~~~~~~~~~~~f  112 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN--A--------PHADVYEWNGKGELPAGLGAPF  112 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH--C--------TTSEEEECCSCSSCCTTCCCCE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh--C--------CCceEEEcchhhccCCcCCCCE
Confidence            568899999999999999999987   45999999999999999887  1        57899999984 33334 6789


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEE
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLV  118 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv  118 (216)
                      |+|++......++..+.++|||||.++
T Consensus       113 D~v~~~~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          113 GLIVSRRGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEESCCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEeCCCHHHHHHHHHHHcCCCcEEE
Confidence            999999888889999999999999999

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.59  E-value=8.4e-15  Score=117.65  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...+.     .++.++.+|+.......++||+
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~~~~~~~fD~  190 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-----LNVILFHSSSLHIGELNVEFDK  190 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----CSEEEESSCGGGGGGGCCCEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CeEEEEECChhhcccccccCCE
Confidence            57899999999999999999999875557999999999999999999988763     5799999998754333567999


Q ss_pred             EEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+.                            ..++..+.++|||||++++++.+.
T Consensus       191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            9997552                            135578889999999999977654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.59  E-value=6.4e-14  Score=108.37  Aligned_cols=104  Identities=18%  Similarity=0.288  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|+++....++    ..++.+...|+......++.||+
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~D~  161 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNL----GKNVKFFNVDFKDAEVPEGIFHA  161 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTC----CTTEEEECSCTTTSCCCTTCBSE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCC----CCcEEEEEcChhhcccCCCcccE
Confidence            568899999999999999999988   35999999999999999999887553    25789999998765424567999


Q ss_pred             EEecCCCC-chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP-EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+.. .+++.+.++|+|||++++..+..
T Consensus       162 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          162 AFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             EEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             EEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            99987765 67899999999999999988764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=1e-14  Score=115.04  Aligned_cols=105  Identities=29%  Similarity=0.449  Sum_probs=86.2

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  ..++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.++++.          .++.+..+|+...
T Consensus        48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~~  112 (279)
T 3ccf_A           48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKARQNY----------PHLHFDVADARNF  112 (279)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTTC
T ss_pred             HHHHHhC--CCCCCEEEEecCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhhC
Confidence            4455554  467889999999999999999883   569999999999999998763          4688999998764


Q ss_pred             CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .. .++||+|++...+++      ++.++.++|+|||++++.++...
T Consensus       113 ~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          113 RV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             CC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             Cc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            44 578999999988765      56889999999999999876553

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.59  E-value=1.2e-14  Score=114.93  Aligned_cols=107  Identities=20%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+      .++.+..+|+...
T Consensus       111 ~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~  179 (286)
T 3m70_A          111 DVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKEN------LNISTALYDINAA  179 (286)
T ss_dssp             HHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCGGGC
T ss_pred             HHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcC------CceEEEEeccccc
Confidence            3444443  237889999999999999999987   4599999999999999999988754      3799999998765


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .. .++||+|++..++++        +++.+.++|+|||.+++.+..
T Consensus       180 ~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (286)
T 3m70_A          180 NI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM  225 (286)
T ss_dssp             CC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            44 678999999887753        557889999999998776543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.59  E-value=5.1e-15  Score=109.66  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+. ...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++...++    ..++.++.+|+..
T Consensus        33 ~~~~~~l~-~~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~  105 (187)
T 2fhp_A           33 ESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKE----PEKFEVRKMDANR  105 (187)
T ss_dssp             HHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHH
T ss_pred             HHHHHHHH-hhcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCC----CcceEEEECcHHH
Confidence            34455553 2357889999999999999988875  235999999999999999999887653    2478999999764


Q ss_pred             CCC----CCCCccEEEecCCCC-----chHHHH--HhcCCCCeEEEEeecCCCC
Q psy14962         84 GLL----HQAPFDAIYLSTYVP-----EIPYSI--LLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        84 ~~~----~~~~~D~i~~~~~~~-----~~~~~~--~~~L~~gG~lv~~~~~~~~  126 (216)
                      ...    ..++||+|+++.++.     ..+..+  .++|+|||.+++.......
T Consensus       106 ~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A          106 ALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             HHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             HHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence            221    146799999998753     234555  7789999999998777653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.59  E-value=1.1e-14  Score=113.50  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  +.++.+|||+|||+|.++..+++.   +.+|+++|+|+.|++.|++++...        .+.....+...
T Consensus        35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~~~~  101 (261)
T 3iv6_A           35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR--------CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS--------CCEEEECCTTS
T ss_pred             HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc--------cceeeeeeccc
Confidence            34444443  578899999999999999999987   459999999999999999886441        22222333221


Q ss_pred             --CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 --GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 --~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                        .....++||+|+++..+++        .+..+.++| |||++++++...
T Consensus       102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence              1112468999999988764        356778899 999999988654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.59  E-value=7.6e-15  Score=113.15  Aligned_cols=110  Identities=14%  Similarity=0.139  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC-CCCCCCCCeEEEeccCCCCC---CCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR-PDLLNDGRLHLRCRDGRTGL---LHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~---~~~~   89 (216)
                      ..++.+|||||||+|.++..+++.. ++..++|+|+++.+++.|++++.... .......|+.++.+|+....   ...+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence            3456789999999999999999874 56799999999999999998765310 00011368999999987522   3467


Q ss_pred             CccEEEecCCCC--------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||.|++..+.+              .++..+.++|+|||.+++.+...
T Consensus       123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~  171 (235)
T 3ckk_A          123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL  171 (235)
T ss_dssp             CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            899999876543              36788999999999999987654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.59  E-value=1.8e-14  Score=118.19  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=88.8

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+.  ..++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.+++++..+++.  ...++.+...|+....
T Consensus       214 ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~~~~  288 (375)
T 4dcm_A          214 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV  288 (375)
T ss_dssp             HHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTTTTC
T ss_pred             HHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhhccC
Confidence            444443  3456899999999999999999984 4679999999999999999999886531  0125788999987643


Q ss_pred             CCCCCccEEEecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                       ..++||+|+++.+++.           +++.+.++|+|||++++.+...
T Consensus       289 -~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          289 -EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             -CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             -CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence             4568999999988752           4688999999999999976554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.59  E-value=2e-15  Score=116.28  Aligned_cols=100  Identities=19%  Similarity=0.152  Sum_probs=79.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~   91 (216)
                      ..++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.|+++....+      .++.++.+|+...  ...+++|
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~f  129 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhhcccCCCce
Confidence            3578899999999999999997652  2389999999999999999876532      5789999998654  4456789


Q ss_pred             cEEEe-cCCC-----C-----chHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYL-STYV-----P-----EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~-~~~~-----~-----~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|++ ....     +     .+++++.++|||||++++..
T Consensus       130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            99999 3331     1     23688999999999998754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.59  E-value=2.3e-15  Score=116.17  Aligned_cols=98  Identities=21%  Similarity=0.201  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D   92 (216)
                      .+|.+|||||||+|..+..+++..  ..+++++|+++.+++.|+++....+      .+++++.+|+...  ...+++||
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~FD  130 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHhhcccccccCCc
Confidence            678999999999999999988763  2489999999999999999877643      5678888886532  23467899


Q ss_pred             EEEecCCCC-----------chHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTYVP-----------EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~~~-----------~~~~~~~~~L~~gG~lv~~  120 (216)
                      .|+.+....           .+++++.++|||||+|++.
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            998754431           1457889999999999873

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.58  E-value=6.9e-15  Score=111.23  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=81.4

Q ss_pred             ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        12 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      ..+.++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++.           ++.+..+|+.... ..++|
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~-~~~~f  103 (211)
T 3e23_A           39 GELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQLD-AIDAY  103 (211)
T ss_dssp             TTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGGCC-CCSCE
T ss_pred             HhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-----------CCceEEeeeccCC-CCCcE
Confidence            35678899999999999999999987   459999999999999998875           2567778876554 56789


Q ss_pred             cEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|++...+++        +++.+.++|+|||++++.....
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            99999988765        4578889999999999976544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=5.8e-15  Score=112.66  Aligned_cols=105  Identities=13%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CC----C
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LH----Q   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~----~   88 (216)
                      .++.+|||+|||+|..+..+++.++++++|+++|+++.+++.|++++...++    .++++++.+|+....  ..    .
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~  132 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKVTILNGASQDLIPQLKKKYDV  132 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHGGGTTTTSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCceEEEECCHHHHHHHHHHhcCC
Confidence            4678999999999999999999765567999999999999999999988764    246999999974321  11    1


Q ss_pred             CCccEEEecCCCCchH------HHHHhcCCCCeEEEEeecCC
Q psy14962         89 APFDAIYLSTYVPEIP------YSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++||+|+++...++..      ..+ ++|+|||++++.....
T Consensus       133 ~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          133 DTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             CceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            6899999998776543      233 8999999999865443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.58  E-value=8.6e-15  Score=116.88  Aligned_cols=108  Identities=11%  Similarity=0.063  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCCCeEEEeccCCCC--------CC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL-NDGRLHLRCRDGRTG--------LL   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~--------~~   86 (216)
                      ++.+|||+|||+|..+..+++..  ..+|+|+|+|+.|++.|+++....+.... ...++++.+.|+...        ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            57899999999998766665542  35999999999999999998876431000 000256778877321        12


Q ss_pred             CCCCccEEEecCCCCc---------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         87 HQAPFDAIYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ..++||+|+|...+++         +++++.++|||||++++.+++..
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~  173 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD  173 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            3568999998776642         56889999999999999987753

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.58  E-value=1.5e-14  Score=114.73  Aligned_cols=106  Identities=22%  Similarity=0.296  Sum_probs=87.1

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~   91 (216)
                      .+.++.+|||+|||+|..+..+++..  ..+++++|+++.+++.|++++...+.    ..++.++.+|+..... ..++|
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~f  134 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEF  134 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCCCCSSCE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCC----CccEEEEECCccccccCCCCCc
Confidence            35788999999999999999888762  34999999999999999999876442    2468999999876544 46789


Q ss_pred             cEEEecCCCCc----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|++...+++          ++..+.++|+|||++++.+++.
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            99999887743          4578889999999999988765

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.58  E-value=1.6e-14  Score=112.93  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             CC-CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962         14 IQ-EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAP   90 (216)
Q Consensus        14 ~~-~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~   90 (216)
                      +. ++.+|||+|||+|.++..+++...  .+|+++|+++.+++.|++++...++    ..++.++.+|+....  ...++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~----~~~v~~~~~D~~~~~~~~~~~~  119 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQL----EDQIEIIEYDLKKITDLIPKER  119 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTC----TTTEEEECSCGGGGGGTSCTTC
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCC----cccEEEEECcHHHhhhhhccCC
Confidence            56 789999999999999999998842  3999999999999999999988664    257999999987543  23578


Q ss_pred             ccEEEecCCCC--------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYVP--------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~~--------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|+++.++.                          .++..+.++|+|||++++.....
T Consensus       120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  179 (259)
T 3lpm_A          120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE  179 (259)
T ss_dssp             EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence            99999987752                          25578889999999999976443

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.58  E-value=1.1e-14  Score=113.14  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~   91 (216)
                      .++.+|||+|||+|..+..++... ++.+|+++|+++.+++.|+++....++     .+++++++|+.....   ..++|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l-----~~v~~~~~d~~~~~~~~~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGL-----KGARALWGRAEVLAREAGHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEECCHHHHTTSTTTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-----CceEEEECcHHHhhcccccCCCc
Confidence            467899999999999999999875 467999999999999999999988763     579999999864332   23689


Q ss_pred             cEEEecCCC--CchHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYV--PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|++....  ..+++.+.++|+|||++++....
T Consensus       153 D~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          153 ARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             EEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             eEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999997654  34678899999999999986643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.58  E-value=8.8e-15  Score=112.52  Aligned_cols=101  Identities=21%  Similarity=0.126  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+.    ..++.++.+|+.... ..++||+|+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~-~~~~fD~v~  137 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPK----AEYFSFVKEDVFTWR-PTELFDLIF  137 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGG----GGGEEEECCCTTTCC-CSSCEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCC----CcceEEEECchhcCC-CCCCeeEEE
Confidence            4459999999999999988764   56999999999999999998765221    257999999987654 345899999


Q ss_pred             ecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +...+++        +++.+.++|+|||++++.....
T Consensus       138 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          138 DYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             EESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            9887754        4588899999999999876554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.58  E-value=2e-14  Score=112.75  Aligned_cols=99  Identities=20%  Similarity=0.324  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|+++.          .++.+..+|.......+++||+|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhhCCCCCCceeEE
Confidence            578899999999999999999875 3569999999999999998763          45789999987655556789999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++... ...+.++.++|+|||.+++.++...
T Consensus       153 ~~~~~-~~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          153 IRIYA-PCKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             EEESC-CCCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEeCC-hhhHHHHHHhcCCCcEEEEEEcCHH
Confidence            98765 4567999999999999999887764

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.57  E-value=8.7e-15  Score=112.95  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC--CCCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG--LLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~   90 (216)
                      .+.++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.++++             +.++.+|....  ...+++
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~~~~~~  101 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKSLPDKY  101 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHTSCTTC
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhhcCCCC
Confidence            4578899999999999999999887   34899999999999888642             67888887542  334678


Q ss_pred             ccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||+|++...+++        +++++.++|||||++++.++++.
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  144 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT  144 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            999999888754        45788999999999999887764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.57  E-value=3.1e-15  Score=114.28  Aligned_cols=104  Identities=20%  Similarity=0.273  Sum_probs=84.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---C---
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---H---   87 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~---   87 (216)
                      ..++.+|||+|||+|..+..+++.++++.+|+++|+++.+++.|++++...+.    ..++.++.+|+.....   .   
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~  137 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL----SDKIGLRLSPAKDTLAELIHAGQ  137 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHHHTTTC
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCceEEEeCCHHHHHHHhhhccC
Confidence            35678999999999999999998865467999999999999999999988664    2569999999753221   1   


Q ss_pred             CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      .++||+|+++.....   +++.+.++|+|||++++..
T Consensus       138 ~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          138 AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            168999998877543   5688899999999999854

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=8.4e-15  Score=106.86  Aligned_cols=114  Identities=18%  Similarity=0.100  Sum_probs=87.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+...+.++.+|||+|||+|..+..+++. +  ..|+++|+++.+++.|++++...+     . +++++.+|+..
T Consensus        29 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~d~~~   99 (171)
T 1ws6_A           29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-G--WEAVLVEKDPEAVRLLKENVRRTG-----L-GARVVALPVEV   99 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-T--CEEEEECCCHHHHHHHHHHHHHHT-----C-CCEEECSCHHH
T ss_pred             HHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-C--CeEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEEeccHHH
Confidence            3444555433447889999999999999999987 2  369999999999999999988754     2 78999998764


Q ss_pred             CCC----CCCCccEEEecCCC----CchHHHHH--hcCCCCeEEEEeecCCCC
Q psy14962         84 GLL----HQAPFDAIYLSTYV----PEIPYSIL--LQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        84 ~~~----~~~~~D~i~~~~~~----~~~~~~~~--~~L~~gG~lv~~~~~~~~  126 (216)
                      ...    ..++||+|+++.++    ...+..+.  ++|+|||.+++.+.....
T Consensus       100 ~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          100 FLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             HHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             HHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            221    12479999999765    34556777  999999999998877653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.57  E-value=8.1e-15  Score=113.27  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~   91 (216)
                      .++.+|||+|||+|..+..++... ++.+|+++|+++.+++.|+++....++     .++.++++|+......   .++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL-----ENTTFCHDRAETFGQRKDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEESCHHHHTTCTTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEeccHHHhcccccccCCc
Confidence            467899999999999999998753 467999999999999999999888663     5799999987643321   4689


Q ss_pred             cEEEecCCC--CchHHHHHhcCCCCeEEEEeec
Q psy14962         92 DAIYLSTYV--PEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        92 D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |+|++....  ..+++.+.++|+|||++++...
T Consensus       143 D~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g  175 (240)
T 1xdz_A          143 DIVTARAVARLSVLSELCLPLVKKNGLFVALKA  175 (240)
T ss_dssp             EEEEEECCSCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeC
Confidence            999997743  2366888899999999988643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.57  E-value=2.7e-14  Score=107.93  Aligned_cols=102  Identities=22%  Similarity=0.261  Sum_probs=82.5

Q ss_pred             HhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC
Q psy14962          9 LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ   88 (216)
Q Consensus         9 ~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (216)
                      .+...+.++.+|||+|||+|..+..+    + ..+++++|+++.+++.++++.          .++.++.+|.......+
T Consensus        29 ~l~~~~~~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~   93 (211)
T 2gs9_A           29 ALKGLLPPGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPG   93 (211)
T ss_dssp             HHHTTCCCCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTSCCSCS
T ss_pred             HHHHhcCCCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcccccCCCCC
Confidence            33333457889999999999998776    1 228999999999999998764          35889999987665556


Q ss_pred             CCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         89 APFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        89 ~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++||+|++...+++      +++++.++|||||.+++.++++.
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A           94 ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             SCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            78999999988765      45888999999999999887664

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=8.5e-15  Score=114.50  Aligned_cols=104  Identities=19%  Similarity=0.161  Sum_probs=84.3

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+.+.+.  ..++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.++++           .++.++.+|+..
T Consensus        24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~~d~~~   87 (261)
T 3ege_A           24 NAIINLLN--LPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAVVH-----------PQVEWFTGYAEN   87 (261)
T ss_dssp             HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCHHHHHSSCCC-----------TTEEEECCCTTS
T ss_pred             HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCHHHHHHHHhc-----------cCCEEEECchhh
Confidence            34445553  467899999999999999999873   56999999999998877543           278999999987


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....+++||+|++...+++      +++++.++|| ||++++....+
T Consensus        88 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A           88 LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            6556689999999988765      5689999999 99888876654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.57  E-value=4.3e-14  Score=111.87  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc---c
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF---D   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---D   92 (216)
                      ++.+|||+|||+|.++..+++.  ++.+|+++|+|+.+++.|++++...++    ..++.++.+|+.....  ++|   |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l----~~~v~~~~~D~~~~~~--~~f~~~D  194 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGV----SDRFFVRKGEFLEPFK--EKFASIE  194 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEEESSTTGGGG--GGTTTCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECcchhhcc--cccCCCC
Confidence            6789999999999999999988  567999999999999999999988664    2359999999875332  468   9


Q ss_pred             EEEecCCCC-------------------------chHHHHH-hcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP-------------------------EIPYSIL-LQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~-------------------------~~~~~~~-~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+..                         .+++.+. +.|+|||.+++.....
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            999985542                         3467888 9999999999976554

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.57  E-value=9e-15  Score=112.93  Aligned_cols=102  Identities=15%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.|++++...+     ..++.++.+|+.......++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-----CceEEEEEcChhhcCCCCCCEEEEE
Confidence            58899999999999999988774  3499999999999999999876532     2468899999876555566899999


Q ss_pred             ecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +...+++        ++..+.++|+|||++++..+..
T Consensus       152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            9988654        4578889999999999976544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.57  E-value=3.2e-14  Score=114.06  Aligned_cols=120  Identities=15%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC--CCCCCeEEEecc
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL--LNDGRLHLRCRD   80 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~d   80 (216)
                      +..+++.+...+.++.+|||+|||+|..+..+++.  +..+++++|+++.+++.|+++....+...  ....++.++++|
T Consensus        21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            44555555443457889999999999999988875  35699999999999999999876531000  012478999999


Q ss_pred             CCCCC----C--CCCCccEEEecCCCCch----------HHHHHhcCCCCeEEEEeecCC
Q psy14962         81 GRTGL----L--HQAPFDAIYLSTYVPEI----------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        81 ~~~~~----~--~~~~~D~i~~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +....    .  ..++||+|++...++++          +.++.++|+|||.+++.++..
T Consensus        99 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A           99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             ccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            87543    2  23589999999887543          478889999999999988765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.57  E-value=4.1e-14  Score=109.78  Aligned_cols=99  Identities=21%  Similarity=0.233  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.|+++....+      .++.++.+|+..... .++||+|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~-~~~fD~v  109 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAF-KNEFDAV  109 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCC-CSCEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhhccc-CCCccEE
Confidence            56789999999999999999887   4599999999999999999987644      368999999875443 3679999


Q ss_pred             EecCCC---------CchHHHHHhcCCCCeEEEEeecC
Q psy14962         95 YLSTYV---------PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        95 ~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ++....         ..+++.+.++|+|||.+++..++
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            975332         12557888999999999987765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.57  E-value=1e-14  Score=109.86  Aligned_cols=103  Identities=12%  Similarity=0.073  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~i   94 (216)
                      ++.+|||+|||+|.++..++...  ..+|+++|+++.+++.|++++...+     ..++.++.+|+... ....++||+|
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~-----~~~v~~~~~D~~~~~~~~~~~fD~V  126 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFLAQKGTPHNIV  126 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHHSSCCCCEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcC-----CCcEEEEECCHHHHHhhcCCCCCEE
Confidence            67899999999999999877763  2499999999999999999998855     25899999997642 2234689999


Q ss_pred             EecCCCC-----chHHHHHh--cCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVP-----EIPYSILL--QLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~-----~~~~~~~~--~L~~gG~lv~~~~~~~  125 (216)
                      +++.+++     .++..+.+  +|+|||++++.+....
T Consensus       127 ~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          127 FVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             EECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             EECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            9998854     24455544  5999999999876653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.57  E-value=7.8e-15  Score=113.92  Aligned_cols=103  Identities=15%  Similarity=0.232  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------C
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------H   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~   87 (216)
                      .++.+|||+|||+|+.+..+++.+.++++|+++|+++.+++.|++++...++    ..+++++.+|+.....       .
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCeEEEECCHHHHHHHHHhccCC
Confidence            4678999999999999999999875467999999999999999999987653    2579999999753221       1


Q ss_pred             CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      .++||+|+++.....   +++.+.++|+|||++++..
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence            468999999876543   5678899999999998853

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.57  E-value=4e-14  Score=111.61  Aligned_cols=101  Identities=20%  Similarity=0.247  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.|++++...++     .++.++.+|+.... ..++||+|
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~v~~~~~d~~~~~-~~~~fD~I  180 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHILQSDWFSAL-AGQQFAMI  180 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCSTTGGG-TTCCEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEcchhhhc-ccCCccEE
Confidence            567899999999999999999875 457999999999999999999988663     57999999987543 25689999


Q ss_pred             EecCCCC-------------------------------chHHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYVP-------------------------------EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +++.+..                               .++..+.++|+|||++++...
T Consensus       181 v~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          181 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             EECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9986542                               234678899999999999643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.56  E-value=2.6e-14  Score=107.67  Aligned_cols=101  Identities=11%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.+++++...+.     .++.+..+|+.... ..++||+|+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~-~~~~~D~i~  137 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL-----ENIEPVQSRVEEFP-SEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEECCTTTSC-CCSCEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEecchhhCC-ccCCcCEEE
Confidence            47899999999999999999875 456999999999999999999887553     56999999987544 346899999


Q ss_pred             ecCCC--CchHHHHHhcCCCCeEEEEeecC
Q psy14962         96 LSTYV--PEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        96 ~~~~~--~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +....  ..++..+.++|+|||.+++....
T Consensus       138 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  167 (207)
T 1jsx_A          138 SRAFASLNDMVSWCHHLPGEQGRFYALKGQ  167 (207)
T ss_dssp             CSCSSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred             EeccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            86532  23678889999999999997554

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=7.7e-16  Score=119.25  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC------C
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH------Q   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~   88 (216)
                      .++.+|||+|||+|..+..+++.++++++|+++|+++.+++.|++++...++    ..++.++.+|+......      .
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~gda~~~l~~~~~~~~~  134 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ----EHKIKLRLGPALDTLHSLLNEGGE  134 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC----TTTEEEEESCHHHHHHHHHHHHCS
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHHhhccCC
Confidence            4678999999999999999999875567999999999999999999988664    25899999997543221      3


Q ss_pred             CCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeec
Q psy14962         89 APFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        89 ~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++||+|+++.....   +++.+.++|+|||++++...
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          135 HQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             SCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             CCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECC
Confidence            68999999887654   46788999999999999543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.56  E-value=3e-14  Score=109.39  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC----CCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT----GLLHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~   89 (216)
                      +.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++..       ..++.++.+|+..    .... +
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~-~  142 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYANIV-E  142 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCcccccccC-c
Confidence            46788999999999999999999864 46999999999999999887654       2679999999875    3333 6


Q ss_pred             CccEEEecCCCC----chHHHHHhcCCCCeEEEEe
Q psy14962         90 PFDAIYLSTYVP----EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        90 ~~D~i~~~~~~~----~~~~~~~~~L~~gG~lv~~  120 (216)
                      +||+|+.+...+    .++..+.+.|+|||++++.
T Consensus       143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          143 KVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            899999765544    2478999999999999996

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.56  E-value=3.4e-15  Score=113.54  Aligned_cols=112  Identities=15%  Similarity=0.101  Sum_probs=80.4

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      .++.+.  ..++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.+.+....... ..+..++.++++|+....
T Consensus        19 ~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~-~~~~~~v~~~~~d~~~l~   94 (218)
T 3mq2_A           19 EFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA-KGGLPNLLYLWATAERLP   94 (218)
T ss_dssp             HHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG-GTCCTTEEEEECCSTTCC
T ss_pred             HHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh-hcCCCceEEEecchhhCC
Confidence            444443  5688999999999999999999974 567999999999988864433321000 011358999999998755


Q ss_pred             CCCCCccEEEecCCC-----------CchHHHHHhcCCCCeEEEEeec
Q psy14962         86 LHQAPFDAIYLSTYV-----------PEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~-----------~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ...+. |.|++....           ..+++++.++|||||.+++...
T Consensus        95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            54455 777644322           4467899999999999999643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.56  E-value=3.1e-14  Score=108.91  Aligned_cols=101  Identities=23%  Similarity=0.287  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~   90 (216)
                      +.++.+|||+|||+|.++..+++..++..+|+++|+++.+++.+++++..       ..++.++.+|+....   ...++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTCGGGGTTTCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-------cCCCEEEEccCCCcchhhcccCC
Confidence            56789999999999999999999876667999999999999999887754       257999999987521   12357


Q ss_pred             ccEEEecCCCCc----hHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPE----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~  121 (216)
                      ||+|+++.+.+.    ++..+.++|+|||++++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999877553    3788999999999999873

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.56  E-value=2.5e-14  Score=106.00  Aligned_cols=111  Identities=23%  Similarity=0.244  Sum_probs=88.5

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  +.++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++...+.    ..++.+..+|....
T Consensus        24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL----GDNVTLMEGDAPEA   94 (192)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC----CTTEEEEESCHHHH
T ss_pred             HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCC----CcceEEEecCHHHh
Confidence            3444443  5788999999999999999998874   5999999999999999999887542    25789999987642


Q ss_pred             CCCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....++||+|++..++++   ++..+.++|+|||.+++.....
T Consensus        95 ~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A           95 LCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             HTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             cccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecCc
Confidence            222257999999988654   5688899999999999987654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.56  E-value=1.2e-14  Score=112.48  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             HHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962          7 IELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus         7 ~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (216)
                      +..+..++.++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.++++..        ..++.++.+|+.....
T Consensus        47 ~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~~~d~~~~~~  115 (245)
T 3ggd_A           47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT--------AANISYRLLDGLVPEQ  115 (245)
T ss_dssp             HHHHTTTSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC--------CTTEEEEECCTTCHHH
T ss_pred             HHHHhhccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc--------ccCceEEECccccccc
Confidence            33344456788999999999999999999883   389999999999999998752        2579999999875322


Q ss_pred             C-----CCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         87 H-----QAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        87 ~-----~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .     ...||+|++...+++        +++++.++|||||++++.....
T Consensus       116 ~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          116 AAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             HHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             ccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            1     124899999887754        4578899999999988876544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=3.1e-14  Score=111.31  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---hCCCCCCCCCeEEEeccCCCCC-----
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR---IRPDLLNDGRLHLRCRDGRTGL-----   85 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~d~~~~~-----   85 (216)
                      ..++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|++++..   .++    ..++.++++|+....     
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF----SARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGEEEEECCTTCCHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceEEEEeCCHHHHhhhhhh
Confidence            4577899999999999999999885 457999999999999999998765   442    246999999987551     


Q ss_pred             --CCCCCccEEEecCCCC------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 --LHQAPFDAIYLSTYVP------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                        ...++||+|+++.++.                        .+++.+.++|+|||++++..+..
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence              2356899999986643                        23577889999999999876544

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.55  E-value=5.3e-14  Score=109.06  Aligned_cols=108  Identities=13%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCC-C--CCCCeEEEeccCCCCC---CCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL-L--NDGRLHLRCRDGRTGL---LHQ   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~~d~~~~~---~~~   88 (216)
                      .++.+|||+|||+|.++..+++.. +...|+|+|+++.+++.+++++....... .  +..++.++.+|+....   ...
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            467899999999999999999885 45699999999999999999877640000 0  1368999999987522   345


Q ss_pred             CCccEEEecCCCC--------------chHHHHHhcCCCCeEEEEeecC
Q psy14962         89 APFDAIYLSTYVP--------------EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        89 ~~~D~i~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +.+|.|++..+-+              .++..+.++|+|||.+++.+..
T Consensus       127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            7899998765544              4678899999999999996543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.55  E-value=6.3e-15  Score=116.89  Aligned_cols=114  Identities=16%  Similarity=0.111  Sum_probs=76.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-----------CCCC--
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD-----------LLND--   71 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----------~~~~--   71 (216)
                      .+.+.+.....++.+|||+|||+|.....++...  +.+|+|+|+|+.|++.|++++......           ....  
T Consensus        60 ~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           60 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            3444443222467899999999999554444432  359999999999999998865321000           0000  


Q ss_pred             ------------CCeEEEeccCCC-CC-----CCCCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEe
Q psy14962         72 ------------GRLHLRCRDGRT-GL-----LHQAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        72 ------------~~~~~~~~d~~~-~~-----~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~  120 (216)
                                  ..+.++.+|+.. .+     ...++||+|++...+++          +++++.++|||||+|++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                        014577778765 22     12356999999988765          347889999999999996

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.55  E-value=4.1e-14  Score=115.83  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=85.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HHhCCCCCCCCCeE
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETV-------MRIRPDLLNDGRLH   75 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~~~~~~~   75 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..++...+ ..+|+|+|+++.+++.|+++.       ...++   ...++.
T Consensus       162 i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl---~~~rVe  235 (438)
T 3uwp_A          162 VAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGK---KHAEYT  235 (438)
T ss_dssp             HHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB---CCCEEE
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC---CCCCeE
Confidence            445666664  68899999999999999999998753 336999999999999998754       23331   125899


Q ss_pred             EEeccCCCCCCCC--CCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEee
Q psy14962         76 LRCRDGRTGLLHQ--APFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        76 ~~~~d~~~~~~~~--~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++++|+.......  ..||+|+++..+..     .+.++.+.|||||+|++..
T Consensus       236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          236 LERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             EEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             EEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence            9999987543322  46999998766422     4577889999999999864

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=3.5e-14  Score=111.78  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=89.2

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.|++++..+++     .++.++.+|+... ...++||
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l-----~~~~~~~~d~~~~-~~~~~~D  188 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKL-----NNVIPILADNRDV-ELKDVAD  188 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTC-----SSEEEEESCGGGC-CCTTCEE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCEEEEECChHHc-CccCCce
Confidence            367889999999999999999999853 45999999999999999999988663     5788999998765 3356899


Q ss_pred             EEEecCCC--CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYV--PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+.  ..++..+.+.|+|||++++++...
T Consensus       189 ~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          189 RVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            99999875  447788899999999999987654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.55  E-value=1.8e-15  Score=114.28  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=68.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+. ...++.+|||+|||+|..+..+++.. ++.+++++|+++.+++.|++++...+      .+++++.+|+.
T Consensus        18 ~~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~d~~   89 (215)
T 4dzr_A           18 VEEAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG------AVVDWAAADGI   89 (215)
T ss_dssp             HHHHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------------CCHHHHH
T ss_pred             HHHHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC------CceEEEEcchH
Confidence            444555553 22678899999999999999999984 46799999999999999999887643      26788888876


Q ss_pred             CCCCC----CCCccEEEecCCCC--------------------------------chHHHHHhcCCCCeE-EEEeec
Q psy14962         83 TGLLH----QAPFDAIYLSTYVP--------------------------------EIPYSILLQLKPGGR-LVCGVG  122 (216)
Q Consensus        83 ~~~~~----~~~~D~i~~~~~~~--------------------------------~~~~~~~~~L~~gG~-lv~~~~  122 (216)
                      .....    .++||+|+++.++.                                .++..+.++|+|||+ +++...
T Consensus        90 ~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A           90 EWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             HHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             hhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            52221    27899999986652                                233556689999999 555443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.54  E-value=1.6e-14  Score=105.57  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++  .        .++.+..+|   .....++||+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~--~--------~~v~~~~~d---~~~~~~~~D~   78 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK--F--------DSVITLSDP---KEIPDNSVDF   78 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH--C--------TTSEEESSG---GGSCTTCEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh--C--------CCcEEEeCC---CCCCCCceEE
Confidence            5678899999999999999999874   3999999999999999887  1        578999998   2334578999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      +++++.++|+|||++++.....
T Consensus        79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            999998875      4689999999999999976544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=1e-13  Score=101.99  Aligned_cols=108  Identities=16%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  ..++.+|||+|||+|..+..+++   +..+++++|+++.+++.+++++...+.     .++.++.+|+..
T Consensus        25 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~   94 (183)
T 2yxd_A           25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI-----KNCQIIKGRAED   94 (183)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC-----CSEEEEESCHHH
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC-----CcEEEEECCccc
Confidence            44455553  56788999999999999999988   356999999999999999999887652     579999999865


Q ss_pred             CCCCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                       ....++||+|+++.+ ..   ++..+.+.  |||.+++......
T Consensus        95 -~~~~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~~~  135 (183)
T 2yxd_A           95 -VLDKLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIVLE  135 (183)
T ss_dssp             -HGGGCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred             -cccCCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence             333468999999887 33   45666666  9999999876654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.54  E-value=1.1e-13  Score=114.89  Aligned_cols=113  Identities=16%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHH-------HHHHHHhCCCCCCCCCeE
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDA-------WETVMRIRPDLLNDGRLH   75 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a-------~~~~~~~~~~~~~~~~~~   75 (216)
                      ++.+++.+.  +.++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.|       ++++...++   ...++.
T Consensus       231 v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl---~~~nV~  304 (433)
T 1u2z_A          231 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGM---RLNNVE  304 (433)
T ss_dssp             HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB---CCCCEE
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC---CCCceE
Confidence            445555553  57899999999999999999999864 34899999999999988       777776541   125889


Q ss_pred             EEeccCCCCC----CCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEee
Q psy14962         76 LRCRDGRTGL----LHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        76 ~~~~d~~~~~----~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++.+|.....    ...++||+|+++..+.     ..+..+.++|||||++++..
T Consensus       305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          305 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             EEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            9887654221    1136799999865442     24578999999999999863

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.54  E-value=2e-14  Score=113.24  Aligned_cols=106  Identities=21%  Similarity=0.172  Sum_probs=86.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~   89 (216)
                      ..++.+|||+|||+|..+..+++..+...+|+++|+++.+++.+++++...+.     .++.++.+|+.....    ..+
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-----~~v~~~~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-----LNTIIINADMRKYKDYLLKNEI  155 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCHHHHHHHHHHTTC
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-----CcEEEEeCChHhcchhhhhccc
Confidence            57899999999999999999998764346999999999999999999988653     589999999764322    246


Q ss_pred             CccEEEecCCC------------------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYV------------------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~------------------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||+|+++.+.                        ..+++.+.++|||||++++++.+.
T Consensus       156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            79999998553                        225678889999999999987665

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.53  E-value=4.9e-14  Score=110.06  Aligned_cols=103  Identities=24%  Similarity=0.231  Sum_probs=81.1

Q ss_pred             HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC
Q psy14962          8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH   87 (216)
Q Consensus         8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (216)
                      +.+...+.++.+|||+|||+|..+..+++.   +.+++++|+|+.+++.++++..         .  .++.+|+......
T Consensus        46 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~---------~--~~~~~d~~~~~~~  111 (260)
T 2avn_A           46 SFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV---------K--NVVEAKAEDLPFP  111 (260)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC---------S--CEEECCTTSCCSC
T ss_pred             HHHHHhcCCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC---------C--CEEECcHHHCCCC
Confidence            333333457889999999999999999887   4599999999999999987632         1  2788888765555


Q ss_pred             CCCccEEEecCCCCc-------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         88 QAPFDAIYLSTYVPE-------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .++||+|++...+.+       +++++.++|+|||.+++.+++.
T Consensus       112 ~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            678999999765432       4588899999999999987664

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.53  E-value=1.9e-14  Score=110.99  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------C
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------H   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~   87 (216)
                      .++.+|||+|||+|+.+..+++.++++++++++|+++.+++.|++++...++    .++++++.+|+.....       .
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~gda~~~l~~l~~~~~~  144 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV----EHKINFIESDAMLALDNLLQGQES  144 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHHHhccCC
Confidence            4678999999999999999999875567999999999999999999988653    2479999999753211       1


Q ss_pred             CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      .++||+|+++.....   +++.+.++|+|||++++..
T Consensus       145 ~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          145 EGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence            467999999876543   5688899999999998853

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.53  E-value=1.8e-14  Score=108.96  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.|++++...++    ..+++++.+|.... ....+ ||+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~-fD~  129 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRVELQVGDPLGIAAGQRD-IDI  129 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGEEEEESCHHHHHTTCCS-EEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceEEEEEecHHHHhccCCC-CCE
Confidence            4678999999999999999998864467999999999999999999887653    24689999997532 11235 999


Q ss_pred             EEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+++.....   +++.+.++|+|||++++..
T Consensus       130 v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          130 LFMDCDVFNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             EEEETTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             EEEcCChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence            999865543   5688899999999999854

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.53  E-value=1.3e-13  Score=120.82  Aligned_cols=118  Identities=12%  Similarity=0.036  Sum_probs=91.8

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-CCCCCCeEEEeccCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD-LLNDGRLHLRCRDGR   82 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~d~~   82 (216)
                      ..+++.+.  ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++...... ..+..++.++.+|+.
T Consensus       711 e~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~  788 (950)
T 3htx_A          711 EYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL  788 (950)
T ss_dssp             HHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred             HHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence            33445554  247899999999999999999988544469999999999999999877643210 012357999999998


Q ss_pred             CCCCCCCCccEEEecCCCCch--------HHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEI--------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ......++||+|++...++++        +..+.++|||| .+++++++.
T Consensus       789 dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          789 EFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             SCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             hCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            766667889999999998763        36778999999 888877665

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.52  E-value=2.7e-14  Score=109.73  Aligned_cols=104  Identities=17%  Similarity=0.273  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-C--CCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-H--QAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~--~~~   90 (216)
                      ..++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.|++++...+.    ..++.++.+|+..... .  .++
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~  126 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGL----ESRIELLFGDALQLGEKLELYPL  126 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCGGGSHHHHTTSCC
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECCHHHHHHhcccCCC
Confidence            3578899999999999999999986 356999999999999999999887653    2469999999865321 1  468


Q ss_pred             ccEEEecCCCC---chHHHHHhcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVP---EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ||+|+++.+.+   .++..+.++|+|||++++...
T Consensus       127 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          127 FDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            99999988874   356889999999999999743

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.52  E-value=1.4e-13  Score=102.24  Aligned_cols=98  Identities=22%  Similarity=0.249  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.   +.+++++|+++.+++.++++.          .++.++..|+.......++||+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~----------~~~~~~~~d~~~~~~~~~~~D~  110 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF----------PEARWVVGDLSVDQISETDFDL  110 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTTSCCCCCCEEE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC----------CCCcEEEcccccCCCCCCceeE
Confidence            568899999999999999999887   359999999999999998763          4588999998765445678999


Q ss_pred             EEec-CCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLS-TYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~-~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++. ..+++        ++..+.++|+|||.+++.....
T Consensus       111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9998 44432        4578889999999999976554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.52  E-value=1.7e-14  Score=111.41  Aligned_cols=104  Identities=21%  Similarity=0.308  Sum_probs=84.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      ..++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.|++++...+.    ..++.++.+|+.....       
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL----ENKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHCSS
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCEEEEECCHHHHHHHHHhhcc
Confidence            45788999999999999999999875456999999999999999999887553    2458999998753211       


Q ss_pred             --------C-C-CCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         87 --------H-Q-APFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 --------~-~-~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                              . . ++||+|+++.....   +++.+.++|+|||++++..
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                    1 2 67999999877664   5588999999999999864

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.52  E-value=1.7e-14  Score=109.82  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|||+|||+|..+..+++.       +++|+++.+++.++++            ++.++.+|+.......++||+|+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~v~  107 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR------------GVFVLKGTAENLPLKDESFDFAL  107 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCTTCEEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc------------CCEEEEcccccCCCCCCCeeEEE
Confidence            4889999999999998876532       9999999999988764            47888999876555567899999


Q ss_pred             ecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +...+++      ++..+.++|+|||.+++..++..
T Consensus       108 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  143 (219)
T 1vlm_A          108 MVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  143 (219)
T ss_dssp             EESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             EcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            9988754      56888999999999999876553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.52  E-value=7.2e-14  Score=117.92  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=86.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i   94 (216)
                      ++.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++...+.     .++.++.+|+..... ..++||+|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-----~nv~~~~~D~~~~~~~~~~~fD~I  191 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-----SNVALTHFDGRVFGAAVPEMFDAI  191 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCCSTTHHHHSTTCEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEeCCHHHhhhhccccCCEE
Confidence            899999999999999999999876557999999999999999999988763     679999999865332 34679999


Q ss_pred             EecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++.+..                            .++..+.++|||||++++++++.
T Consensus       192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            9965531                            13567779999999999987654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.51  E-value=9.2e-14  Score=107.90  Aligned_cols=103  Identities=16%  Similarity=0.080  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHh---CCCCCCCCC------------------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRI---RPDLLNDGR------------------   73 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~---~~~~~~~~~------------------   73 (216)
                      ++.+|||+|||+|.++..+++.. .++.+|+|+|+|+.+++.|++++...   ++    ..+                  
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  126 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL----TARELERREQSERFGKPSYLE  126 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH----HHHHHHHHHHHHHHCCHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc----cccchhhhhhhhhcccccchh
Confidence            56799999999999999998872 13458999999999999999887653   21    001                  


Q ss_pred             -------eE-------------EEeccCCCCCC-----CCCCccEEEecCCCC---------------chHHHHHhcCCC
Q psy14962         74 -------LH-------------LRCRDGRTGLL-----HQAPFDAIYLSTYVP---------------EIPYSILLQLKP  113 (216)
Q Consensus        74 -------~~-------------~~~~d~~~~~~-----~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~  113 (216)
                             +.             +..+|+.....     ...+||+|+++.++.               .++..+.++|+|
T Consensus       127 ~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  206 (250)
T 1o9g_A          127 AAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA  206 (250)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             hhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence                   55             89999875432     334799999986642               356788999999


Q ss_pred             CeEEEEeec
Q psy14962        114 GGRLVCGVG  122 (216)
Q Consensus       114 gG~lv~~~~  122 (216)
                      ||++++...
T Consensus       207 gG~l~~~~~  215 (250)
T 1o9g_A          207 HAVIAVTDR  215 (250)
T ss_dssp             TCEEEEEES
T ss_pred             CcEEEEeCc
Confidence            999998433

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.51  E-value=3.7e-15  Score=115.03  Aligned_cols=99  Identities=17%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...++    ..++.++.+|+.... ..++||+|
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~D~v  148 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGI----ADKIEFICGDFLLLA-SFLKADVV  148 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHG-GGCCCSEE
T ss_pred             cCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC----CcCeEEEECChHHhc-ccCCCCEE
Confidence            47899999999999999999987   35999999999999999999987552    147999999986543 45689999


Q ss_pred             EecCCCCchH------HHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPEIP------YSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~~~------~~~~~~L~~gG~lv~~~  121 (216)
                      +++.++++..      ..+.++|+|||.+++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          149 FLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             EECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             EECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            9998886532      35778999999977654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.51  E-value=3.9e-14  Score=104.26  Aligned_cols=99  Identities=10%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+..+|||+|||+|.++..++... |+++|+++|+|+.|++.+++++...|.    ..++.+  .|.... ...++||
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~----~~~v~~--~d~~~~-~~~~~~D  117 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKT----TIKYRF--LNKESD-VYKGTYD  117 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCC----SSEEEE--ECCHHH-HTTSEEE
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC----CccEEE--eccccc-CCCCCcC
Confidence            45678899999999999999987763 567999999999999999999988663    124544  665433 3457799


Q ss_pred             EEEecCCCCch------HHHHHhcCCCCeEEEE
Q psy14962         93 AIYLSTYVPEI------PYSILLQLKPGGRLVC  119 (216)
Q Consensus        93 ~i~~~~~~~~~------~~~~~~~L~~gG~lv~  119 (216)
                      +|++...++.+      +..+.+.|+|||.+|-
T Consensus       118 vVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          118 VVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             EEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred             hhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence            99999998764      3578899999998876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.51  E-value=3.2e-14  Score=110.87  Aligned_cols=106  Identities=25%  Similarity=0.357  Sum_probs=83.6

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+...+.++.+|||+|||+|.++..+++. +  .+|+++|+++.+++.+++++..++.     . +++..+|.....
T Consensus       110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~-----~-v~~~~~d~~~~~  180 (254)
T 2nxc_A          110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV-----R-PRFLEGSLEAAL  180 (254)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC-----C-CEEEESCHHHHG
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEECChhhcC
Confidence            34444434578899999999999999998876 3  3999999999999999999887552     3 788888875432


Q ss_pred             CCCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~  121 (216)
                       +.++||+|+++...+   .++..+.++|+|||+++++.
T Consensus       181 -~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          181 -PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             -GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence             346799999986544   35688899999999999964

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.51  E-value=3.6e-14  Score=108.69  Aligned_cols=102  Identities=11%  Similarity=0.002  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCC-HHHHHHH---HHHHHHhCCCCCCCCCeEEEeccCCCCCCC-C
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHM-REQCEDA---WETVMRIRPDLLNDGRLHLRCRDGRTGLLH-Q   88 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~-~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~   88 (216)
                      ..++.+|||+|||+|..+..+++. .++..|+|+|+| +.+++.|   +++....+     ..++.++.+|+...+.. .
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-----~~~v~~~~~d~~~l~~~~~   95 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGG-----LSNVVFVIAAAESLPFELK   95 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-----CSSEEEECCBTTBCCGGGT
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-----CCCeEEEEcCHHHhhhhcc
Confidence            367889999999999999999875 356799999999 6676666   66655544     36799999998765321 2


Q ss_pred             CCccEEEecCCCC-----------chHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVP-----------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.+|.|+++.+.+           .++.++.++|||||++++..
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            5577777765543           24688999999999999843

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.50  E-value=2.9e-14  Score=109.15  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=84.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CC--
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQ--   88 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~--   88 (216)
                      ..++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.|++++...+.    ..+++++.+|+.....   ..  
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCeEEEEEcCHHHHHHHHHhcCC
Confidence            45678999999999999999998765467999999999999999999887653    2579999998753211   11  


Q ss_pred             -CCccEEEecCCCC---chHHHHHhcCCCCeEEEEee
Q psy14962         89 -APFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 -~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~  121 (216)
                       ++||+|+++....   .+++.+.++|+|||.+++..
T Consensus       143 ~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          143 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence             6799999987754   35788999999999999853

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.50  E-value=2.4e-14  Score=110.11  Aligned_cols=104  Identities=18%  Similarity=0.189  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCC--
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQ--   88 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~--   88 (216)
                      .++.+|||+|||+|+.+..+++..+++++++++|+++.+++.|++++...+.    ..++.++.+|+....    ..+  
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV----AEKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence            4678999999999999999999865467999999999999999999887663    246899999864221    112  


Q ss_pred             CCccEEEecCCCC---chHHHHHhcCCCCeEEEEeec
Q psy14962         89 APFDAIYLSTYVP---EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        89 ~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++||+|+++....   .+++.+.++|+|||++++...
T Consensus       147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            6799999987654   356888999999999998643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.50  E-value=4.8e-14  Score=110.02  Aligned_cols=107  Identities=17%  Similarity=0.116  Sum_probs=79.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------------CCC-----------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD------------LLN-----------   70 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------------~~~-----------   70 (216)
                      ..++.+|||+|||+|..+..+++.. . .+|+++|+++.+++.+++++...+..            ..+           
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            3567899999999999998888762 1 38999999999999999887541100            000           


Q ss_pred             -CCCe-EEEeccCCCCCC-CC---CCccEEEecCCCC----c------hHHHHHhcCCCCeEEEEeec
Q psy14962         71 -DGRL-HLRCRDGRTGLL-HQ---APFDAIYLSTYVP----E------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        71 -~~~~-~~~~~d~~~~~~-~~---~~~D~i~~~~~~~----~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                       ..++ .+..+|+..... ..   ++||+|++...++    +      ++.++.++|+|||++++...
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence             0027 899999875432 33   7899999988876    3      45788899999999999764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.50  E-value=1e-13  Score=112.62  Aligned_cols=101  Identities=20%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+      .+.+++.+|.....  .++||+|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~------~~~~~~~~d~~~~~--~~~fD~I  265 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANG------VEGEVFASNVFSEV--KGRFDMI  265 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTT------CCCEEEECSTTTTC--CSCEEEE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhC------CCCEEEEccccccc--cCCeeEE
Confidence            456799999999999999999884 45699999999999999999988755      24677888876533  5689999


Q ss_pred             EecCCCCc-----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPE-----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++.+++.           ++..+.++|+|||.+++.....
T Consensus       266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            99988763           4578889999999999976544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.50  E-value=4.7e-14  Score=118.17  Aligned_cols=105  Identities=21%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D   92 (216)
                      ..+|.+|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++...+.     . +.++.+|+..... ..++||
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-----~-v~~~~~Da~~l~~~~~~~FD  172 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-----P-LAVTQAPPRALAEAFGTYFH  172 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-----C-CEEECSCHHHHHHHHCSCEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----e-EEEEECCHHHhhhhccccCC
Confidence            57899999999999999999999876557999999999999999999998773     4 8889888754321 246899


Q ss_pred             EEEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+.                            ..++..+.++|||||++++++++.
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            99987663                            124567789999999999987665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.50  E-value=4.9e-14  Score=111.95  Aligned_cols=106  Identities=17%  Similarity=0.061  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHh---CCCcEE--EEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE--eccCCCCC--
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELV---GKTGRV--FGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR--CRDGRTGL--   85 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~---~~~~~v--~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~--   85 (216)
                      .++.+|||||||+|.++..+++.+   .++..|  +++|+|++|++.|++++....    +..++.+.  .++.....  
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~----~~~~v~~~~~~~~~~~~~~~  126 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS----NLENVKFAWHKETSSEYQSR  126 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS----SCTTEEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc----CCCcceEEEEecchhhhhhh
Confidence            456799999999998776444322   134544  999999999999999876521    12455544  44432211  


Q ss_pred             ----CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 ----LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                          ..+++||+|++...+++      .+++++++|||||++++...+.
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence                23578999999999876      4689999999999999976543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.50  E-value=3.7e-14  Score=109.38  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---C-CC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAEL---VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---L-LH   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~-~~   87 (216)
                      .++.+|||+|||+|+.+..+++.   ++++++|+++|+++.+++.|+.    .      ..+++++++|+...   . ..
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~------~~~v~~~~gD~~~~~~l~~~~  149 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D------MENITLHQGDCSDLTTFEHLR  149 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G------CTTEEEEECCSSCSGGGGGGS
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c------CCceEEEECcchhHHHHHhhc
Confidence            35689999999999999999987   4556799999999999887761    1      26799999998753   2 22


Q ss_pred             CCCccEEEecCCCCc---hHHHHHh-cCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPE---IPYSILL-QLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~---~~~~~~~-~L~~gG~lv~~~  121 (216)
                      ..+||+|+++.....   .+..+.+ +|||||++++..
T Consensus       150 ~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          150 EMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             cCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            347999998776433   4567776 999999999954

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.49  E-value=3.5e-13  Score=113.20  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~   91 (216)
                      ..++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++...+     ..++.++.+|+....  ..+++|
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-----~~~v~~~~~D~~~~~~~~~~~~f  331 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-----IKIVKPLVKDARKAPEIIGEEVA  331 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCTTCCSSSSCSSCE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-----CCcEEEEEcChhhcchhhccCCC
Confidence            5788999999999999999999986543699999999999999999998865     367999999987543  223679


Q ss_pred             cEEEecCCC----------------------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYV----------------------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~----------------------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+|+++.+.                            ..++..+.++|||||++++++++..
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            999986543                            1246788899999999999877653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.49  E-value=1.6e-13  Score=111.32  Aligned_cols=98  Identities=22%  Similarity=0.277  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++    ..++.++.+|+.....+.++||+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~  134 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKL----EDTITLIKGKIEEVHLPVEKVDV  134 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTSCCSCSCEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCC----CCcEEEEEeeHHHhcCCCCcEEE
Confidence            467899999999999999999887 2 34999999996 99999999887653    26899999998865555578999


Q ss_pred             EEecCC---C------CchHHHHHhcCCCCeEEE
Q psy14962         94 IYLSTY---V------PEIPYSILLQLKPGGRLV  118 (216)
Q Consensus        94 i~~~~~---~------~~~~~~~~~~L~~gG~lv  118 (216)
                      |++...   +      ..++..+.++|||||.++
T Consensus       135 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            998762   2      124567789999999997

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.49  E-value=2.4e-13  Score=110.69  Aligned_cols=99  Identities=20%  Similarity=0.164  Sum_probs=80.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.  +..+|+|+|++ ++++.|++++...+.    .+++.++.+|+.....+.++||+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~  136 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKL----DHVVTIIKGKVEEVELPVEKVDI  136 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSSCEEE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCC----CCcEEEEECcHHHccCCCCceEE
Confidence            457899999999999999999987  23599999999 599999999888664    35699999999876555678999


Q ss_pred             EEecCCC---------CchHHHHHhcCCCCeEEEE
Q psy14962         94 IYLSTYV---------PEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        94 i~~~~~~---------~~~~~~~~~~L~~gG~lv~  119 (216)
                      |++....         ..++..+.++|||||+++.
T Consensus       137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            9986532         1245677899999999984

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.48  E-value=1.2e-13  Score=111.58  Aligned_cols=104  Identities=18%  Similarity=0.101  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC----CCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH----QAP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~   90 (216)
                      .++.+|||+|||+|.++..+++.   +++|+++|+|+.+++.|++++..+++.   ..++.++++|+......    .++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~---~~~v~~i~~D~~~~l~~~~~~~~~  225 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMKFIQREERRGST  225 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHHHHHHHHHHTCC
T ss_pred             CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECcHHHHHHHHHhcCCC
Confidence            46789999999999999999986   349999999999999999999887631   11489999997643321    457


Q ss_pred             ccEEEecCCC----------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYV----------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~----------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|+++.+.                ..++..+.++|+|||.+++.+...
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            9999998773                124577789999999987765443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.48  E-value=8.5e-13  Score=103.92  Aligned_cols=101  Identities=19%  Similarity=0.084  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCC---chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         16 EGAKVLDIGSGS---GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        16 ~~~~vldiG~G~---G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      ...+|||+|||+   |..+..+++. .++.+|+++|+|+.|++.|++++..       ..++.++.+|+....       
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~  148 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPD  148 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccch
Confidence            347999999999   9887655554 4567999999999999999998743       257999999986421       


Q ss_pred             ----CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 ----LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                          .+.++||+|++...+++        +++++.+.|+|||+|++.....
T Consensus       149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence                22247999999887765        4578899999999999987654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.48  E-value=3.4e-13  Score=105.93  Aligned_cols=102  Identities=19%  Similarity=0.105  Sum_probs=85.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+++|.+|||+|||+|.+++.+++..  ..+|+++|+++.+++.+++++..+++    .+++.++++|+.... ..+.||
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v----~~~v~~~~~D~~~~~-~~~~~D  194 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFP-GENIAD  194 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCC-CCSCEE
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEeCcHHHhc-cccCCC
Confidence            35789999999999999999999873  35999999999999999999998875    367999999987544 357899


Q ss_pred             EEEecCCCC--chHHHHHhcCCCCeEEEEee
Q psy14962         93 AIYLSTYVP--EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        93 ~i~~~~~~~--~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .|+++.+..  .++..+.++|++||.+.+..
T Consensus       195 ~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          195 RILMGYVVRTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCcHHHHHHHHHHHcCCCCEEEEEe
Confidence            999987653  46788889999999987743

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.47  E-value=2.4e-13  Score=99.53  Aligned_cols=91  Identities=18%  Similarity=0.136  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|.++..+++.   . +|+|+|+|+.+++.      .        .+++++.+|+.... ..++||+|
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~------~--------~~~~~~~~d~~~~~-~~~~fD~i   82 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES------H--------RGGNLVRADLLCSI-NQESVDVV   82 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT------C--------SSSCEEECSTTTTB-CGGGCSEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc------c--------cCCeEEECChhhhc-ccCCCCEE
Confidence            46789999999999999999987   3 99999999999876      2        56889999987633 34789999


Q ss_pred             EecCCCC---------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVP---------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +++.++.               ..+..+.+.+ |||.+++......
T Consensus        83 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~  127 (170)
T 3q87_B           83 VFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN  127 (170)
T ss_dssp             EECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred             EECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence            9998875               2457777888 9999999775543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.47  E-value=1.3e-12  Score=107.00  Aligned_cols=102  Identities=20%  Similarity=0.162  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++.. |+.+++++|+ +.+++.|++++...++    .+++++..+|+.... +. .||+
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~-p~-~~D~  271 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGL----ADRCEILPGDFFETI-PD-GADV  271 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTTCC-CS-SCSE
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCc----CCceEEeccCCCCCC-CC-CceE
Confidence            4567899999999999999999885 5679999999 9999999999887553    368999999987332 23 7999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...+++        +++++++.|+|||++++....
T Consensus       272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  309 (369)
T 3gwz_A          272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL  309 (369)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred             EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            999988754        567889999999999996543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.47  E-value=3.8e-13  Score=109.43  Aligned_cols=100  Identities=21%  Similarity=0.166  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|++++...++    .+++.++.+|+..... .++||+
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l----~~~v~~~~~d~~~~~~-~~~~D~  119 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVEEVSL-PEQVDI  119 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTC----TTTEEEEESCTTTCCC-SSCEEE
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCC----CCcEEEEEcchhhCCC-CCceeE
Confidence            457899999999999999999886  235999999996 88999998887653    2679999999876443 357999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      |++..+..+        .+..+.++|+|||.+++..
T Consensus       120 Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          120 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             EEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            999866432        3356689999999998654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.47  E-value=1.5e-13  Score=115.03  Aligned_cols=106  Identities=21%  Similarity=0.176  Sum_probs=87.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D   92 (216)
                      ..+|.+|||+|||+|..+..++...+..+.|+++|+++.+++.+++++.+.+.     .++.++.+|...... ..++||
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-----~nv~v~~~Da~~l~~~~~~~FD  177 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-----SNAIVTNHAPAELVPHFSGFFD  177 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-----SSEEEECCCHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeCCHHHhhhhccccCC
Confidence            57899999999999999999999876567999999999999999999998774     678899988754321 246799


Q ss_pred             EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++.+..                            .++..+.++|||||++++++++.
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            999987720                            24577789999999999987765

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.46  E-value=2.2e-13  Score=112.31  Aligned_cols=104  Identities=19%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~   91 (216)
                      ..++|.+|||+|||+|.++..+++.   ++.|+++|+|+.+++.|++++..+++      ..++.++|+..... ..+.|
T Consensus       211 ~~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~------~~~~~~~D~~~~l~~~~~~f  281 (393)
T 4dmg_A          211 MVRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGL------RVDIRHGEALPTLRGLEGPF  281 (393)
T ss_dssp             TCCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCHHHHHHTCCCCE
T ss_pred             HhcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCC------CCcEEEccHHHHHHHhcCCC
Confidence            3456999999999999999999986   34699999999999999999988764      23567888753221 12349


Q ss_pred             cEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+|+++.+.               ..++..+.++|+|||++++...+..
T Consensus       282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            999999875               2355777899999999997665553

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.46  E-value=9e-13  Score=106.42  Aligned_cols=103  Identities=20%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.. ++.+++++|++ .+++.|++++...++    ..++++..+|+.....+ ..||+|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~D~v  236 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGV----ASRYHTIAGSAFEVDYG-NDYDLV  236 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTC----GGGEEEEESCTTTSCCC-SCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCC----CcceEEEecccccCCCC-CCCcEE
Confidence            677899999999999999999885 45699999999 999999999877653    24699999998754333 349999


Q ss_pred             EecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++...+++        +++++.+.|+|||++++.....
T Consensus       237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            99888764        4578889999999998876543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.46  E-value=3.5e-13  Score=101.00  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      +.++.+|||+|||+|.++..+++..++ +.+|+|+|+++..         .       ..++.++.+|+....       
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-------~~~v~~~~~d~~~~~~~~~~~~   83 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-------IPNVYFIQGEIGKDNMNNIKNI   83 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-------CTTCEEEECCTTTTSSCCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-------CCCceEEEccccchhhhhhccc
Confidence            578899999999999999999988642 5799999999831         0       256889999987543       


Q ss_pred             ------------------CCCCCccEEEecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 ------------------LHQAPFDAIYLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ------------------~~~~~~D~i~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                                        ...++||+|+++...+.                 ++..+.++|+|||.+++.+...
T Consensus        84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                              23468999999876543                 3466889999999999876554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.45  E-value=1.9e-13  Score=99.91  Aligned_cols=97  Identities=19%  Similarity=0.191  Sum_probs=78.0

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      .+.++.+|||+|||+|..+..+++..+++.+++++|+++ ++..               .++.+..+|+....       
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~   82 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhc
Confidence            357889999999999999999999876667999999998 6421               46889999987543       


Q ss_pred             -CCCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 -LHQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                       ...++||+|+++.+++                 .++..+.++|+|||.+++......
T Consensus        83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence             3456899999987753                 356788899999999999776554

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.45  E-value=1.2e-12  Score=107.27  Aligned_cols=101  Identities=26%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.|++++...++    ..++.++.+|+....+ . .||+
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~-~-~~D~  251 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFKPLP-V-TADV  251 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCS-C-CEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCCcCC-C-CCCE
Confidence            4678899999999999999999885 4679999999 9999999999887553    2479999999875332 2 4999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++        +++++.++|+|||++++...
T Consensus       252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999888754        46788899999999998765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.45  E-value=2.8e-13  Score=111.28  Aligned_cols=100  Identities=23%  Similarity=0.170  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++..  ..+|+|+|++ .+++.|++++...++    .+++.++.+|+.....+ ++||+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~-~~~D~  132 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNL----DHIVEVIEGSVEDISLP-EKVDV  132 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTC----TTTEEEEESCGGGCCCS-SCEEE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCC----CCeEEEEECchhhcCcC-CcceE
Confidence            4678999999999999999999872  2399999999 999999999988664    35699999998765443 78999


Q ss_pred             EEecCCCC---------chHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVP---------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~---------~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |++.....         .++..+.++|+|||.+++..
T Consensus       133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            99965321         14577789999999998753

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.45  E-value=9.6e-13  Score=107.64  Aligned_cols=102  Identities=17%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      ....+|||||||+|..+..+++.. |+.+++++|+ +.+++.|++++...++    ..++.++.+|+....  .+ ++||
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~p-~~~D  250 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSG----SERIHGHGANLLDRDVPFP-TGFD  250 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTT----GGGEEEEECCCCSSSCCCC-CCCS
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCc----ccceEEEEccccccCCCCC-CCcC
Confidence            356799999999999999999885 5679999999 9999999998876442    257999999987642  22 6799


Q ss_pred             EEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|++...+++        +++++++.|+|||++++....
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            9999888864        467889999999999986543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.45  E-value=2.7e-12  Score=104.80  Aligned_cols=103  Identities=15%  Similarity=0.083  Sum_probs=84.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.|++++...++    ..++.++.+|+.....+.  +|+
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~--~D~  259 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV----ADRMRGIAVDIYKESYPE--ADA  259 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC----TTTEEEEECCTTTSCCCC--CSE
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCC----CCCEEEEeCccccCCCCC--CCE
Confidence            4678899999999999999999885 4679999999 9999999999887553    256999999987654333  499


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++        +++++.+.|+|||++++.....
T Consensus       260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred             EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            999888754        3578889999999998865443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.45  E-value=7.4e-13  Score=106.87  Aligned_cols=99  Identities=24%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++...++    .+++.++.+|+.....+.++||+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~  108 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGF----SDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTC----TTTEEEEESCTTTSCCSSSCEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCC----CCCEEEEECchhhccCCCCcccE
Confidence            457889999999999999998886 2 3499999999 699999999887654    35799999998765555578999


Q ss_pred             EEecCCCC---------chHHHHHhcCCCCeEEEE
Q psy14962         94 IYLSTYVP---------EIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        94 i~~~~~~~---------~~~~~~~~~L~~gG~lv~  119 (216)
                      |++.....         .++..+.++|+|||.++.
T Consensus       109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            99875421         244667799999999974

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.44  E-value=1.5e-12  Score=105.10  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=84.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.. |+.+++++|+ +.+++.|++++...++    ..++++..+|+.... +. +||+|
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~-p~-~~D~v  239 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGL----SGRAQVVVGSFFDPL-PA-GAGGY  239 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCC-CC-SCSEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCc----CcCeEEecCCCCCCC-CC-CCcEE
Confidence            456799999999999999999885 4679999999 9999999999887553    368999999987332 22 79999


Q ss_pred             EecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++...+++        +++++++.|+|||++++.....
T Consensus       240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            99988764        4578889999999999976544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.43  E-value=3.9e-12  Score=104.38  Aligned_cols=102  Identities=14%  Similarity=0.051  Sum_probs=83.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D   92 (216)
                      .++.+|||+| |+|.++..+++. ++..+|+++|+++.+++.|++++...++     .+++++.+|+.....  ..++||
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~~v~~~~~D~~~~l~~~~~~~fD  243 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGY-----EDIEIFTFDLRKPLPDYALHKFD  243 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTC-----CCEEEECCCTTSCCCTTTSSCBS
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCEEEEEChhhhhchhhccCCcc
Confidence            3688999999 999999999876 3446999999999999999999988763     489999999876332  245899


Q ss_pred             EEEecCCCC-----chHHHHHhcCCCCe-EEEEeecC
Q psy14962         93 AIYLSTYVP-----EIPYSILLQLKPGG-RLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~-----~~~~~~~~~L~~gG-~lv~~~~~  123 (216)
                      +|+++.++.     .++..+.++|+||| .+++.+.+
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            999998774     35688899999999 44666655

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.43  E-value=6e-13  Score=101.38  Aligned_cols=96  Identities=26%  Similarity=0.356  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D   92 (216)
                      .++.+|||+|||+|..+..+++. +  .+++++|+++.+++.++++.            .++..+|+..  ....+++||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~fD   95 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMPYEEEQFD   95 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCCSCTTCEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCCCCCCccC
Confidence            57889999999999999999887 3  59999999999998887531            3678888764  233457899


Q ss_pred             EEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|++...+++      ++..+.++|+|||.+++.+++..
T Consensus        96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  134 (230)
T 3cc8_A           96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVS  134 (230)
T ss_dssp             EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            9999888755      45788899999999999877654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.43  E-value=4.5e-13  Score=108.21  Aligned_cols=106  Identities=21%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--CCCCCCCCCeEEEeccCCCCC--CCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI--RPDLLNDGRLHLRCRDGRTGL--LHQAP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~~--~~~~~   90 (216)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...  +   +...+++++.+|+....  ...++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~g---l~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIG---YEDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG---GGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc---cCCCcEEEEECCHHHHHHhccCCC
Confidence            456899999999999999999873 3569999999999999999987642  1   11357999999975421  12468


Q ss_pred             ccEEEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|+++...          ..+++.+.++|+|||.+++...++
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  238 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  238 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            9999997652          236689999999999999975444

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.43  E-value=2.3e-12  Score=105.11  Aligned_cols=102  Identities=23%  Similarity=0.187  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.|++++...++    ..++.++.+|+..... . .||+
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~-~-~~D~  252 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEPLP-R-KADA  252 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSCCS-S-CEEE
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCC----CCceEEEeCCCCCCCC-C-CccE
Confidence            4678899999999999999999885 4679999999 9999999999887553    2489999999875332 2 4999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...+++        +++++.++|+|||++++....
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999888754        567889999999999987554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=106.94  Aligned_cols=97  Identities=29%  Similarity=0.274  Sum_probs=76.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+|++|||||||+|.+++.+++..  ..+|+++|.++ ++..|++.+..+++    .+++.++.+|++....+ +++|+|
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~----~~~i~~i~~~~~~~~lp-e~~Dvi  153 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGL----EDRVHVLPGPVETVELP-EQVDAI  153 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTC----TTTEEEEESCTTTCCCS-SCEEEE
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCC----CceEEEEeeeeeeecCC-ccccEE
Confidence            478999999999999998888763  23899999986 88999999888776    37899999998765443 579999


Q ss_pred             EecCCC-----C----chHHHHHhcCCCCeEEEE
Q psy14962         95 YLSTYV-----P----EIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        95 ~~~~~~-----~----~~~~~~~~~L~~gG~lv~  119 (216)
                      ++....     +    .++....++|+|||.++-
T Consensus       154 vsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          154 VSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             ECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             EeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence            984331     1    133555689999999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.41  E-value=1.1e-12  Score=103.28  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      ..+.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+...+++++.+|+.... ...++||+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~-~~~~~rv~v~~~D~~~~l~~~~~~fD~  151 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG-KLDDPRVDVQVDDGFMHIAKSENQYDV  151 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT-TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhcc-ccCCCceEEEECcHHHHHhhCCCCeeE
Confidence            356899999999999999998873 245999999999999999998754210 012368999999986422 12468999


Q ss_pred             EEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++...+          .+++.+.+.|+|||.+++...++
T Consensus       152 Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~  192 (275)
T 1iy9_A          152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (275)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            99987652          46789999999999999986554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.41  E-value=3.8e-12  Score=100.55  Aligned_cols=107  Identities=13%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeC-CHHHHHHHHHHH-----HHhCCCCCCCCCeEEEeccCCCCC---
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH-MREQCEDAWETV-----MRIRPDLLNDGRLHLRCRDGRTGL---   85 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~-~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~d~~~~~---   85 (216)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+ ++.+++.|++++     ...++......++.+...|.....   
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            57889999999999999988876 2 249999999 899999999998     332210000036778766644321   


Q ss_pred             C---CCCCccEEEecCCCCc------hHHHHHhcCC---C--CeEEEEeecC
Q psy14962         86 L---HQAPFDAIYLSTYVPE------IPYSILLQLK---P--GGRLVCGVGK  123 (216)
Q Consensus        86 ~---~~~~~D~i~~~~~~~~------~~~~~~~~L~---~--gG~lv~~~~~  123 (216)
                      .   ..++||+|++...+.+      +++.+.++|+   |  ||.+++...+
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence            1   2468999998666543      5688889999   9  9988775443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.41  E-value=1.4e-12  Score=106.07  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=84.1

Q ss_pred             CCC-CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCc
Q psy14962         14 IQE-GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPF   91 (216)
Q Consensus        14 ~~~-~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~   91 (216)
                      +.+ +.+|||+|||+|..+..+++.. |+.+++++|+ +.+++.++++....+.    ..++.++.+|+..... ..+.|
T Consensus       176 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~  249 (352)
T 3mcz_A          176 VFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDL----GGRVEFFEKNLLDARNFEGGAA  249 (352)
T ss_dssp             GGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC----GGGEEEEECCTTCGGGGTTCCE
T ss_pred             CcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCC----CCceEEEeCCcccCcccCCCCc
Confidence            345 7899999999999999999885 4679999999 8899999998877543    2579999999875431 24569


Q ss_pred             cEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|++...+++        +++++++.|+|||++++....
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          250 DVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            99999888764        457888999999999986543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.41  E-value=6.8e-13  Score=105.61  Aligned_cols=108  Identities=19%  Similarity=0.146  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      ..+.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+...+++++.+|+.... ...++||+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD~  166 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKNEFDV  166 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc-ccCCCceEEEECcHHHHHhhCCCCceE
Confidence            356899999999999999999874 346999999999999999998754100 011368999999975322 22467999


Q ss_pred             EEecCCCC-----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP-----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++...+           .+++.+.+.|+|||.+++...++
T Consensus       167 Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  208 (296)
T 1inl_A          167 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  208 (296)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence            99876433           35689999999999999987654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.41  E-value=7.1e-13  Score=105.83  Aligned_cols=106  Identities=22%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--CCCCCCCCCeEEEeccCCCCC-CCCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI--RPDLLNDGRLHLRCRDGRTGL-LHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~~-~~~~~~   91 (216)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...  +   +...+++++.+|+.... ...++|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~---~~~~rv~v~~~Da~~~l~~~~~~f  169 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIG---YSSSKLTLHVGDGFEFMKQNQDAF  169 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG---GGCTTEEEEESCHHHHHHTCSSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcc---cCCCcEEEEECcHHHHHhhCCCCc
Confidence            456899999999999999999873 3469999999999999999987541  1   11368999999975321 234689


Q ss_pred             cEEEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|+++...+          .+++.+.++|+|||.+++....+
T Consensus       170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  212 (304)
T 2o07_A          170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ  212 (304)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCc
Confidence            9999876642          36789999999999999977443

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.40  E-value=5.9e-13  Score=109.63  Aligned_cols=102  Identities=22%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPF   91 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~   91 (216)
                      ++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++++..++.     .++.++.+|+.....    ...+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~-----~~~~~~~~d~~~~~~~~~~~~~~f  280 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLLRRLEKEGERF  280 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEECCHHHHHHHHHhcCCCe
Confidence            7889999999999999999987   34999999999999999999988663     458999999764322    14689


Q ss_pred             cEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+|+++.+.               ..++..+.++|+|||.+++++.+..
T Consensus       281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            999998775               1245778899999999999887654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.40  E-value=1.7e-12  Score=108.40  Aligned_cols=104  Identities=24%  Similarity=0.336  Sum_probs=84.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~   91 (216)
                      ..++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.+++++...+      .++.++.+|+....  ...++|
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g------~~~~~~~~D~~~~~~~~~~~~f  316 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLG------MKATVKQGDGRYPSQWCGEQQF  316 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTT------CCCEEEECCTTCTHHHHTTCCE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcC------CCeEEEeCchhhchhhcccCCC
Confidence            57889999999999999999999854 3699999999999999999998865      24788999987543  234679


Q ss_pred             cEEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|+++.+..                            .++..+.++|||||++++++++.
T Consensus       317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            9999876531                            34577889999999999987655

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.40  E-value=1e-12  Score=111.09  Aligned_cols=100  Identities=21%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|.++..+++.  +..+|+++|+++ +++.|++++...++    ..++.++.+|+..... .++||+
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl----~~~v~~~~~d~~~~~~-~~~fD~  227 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNL----TDRIVVIPGKVEEVSL-PEQVDI  227 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTC----TTTEEEEESCTTTCCC-SSCEEE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCC----CCcEEEEECchhhCcc-CCCeEE
Confidence            356889999999999999988875  345999999998 99999999888664    3689999999876433 357999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      |++..+...        .+..+.++|+|||.+++..
T Consensus       228 Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          228 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             EECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999776332        2345679999999998643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.40  E-value=7.3e-13  Score=109.14  Aligned_cols=105  Identities=16%  Similarity=0.057  Sum_probs=83.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCC-CeEEEeccCCCCCC----CCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG-RLHLRCRDGRTGLL----HQA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~----~~~   89 (216)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.|++++..+++    .. ++.++.+|+.....    ...
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~----~~~~v~~~~~D~~~~l~~~~~~~~  284 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHL----DMANHQLVVMDVFDYFKYARRHHL  284 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTC----CCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCC----CccceEEEECCHHHHHHHHHHhCC
Confidence            578899999999999999999862  23899999999999999999988763    12 79999999764221    135


Q ss_pred             CccEEEecCCCC-----c----------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         90 PFDAIYLSTYVP-----E----------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        90 ~~D~i~~~~~~~-----~----------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +||+|+++.+..     .          ++..+.++|+|||.+++++.+..
T Consensus       285 ~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          285 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            799999987762     1          23456799999999999887664

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.40  E-value=2.4e-13  Score=107.48  Aligned_cols=106  Identities=21%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC-------CCCCeEEEeccCCCCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL-------NDGRLHLRCRDGRTGLLH   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~   87 (216)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.|++++ ... ..+       ...+++++.+|+......
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~-~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KID-NGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTT-TTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhc-cccccccccCCCCcEEEEECchHHHhcc
Confidence            45789999999999999999987  3569999999999999999987 320 001       136799999997532111


Q ss_pred             CCCccEEEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         88 QAPFDAIYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        88 ~~~~D~i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .++||+|+++.+.          ..+++.+.++|+|||.+++...++
T Consensus       150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~  196 (281)
T 1mjf_A          150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV  196 (281)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            4679999998764          235688999999999999976544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.40  E-value=5.4e-13  Score=106.57  Aligned_cols=108  Identities=22%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--CCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--HQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D   92 (216)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .....+++++.+|+.....  ..++||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISR-SLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhc-ccCCCcEEEEECcHHHHHHhccCCcee
Confidence            567899999999999999999863 346999999999999999988642100 0113679999999764332  356899


Q ss_pred             EEEecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|+++...+          .+++.+.++|+|||++++...++
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            999977542          35688999999999999987654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.40  E-value=2.4e-12  Score=103.99  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=82.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.+ .+|||+|||+|..+..+++.. ++.+++++|+ +.+++.|++++...++    ..++.++.+|+.... + ++||+
T Consensus       166 ~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~-~-~~~D~  236 (334)
T 2ip2_A          166 FRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLA----GERVSLVGGDMLQEV-P-SNGDI  236 (334)
T ss_dssp             CTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHH----TTSEEEEESCTTTCC-C-SSCSE
T ss_pred             CCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCC----CCcEEEecCCCCCCC-C-CCCCE
Confidence            344 899999999999999999885 4669999999 9999999988765432    257999999987632 2 57999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...+++        +++++++.|+|||++++....
T Consensus       237 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          237 YLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            999988863        567889999999999997543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.40  E-value=2.1e-12  Score=101.41  Aligned_cols=105  Identities=21%  Similarity=0.268  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCCch----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHh----CC------------CCC-C-
Q psy14962         16 EGAKVLDIGSGSGF----MSCVFAELVGK---TGRVFGVEHMREQCEDAWETVMRI----RP------------DLL-N-   70 (216)
Q Consensus        16 ~~~~vldiG~G~G~----~~~~l~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~----~~------------~~~-~-   70 (216)
                      ++.+|+|+|||||.    +++.+++..+.   +.+|+|+|+|+.+++.|++.....    ++            ... . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45789999999998    56666666442   359999999999999999863100    00            000 0 


Q ss_pred             --------CCCeEEEeccCCCCCCC-CCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         71 --------DGRLHLRCRDGRTGLLH-QAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        71 --------~~~~~~~~~d~~~~~~~-~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                              ..++.|...|+.....+ .++||+|+|...+.+        ++..+.+.|+|||++++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                    03689999998764322 468999999888743        457888999999999884

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.39  E-value=7.9e-13  Score=102.79  Aligned_cols=81  Identities=12%  Similarity=0.029  Sum_probs=65.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CCC---CC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LLH---QA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~   89 (216)
                      ++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|++++...++    ..++.++.+|+...   ...   ++
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~  139 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDALKEESEI  139 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCC----CccEEEEEcchhhhhhhhhhcccCC
Confidence            57799999999999999988875 246999999999999999999988653    24599999996541   222   25


Q ss_pred             CccEEEecCCCC
Q psy14962         90 PFDAIYLSTYVP  101 (216)
Q Consensus        90 ~~D~i~~~~~~~  101 (216)
                      +||+|+++.++.
T Consensus       140 ~fD~i~~npp~~  151 (254)
T 2h00_A          140 IYDFCMCNPPFF  151 (254)
T ss_dssp             CBSEEEECCCCC
T ss_pred             cccEEEECCCCc
Confidence            799999997754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.39  E-value=1.8e-12  Score=102.66  Aligned_cols=89  Identities=19%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++....+.    ..+++++.+|+.
T Consensus        17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~D~~   87 (285)
T 1zq9_A           17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPV----ASKLQVLVGDVL   87 (285)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEESCTT
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCC----CCceEEEEccee
Confidence            455666654  567889999999999999999988   34999999999999999998764321    147999999987


Q ss_pred             CCCCCCCCccEEEecCCCCc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~  102 (216)
                      ....  ..||+|+++.++..
T Consensus        88 ~~~~--~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           88 KTDL--PFFDTCVANLPYQI  105 (285)
T ss_dssp             TSCC--CCCSEEEEECCGGG
T ss_pred             cccc--hhhcEEEEecCccc
Confidence            5433  36999999887654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=4.3e-13  Score=107.02  Aligned_cols=101  Identities=24%  Similarity=0.248  Sum_probs=80.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCccEEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDAIY   95 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~   95 (216)
                      .+|||||||+|.++..+++.. ++.+++++|+++.+++.|++++...     ...+++++.+|+....  ...++||+|+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~-----~~~rv~v~~~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP-----RAPRVKIRVDDARMVAESFTPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC-----CTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc-----CCCceEEEECcHHHHHhhccCCCCCEEE
Confidence            499999999999999999864 4569999999999999999986431     1368999999986432  2346899999


Q ss_pred             ecCCCC----------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVP----------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ++...+          .+++.++++|+|||++++.....
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            975432          35689999999999999987643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.38  E-value=1.8e-12  Score=104.98  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++.. ++.   ..+|+++|+++.+++.|++++..+++    ..++.++.+|+....   ++||+
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v~~~~~D~~~~~---~~fD~  261 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKL----EHKIIPILSDVREVD---VKGNR  261 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCGGGCC---CCEEE
T ss_pred             cCCCCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCC----CCcEEEEECChHHhc---CCCcE
Confidence            46789999999999999999 772   45999999999999999999988663    257999999987654   67999


Q ss_pred             EEecCCC--CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV--PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+.  ..++..+.++|+|||.+++....+
T Consensus       262 Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          262 VIMNLPKFAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEECCTTTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             EEECCcHhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            9998664  347788999999999998876554

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.38  E-value=1.3e-12  Score=106.50  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +....+|+|+|||+|..+..++++. |+.+++..|. |.+++.|+++....+     .++++++.+|+...+.+  .+|+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~~~~~--~~D~  247 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFKDPLP--EADL  247 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTTSCCC--CCSE
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCccccCCCC--CceE
Confidence            4566799999999999999999985 5678898997 889998988765432     47899999998755433  4799


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +++...++.        +++++++.|+|||++++...
T Consensus       248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            999988865        46888999999999998653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.38  E-value=4.3e-12  Score=100.57  Aligned_cols=91  Identities=15%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      ++..+++.+.  +.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++..       ..+++++++|+
T Consensus        38 i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~-------~~~v~vi~gD~  105 (295)
T 3gru_A           38 FVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL-------YNNIEIIWGDA  105 (295)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH-------CSSEEEEESCT
T ss_pred             HHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc-------CCCeEEEECch
Confidence            3456666664  578899999999999999999988   35999999999999999998864       36899999999


Q ss_pred             CCCCCCCCCccEEEecCCCCchH
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIP  104 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~  104 (216)
                      ........+||.|+++.++....
T Consensus       106 l~~~~~~~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A          106 LKVDLNKLDFNKVVANLPYQISS  128 (295)
T ss_dssp             TTSCGGGSCCSEEEEECCGGGHH
T ss_pred             hhCCcccCCccEEEEeCcccccH
Confidence            86555556799999998876543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.37  E-value=1.3e-12  Score=107.15  Aligned_cols=101  Identities=11%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCC-----
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQ-----   88 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~-----   88 (216)
                      +.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++++..+++     .++.++.+|+....   ...     
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~-----~~v~~~~~d~~~~~~~~~~~~~~~~  285 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI-----DNVQIIRMAAEEFTQAMNGVREFNR  285 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC-----CSEEEECCCSHHHHHHHSSCCCCTT
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECCHHHHHHHHhhcccccc
Confidence            678999999999999998875   34999999999999999999988663     68999999975321   111     


Q ss_pred             --------CCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         89 --------APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        89 --------~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                              .+||+|+++.+...+...+.+.|+++|.+++...++.
T Consensus       286 l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~  330 (369)
T 3bt7_A          286 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPE  330 (369)
T ss_dssp             GGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHH
T ss_pred             ccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHH
Confidence                    3799999999887677778888889998888776664

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.37  E-value=1.1e-12  Score=108.41  Aligned_cols=105  Identities=22%  Similarity=0.240  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~   90 (216)
                      +++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..+++    ..++.++.+|+.....    ..++
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v~~~~~d~~~~~~~~~~~~~~  289 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEKLQKKGEK  289 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEECCHHHHHHHHHhhCCC
Confidence            47899999999999999999986 2 34999999999999999999988663    1279999999764322    2467


Q ss_pred             ccEEEecCCCC---------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVP---------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||+|+++.+..               .++..+.++|+|||.+++.+.+..
T Consensus       290 fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          290 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            99999987751               245778899999999988877653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.37  E-value=8.7e-12  Score=103.83  Aligned_cols=99  Identities=20%  Similarity=0.193  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++++..+++     . +.++.+|+......  +||+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl-----~-v~~~~~d~~~~~~~--~fD~  356 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNV-----D-AEFEVASDREVSVK--GFDT  356 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTC-----C-EEEEECCTTTCCCT--TCSE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEECChHHcCcc--CCCE
Confidence            467889999999999999999986   34999999999999999999987663     4 89999998765432  7999


Q ss_pred             EEecCCCCc----hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE----IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+...    +++.+ +.|+|+|.+++++...
T Consensus       357 Vv~dPPr~g~~~~~~~~l-~~l~p~givyvsc~p~  390 (425)
T 2jjq_A          357 VIVDPPRAGLHPRLVKRL-NREKPGVIVYVSCNPE  390 (425)
T ss_dssp             EEECCCTTCSCHHHHHHH-HHHCCSEEEEEESCHH
T ss_pred             EEEcCCccchHHHHHHHH-HhcCCCcEEEEECChH
Confidence            999988532    33444 4589999999987544

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.37  E-value=1.7e-12  Score=106.48  Aligned_cols=104  Identities=17%  Similarity=0.062  Sum_probs=81.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|.++..+++.. +.++|+|+|+++.+++.|++++...++    .+++.+..+|+.......++||+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl----~~~i~~~~~D~~~~~~~~~~fD~  289 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGV----LDKIKFIQGDATQLSQYVDSVDF  289 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTC----GGGCEEEECCGGGGGGTCSCEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCC----CCceEEEECChhhCCcccCCcCE
Confidence            4678999999999999999999873 334899999999999999999988663    25799999998866555578999


Q ss_pred             EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.++..              +++.+.++|  +|.+++.+.++
T Consensus       290 Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~  332 (373)
T 3tm4_A          290 AISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEK  332 (373)
T ss_dssp             EEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCH
T ss_pred             EEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCH
Confidence            999888532              346677777  56665555544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.37  E-value=1.4e-13  Score=105.86  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRT   83 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~   83 (216)
                      .+++.+.. ..++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.++++......  ....++.+.. .|...
T Consensus        27 ~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~~~~~--~~~~~~~~~~~~~~~~  101 (232)
T 3opn_A           27 KALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDERVVV--MEQFNFRNAVLADFEQ  101 (232)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCTTEEE--ECSCCGGGCCGGGCCS
T ss_pred             HHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCccccc--cccceEEEeCHhHcCc
Confidence            44444432 235679999999999999999987 2 24999999999999987664221000  0001222222 22211


Q ss_pred             CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .......||+++++.  ..++..+.++|||||.+++.+
T Consensus       102 ~~~d~~~~D~v~~~l--~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          102 GRPSFTSIDVSFISL--DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CCCSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCEEEEEEEhhhH--HHHHHHHHHhccCCCEEEEEE
Confidence            111223455544432  667899999999999999865

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.37  E-value=1e-12  Score=105.31  Aligned_cols=108  Identities=21%  Similarity=0.129  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+...+++++.+|+.... ...++||+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~-~~~~~rv~~~~~D~~~~l~~~~~~fD~  184 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFDV  184 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhcc-ccCCCCEEEEEChHHHHHHhcCCCceE
Confidence            456899999999999999999873 356999999999999999998754200 011367999999975422 13568999


Q ss_pred             EEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++...          ..+++.+.++|+|||.+++...++
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~  225 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  225 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCc
Confidence            9987742          346789999999999999976444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.37  E-value=1.5e-11  Score=98.28  Aligned_cols=105  Identities=16%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~   90 (216)
                      +.+|.+|||+|||+|..+..+++.+++.+.|+++|+++.+++.+++++.+.+     ..++.++.+|+......   ..+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-----~~~v~~~~~D~~~~~~~~~~~~~  174 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLAVSPSDPRYHE  174 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGSCTTCGGGTT
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEeCChHhcCccccccCC
Confidence            5789999999999999999999987656799999999999999999998866     36899999998654322   157


Q ss_pred             ccEEEecCCCC--------------------c----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYVP--------------------E----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~~--------------------~----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||.|+++.+..                    .          ++..+.++++ ||++++++.+.
T Consensus       175 fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          175 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             CCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            99999865530                    0          2334445676 99999877665

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.36  E-value=8.2e-12  Score=104.40  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=85.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  ..++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.|++++..+++     .++.++.+|+.
T Consensus       275 ~~~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v~f~~~d~~  344 (433)
T 1uwv_A          275 VARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL-----QNVTFYHENLE  344 (433)
T ss_dssp             HHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCTT
T ss_pred             HHHHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEECCHH
Confidence            344555553  457789999999999999999987   45999999999999999999988663     58999999987


Q ss_pred             CCCC----CCCCccEEEecCCCCch---HHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLL----HQAPFDAIYLSTYVPEI---PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~----~~~~~D~i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....    ..++||+|+++.+....   .+.+. .++|++.+++++...
T Consensus       345 ~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc~p~  392 (433)
T 1uwv_A          345 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSCNPA  392 (433)
T ss_dssp             SCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEESCHH
T ss_pred             HHhhhhhhhcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEECChH
Confidence            5332    24679999999886543   33333 368999888877543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.36  E-value=1.1e-12  Score=108.42  Aligned_cols=106  Identities=20%  Similarity=0.098  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~   90 (216)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++..+++.   ..++.++.+|+.....    ...+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~---~~~v~~~~~D~~~~~~~~~~~~~~  293 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCC---ccceEEEECCHHHHHHHHHhcCCC
Confidence            578899999999999999999862  349999999999999999999876520   1278999999764322    1457


Q ss_pred             ccEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||+|+++.+.               ..++..+.+.|+|||++++++.+..
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            9999999765               1245678899999999999887654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.36  E-value=9.5e-14  Score=115.54  Aligned_cols=98  Identities=17%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-E-EEeccCCCCCCCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-H-LRCRDGRTGLLHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~~d~~~~~~~~~~~   91 (216)
                      +.++.+|||+|||+|.++..+++.   +.+|+|+|+|+.+++.|+++    +.     ... . +...+.......+++|
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~-----~~~~~~~~~~~~~~l~~~~~~f  172 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GI-----RVRTDFFEKATADDVRRTEGPA  172 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TC-----CEECSCCSHHHHHHHHHHHCCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CC-----CcceeeechhhHhhcccCCCCE
Confidence            457889999999999999999886   45999999999999988765    11     111 0 1111211111234789


Q ss_pred             cEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|++...+++      +++.+.++|||||++++.+++
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99999999876      468999999999999998765

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.35  E-value=1.4e-12  Score=104.61  Aligned_cols=108  Identities=21%  Similarity=0.220  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++...+...+...+++++.+|+.... ...++||+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence            456899999999999999999874 3469999999999999999987541100001267999999976422 13568999


Q ss_pred             EEecCCCCc-------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE-------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~-------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+++...+.             +++.+.++|+|||.+++...+
T Consensus       155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999866533             468899999999999997644

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.35  E-value=5.4e-12  Score=99.55  Aligned_cols=96  Identities=19%  Similarity=0.120  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE-eccCCCCC---CCCCCc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR-CRDGRTGL---LHQAPF   91 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~d~~~~~---~~~~~~   91 (216)
                      ++.+|||+|||||.++..+++..  ..+|+|+|+++.|++.+.+.          ..++... ..++....   .+..+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~----------~~rv~~~~~~ni~~l~~~~l~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQ----------DDRVRSMEQYNFRYAEPVDFTEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHT----------CTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHh----------CcccceecccCceecchhhCCCCCC
Confidence            57899999999999999888872  34999999999999875432          1233222 22322111   123459


Q ss_pred             cEEEecCCCCc---hHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|+++..+.+   ++..+.++|+|||.+++.+.+
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lvkP  187 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVALVKP  187 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEECG
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEECc
Confidence            99998877654   678999999999999997533

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.34  E-value=7.4e-12  Score=101.65  Aligned_cols=103  Identities=19%  Similarity=0.143  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCC----cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKT----GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (216)
                      .++.+|||+|||+|.++..+++.....    .+++|+|+++.+++.|+.++...+      .++.+..+|..... ..++
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g------~~~~i~~~D~l~~~-~~~~  201 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR------QKMTLLHQDGLANL-LVDP  201 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT------CCCEEEESCTTSCC-CCCC
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC------CCceEEECCCCCcc-ccCC
Confidence            456799999999999999998876322    689999999999999999887765      26889999976533 3467


Q ss_pred             ccEEEecCCCCc------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYVPE------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~~~------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|+++.++..                        ++..+.+.|+|||++++.+++.
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            999999988522                        4677889999999999987543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.34  E-value=1.2e-12  Score=103.46  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+. .+...+++++.+|+..... ..++||+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYDV  154 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhcc-ccCCCcEEEEECChHHHHHhCCCCceE
Confidence            456899999999999999998763 346999999999999999998653210 0113679999999764221 2567999


Q ss_pred             EEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++...          ..+++.+.+.|+|||.+++...++
T Consensus       155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~  195 (283)
T 2i7c_A          155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  195 (283)
T ss_dssp             EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            9996542          245688999999999999986654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.34  E-value=3.1e-12  Score=95.31  Aligned_cols=96  Identities=23%  Similarity=0.228  Sum_probs=72.7

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCC--------cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE-eccCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKT--------GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR-CRDGRT   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~--------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~d~~~   83 (216)
                      .+.++.+|||+|||+|.++..+++..+..        .+|+++|+++..           .     ..++.++ .+|+..
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~-----~~~~~~~~~~d~~~   82 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P-----LEGATFLCPADVTD   82 (196)
T ss_dssp             CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C-----CTTCEEECSCCTTS
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c-----CCCCeEEEeccCCC
Confidence            35789999999999999999999986532        699999999831           0     2467888 888653


Q ss_pred             CC--------CCCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GL--------LHQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~--------~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ..        ..+++||+|+++...+                 .++..+.++|+|||.+++.....
T Consensus        83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            21        1235799999976432                 34577889999999999986654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.34  E-value=1.8e-12  Score=101.26  Aligned_cols=103  Identities=10%  Similarity=-0.027  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ..+.+|||+|||+|..+..+++. +  .+|+++|+++.+++.|++++..... .+...+++++.+|+....   ++||+|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~-~~~~~rv~~~~~D~~~~~---~~fD~I  143 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQLLDLDI---KKYDLI  143 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHH-HHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcc-ccCCCeEEEEechHHHHH---hhCCEE
Confidence            35679999999999999999887 4  5999999999999999876532100 011357999999987544   679999


Q ss_pred             EecCCCCc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         95 YLSTYVPE-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        95 ~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++...+. +++.+.+.|+|||.+++...++
T Consensus       144 i~d~~dp~~~~~~~~~~L~pgG~lv~~~~~~  174 (262)
T 2cmg_A          144 FCLQEPDIHRIDGLKRMLKEDGVFISVAKHP  174 (262)
T ss_dssp             EESSCCCHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             EECCCChHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            99865544 5789999999999999976555

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.34  E-value=1.4e-12  Score=104.81  Aligned_cols=108  Identities=19%  Similarity=0.128  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      .++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|++++..... .+...+++++.+|+.... ...++||+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fDv  192 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC-GYEDKRVNVFIEDASKFLENVTNTYDV  192 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG-GGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcEEEEEccHHHHHhhcCCCceE
Confidence            456899999999999999999863 356999999999999999998654100 011357999999975322 12467999


Q ss_pred             EEecCCC----------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV----------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++...          ..+++.+.+.|+|||.+++...++
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  233 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL  233 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence            9987632          245688999999999999976554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.33  E-value=1e-12  Score=113.43  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~   91 (216)
                      +..+.+|||||||.|.++..+|+.   ++.|+|+|.++.+++.|+.++...+     ..++++.+++++...  ...++|
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~f  135 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENP-----DFAAEFRVGRIEEVIAALEEGEF  135 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTST-----TSEEEEEECCHHHHHHHCCTTSC
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcC-----CCceEEEECCHHHHhhhccCCCc
Confidence            456789999999999999999998   5699999999999999999987744     247999999986432  235689


Q ss_pred             cEEEecCCCCchH--------HHHHhcCCCCeEEEE
Q psy14962         92 DAIYLSTYVPEIP--------YSILLQLKPGGRLVC  119 (216)
Q Consensus        92 D~i~~~~~~~~~~--------~~~~~~L~~gG~lv~  119 (216)
                      |+|+|..+++++.        ..+.+.|+++|..++
T Consensus       136 D~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          136 DLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             SEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             cEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            9999999998854        244455777665544

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.32  E-value=1.8e-12  Score=105.91  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEcCC------CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC
Q psy14962         14 IQEGAKVLDIGSG------SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH   87 (216)
Q Consensus        14 ~~~~~~vldiG~G------~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (216)
                      ..++.+|||||||      +|..+..+++...++++|+|+|+++.|..       .       ..+++++++|+......
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-------~-------~~rI~fv~GDa~dlpf~  279 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-------D-------ELRIRTIQGDQNDAEFL  279 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-------C-------BTTEEEEECCTTCHHHH
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-------c-------CCCcEEEEecccccchh
Confidence            3567899999999      77778888776556779999999999731       1       36899999998754332


Q ss_pred             ------CCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecC
Q psy14962         88 ------QAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        88 ------~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                            .++||+|+++....     ..++++.++|||||++++....
T Consensus       280 ~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          280 DRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             hhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence                  47899999976532     1468899999999999997655

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.32  E-value=2.7e-12  Score=95.73  Aligned_cols=93  Identities=14%  Similarity=0.206  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      ++++.+|||+|||+|.++..+++.   +++|+|+|+++..           .     ..++.++.+|+.....       
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~-----~~~v~~~~~D~~~~~~~~~~~~~   83 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------E-----IAGVRFIRCDIFKETIFDDIDRA   83 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------C-----CTTCEEEECCTTSSSHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------c-----CCCeEEEEccccCHHHHHHHHHH
Confidence            578999999999999999999887   4599999998741           0     2578999999875431       


Q ss_pred             -C---CCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         87 -H---QAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        87 -~---~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                       .   .++||+|+++.+..                 .++..+.++|||||.|++.+....
T Consensus        84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~  143 (191)
T 3dou_A           84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD  143 (191)
T ss_dssp             HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred             hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence             0   13899999986531                 134567799999999999776553

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.31  E-value=1e-11  Score=96.89  Aligned_cols=102  Identities=22%  Similarity=0.166  Sum_probs=76.6

Q ss_pred             CeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---C-C--CC
Q psy14962         18 AKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---L-H--QA   89 (216)
Q Consensus        18 ~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~-~--~~   89 (216)
                      ..|||+|||+  +..+..+++...|+++|+++|.|+.|++.|++++....     ..++.++.+|+....   . .  .+
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CCcEEEEEecccChhhhhccccccc
Confidence            6899999997  44556666666678899999999999999998875421     247899999987531   0 0  23


Q ss_pred             Ccc-----EEEecCCCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFD-----AIYLSTYVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D-----~i~~~~~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .||     .|+++..+++         ++..+.+.|+|||+|+++....
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            455     5778887765         3467788999999999986654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.31  E-value=5.1e-12  Score=111.30  Aligned_cols=105  Identities=17%  Similarity=0.077  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      .+|.+|||+|||+|.+++.+++..  ..+|+++|+|+.+++.|++++..+++   ...++.++++|+.... ...++||+
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl---~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGL---TGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC---CSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             cCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CccceEEEecCHHHHHHhcCCCccE
Confidence            468999999999999999988752  24799999999999999999988764   1247999999986422 12468999


Q ss_pred             EEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++.+.-                 .++..+.++|+|||++++++...
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            99988741                 13577889999999999988764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.30  E-value=9.5e-12  Score=101.15  Aligned_cols=98  Identities=14%  Similarity=0.048  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. ++.+++++|+ +.++.  +++....+.    ..++.++.+|+.... +  +||+
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~----~~~v~~~~~d~~~~~-p--~~D~  250 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDV----AGRWKVVEGDFLREV-P--HADV  250 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGG----TTSEEEEECCTTTCC-C--CCSE
T ss_pred             ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCC----CCCeEEEecCCCCCC-C--CCcE
Confidence            4678899999999999999999885 4678999999 44443  222221111    357999999986332 2  7999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++        +++++++.|||||++++...
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999988864        46788999999999998654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.29  E-value=1.4e-11  Score=98.06  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=67.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++...+     ..++.++.+|+.
T Consensus        31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~-----~~~v~~~~~D~~  100 (299)
T 2h1r_A           31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEG-----YNNLEVYEGDAI  100 (299)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTT-----CCCEEC----CC
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcC-----CCceEEEECchh
Confidence            455666654  567899999999999999999887   3599999999999999999887644     267999999987


Q ss_pred             CCCCCCCCccEEEecCCCCch
Q psy14962         83 TGLLHQAPFDAIYLSTYVPEI  103 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~~  103 (216)
                      ....  .+||+|+++.+....
T Consensus       101 ~~~~--~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A          101 KTVF--PKFDVCTANIPYKIS  119 (299)
T ss_dssp             SSCC--CCCSEEEEECCGGGH
T ss_pred             hCCc--ccCCEEEEcCCcccc
Confidence            5433  479999998887553

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.27  E-value=2.6e-11  Score=99.18  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||||||+|..+..+++.. |+.+++++|+ +.+++.|++           ..+++++.+|+.. ..+.+  |+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~-~~p~~--D~  262 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFK-EVPSG--DT  262 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTT-CCCCC--SE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCC-CCCCC--CE
Confidence            4567899999999999999999885 5679999999 888766643           2579999999876 33333  99


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++        +++++++.|+|||++++...
T Consensus       263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~  299 (364)
T 3p9c_A          263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC  299 (364)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            999988864        46788999999999998654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.27  E-value=1.9e-11  Score=100.14  Aligned_cols=94  Identities=14%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++           ..+++++.+|+.... +.+  |+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~-p~~--D~  264 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDGV-PKG--DA  264 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTCC-CCC--SE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCCC-CCC--CE
Confidence            4567899999999999999999885 5679999999 888776643           257999999987633 333  99


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |++...+++        +++++++.|+|||++++....
T Consensus       265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            999988864        467889999999999986543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=93.56  Aligned_cols=92  Identities=18%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+. ...++.+|||+|||+|..+..++      .+++++|+++.                    ++.+..+|+....
T Consensus        58 ~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~~~d~~~~~  110 (215)
T 2zfu_A           58 IARDLR-QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVTVCDMAQVP  110 (215)
T ss_dssp             HHHHHH-TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEEESCTTSCS
T ss_pred             HHHHHh-ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEEEeccccCC
Confidence            455554 34678899999999999987662      38999999887                    2467888887655


Q ss_pred             CCCCCccEEEecCCCCc-----hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLSTYVPE-----IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~-----~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...++||+|++...+++     ++..+.++|+|||.+++.....
T Consensus       111 ~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          111 LEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             CCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             CCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            55678999999888753     5688999999999999975443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.25  E-value=1.5e-10  Score=87.02  Aligned_cols=94  Identities=19%  Similarity=0.177  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.+++++...+      .++.++.+|+...   .++||+
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~---~~~~D~  115 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFK------GKFKVFIGDVSEF---NSRVDI  115 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGT------TSEEEEESCGGGC---CCCCSE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcC------CCEEEEECchHHc---CCCCCE
Confidence            346889999999999999999887 2 2389999999999999999887644      2789999998753   247999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                      |+++.++..        +++.+.+.+  |+.+++.
T Consensus       116 v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          116 VIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             EEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             EEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            999988532        456677777  5544433

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.25  E-value=9.8e-11  Score=96.53  Aligned_cols=115  Identities=12%  Similarity=0.015  Sum_probs=85.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC-------------------------------------CcEEEE
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK-------------------------------------TGRVFG   46 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-------------------------------------~~~v~~   46 (216)
                      +.++.+..  ..++..|||.+||+|.+++.++.....                                     ..+|+|
T Consensus       191 a~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          191 AALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            34444433  467889999999999999998876431                                     136999


Q ss_pred             EeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc----------hHHHHHhcCC--CC
Q psy14962         47 VEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE----------IPYSILLQLK--PG  114 (216)
Q Consensus        47 ~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~--~g  114 (216)
                      +|+++.+++.|++++...++    ..++++..+|+..... ..+||+|+++.++..          +...+.+.|+  +|
T Consensus       269 vDid~~al~~Ar~Na~~~gl----~~~I~~~~~D~~~~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g  343 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGL----GDLITFRQLQVADFQT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT  343 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTC----TTCSEEEECCGGGCCC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             EECCHHHHHHHHHHHHHcCC----CCceEEEECChHhCCC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence            99999999999999998774    2468999999876544 358999999999732          2233334444  48


Q ss_pred             eEEEEeecCCC
Q psy14962        115 GRLVCGVGKSK  125 (216)
Q Consensus       115 G~lv~~~~~~~  125 (216)
                      |.+++.+.+..
T Consensus       344 ~~~~iit~~~~  354 (393)
T 3k0b_A          344 WSVYVLTSYEL  354 (393)
T ss_dssp             CEEEEEECCTT
T ss_pred             CEEEEEECCHH
Confidence            88888777664

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.25  E-value=2.4e-11  Score=101.97  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=87.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhC------------CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG------------KTGRVFGVEHMREQCEDAWETVMRIRPDLLN   70 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~------------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~   70 (216)
                      +..+++.+.  ..++.+|+|.|||+|.+...+++.+.            ....++|+|+++.++..|+.++..++..   
T Consensus       160 ~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~---  234 (445)
T 2okc_A          160 IQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG---  234 (445)
T ss_dssp             HHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence            345555554  35678999999999999998887641            1247999999999999999988776531   


Q ss_pred             CCCeEEEeccCCCCCCCCCCccEEEecCCCC-----------------------chHHHHHhcCCCCeEEEEeecC
Q psy14962         71 DGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-----------------------EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        71 ~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~-----------------------~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ..++++.++|...... ..+||+|+++.|+.                       .++..+.+.|+|||++.+.+++
T Consensus       235 ~~~~~i~~gD~l~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             SSCCSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cCCCCEeeCCCCCCcc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            1167889999765443 24799999998863                       2367888999999999887754

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.25  E-value=1.6e-10  Score=94.92  Aligned_cols=115  Identities=13%  Similarity=-0.008  Sum_probs=86.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC-------------------------------------CcEEEE
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK-------------------------------------TGRVFG   46 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-------------------------------------~~~v~~   46 (216)
                      +.++.+..  ..++..|+|.+||+|.+.++++.....                                     ..+++|
T Consensus       184 aall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          184 AAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            33444433  567889999999999999998876421                                     136999


Q ss_pred             EeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc----------hHHHHHhcCCC--C
Q psy14962         47 VEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE----------IPYSILLQLKP--G  114 (216)
Q Consensus        47 ~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~--g  114 (216)
                      +|+++.+++.|++++...++    ..++++..+|+..... ..+||+|+++.++..          +...+.+.||+  |
T Consensus       262 vDid~~al~~Ar~Na~~~gl----~~~I~~~~~D~~~l~~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g  336 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGL----EDVVKLKQMRLQDFKT-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT  336 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTC----TTTEEEEECCGGGCCC-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             EECCHHHHHHHHHHHHHcCC----CCceEEEECChHHCCc-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999998775    2469999999876544 348999999999742          22344455555  9


Q ss_pred             eEEEEeecCCC
Q psy14962        115 GRLVCGVGKSK  125 (216)
Q Consensus       115 G~lv~~~~~~~  125 (216)
                      +.+++.+.+..
T Consensus       337 ~~~~iit~~~~  347 (384)
T 3ldg_A          337 WSQFILTNDTD  347 (384)
T ss_dssp             SEEEEEESCTT
T ss_pred             cEEEEEECCHH
Confidence            99988877664

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.24  E-value=8.4e-11  Score=96.73  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCC-------------------------------------CcEEEEEeCCHHHHHH
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGK-------------------------------------TGRVFGVEHMREQCED   56 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~-------------------------------------~~~v~~~D~~~~~~~~   56 (216)
                      ..++.+|||.+||+|.+++.++.....                                     ...|+|+|+++.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            467889999999999999999876421                                     1479999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEecCCCCc----------hHHHHHhcCCC--CeEEEEeecCC
Q psy14962         57 AWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE----------IPYSILLQLKP--GGRLVCGVGKS  124 (216)
Q Consensus        57 a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~--gG~lv~~~~~~  124 (216)
                      |++++...++    ..++++.++|+..... ..+||+|+++.++..          +...+.+.|++  |+.+++.+.++
T Consensus       273 Ar~Na~~~gl----~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~  347 (385)
T 3ldu_A          273 ARENAEIAGV----DEYIEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE  347 (385)
T ss_dssp             HHHHHHHHTC----GGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred             HHHHHHHcCC----CCceEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence            9999988774    2479999999876543 358999999999742          22344445555  88888877766


Q ss_pred             C
Q psy14962        125 K  125 (216)
Q Consensus       125 ~  125 (216)
                      .
T Consensus       348 ~  348 (385)
T 3ldu_A          348 D  348 (385)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.24  E-value=2.7e-11  Score=94.18  Aligned_cols=88  Identities=13%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      ++..+++.+.  +.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++..       ..+++++++|+
T Consensus        17 i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~-------~~~v~~i~~D~   84 (255)
T 3tqs_A           17 VLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ-------QKNITIYQNDA   84 (255)
T ss_dssp             HHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT-------CTTEEEEESCT
T ss_pred             HHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh-------CCCcEEEEcch
Confidence            3456666664  578899999999999999999987   35999999999999999998754       26899999999


Q ss_pred             CCCCCC----CCCccEEEecCCCCc
Q psy14962         82 RTGLLH----QAPFDAIYLSTYVPE  102 (216)
Q Consensus        82 ~~~~~~----~~~~D~i~~~~~~~~  102 (216)
                      ......    +++|| |+++.++.-
T Consensus        85 ~~~~~~~~~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           85 LQFDFSSVKTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             TTCCGGGSCCSSCEE-EEEECCHHH
T ss_pred             HhCCHHHhccCCCeE-EEecCCccc
Confidence            765432    34688 778777644

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.24  E-value=1.5e-10  Score=88.26  Aligned_cols=94  Identities=14%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+..+|||+|||+|.++..+.    +...++++|+|+.+++.+++++...+      .+..+.+.|....+.+ ++||+|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~~~~~-~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLCAPPA-EAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTTSCCC-CBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeecccCCCC-CCcchH
Confidence            567899999999999988766    35699999999999999999987754      5788999998766553 489999


Q ss_pred             EecCCCCch-------HHHHHhcCCCCeEEEE
Q psy14962         95 YLSTYVPEI-------PYSILLQLKPGGRLVC  119 (216)
Q Consensus        95 ~~~~~~~~~-------~~~~~~~L~~gG~lv~  119 (216)
                      ++...++.+       ...+...|++++.+|-
T Consensus       173 Lllk~lh~LE~q~~~~~~~ll~aL~~~~vvVs  204 (253)
T 3frh_A          173 LIFKLLPLLEREQAGSAMALLQSLNTPRMAVS  204 (253)
T ss_dssp             EEESCHHHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred             HHHHHHHHhhhhchhhHHHHHHHhcCCCEEEE
Confidence            998777653       2477789999977665

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.23  E-value=2.1e-11  Score=97.26  Aligned_cols=99  Identities=16%  Similarity=0.036  Sum_probs=70.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeC----CHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEH----MREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGLLH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~   87 (216)
                      .+.++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++.+.  ..     ..+.+++.++.+ |+....  
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~-----~~~~~~v~~~~~~D~~~l~--  145 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MS-----TYGWNLVRLQSGVDVFFIP--  145 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CC-----STTGGGEEEECSCCTTTSC--
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hh-----hcCCCCeEEEeccccccCC--
Confidence            3567899999999999999999887    27999998    554332110  00     011256888888 776432  


Q ss_pred             CCCccEEEecCCCC------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         88 QAPFDAIYLSTYVP------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        88 ~~~~D~i~~~~~~~------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .++||+|+++.+..            ..+..+.++|||||.|++.+..+
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            45799999987642            13456779999999999987766

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.23  E-value=1.4e-10  Score=86.65  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+++..          +++++.+|+....   ++||+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d~~~~~---~~~D~  113 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEIS---GKYDT  113 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGCC---CCEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC----------CCEEEECcHHHCC---CCeeE
Confidence            346789999999999999999887 2 3479999999999999988742          5889999987532   67999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+++.++++        +++.+.+.+   |.+++.+
T Consensus       114 v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~  146 (200)
T 1ne2_A          114 WIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIG  146 (200)
T ss_dssp             EEECCCC-------CHHHHHHHHHHE---EEEEEEE
T ss_pred             EEECCCchhccCchhHHHHHHHHHhc---CcEEEEE
Confidence            999988644        345666666   4454444

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.23  E-value=2.9e-11  Score=99.15  Aligned_cols=92  Identities=16%  Similarity=0.123  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.|++.           .+++++.+|+... .+.  ||+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~-~~~--~D~  270 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-----------SGIEHVGGDMFAS-VPQ--GDA  270 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTTC-CCC--EEE
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-----------CCCEEEeCCcccC-CCC--CCE
Confidence            4567899999999999999999885 4678999999 8888766531           4699999998763 222  999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      |++...+++        +++++++.|+|||++++..
T Consensus       271 v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          271 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999988864        5678899999999999864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.22  E-value=2.9e-12  Score=100.33  Aligned_cols=103  Identities=17%  Similarity=-0.038  Sum_probs=71.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE--eccCCCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR--CRDGRTGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~   90 (216)
                      .+.++.+|||+|||+|.++..+++.    .+|+|+|+++ ++..+++....  . .....++.++  .+|+....  +++
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~--~-~~~~~~v~~~~~~~D~~~l~--~~~  140 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRI--T-ESYGWNIVKFKSRVDIHTLP--VER  140 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCC--C-CBTTGGGEEEECSCCTTTSC--CCC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhh--h-hccCCCeEEEecccCHhHCC--CCC
Confidence            3568899999999999999998876    3899999998 53222111000  0 0001168888  88886533  568


Q ss_pred             ccEEEecCCCC------------chHHHHHhcCCCCe--EEEEeecCCC
Q psy14962         91 FDAIYLSTYVP------------EIPYSILLQLKPGG--RLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~------------~~~~~~~~~L~~gG--~lv~~~~~~~  125 (216)
                      ||+|+++....            .++..+.++|+|||  .+++.+..+.
T Consensus       141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~  189 (265)
T 2oxt_A          141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPY  189 (265)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred             CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCC
Confidence            99999986511            14567789999999  9999776643

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.22  E-value=5.6e-11  Score=91.47  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=81.6

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+..+|||+|||+|-++..++... +...|+++|+++.+++.+++++...+      .+.++.+.|.....+ .++||
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g------~~~~~~v~D~~~~~p-~~~~D  200 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLN------VPHRTNVADLLEDRL-DEPAD  200 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTT------CCEEEEECCTTTSCC-CSCCS
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeeecccCC-CCCcc
Confidence            45567899999999999998887653 56799999999999999999998866      357899999875553 56799


Q ss_pred             EEEecCCCCchH-------HHHHhcCCCCeEEEE
Q psy14962         93 AIYLSTYVPEIP-------YSILLQLKPGGRLVC  119 (216)
Q Consensus        93 ~i~~~~~~~~~~-------~~~~~~L~~gG~lv~  119 (216)
                      ++++...++.+.       -.+...|+++|.+|-
T Consensus       201 vaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          201 VTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVT  234 (281)
T ss_dssp             EEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence            999999987643       268899999999875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.22  E-value=3.4e-11  Score=94.35  Aligned_cols=86  Identities=17%  Similarity=0.095  Sum_probs=69.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++ +|||+|||+|.++..+++.   +.+|+++|+|+.+++.+++++..        .+++++++|+.
T Consensus        36 ~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D~l  101 (271)
T 3fut_A           36 LRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQDAL  101 (271)
T ss_dssp             HHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT--------SSEEEEESCGG
T ss_pred             HHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC--------CCEEEEECChh
Confidence            456666664  5678 9999999999999999987   35899999999999999987643        57999999987


Q ss_pred             CCCCCC-CCccEEEecCCCCc
Q psy14962         83 TGLLHQ-APFDAIYLSTYVPE  102 (216)
Q Consensus        83 ~~~~~~-~~~D~i~~~~~~~~  102 (216)
                      ...... ..+|.|+++.++..
T Consensus       102 ~~~~~~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          102 LYPWEEVPQGSLLVANLPYHI  122 (271)
T ss_dssp             GSCGGGSCTTEEEEEEECSSC
T ss_pred             hCChhhccCccEEEecCcccc
Confidence            554332 36899999998765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.21  E-value=3e-12  Score=100.73  Aligned_cols=102  Identities=16%  Similarity=-0.009  Sum_probs=71.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE--eccCCCCCCCCCCc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR--CRDGRTGLLHQAPF   91 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~   91 (216)
                      +.++.+|||+|||+|.++..+++.    .+|+|+|+++ ++..+++.....   .....++.++  .+|+....  +++|
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~---~~~~~~v~~~~~~~D~~~l~--~~~f  149 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLV---ETFGWNLITFKSKVDVTKME--PFQA  149 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCC---CCTTGGGEEEECSCCGGGCC--CCCC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhh---hhcCCCeEEEeccCcHhhCC--CCCc
Confidence            567899999999999999998887    3899999998 533222110000   0001268888  88876533  5689


Q ss_pred             cEEEecCCCC------------chHHHHHhcCCCCe--EEEEeecCCC
Q psy14962         92 DAIYLSTYVP------------EIPYSILLQLKPGG--RLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~------------~~~~~~~~~L~~gG--~lv~~~~~~~  125 (216)
                      |+|+++....            .++..+.++|+|||  .+++.+..+.
T Consensus       150 D~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~  197 (276)
T 2wa2_A          150 DTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY  197 (276)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred             CEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence            9999986511            13567789999999  9998776653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.21  E-value=2.6e-11  Score=99.41  Aligned_cols=100  Identities=20%  Similarity=0.115  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh---------------CCCCCCCCCeEEEecc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI---------------RPDLLNDGRLHLRCRD   80 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~~~d   80 (216)
                      ++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++++..+               ++     .++.++++|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl-----~~i~v~~~D  120 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE-----KTIVINHDD  120 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS-----SEEEEEESC
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC-----CceEEEcCc
Confidence            688999999999999999999853 358999999999999999999887               53     358899999


Q ss_pred             CCCCCC-CCCCccEEEecCCCC--chHHHHHhcCCCCeEEEEee
Q psy14962         81 GRTGLL-HQAPFDAIYLSTYVP--EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        81 ~~~~~~-~~~~~D~i~~~~~~~--~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +..... ..+.||+|+++.+..  .+++.+.+.|++||.+++++
T Consensus       121 a~~~~~~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          121 ANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            753321 135799999887543  46788889999999988875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.18  E-value=5e-11  Score=99.09  Aligned_cols=105  Identities=24%  Similarity=0.165  Sum_probs=80.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  ..++.+|||+|||+|.++..++++.++..+++|+|+++.+++.|              .++.++++|..
T Consensus        28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~~~~~~D~~   91 (421)
T 2ih2_A           28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGILADFL   91 (421)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEESCGG
T ss_pred             HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCCcEEeCChh
Confidence            344555554  24567999999999999999998864456999999999988665              25889999987


Q ss_pred             CCCCCCCCccEEEecCCCC-----------------------------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVP-----------------------------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~-----------------------------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ... ..++||+|+++.++.                                   .++..+.++|+|||++++.++..
T Consensus        92 ~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A           92 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             hcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            543 246899999986651                                   12467789999999999987664

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.17  E-value=5.9e-11  Score=96.57  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|..+..+++.. |+.+++++|+ +.+++.|++.           .+++++.+|+.... +  .||+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~~-p--~~D~  249 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-----------NNLTYVGGDMFTSI-P--NADA  249 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-----------TTEEEEECCTTTCC-C--CCSE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-----------CCcEEEeccccCCC-C--CccE
Confidence            4567899999999999999999885 4669999999 9988776541           45999999986532 2  3999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCC---CeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKP---GGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~---gG~lv~~~~  122 (216)
                      |++...+++        +++++++.|+|   ||++++...
T Consensus       250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  289 (352)
T 1fp2_A          250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  289 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            999988764        45788999999   999988654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.17  E-value=2.7e-10  Score=85.06  Aligned_cols=101  Identities=17%  Similarity=0.103  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---------
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---------   84 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---------   84 (216)
                      +.+..+|||+||  |+.+..+++.  ++++|+++|.+++..+.|++++.+.++.  ..++++++.+|+...         
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~--~~~~I~~~~gda~~~~~wg~p~~~  101 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPA--EGTEVNIVWTDIGPTGDWGHPVSD  101 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCC--TTCEEEEEECCCSSBCGGGCBSSS
T ss_pred             hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCCceEEEEeCchhhhcccccccc
Confidence            456789999998  5888888874  2569999999999999999999886530  026899999996532         


Q ss_pred             -----C----------CCCCCccEEEecCCCC-chHHHHHhcCCCCeEEEEe
Q psy14962         85 -----L----------LHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 -----~----------~~~~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~  120 (216)
                           .          ...++||+|+++.... .....+.+.|+|||++++.
T Consensus       102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             TTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEET
T ss_pred             hhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEe
Confidence                 0          1236899999998754 3345567999999999874

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.17  E-value=4.2e-11  Score=98.40  Aligned_cols=103  Identities=18%  Similarity=0.092  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCCCCCC--CCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGRTGLL--HQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~--~~~~~   91 (216)
                      .+|.+|||++||+|..++.++...+...+|+++|+++.+++.+++++..++++    ++ +.++.+|+.....  ..+.|
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~----~~~v~v~~~Da~~~l~~~~~~~f  126 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP----EDRYEIHGMEANFFLRKEWGFGF  126 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECSCHHHHHHSCCSSCE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CceEEEEeCCHHHHHHHhhCCCC
Confidence            46889999999999999999987431258999999999999999999987741    33 8999999753221  13579


Q ss_pred             cEEEecCCC--CchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYV--PEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|+++..-  ..++..+.+.|++||.+++++
T Consensus       127 D~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          127 DYVDLDPFGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEECCCcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            999998732  247788889999999988877

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.17  E-value=3.3e-10  Score=87.62  Aligned_cols=76  Identities=14%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCC-CCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQ-APFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D   92 (216)
                      +.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++..       ..++.++.+|+....... ..| 
T Consensus        28 ~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~-------~~~v~~~~~D~~~~~~~~~~~~-   96 (244)
T 1qam_A           28 LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQFKFPKNQSY-   96 (244)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGGCCCCSSCCC-
T ss_pred             CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc-------CCCeEEEEChHHhCCcccCCCe-
Confidence            4578899999999999999999883   5999999999999999987643       257999999987654332 345 


Q ss_pred             EEEecCCC
Q psy14962         93 AIYLSTYV  100 (216)
Q Consensus        93 ~i~~~~~~  100 (216)
                      .|+++.++
T Consensus        97 ~vv~nlPy  104 (244)
T 1qam_A           97 KIFGNIPY  104 (244)
T ss_dssp             EEEEECCG
T ss_pred             EEEEeCCc
Confidence            56666654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.15  E-value=1.7e-12  Score=100.52  Aligned_cols=111  Identities=18%  Similarity=0.108  Sum_probs=83.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.++++...       ..+++++.+|+.
T Consensus        18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~-------~~~v~~~~~D~~   85 (245)
T 1yub_A           18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDIL   85 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCCT
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc-------CCceEEEECChh
Confidence            455666664  5678899999999999999999883   5999999999999888776532       257899999987


Q ss_pred             CCCCC-CCCccEEEecCCCCc-----------------hH----HHHHhcCCCCeEEEEeecCCCC
Q psy14962         83 TGLLH-QAPFDAIYLSTYVPE-----------------IP----YSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        83 ~~~~~-~~~~D~i~~~~~~~~-----------------~~----~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ..... .++| .|+++.+...                 .+    +.+.++|+|||.+++.+.....
T Consensus        86 ~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~~  150 (245)
T 1yub_A           86 QFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVS  150 (245)
T ss_dssp             TTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTTTBC
T ss_pred             hcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhheehee
Confidence            65443 3578 7777765421                 12    5688999999998887665543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.14  E-value=7.6e-10  Score=87.14  Aligned_cols=110  Identities=22%  Similarity=0.171  Sum_probs=86.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      ....+||-||.|.|..+.++++.. +..+|+.+|+++..++.+++.+.......+...+++++.+|+..... ..++||+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            456799999999999999999874 24599999999999999999875422111235789999999875543 3478999


Q ss_pred             EEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++..-+          .+.+.+++.|+|||+++....++.
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~  202 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCF  202 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESS
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcc
Confidence            99876532          356899999999999999876654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.13  E-value=1.1e-10  Score=92.29  Aligned_cols=92  Identities=17%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             cCCCCCeEEEEcCCC------chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEE-EeccCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS------GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL-RCRDGRTGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~------G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~   85 (216)
                      .++++.+|||+|||+      |.  ..+++..+++++|+|+|+++. +                 .++.+ +.+|+....
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----------------~~v~~~i~gD~~~~~  119 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----------------SDADSTLIGDCATVH  119 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----------------CSSSEEEESCGGGCC
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----------------CCCEEEEECccccCC
Confidence            467899999999954      66  445666554679999999997 1                 25778 999987543


Q ss_pred             CCCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 LHQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      . .++||+|+++...+                 .+++.+.++|||||.|++.+....
T Consensus       120 ~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~  175 (290)
T 2xyq_A          120 T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  175 (290)
T ss_dssp             C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            3 36799999975421                 356788999999999999775543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.12  E-value=1.2e-10  Score=92.58  Aligned_cols=91  Identities=23%  Similarity=0.207  Sum_probs=73.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  +.++.+|||+|||+|..+..+++..+ +.+|+++|.|+.+++.|++++...+      .++.++++|+
T Consensus        14 Ll~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g------~~v~~v~~d~   84 (301)
T 1m6y_A           14 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSY   84 (301)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCG
T ss_pred             HHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCH
Confidence            5667777775  56889999999999999999999863 5699999999999999999887643      5899999997


Q ss_pred             CCCC--CC---CCCccEEEecCCCC
Q psy14962         82 RTGL--LH---QAPFDAIYLSTYVP  101 (216)
Q Consensus        82 ~~~~--~~---~~~~D~i~~~~~~~  101 (216)
                      ....  ..   ..+||.|+++.+..
T Consensus        85 ~~l~~~l~~~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           85 READFLLKTLGIEKVDGILMDLGVS  109 (301)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCccc
Confidence            6432  11   15799999988764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.10  E-value=4.5e-10  Score=88.42  Aligned_cols=99  Identities=15%  Similarity=0.117  Sum_probs=71.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++.... +++|+++|+++.+++.++++. .        .+++++++|+
T Consensus        31 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~--------~~v~~i~~D~   99 (279)
T 3uzu_A           31 IDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G--------ELLELHAGDA   99 (279)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G--------GGEEEEESCG
T ss_pred             HHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C--------CCcEEEECCh
Confidence            455666664  568899999999999999999998542 234999999999999999884 2        5799999998


Q ss_pred             CCCCCCC----C--CccEEEecCCCCchHHHHHhcCC
Q psy14962         82 RTGLLHQ----A--PFDAIYLSTYVPEIPYSILLQLK  112 (216)
Q Consensus        82 ~~~~~~~----~--~~D~i~~~~~~~~~~~~~~~~L~  112 (216)
                      ......+    .  ..+.|+++.++.-...-+.++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~  136 (279)
T 3uzu_A          100 LTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMS  136 (279)
T ss_dssp             GGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGG
T ss_pred             hcCChhHhcccccCCceEEEEccCccccHHHHHHHHh
Confidence            7543321    1  23567777776544344445554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.09  E-value=3e-10  Score=97.31  Aligned_cols=114  Identities=18%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC-----------------CcEEEEEeCCHHHHHHHHHHHHHhCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK-----------------TGRVFGVEHMREQCEDAWETVMRIRP   66 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-----------------~~~v~~~D~~~~~~~~a~~~~~~~~~   66 (216)
                      ..+++.+.  ..++.+|+|.|||+|.+...+++.+..                 ...++|+|+++.++..|+.++..++.
T Consensus       159 ~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          159 KTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            44555554  356789999999999999888876421                 13799999999999999998876553


Q ss_pred             CCCCCCC-----eEEEeccCCCCC-CCCCCccEEEecCCCC--------------------chHHHHHhcCCCCeEEEEe
Q psy14962         67 DLLNDGR-----LHLRCRDGRTGL-LHQAPFDAIYLSTYVP--------------------EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        67 ~~~~~~~-----~~~~~~d~~~~~-~~~~~~D~i~~~~~~~--------------------~~~~~~~~~L~~gG~lv~~  120 (216)
                           ..     +.+.++|..... ....+||+|++++|+.                    .++..+.+.|+|||++.+.
T Consensus       237 -----~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V  311 (541)
T 2ar0_A          237 -----EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV  311 (541)
T ss_dssp             -----CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence                 33     778899875432 2346799999998863                    2557888999999999888


Q ss_pred             ecCC
Q psy14962        121 VGKS  124 (216)
Q Consensus       121 ~~~~  124 (216)
                      +++.
T Consensus       312 ~p~~  315 (541)
T 2ar0_A          312 VPDN  315 (541)
T ss_dssp             EEHH
T ss_pred             ecCc
Confidence            7654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.08  E-value=2.4e-10  Score=93.14  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++           ..++.++.+|+.. ..+  .||+|
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~~--~~D~v  255 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFK-SIP--SADAV  255 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTT-CCC--CCSEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCC-CCC--CceEE
Confidence            467899999999999999999885 5678999999 788766543           1459999999876 322  49999


Q ss_pred             EecCCCCc--------hHHHHHhcCCC---CeEEEEeec
Q psy14962         95 YLSTYVPE--------IPYSILLQLKP---GGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~--------~~~~~~~~L~~---gG~lv~~~~  122 (216)
                      ++...+++        +++++++.|+|   ||++++...
T Consensus       256 ~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~  294 (358)
T 1zg3_A          256 LLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI  294 (358)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence            99988764        45788899999   999988643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.06  E-value=5.6e-11  Score=87.11  Aligned_cols=82  Identities=21%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQA   89 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~   89 (216)
                      .+.+|.+|||+|||.                 +++|+++.|++.|+++..         .++.+..+|+.....   .++
T Consensus         9 g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~---------~~~~~~~~d~~~~~~~~~~~~   62 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG---------NEGRVSVENIKQLLQSAHKES   62 (176)
T ss_dssp             TCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT---------TTSEEEEEEGGGGGGGCCCSS
T ss_pred             CCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc---------cCcEEEEechhcCccccCCCC
Confidence            367899999999986                 128999999999988743         248899999875544   567


Q ss_pred             CccEEEecCCCCc-------hHHHHHhcCCCCeEEEEe
Q psy14962         90 PFDAIYLSTYVPE-------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        90 ~~D~i~~~~~~~~-------~~~~~~~~L~~gG~lv~~  120 (216)
                      +||+|++...+++       ++++++++|||||++++.
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence            8999999877665       468999999999999994

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.05  E-value=1.6e-09  Score=95.54  Aligned_cols=117  Identities=16%  Similarity=0.097  Sum_probs=86.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhC-----------------------------------------CC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG-----------------------------------------KT   41 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~-----------------------------------------~~   41 (216)
                      ++.++.+..  ..++..|+|.+||+|.+.+.++....                                         +.
T Consensus       179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            344444443  46788999999999999998887531                                         12


Q ss_pred             cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC--CCCccEEEecCCCCc----------h---HHH
Q psy14962         42 GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH--QAPFDAIYLSTYVPE----------I---PYS  106 (216)
Q Consensus        42 ~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~~~~----------~---~~~  106 (216)
                      ..++|+|+++.+++.|+.++...|+    ...+.+..+|+.....+  .++||+|++++|+..          +   +..
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv----~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~  332 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGI----GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR  332 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCC----CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence            4799999999999999999998775    24589999998754322  237999999999743          1   133


Q ss_pred             HHhcCCCCeEEEEeecCCC
Q psy14962        107 ILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus       107 ~~~~L~~gG~lv~~~~~~~  125 (216)
                      +.+.+.|||.+++.+.++.
T Consensus       333 ~lk~~~~g~~~~ilt~~~~  351 (703)
T 3v97_A          333 IMKNQFGGWNLSLFSASPD  351 (703)
T ss_dssp             HHHHHCTTCEEEEEESCHH
T ss_pred             HHHhhCCCCeEEEEeCCHH
Confidence            4455678999999887663

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.03  E-value=1.1e-09  Score=90.22  Aligned_cols=79  Identities=20%  Similarity=0.198  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--CCCCCCCCCeEEEeccCCCCCCC--CC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI--RPDLLNDGRLHLRCRDGRTGLLH--QA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~--~~   89 (216)
                      +.+|.+|||+|||+|..+..+++.   +.+|+++|.|+.+++.|++++...  +     ..++.++++|+......  .+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~g-----l~~i~~i~~Da~~~L~~~~~~  162 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNE-----GKDVNILTGDFKEYLPLIKTF  162 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCT-----TCEEEEEESCGGGSHHHHHHH
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccC-----CCcEEEEECcHHHhhhhccCC
Confidence            345899999999999999998877   459999999999999999999876  5     26899999998754221  25


Q ss_pred             CccEEEecCCC
Q psy14962         90 PFDAIYLSTYV  100 (216)
Q Consensus        90 ~~D~i~~~~~~  100 (216)
                      +||+|+++.+.
T Consensus       163 ~fDvV~lDPPr  173 (410)
T 3ll7_A          163 HPDYIYVDPAR  173 (410)
T ss_dssp             CCSEEEECCEE
T ss_pred             CceEEEECCCC
Confidence            79999998775

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.00  E-value=1.3e-09  Score=88.58  Aligned_cols=112  Identities=17%  Similarity=0.224  Sum_probs=86.3

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCCCeEEEeccCCCCC-CCCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL-NDGRLHLRCRDGRTGL-LHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~~-~~~~~   90 (216)
                      ..++|.+|||+|||+|.-+..++... ..+.++++|+++..+...++++.+.+.... ...++.+...|..... ...+.
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~  223 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDT  223 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTC
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhcccc
Confidence            46899999999999999999998864 346899999999999999999988664311 2357888888875432 23467


Q ss_pred             ccEEEecCCCCc------------------------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVPE------------------------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~~------------------------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||.|+++.+-..                              ++....+.|||||++|.++++..
T Consensus       224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~  288 (359)
T 4fzv_A          224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS  288 (359)
T ss_dssp             EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence            999998776311                              23566689999999999988764

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.00  E-value=9.9e-10  Score=85.11  Aligned_cols=95  Identities=21%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++  .       ..+++++++|+.
T Consensus        20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~--~-------~~~v~~i~~D~~   86 (249)
T 3ftd_A           20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI--G-------DERLEVINEDAS   86 (249)
T ss_dssp             HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS--C-------CTTEEEECSCTT
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc--c-------CCCeEEEEcchh
Confidence            445666654  467899999999999999999987 2 35999999999999999876  2       267999999987


Q ss_pred             CCCCCC--CCccEEEecCCCCchHHHHHhcC
Q psy14962         83 TGLLHQ--APFDAIYLSTYVPEIPYSILLQL  111 (216)
Q Consensus        83 ~~~~~~--~~~D~i~~~~~~~~~~~~~~~~L  111 (216)
                      .....+  +.+ .|+++.+..-....+.++|
T Consensus        87 ~~~~~~~~~~~-~vv~NlPy~i~~~il~~ll  116 (249)
T 3ftd_A           87 KFPFCSLGKEL-KVVGNLPYNVASLIIENTV  116 (249)
T ss_dssp             TCCGGGSCSSE-EEEEECCTTTHHHHHHHHH
T ss_pred             hCChhHccCCc-EEEEECchhccHHHHHHHH
Confidence            654322  233 7777877755333333333

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.96  E-value=1.1e-08  Score=87.52  Aligned_cols=119  Identities=14%  Similarity=0.066  Sum_probs=88.5

Q ss_pred             HHHHHHHhccc--CCCCCeEEEEcCCCchHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe
Q psy14962          3 QARIIELLEPK--IQEGAKVLDIGSGSGFMSCVFAELVG--KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC   78 (216)
Q Consensus         3 ~~~~~~~l~~~--~~~~~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (216)
                      +..|++.+...  ..++.+|+|.+||+|.+...+++.+.  ....++|+|+++.++..|+.++.-++.   ...++.+.+
T Consensus       206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi---~~~~~~I~~  282 (542)
T 3lkd_A          206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV---PIENQFLHN  282 (542)
T ss_dssp             HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEE
T ss_pred             HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC---CcCccceEe
Confidence            34455555422  23678999999999999988888752  235899999999999999998877653   114678999


Q ss_pred             ccCCCC--C-CCCCCccEEEecCCCCc-----------------------------hHHHHHhcCC-CCeEEEEeecCC
Q psy14962         79 RDGRTG--L-LHQAPFDAIYLSTYVPE-----------------------------IPYSILLQLK-PGGRLVCGVGKS  124 (216)
Q Consensus        79 ~d~~~~--~-~~~~~~D~i~~~~~~~~-----------------------------~~~~~~~~L~-~gG~lv~~~~~~  124 (216)
                      +|....  + ....+||+|++++|+..                             ++..+.+.|+ +||++.+.+++.
T Consensus       283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            997644  2 23568999999988510                             3467789999 999998887765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.96  E-value=2.6e-10  Score=88.84  Aligned_cols=82  Identities=22%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCH-------HHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMR-------EQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (216)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++       .+++.|+++...++.    ..++.++++|......
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri~~~~~d~~~~l~  153 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARINLHFGNAAEQMP  153 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTEEEEESCHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCeEEEECCHHHHHH
Confidence            456789999999999999999986   35999999999       999999887665442    1359999999764321


Q ss_pred             --CC--CCccEEEecCCCCc
Q psy14962         87 --HQ--APFDAIYLSTYVPE  102 (216)
Q Consensus        87 --~~--~~~D~i~~~~~~~~  102 (216)
                        .+  ++||+|+++.+++.
T Consensus       154 ~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          154 ALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHCCCSEEEECCCC--
T ss_pred             hhhccCCCccEEEECCCCCC
Confidence              22  57999999887643

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.94  E-value=2.7e-09  Score=91.31  Aligned_cols=115  Identities=20%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC--------------CcEEEEEeCCHHHHHHHHHHHHHhCCCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK--------------TGRVFGVEHMREQCEDAWETVMRIRPDL   68 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~--------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~   68 (216)
                      +..|++.+.+  .++ +|+|.+||+|.+...+++.+..              ...++|+|+++.++..|+.++..++.. 
T Consensus       234 v~lmv~ll~p--~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-  309 (544)
T 3khk_A          234 VTLIVEMLEP--YKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-  309 (544)
T ss_dssp             HHHHHHHHCC--CSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHhc--CCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-
Confidence            4455565542  334 9999999999998887654310              248999999999999999988776641 


Q ss_pred             CCCCCeEEEeccCCCCC-CCCCCccEEEecCCCCc-----------------------------------hHHHHHhcCC
Q psy14962         69 LNDGRLHLRCRDGRTGL-LHQAPFDAIYLSTYVPE-----------------------------------IPYSILLQLK  112 (216)
Q Consensus        69 ~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~~-----------------------------------~~~~~~~~L~  112 (216)
                         .++.+.++|..... ....+||+|++++|+..                                   ++..+.+.|+
T Consensus       310 ---~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk  386 (544)
T 3khk_A          310 ---FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA  386 (544)
T ss_dssp             ---CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred             ---cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence               23444777765332 23468999999988642                                   3467889999


Q ss_pred             CCeEEEEeecCC
Q psy14962        113 PGGRLVCGVGKS  124 (216)
Q Consensus       113 ~gG~lv~~~~~~  124 (216)
                      |||++.+.+++.
T Consensus       387 ~gGr~aiVlP~g  398 (544)
T 3khk_A          387 PTGSMALLLANG  398 (544)
T ss_dssp             EEEEEEEEEETH
T ss_pred             cCceEEEEecch
Confidence            999998887664

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.92  E-value=1.1e-09  Score=85.02  Aligned_cols=89  Identities=12%  Similarity=0.071  Sum_probs=64.7

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      ++..+++.+.  +.++.+|||+|||+|.++. ++ . +...+|+++|+++.+++.+++++..       ..++.++++|+
T Consensus         9 i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~-------~~~v~~i~~D~   76 (252)
T 1qyr_A            9 VIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDA   76 (252)
T ss_dssp             HHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCG
T ss_pred             HHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhcc-------CCceEEEECch
Confidence            3566777764  5788999999999999999 64 3 2212399999999999999876543       14799999998


Q ss_pred             CCCCCCC-----CCccEEEecCCCCc
Q psy14962         82 RTGLLHQ-----APFDAIYLSTYVPE  102 (216)
Q Consensus        82 ~~~~~~~-----~~~D~i~~~~~~~~  102 (216)
                      ......+     +..+.|+++.+..-
T Consensus        77 ~~~~~~~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           77 MTFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GGCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             hhCCHHHhhcccCCceEEEECCCCCc
Confidence            7543211     23468888887643

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.83  E-value=1.5e-08  Score=89.07  Aligned_cols=110  Identities=9%  Similarity=-0.024  Sum_probs=75.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhC--CCcEEEEEeCCHHHHHHHH--HHHHHhCCCCCCCCCeEEEeccCCCC-CCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVG--KTGRVFGVEHMREQCEDAW--ETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQ   88 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~   88 (216)
                      ..++.+|+|.|||+|.+...+++..+  ....++|+|+++.++..|+  .++..+.+. .+.....+...|.... ....
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll-hGi~~~~I~~dD~L~~~~~~~  397 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLV-SSNNAPTITGEDVCSLNPEDF  397 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC-BTTBCCEEECCCGGGCCGGGG
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh-cCCCcceEEecchhccccccc
Confidence            45688999999999999999988753  1247999999999999984  333221110 0112234555554432 1234


Q ss_pred             CCccEEEecCCCCc-----------------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         89 APFDAIYLSTYVPE-----------------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        89 ~~~D~i~~~~~~~~-----------------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+||+|++++|+..                                   ++..+.+.|++||++.+.+++.
T Consensus       398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            67999999999721                                   2355678999999999988765

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.76  E-value=2.6e-08  Score=86.16  Aligned_cols=96  Identities=15%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         17 GAKVLDIGSGSGFMSCVF---AELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l---~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +..|+|+|||+|.+....   ++..+...+|+++|.++ +...+++....+++    .++|+++.+|++.... .+++|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~----~dkVtVI~gd~eev~L-PEKVDI  431 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW----GSQVTVVSSDMREWVA-PEKADI  431 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT----GGGEEEEESCTTTCCC-SSCEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC----CCeEEEEeCcceeccC-CcccCE
Confidence            346999999999985444   44432223789999997 56677787777765    4789999999986544 357999


Q ss_pred             EEecCCC-----Cc---hHHHHHhcCCCCeEEE
Q psy14962         94 IYLSTYV-----PE---IPYSILLQLKPGGRLV  118 (216)
Q Consensus        94 i~~~~~~-----~~---~~~~~~~~L~~gG~lv  118 (216)
                      |++-..-     +.   .+....+.|||||.++
T Consensus       432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            9974331     22   3345568999999863

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.75  E-value=2.7e-08  Score=77.28  Aligned_cols=86  Identities=22%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             CCCC--CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCC-CCCC---CCCeEEEeccCCCCCC-
Q psy14962         14 IQEG--AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP-DLLN---DGRLHLRCRDGRTGLL-   86 (216)
Q Consensus        14 ~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~---~~~~~~~~~d~~~~~~-   86 (216)
                      +.++  .+|||+|||+|..+..++..   +++|+++|.++.+...+++++..... ....   ..+++++++|...... 
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            4567  89999999999999999988   34899999999987777666543210 0000   1468999999764221 


Q ss_pred             CCCCccEEEecCCCCc
Q psy14962         87 HQAPFDAIYLSTYVPE  102 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~  102 (216)
                      ..++||+|+++.+++.
T Consensus       161 ~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          161 ITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             CSSCCSEEEECCCCCC
T ss_pred             CcccCCEEEEcCCCCC
Confidence            1236999999988764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.67  E-value=5.1e-08  Score=68.22  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=73.9

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCc-hHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSG-FMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD   80 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G-~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (216)
                      |...+.+.+.....++.+|||+|||+| ..+..+++..  +..|+++|+++..+.                    ++..|
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~--------------------~v~dD   78 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG--------------------IVRDD   78 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT--------------------EECCC
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc--------------------eEEcc
Confidence            455666676666667789999999999 5889888753  568999999886432                    67778


Q ss_pred             CCCCCCCC-CCccEEEecCCCCchHHHHHhcCCC-CeEEEEeecCCC
Q psy14962         81 GRTGLLHQ-APFDAIYLSTYVPEIPYSILLQLKP-GGRLVCGVGKSK  125 (216)
Q Consensus        81 ~~~~~~~~-~~~D~i~~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~~  125 (216)
                      +....... ..||+|++..+-+.+...+.++-+. |.-+++.....+
T Consensus        79 iF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E  125 (153)
T 2k4m_A           79 ITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGE  125 (153)
T ss_dssp             SSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTB
T ss_pred             CCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            76543321 4799999988888776666655554 777877665554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.64  E-value=5.8e-08  Score=78.80  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC---CCCCCCCCeEEEeccCCCCC----CC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR---PDLLNDGRLHLRCRDGRTGL----LH   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~d~~~~~----~~   87 (216)
                      .+..+||-+|.|.|....++++. . ..+|+.+|+++..++.+++.+....   .+....++++++.+|+....    ..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35689999999999999999987 2 3699999999999999998753211   11111246889999976332    12


Q ss_pred             CCCccEEEecCCC----------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         88 QAPFDAIYLSTYV----------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        88 ~~~~D~i~~~~~~----------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .++||+|+.+..-                ..+.+.+++.|+|||+++.....+
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~  334 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV  334 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            4679999987432                113477889999999999875544

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.62  E-value=9e-08  Score=74.10  Aligned_cols=105  Identities=15%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .++++.+|||+|||+|.++..+++..+ ...+.++|+...+....... .     .. ..++.....++.......++||
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~-----~~-g~~ii~~~~~~dv~~l~~~~~D  142 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-Q-----SL-GWNIITFKDKTDIHRLEPVKCD  142 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-C-----BT-TGGGEEEECSCCTTTSCCCCCS
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-C-----cC-CCCeEEEeccceehhcCCCCcc
Confidence            367888999999999999998887632 24778888764321000000 0     00 0144455555443334467899


Q ss_pred             EEEecCCCC----c--------hHHHHHhcCCCC-eEEEEeecCCC
Q psy14962         93 AIYLSTYVP----E--------IPYSILLQLKPG-GRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~----~--------~~~~~~~~L~~g-G~lv~~~~~~~  125 (216)
                      +|+++....    +        +++.+.++|+|| |.|++-+..|+
T Consensus       143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py  188 (277)
T 3evf_A          143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY  188 (277)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT
T ss_pred             EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC
Confidence            999987554    1        235557899999 99999998853

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.58  E-value=5.1e-08  Score=84.57  Aligned_cols=97  Identities=15%  Similarity=0.010  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHH---hC---------CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAEL---VG---------KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~---~~---------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      +..|+|+|||+|.+....++.   .+         ...+|+++|.++......+.... ++.    .++|+++.+|++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~----~d~VtVI~gd~eev  484 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW----KRRVTIIESDMRSL  484 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT----TTCSEEEESCGGGH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC----CCeEEEEeCchhhc
Confidence            457999999999997543222   11         12499999999977655555443 443    36799999999754


Q ss_pred             CCC-----CCCccEEEecCCC--------CchHHHHHhcCCCCeEEE
Q psy14962         85 LLH-----QAPFDAIYLSTYV--------PEIPYSILLQLKPGGRLV  118 (216)
Q Consensus        85 ~~~-----~~~~D~i~~~~~~--------~~~~~~~~~~L~~gG~lv  118 (216)
                      ..+     .+++|+|++-..-        +.++..+.+.|||||.++
T Consensus       485 ~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          485 PGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            331     4679999985441        234555668999999754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.58  E-value=1.6e-07  Score=73.09  Aligned_cols=87  Identities=21%  Similarity=0.158  Sum_probs=70.0

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |...+++.+.  ++++..++|.+||.|..+..+++.   +++|+|+|.++.+++.|++ +..        .++.++++++
T Consensus        10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~f   75 (285)
T 1wg8_A           10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGNF   75 (285)
T ss_dssp             THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESCG
T ss_pred             HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECCc
Confidence            5677888886  578999999999999999999987   4599999999999999987 532        5799999997


Q ss_pred             CCCC--C---CCCCccEEEecCCCCc
Q psy14962         82 RTGL--L---HQAPFDAIYLSTYVPE  102 (216)
Q Consensus        82 ~~~~--~---~~~~~D~i~~~~~~~~  102 (216)
                      ....  .   ..+++|.|+.+.+...
T Consensus        76 ~~l~~~L~~~g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           76 RHLKRHLAALGVERVDGILADLGVSS  101 (285)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             chHHHHHHHcCCCCcCEEEeCCcccc
Confidence            6321  1   1257999999888654

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.57  E-value=7.6e-07  Score=76.07  Aligned_cols=116  Identities=19%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC------------CcEEEEEeCCHHHHHHHHHHHHHhCCCCC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK------------TGRVFGVEHMREQCEDAWETVMRIRPDLL   69 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~   69 (216)
                      ++..|++++.  ..++.+|+|-+||+|.+...+.+++..            ...++|+|+++.+...|+-++.-++.   
T Consensus       205 Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~---  279 (530)
T 3ufb_A          205 VVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL---  279 (530)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC---
Confidence            3456666665  367889999999999998887665421            13699999999999999888777663   


Q ss_pred             CCCCeEEEeccCCCCCC----CCCCccEEEecCCCCc----------------------hHHHHHhcCC-------CCeE
Q psy14962         70 NDGRLHLRCRDGRTGLL----HQAPFDAIYLSTYVPE----------------------IPYSILLQLK-------PGGR  116 (216)
Q Consensus        70 ~~~~~~~~~~d~~~~~~----~~~~~D~i~~~~~~~~----------------------~~~~~~~~L~-------~gG~  116 (216)
                        ...++..+|......    ...+||+|++++|+..                      ++..+.+.||       +||+
T Consensus       280 --~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr  357 (530)
T 3ufb_A          280 --EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR  357 (530)
T ss_dssp             --SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred             --ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence              455677888653321    2357999999999731                      2345566665       7999


Q ss_pred             EEEeecCC
Q psy14962        117 LVCGVGKS  124 (216)
Q Consensus       117 lv~~~~~~  124 (216)
                      +.+.+++.
T Consensus       358 ~avVlP~g  365 (530)
T 3ufb_A          358 AAVVVPNG  365 (530)
T ss_dssp             EEEEEEHH
T ss_pred             EEEEecch
Confidence            98887764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.57  E-value=8.5e-08  Score=74.47  Aligned_cols=105  Identities=15%  Similarity=0.097  Sum_probs=70.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHh------CCC-----cEEEEEeCCH---HHHH-----------HHHHHHHHhCCC--
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELV------GKT-----GRVFGVEHMR---EQCE-----------DAWETVMRIRPD--   67 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~------~~~-----~~v~~~D~~~---~~~~-----------~a~~~~~~~~~~--   67 (216)
                      .++.+|||+|+|+|+.+..+++..      +|.     .+++++|..|   +.+.           .|++.+..+...  
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            355789999999999988877654      453     4899999876   4443           455554431100  


Q ss_pred             -------CCCCCCeEEEeccCCCCCCC--C---CCccEEEecCCC---------CchHHHHHhcCCCCeEEEE
Q psy14962         68 -------LLNDGRLHLRCRDGRTGLLH--Q---APFDAIYLSTYV---------PEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        68 -------~~~~~~~~~~~~d~~~~~~~--~---~~~D~i~~~~~~---------~~~~~~~~~~L~~gG~lv~  119 (216)
                             .-+..+++++.+|+......  .   +.||+|+.+.-.         ..++..+.++|+|||+++.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                   00124577888997643221  1   379999997532         2267899999999999986

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.54  E-value=3e-07  Score=72.16  Aligned_cols=103  Identities=9%  Similarity=0.082  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC----CCcEEEEEeCCHH--------------------------HHHHHHHHHHHhC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG----KTGRVFGVEHMRE--------------------------QCEDAWETVMRIR   65 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~----~~~~v~~~D~~~~--------------------------~~~~a~~~~~~~~   65 (216)
                      ....|||+|+..|+.++.++..+.    ++.+++++|..+.                          .++.+++++.+.+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            456999999999999988877653    3568999996421                          4667888888866


Q ss_pred             CCCCCCCCeEEEeccCCCCCC--CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEee
Q psy14962         66 PDLLNDGRLHLRCRDGRTGLL--HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        66 ~~~~~~~~~~~~~~d~~~~~~--~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~  121 (216)
                      +   ..++++++.+|+.+...  ..++||+|+.+.....    .++.+...|+|||++++..
T Consensus       186 l---~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          186 L---LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             C---CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             C---CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcC
Confidence            3   13789999999864332  2468999999987632    4678889999999999954

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.45  E-value=1.1e-06  Score=71.02  Aligned_cols=85  Identities=13%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.+|.+|||+||++|.++..++++   ++.|+++|..+ +-.    .+..       ..++.++.+|+....+..+++|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~----~l~~-------~~~V~~~~~d~~~~~~~~~~~D~  273 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQ----SLMD-------TGQVTWLREDGFKFRPTRSNISW  273 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCH----HHHT-------TTCEEEECSCTTTCCCCSSCEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cCh----hhcc-------CCCeEEEeCccccccCCCCCcCE
Confidence            578999999999999999999887   46999999764 211    1122       26799999998866665678999


Q ss_pred             EEecCCCCc--hHHHHHhcCCC
Q psy14962         94 IYLSTYVPE--IPYSILLQLKP  113 (216)
Q Consensus        94 i~~~~~~~~--~~~~~~~~L~~  113 (216)
                      |+|+.....  ....+.+.|..
T Consensus       274 vvsDm~~~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          274 MVCDMVEKPAKVAALMAQWLVN  295 (375)
T ss_dssp             EEECCSSCHHHHHHHHHHHHHT
T ss_pred             EEEcCCCChHHhHHHHHHHHhc
Confidence            999988753  33344443333

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.37  E-value=7.2e-08  Score=74.76  Aligned_cols=104  Identities=16%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+|||+|.++..+++..+ ...|+|+|+...+...+...      ... ..++.....+.........++|
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~------~~~-g~~ii~~~~~~dv~~l~~~~~D  158 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR------TTL-GWNLIRFKDKTDVFNMEVIPGD  158 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC------CBT-TGGGEEEECSCCGGGSCCCCCS
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc------ccC-CCceEEeeCCcchhhcCCCCcC
Confidence            367888999999999999998886543 34789999876532111100      000 1233333333222223457899


Q ss_pred             EEEecCCCCc------------hHHHHHhcCCCC--eEEEEeecCC
Q psy14962         93 AIYLSTYVPE------------IPYSILLQLKPG--GRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~~~------------~~~~~~~~L~~g--G~lv~~~~~~  124 (216)
                      +|+|+.....            ++.-+.++|+||  |.|++-+..+
T Consensus       159 vVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          159 TLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred             EEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence            9999877541            234456899999  9999998885

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.33  E-value=8.9e-07  Score=70.56  Aligned_cols=88  Identities=19%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  +++|..++|..||.|..+..+++.+++.++|+|+|.++.+++.++ ++        ...++.++++++
T Consensus        45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--------~~~Rv~lv~~nF  113 (347)
T 3tka_A           45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--------DDPRFSIIHGPF  113 (347)
T ss_dssp             TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--------CCTTEEEEESCG
T ss_pred             cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--------cCCcEEEEeCCH
Confidence            4567777776  678999999999999999999999877889999999999999884 33        136899999887


Q ss_pred             CCCC---CC---CCCccEEEecCCC
Q psy14962         82 RTGL---LH---QAPFDAIYLSTYV  100 (216)
Q Consensus        82 ~~~~---~~---~~~~D~i~~~~~~  100 (216)
                      ....   ..   .+++|.|+.+.+.
T Consensus       114 ~~l~~~L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          114 SALGEYVAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             GGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred             HHHHHHHHhcCCCCcccEEEECCcc
Confidence            5321   11   1369999987774

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.28  E-value=8.8e-06  Score=66.47  Aligned_cols=102  Identities=13%  Similarity=-0.034  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHH-------------h---CCCcEEEEEeCC-----------HHHHHHHHHHHHHhCCCCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAEL-------------V---GKTGRVFGVEHM-----------REQCEDAWETVMRIRPDLL   69 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~-------------~---~~~~~v~~~D~~-----------~~~~~~a~~~~~~~~~~~~   69 (216)
                      .-+|+|+||++|..+..+...             .   .|..+|+..|+.           +.+.+..++   ..+.   
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~---  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGR---  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCC---
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccC---
Confidence            467999999999988877654             1   144578888987           444333222   1110   


Q ss_pred             CCCCeEEEeccCC---CCCCCCCCccEEEecCCCCchH------------------------------------------
Q psy14962         70 NDGRLHLRCRDGR---TGLLHQAPFDAIYLSTYVPEIP------------------------------------------  104 (216)
Q Consensus        70 ~~~~~~~~~~d~~---~~~~~~~~~D~i~~~~~~~~~~------------------------------------------  104 (216)
                       ..+..|+.+...   ....+.+++|+|+++..++|+.                                          
T Consensus       127 -~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~  205 (384)
T 2efj_A          127 -KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFT  205 (384)
T ss_dssp             -CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHH
T ss_pred             -CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHH
Confidence             012356665543   3445678999999999987731                                          


Q ss_pred             ---HHHHhcCCCCeEEEEeecCCC
Q psy14962        105 ---YSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus       105 ---~~~~~~L~~gG~lv~~~~~~~  125 (216)
                         +...+.|+|||++++......
T Consensus       206 ~FL~~Ra~eL~pGG~mvl~~~gr~  229 (384)
T 2efj_A          206 TFLRIHSEELISRGRMLLTFICKE  229 (384)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHhccCCeEEEEEecCC
Confidence               122699999999999887664

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.25  E-value=1.3e-06  Score=68.18  Aligned_cols=105  Identities=15%  Similarity=0.028  Sum_probs=65.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||+||++|.++..+++..+ ...|+|+|+...+...... ...     . ..++.....+........+++|
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~-----~-~~~iv~~~~~~di~~l~~~~~D  149 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQT-----L-GWNIVKFKDKSNVFTMPTEPSD  149 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCB-----T-TGGGEEEECSCCTTTSCCCCCS
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccc-----c-CCceEEeecCceeeecCCCCcC
Confidence            357899999999999999999997642 3478999986532100000 000     0 0122222222222223356899


Q ss_pred             EEEecCCCC------------chHHHHHhcCCCC-eEEEEeecCCC
Q psy14962         93 AIYLSTYVP------------EIPYSILLQLKPG-GRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~------------~~~~~~~~~L~~g-G~lv~~~~~~~  125 (216)
                      +|+++....            .++.-+.++|+|| |.|++-+..++
T Consensus       150 lVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y  195 (300)
T 3eld_A          150 TLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY  195 (300)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT
T ss_pred             EEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc
Confidence            999986654            1334556899999 99999988843

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.20  E-value=4e-06  Score=66.40  Aligned_cols=56  Identities=27%  Similarity=0.285  Sum_probs=46.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI   64 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~   64 (216)
                      +..++....   .+|+.|||++||+|..+..+++.   +.+++|+|+++.+++.|++++...
T Consensus       225 ~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          225 AERLVRMFS---FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            444555443   68999999999999999988876   459999999999999999998764

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.18  E-value=1.6e-06  Score=66.23  Aligned_cols=95  Identities=17%  Similarity=0.041  Sum_probs=61.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCC---CcEEEEEeC--CHHHHHHHHHHHHHhCCCCCCCCCe---EEEec-cCCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGK---TGRVFGVEH--MREQCEDAWETVMRIRPDLLNDGRL---HLRCR-DGRT   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~--~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~-d~~~   83 (216)
                      .++||.+|+|+||++|.++..+++..+.   .+.++++|.  .|-.              +. ...+   .+..+ |+..
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~--------------~~-~~Gv~~i~~~~G~Df~~  134 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPML--------------MQ-SYGWNIVTMKSGVDVFY  134 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCC--------------CC-STTGGGEEEECSCCGGG
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCc--------------cc-CCCceEEEeeccCCccC
Confidence            4789999999999999999999887221   124455552  1100              00 0123   34435 8764


Q ss_pred             CCCCCCCccEEEecCCCCc------------hHHHHHhcCCCCe-EEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------------IPYSILLQLKPGG-RLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------------~~~~~~~~L~~gG-~lv~~~~~~  124 (216)
                      .  ...++|+|+|+..-..            .++-+.++|+||| .|++-+..+
T Consensus       135 ~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          135 K--PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             S--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             C--CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            2  2457999999876421            2344558999999 999988775

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.15  E-value=1.5e-05  Score=64.95  Aligned_cols=108  Identities=10%  Similarity=0.018  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHH--------Hh------CCCcEEEEEeCCHHHHHHHHHHHHHhCC-------CCCCCCCeE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAE--------LV------GKTGRVFGVEHMREQCEDAWETVMRIRP-------DLLNDGRLH   75 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~--------~~------~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~~~   75 (216)
                      .-+|+|+|||+|..+..+..        ..      .|..+|+..|+....-...-+.+....-       ......+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            46799999999998877632        21      1456888889877654333222221100       000001122


Q ss_pred             EEec---cCCCCCCCCCCccEEEecCCCCch--------------------------------------------HHHHH
Q psy14962         76 LRCR---DGRTGLLHQAPFDAIYLSTYVPEI--------------------------------------------PYSIL  108 (216)
Q Consensus        76 ~~~~---d~~~~~~~~~~~D~i~~~~~~~~~--------------------------------------------~~~~~  108 (216)
                      |+.+   .+.....+.+++|+|+++..++|+                                            ++...
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333   233344567899999999998873                                            23457


Q ss_pred             hcCCCCeEEEEeecCC
Q psy14962        109 LQLKPGGRLVCGVGKS  124 (216)
Q Consensus       109 ~~L~~gG~lv~~~~~~  124 (216)
                      +.|+|||+++++....
T Consensus       213 ~eL~pGG~mvl~~~gr  228 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGR  228 (374)
T ss_dssp             HHEEEEEEEEEEEEEC
T ss_pred             HHhCCCCEEEEEEecC
Confidence            9999999999987644

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.07  E-value=2e-05  Score=59.45  Aligned_cols=104  Identities=16%  Similarity=0.053  Sum_probs=71.8

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~   91 (216)
                      .+.++.+|+|+||++|.++..++...+. ..|+++|+...-.+.      -..+..++...++|..+ |+....  ..++
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~ghe~------P~~~~s~gwn~v~fk~gvDv~~~~--~~~~  145 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGHEE------PVPMSTYGWNIVKLMSGKDVFYLP--PEKC  145 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCC------CCCCCCTTTTSEEEECSCCGGGCC--CCCC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCccC------cchhhhcCcCceEEEeccceeecC--Cccc
Confidence            3678999999999999999988877543 389999986642210      00011234567899988 864332  2569


Q ss_pred             cEEEecCCCCc------------hHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         92 DAIYLSTYVPE------------IPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        92 D~i~~~~~~~~------------~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      |.|+|+..-..            .++.+.+.|++ |.+++-+..++.
T Consensus       146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence            99999876421            23445688998 788888887764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.94  E-value=1e-05  Score=65.51  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHH---------------hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-
Q psy14962         18 AKVLDIGSGSGFMSCVFAEL---------------VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-   81 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~---------------~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-   81 (216)
                      -+|+|+||++|..+..+...               -.|..+|+..|+.......+-+.+....    ...+..|+.+.. 
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~~~~~~f~~gvpg  128 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----DVDGVCFINGVPG  128 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----SCTTCEEEEEEES
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----ccCCCEEEEecch
Confidence            56899999999766544322               1245688999998887666555443210    001334555443 


Q ss_pred             --CCCCCCCCCccEEEecCCCCch---------------------------------------HHHHHhcCCCCeEEEEe
Q psy14962         82 --RTGLLHQAPFDAIYLSTYVPEI---------------------------------------PYSILLQLKPGGRLVCG  120 (216)
Q Consensus        82 --~~~~~~~~~~D~i~~~~~~~~~---------------------------------------~~~~~~~L~~gG~lv~~  120 (216)
                        ...+.+.+++|+|+++..++|+                                       ++...+.|+|||++++.
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence              3355567899999999998763                                       33447999999999998


Q ss_pred             ecCCC
Q psy14962        121 VGKSK  125 (216)
Q Consensus       121 ~~~~~  125 (216)
                      .....
T Consensus       209 ~~gr~  213 (359)
T 1m6e_X          209 ILGRR  213 (359)
T ss_dssp             EEECS
T ss_pred             EecCC
Confidence            76554

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.94  E-value=4.9e-05  Score=59.23  Aligned_cols=104  Identities=14%  Similarity=0.016  Sum_probs=68.6

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~   91 (216)
                      .+.++.+|||+||++|.++..++...+. ..|+|+|+...--+.      -..+.+++..-+.+... |+.....  .++
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~------P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~  161 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEE------PQLVQSYGWNIVTMKSGVDVFYRPS--ECC  161 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCC------CCCCCBTTGGGEEEECSCCTTSSCC--CCC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccC------cchhhhcCCcceEEEeccCHhhCCC--CCC
Confidence            4678899999999999999988877543 379999986651100      00000122234677766 6543322  569


Q ss_pred             cEEEecCCCCc------------hHHHHHhcCCCC-eEEEEeecCCC
Q psy14962         92 DAIYLSTYVPE------------IPYSILLQLKPG-GRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~~------------~~~~~~~~L~~g-G~lv~~~~~~~  125 (216)
                      |+|+|+.+-..            .++.+.+.|++| |-|++-+..|+
T Consensus       162 D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY  208 (321)
T 3lkz_A          162 DTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY  208 (321)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred             CEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence            99999877211            234445788998 89999888884

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.91  E-value=5.4e-05  Score=61.20  Aligned_cols=72  Identities=21%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             hHHHHHHHhcccCC----CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE
Q psy14962          2 QQARIIELLEPKIQ----EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR   77 (216)
Q Consensus         2 ~~~~~~~~l~~~~~----~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   77 (216)
                      ++..|++.+...-.    +++.|||||+|.|.+|..++.... ..+|+++|+++.++...++.. .       .+++.++
T Consensus        40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~-------~~~l~ii  110 (353)
T 1i4w_A           40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E-------GSPLQIL  110 (353)
T ss_dssp             HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T-------TSSCEEE
T ss_pred             HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c-------CCCEEEE
Confidence            35667777652111    468999999999999999998743 248999999999998887765 2       2689999


Q ss_pred             eccCC
Q psy14962         78 CRDGR   82 (216)
Q Consensus        78 ~~d~~   82 (216)
                      .+|+.
T Consensus       111 ~~D~l  115 (353)
T 1i4w_A          111 KRDPY  115 (353)
T ss_dssp             CSCTT
T ss_pred             ECCcc
Confidence            99985

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.85  E-value=4.5e-05  Score=59.16  Aligned_cols=55  Identities=25%  Similarity=0.192  Sum_probs=45.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      +..+++..   ..+|+.|||..||+|..+..+.+.   +.+++|+|+++..++.+++++..
T Consensus       202 ~~~~i~~~---~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          202 IERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             HHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHh
Confidence            44455544   368999999999999999987776   45999999999999999999875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.73  E-value=9.4e-05  Score=57.63  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcC------CCchHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC
Q psy14962         14 IQEGAKVLDIGS------GSGFMSCVFAELVGKT-GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus        14 ~~~~~~vldiG~------G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (216)
                      ++.|.+|||+|+      .+|.   .+++...+. +.|+++|+.+-..                 ..-.++.+|... ..
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~~~s-----------------da~~~IqGD~~~-~~  165 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDFVS-----------------DADSTLIGDCAT-VH  165 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCCBC-----------------SSSEEEESCGGG-EE
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCccccc-----------------CCCeEEEccccc-cc
Confidence            567899999997      5566   345555564 5999999876321                 112458888643 22


Q ss_pred             CCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         87 HQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ..++||+|+++..-.                 ..++-+.+.|+|||.|++-+.....
T Consensus       166 ~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          166 TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            357899999987631                 1234567899999999998877654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.64  E-value=0.00015  Score=58.56  Aligned_cols=92  Identities=22%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+++|++||-+|+|. |..+..+++..+  ++|+++|.+++.++.+++.    |     .+.  ++ .+.. ..  ...+
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~~--v~-~~~~-~~--~~~~  235 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALSM----G-----VKH--FY-TDPK-QC--KEEL  235 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHHT----T-----CSE--EE-SSGG-GC--CSCE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhc----C-----CCe--ec-CCHH-HH--hcCC
Confidence            478999999999987 888999998864  5999999999888877652    2     122  22 2221 11  1269


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |+|+...+....+....+.|+++|+++..-
T Consensus       236 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          236 DFIISTIPTHYDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EEEEECCCSCCCHHHHHTTEEEEEEEEECC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEEC
Confidence            999988887777888999999999998864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.57  E-value=0.00015  Score=58.86  Aligned_cols=98  Identities=15%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-----cCCC--
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-----DGRT--   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----d~~~--   83 (216)
                      .+++|++||-+|+|. |..+..+++..+  ++ |+++|.+++.++.+++. ..        .-+.+...     |...  
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l-~~--------~~~~~~~~~~~~~~~~~~v  244 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI-CP--------EVVTHKVERLSAEESAKKI  244 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH-CT--------TCEEEECCSCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-ch--------hcccccccccchHHHHHHH
Confidence            478999999999987 889999999864  45 99999999999988875 22        12222211     1110  


Q ss_pred             -CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         84 -GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        84 -~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                       .......+|+|+-.......+....++|+++|+++..-
T Consensus       245 ~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          245 VESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEc
Confidence             01123469999998887777788999999999998753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.55  E-value=0.00041  Score=56.40  Aligned_cols=97  Identities=18%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--L   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--~   86 (216)
                      .+++|++||.+|+|. |..+..+++..+. ..|+++|.+++.++.+++.    |     .+  .++..+-..   ..  .
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~l----G-----a~--~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL----G-----AT--HVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH----T-----CS--EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----C-----CC--EEecCCccCHHHHHHHh
Confidence            468899999999988 8888999988742 2799999999988887653    1     11  122211110   00  0


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+.+|+|+........+....+.|+++|++++.-
T Consensus       255 ~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          255 TDGGVNFALESTGSPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeC
Confidence            12369999988877677788999999999998753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.51  E-value=5.8e-05  Score=61.54  Aligned_cols=93  Identities=22%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGLLHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~   88 (216)
                      .+++|++||.+|+|. |..+..+++..  +++|++++.+++.++.+++.    |     .+  .++..   +......  
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~l----G-----a~--~vi~~~~~~~~~~~~--  255 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL----G-----AD--EVVNSRNADEMAAHL--  255 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----T-----CS--EEEETTCHHHHHTTT--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C-----Cc--EEeccccHHHHHHhh--
Confidence            478999999999987 88888899886  45899999999988877652    2     11  12211   1001111  


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +.+|+|+...+....+....+.|+++|+++..
T Consensus       256 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          256 KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             TCEEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred             cCCCEEEECCCCHHHHHHHHHHhccCCEEEEe
Confidence            46999998887777778889999999998875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.50  E-value=9.3e-05  Score=59.82  Aligned_cols=96  Identities=19%  Similarity=0.131  Sum_probs=68.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCCCC--
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRTGL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~~~--   85 (216)
                      .+++|++||.+|+|. |..+..+++..+  ++|+++|.+++.++.+++.    |     .+  .++..+    .....  
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~--~~~~~~~~~~~~~~i~~  231 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNC----G-----AD--VTLVVDPAKEEESSIIE  231 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT----T-----CS--EEEECCTTTSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh----C-----CC--EEEcCcccccHHHHHHH
Confidence            468899999999987 888888898864  4799999999988877642    2     12  122111    10000  


Q ss_pred             -CC---CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 -LH---QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 -~~---~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                       ..   ...+|+|+...+....+....+.|+++|+++..-
T Consensus       232 ~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          232 RIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             HhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence             01   2469999988877767788899999999998753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.49  E-value=0.00031  Score=56.86  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc------CCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD------GRTG   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d------~~~~   84 (216)
                      .+++|++||.+|+|. |..+..+++..  ++ +|+++|.+++.++.+++.    |     .+  .++..+      ....
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l----G-----a~--~vi~~~~~~~~~~~~~  234 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKEI----G-----AD--LVLQISKESPQEIARK  234 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT----T-----CS--EEEECSSCCHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----C-----CC--EEEcCcccccchHHHH
Confidence            468899999999987 88889999885  44 899999999888777642    2     12  122111      0000


Q ss_pred             C--CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 L--LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~--~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .  .....+|+|+...+....+....+.|+++|+++..-
T Consensus       235 i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          235 VEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEe
Confidence            0  001469999988877767788899999999998753

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.49  E-value=0.00029  Score=56.87  Aligned_cols=97  Identities=21%  Similarity=0.189  Sum_probs=70.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---C---C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---T---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~---~   84 (216)
                      .+++|++||-+|+|+ |..+..+++..  ++ +|+++|.+++.++.+++.-.         +  .++..+-.   .   .
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~v~~  229 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALEYGA---------T--DIINYKNGDIVEQILK  229 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHHHTC---------C--EEECGGGSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCC---------c--eEEcCCCcCHHHHHHH
Confidence            468999999999988 88889999875  34 79999999998887765411         1  12221111   0   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ......+|+|+........+....+.|+++|+++..-.
T Consensus       230 ~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          230 ATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             HTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred             HcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecc
Confidence            11234699999888877788999999999999987643

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.48  E-value=0.00058  Score=55.56  Aligned_cols=97  Identities=23%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCC---CC-
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGR---TG-   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~---~~-   84 (216)
                      .+++|++||-.|+|. |..+..+++..+. ..|+++|.+++.++.+++.-.         +  .++..   |..   .. 
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~lGa---------~--~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEEVGA---------T--ATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHTC---------S--EEECTTSSCHHHHHHST
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHcCC---------C--EEECCCCcCHHHHHHhh
Confidence            478999999999987 8888999988642 289999999998887765311         1  12211   110   00 


Q ss_pred             -CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 -LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 -~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                       ....+.+|+|+-..+.........+.|+++|++++.-
T Consensus       247 ~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          247 VGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             TSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             hhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEe
Confidence             0112479999988877777889999999999998853

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.44  E-value=2.7e-05  Score=60.68  Aligned_cols=104  Identities=13%  Similarity=0.108  Sum_probs=75.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+.+.+.. + .+..+||+-+|||.++.++++.   +.+++.+|.++...+..++++..       ..+++++..|+..
T Consensus        81 ~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~  148 (283)
T 2oo3_A           81 LEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVS  148 (283)
T ss_dssp             HHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHH
T ss_pred             HHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHH
Confidence            345555543 3 3567999999999999998884   34999999999999888877654       3678999999642


Q ss_pred             CC----CCCCCccEEEecCCCCc--hH----HHHH--hcCCCCeEEEE
Q psy14962         84 GL----LHQAPFDAIYLSTYVPE--IP----YSIL--LQLKPGGRLVC  119 (216)
Q Consensus        84 ~~----~~~~~~D~i~~~~~~~~--~~----~~~~--~~L~~gG~lv~  119 (216)
                      ..    .+..+||+|+++.++..  ..    +.+.  ..+.++|++++
T Consensus       149 ~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          149 KLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            11    23356999999999972  22    2222  25567888877

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.41  E-value=0.00064  Score=55.83  Aligned_cols=95  Identities=16%  Similarity=0.113  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-C-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-L-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----   85 (216)
                      .+++|++||.+|+|. |..+..+++..+. .+|+++|.+++.++.+++.    |        ..++..+-... .     
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l----G--------a~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSDA----G--------FETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHTT----T--------CEEEETTSSSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----C--------CcEEcCCCcchHHHHHHH
Confidence            468999999999988 8899999998642 2899999999988776532    1        22232111111 0     


Q ss_pred             -CCCCCccEEEecCCCCc--------------hHHHHHhcCCCCeEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPE--------------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~  120 (216)
                       .....+|+|+-......              .+....+.|+++|++++.
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence             11236999998776542              578889999999998765

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.41  E-value=0.00047  Score=55.34  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=69.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---CC-C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---LL-H   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~-~   87 (216)
                      .+++|++||..|+|. |..+..+++..+  ++|+++|.+++.++.+++.    |     .+  .++...-...   .. .
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~--~~i~~~~~~~~~~~~~~  229 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRL----G-----AE--VAVNARDTDPAAWLQKE  229 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT----T-----CS--EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHc----C-----CC--EEEeCCCcCHHHHHHHh
Confidence            468999999999987 999999999864  5999999999988877653    1     11  1221111100   00 1


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+.+|+|+........+....+.|+++|+++..-
T Consensus       230 ~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          230 IGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             HSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeC
Confidence            1368999988777778889999999999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.40  E-value=4.2e-05  Score=61.66  Aligned_cols=97  Identities=13%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe----ccCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC----RDGRTGLLH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~   87 (216)
                      .+ +|++||.+|+|. |..+..+++...++++|+++|.+++.++.+++.    |     .+.  ++.    .|.......
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----G-----a~~--vi~~~~~~~~~~~~~~  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----G-----ADY--VSEMKDAESLINKLTD  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----T-----CSE--EECHHHHHHHHHHHHT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----C-----CCE--EeccccchHHHHHhhc
Confidence            46 899999999987 888899999872234899999999988877653    1     111  221    111111111


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+|+|+.............+.|+++|+++..-
T Consensus       236 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          236 GLGASIAIDLVGTEETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             TCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCccEEEECCCChHHHHHHHHHhhcCCEEEEeC
Confidence            2369999998887767788899999999988753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.37  E-value=0.00041  Score=55.84  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=71.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--CC---CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--TG---LL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~---~~   86 (216)
                      .+++|++||-+|+|. |..+..+++..+ +.+|+++|.+++.++.+++.    |     .+.  ++..+-.  ..   ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~l----G-----a~~--~i~~~~~~~~~v~~~t  235 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAREV----G-----ADA--AVKSGAGAADAIRELT  235 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHHT----T-----CSE--EEECSTTHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc----C-----CCE--EEcCCCcHHHHHHHHh
Confidence            478999999999987 889999998874 45999999999988877653    1     121  2221110  00   01


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ....+|+|+-..+....+....+.|+++|+++..-.
T Consensus       236 ~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          236 GGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECC
Confidence            123699999988877788899999999999987643

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.33  E-value=0.0004  Score=55.15  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCc
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPF   91 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (216)
                      .+++|++||-.|+|. |..+..+++..+  ++|++++ +++.++.+++.    |        .+.+..| ....  ...+
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~l----G--------a~~v~~d-~~~v--~~g~  200 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAKR----G--------VRHLYRE-PSQV--TQKY  200 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHHH----T--------EEEEESS-GGGC--CSCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHHc----C--------CCEEEcC-HHHh--CCCc
Confidence            467899999999977 899999999875  4999999 88888777653    1        1211123 2111  4579


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      |+|+-...-... ....++|+++|+++..
T Consensus       201 Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVNSQNA-AALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC--------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCCchhH-HHHHHHhcCCCEEEEE
Confidence            999977665544 5678999999999886

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.32  E-value=0.00098  Score=54.03  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~   85 (216)
                      .+++|++||-+|+|. |..+..+++..+  ++|+++|.+++.++.+++.    |     .+  .++..+...      ..
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~v~~~  252 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFAL----G-----AD--HGINRLEEDWVERVYAL  252 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH----T-----CS--EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHc----C-----CC--EEEcCCcccHHHHHHHH
Confidence            468899999999887 888889998864  5999999999988877653    2     11  122211110      00


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+..+|+|+...+ ...+....+.|+++|++++.-.
T Consensus       253 ~~g~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          253 TGDRGADHILEIAG-GAGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             HTTCCEEEEEEETT-SSCHHHHHHHEEEEEEEEEECC
T ss_pred             hCCCCceEEEECCC-hHHHHHHHHHhhcCCEEEEEec
Confidence            11236999998777 5567888899999999987643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.29  E-value=0.00057  Score=55.83  Aligned_cols=96  Identities=21%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc------CCC---
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD------GRT---   83 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d------~~~---   83 (216)
                      +++|++||.+|+|. |..+..+++..+ ..+|++++.+++.++.+++.    |     .+  .++..+      ...   
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~~~~v~  260 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI----G-----AD--LTLNRRETSVEERRKAIM  260 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT----T-----CS--EEEETTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHHc----C-----Cc--EEEeccccCcchHHHHHH
Confidence            67899999999877 888899998863 14999999999888877642    2     12  122211      100   


Q ss_pred             CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         84 GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .......+|+|+-.......+....+.|+++|+++..-
T Consensus       261 ~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          261 DITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence            01112369999988887777888999999999988753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.27  E-value=6.5e-05  Score=60.96  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC---CCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG---RTGLLHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~   88 (216)
                      .+++|++||.+|+|. |..+..+++..+  ++|++++.+++.++.+++.    |     .+.+ +...+.   .....  
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~~v-~~~~~~~~~~~~~~--  241 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKM----G-----ADHY-IATLEEGDWGEKYF--  241 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH----T-----CSEE-EEGGGTSCHHHHSC--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHc----C-----CCEE-EcCcCchHHHHHhh--
Confidence            478899999999977 888889998874  4899999999888877653    1     1111 111111   00111  


Q ss_pred             CCccEEEecCCC--CchHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYV--PEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.+|+|+...+.  ...+....+.|+++|+++..-
T Consensus       242 ~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          242 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECC
T ss_pred             cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEec
Confidence            469999988776  566677889999999988753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.24  E-value=0.0016  Score=53.48  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++||.+|+|. |..+..+++..+. ..|+++|.+++.++.+++.    |        .+++.-.-....      
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~l----G--------a~~i~~~~~~~~~~~v~~  248 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ----G--------FEIADLSLDTPLHEQIAA  248 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----T--------CEEEETTSSSCHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHc----C--------CcEEccCCcchHHHHHHH
Confidence            468899999999988 8899999998642 2799999999988877642    1        222221111100      


Q ss_pred             -CCCCCccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~  120 (216)
                       .....+|+|+-..+...               .+....++|+++|++++.
T Consensus       249 ~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          249 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence             11236999998766542               578888999999999775

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.21  E-value=0.0015  Score=53.03  Aligned_cols=97  Identities=20%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~~~-----   85 (216)
                      .+++|++||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.    |     .+  .++..+ .....     
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l----G-----a~--~vi~~~~~~~~~~~~i~  255 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIEL----G-----AT--ECLNPKDYDKPIYEVIC  255 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHT----T-----CS--EEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----C-----Cc--EEEecccccchHHHHHH
Confidence            467899999999987 8888999988742 2899999999888877642    2     11  122111 00000     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                       ...+.+|+|+-.......+....+.|+++ |+++..-
T Consensus       256 ~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          256 EKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence             01236999998887767778889999999 9988754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.21  E-value=0.0012  Score=53.76  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~~~-----   85 (216)
                      .+++|++||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++.    |     .+.  ++... .....     
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~~l----G-----a~~--vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAKKF----G-----VNE--FVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHHTT----T-----CCE--EECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----C-----CcE--EEccccCchhHHHHHH
Confidence            467899999999987 8899999998742 2899999999988877642    1     121  22111 00000     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                       ...+.+|+|+........+....+.|++| |++++.-
T Consensus       258 ~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          258 DLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEc
Confidence             11237999999888777888999999997 9988754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.20  E-value=0.00027  Score=56.87  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCC-eEEEeccCCC---CCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR-LHLRCRDGRT---GLLH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~---~~~~   87 (216)
                      .+++|++||-+|+|+ |..+..+++..+ +.+|+++|.+++.++.+++...         +. ++....|...   ....
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~~Ga---------~~~i~~~~~~~~~~v~~~t~  229 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKKIGA---------DVTINSGDVNPVDEIKKITG  229 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHHTTC---------SEEEEC-CCCHHHHHHHHTT
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhhcCC---------eEEEeCCCCCHHHHhhhhcC
Confidence            468899999999988 566667776643 4699999999988777665321         11 1111111110   1112


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ...+|.++........+....+.|+++|++++.-.
T Consensus       230 g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          230 GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEEeccCcchhheeheeecCCceEEEEec
Confidence            34578888888877788889999999999987643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.18  E-value=0.0019  Score=52.34  Aligned_cols=92  Identities=15%  Similarity=0.089  Sum_probs=66.2

Q ss_pred             CCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc--CC---CCCCCC
Q psy14962         16 EGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD--GR---TGLLHQ   88 (216)
Q Consensus        16 ~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~---~~~~~~   88 (216)
                      +|++||-.| +|. |..+..+++..+ +.+|++++.+++.++.+++.    |     .+.  ++...  ..   ... ..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~l----G-----ad~--vi~~~~~~~~~v~~~-~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKSL----G-----AHH--VIDHSKPLAAEVAAL-GL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHHT----T-----CSE--EECTTSCHHHHHHTT-CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHc----C-----CCE--EEeCCCCHHHHHHHh-cC
Confidence            788999998 666 899999998753 45999999999888877652    2     111  22111  00   011 23


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +.+|+|+...+....+....++|+++|+++..
T Consensus       238 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          238 GAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence            57999998877666778889999999999876

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.18  E-value=0.0016  Score=51.89  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G   84 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~   84 (216)
                      .+++|++||-.| +|. |..+..+++..+  ++|++++.+++.++.+++.    +      .. .++..+-..      .
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----G------a~-~~~~~~~~~~~~~~~~  203 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKAL----G------AW-ETIDYSHEDVAKRVLE  203 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH----T------CS-EEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C------CC-EEEeCCCccHHHHHHH
Confidence            467899999999 555 888888888864  5999999999988877653    1      11 122111110      0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ......+|+|+.+... .......++|+++|+++..-.
T Consensus       204 ~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          204 LTDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             HTTTCCEEEEEESSCG-GGHHHHHTTEEEEEEEEECCC
T ss_pred             HhCCCCceEEEECCCh-HHHHHHHHHhcCCCEEEEEec
Confidence            0122469999987776 566788999999999988643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.17  E-value=0.0017  Score=52.82  Aligned_cols=96  Identities=13%  Similarity=0.074  Sum_probs=68.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCC----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGL----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~----   85 (216)
                      .+++|++||-+|+|. |..+..+++..  ++ +|+++|.+++.++.+++.    |     .+  .++.. +.....    
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l----G-----a~--~vi~~~~~~~~~~~~v  258 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKAL----G-----AT--DCLNPRELDKPVQDVI  258 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHT----T-----CS--EEECGGGCSSCHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh----C-----Cc--EEEccccccchHHHHH
Confidence            467899999999987 88888999886  44 899999999888777542    1     11  12211 100000    


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                        ...+.+|+|+-.......+....+.|+++ |++++.-
T Consensus       259 ~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          259 TELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEEC
Confidence              01136999998887767778899999999 9998753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.16  E-value=0.0022  Score=52.04  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-----   85 (216)
                      .+++|++||-+|+|. |..+..+++..+. ..|+++|.+++.++.+++.    |     .+  .++. .+.....     
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~~~v~  254 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF----G-----AT--ECINPQDFSKPIQEVLI  254 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH----T-----CS--EEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----C-----Cc--eEeccccccccHHHHHH
Confidence            467899999999987 8888899988642 2899999999988877643    2     11  1221 1100000     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                       ...+.+|+|+........+....+.|+++ |+++..-
T Consensus       255 ~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          255 EMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEe
Confidence             01236999998887767778899999999 9998753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.15  E-value=0.0035  Score=50.24  Aligned_cols=98  Identities=17%  Similarity=0.053  Sum_probs=69.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~   85 (216)
                      .+.+|++||-.|+|. |.++..+++..+. ..++++|.+++.++.+++.-         ..  .++...-..      ..
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~~lG---------a~--~~i~~~~~~~~~~~~~~  224 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDISSEKLALAKSFG---------AM--QTFNSSEMSAPQMQSVL  224 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---------CS--EEEETTTSCHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCC-cEEEEEechHHHHHHHHHcC---------Ce--EEEeCCCCCHHHHHHhh
Confidence            467899999999988 7788888888652 36789999999888776531         11  222211110      01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .....+|+|+........+....++|+++|++++.-.
T Consensus       225 ~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          225 RELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             GGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCC
T ss_pred             cccCCcccccccccccchhhhhhheecCCeEEEEEec
Confidence            1235689999888888888889999999999987543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.15  E-value=0.002  Score=53.20  Aligned_cols=64  Identities=19%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHH--hCCCCCCC-CCeEEEeccC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFA-ELVGKTGRVFGVEHMREQCEDAWETVMR--IRPDLLND-GRLHLRCRDG   81 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~-~~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~-~~~~~~~~d~   81 (216)
                      +.++..|+|+||+.|..+..++ +..++.++|+++|++|...+..++++..  ++.    . .++.++...+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~----~~~~v~~~~~al  291 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN----FASRITVHGCGA  291 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTST----TGGGEEEECSEE
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccC----CCCCEEEEEeEE
Confidence            4788999999999999999988 4543336999999999999999998876  211    2 4666665543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.11  E-value=0.002  Score=52.41  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=68.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCC----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGL----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~----   85 (216)
                      .+++|++||.+|+|. |..+..+++..  ++ +|+++|.+++.++.+++.    |     .+  .++.. +.....    
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~~~~  255 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVF----G-----AT--DFVNPNDHSEPISQVL  255 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHT----T-----CC--EEECGGGCSSCHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh----C-----Cc--eEEeccccchhHHHHH
Confidence            467899999999987 88888889885  44 899999999988877642    1     11  12211 100000    


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                        ...+.+|+|+........+....+.|+++ |+++..-
T Consensus       256 ~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          256 SKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEc
Confidence              01136999998887767778899999999 9988753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.11  E-value=0.0027  Score=52.20  Aligned_cols=97  Identities=15%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~   84 (216)
                      .+++|++||-+|+|. |..+..+++..  ++ .|+++|.+++.++.+++.-.         +  .++..+-..      .
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~lGa---------~--~vi~~~~~~~~~~i~~  276 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKELGA---------D--HVIDPTKENFVEAVLD  276 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHTC---------S--EEECTTTSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHcCC---------C--EEEcCCCCCHHHHHHH
Confidence            468899999999987 88889999886  44 89999999998888865411         1  122111110      0


Q ss_pred             CCCCCCccEEEecCCCC-chHHHHHhcC----CCCeEEEEeec
Q psy14962         85 LLHQAPFDAIYLSTYVP-EIPYSILLQL----KPGGRLVCGVG  122 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~-~~~~~~~~~L----~~gG~lv~~~~  122 (216)
                      ......+|+|+-..+.. .....+.+.|    +++|++++.-.
T Consensus       277 ~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          277 YTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             HhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            11234699999877766 2445555555    99999988543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.04  E-value=0.002  Score=51.65  Aligned_cols=94  Identities=19%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-C---
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-H---   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~---   87 (216)
                      .+++|++||.+|+|. |..+..+++..+  ++|++++.+++.++.+++.    +     .+  .++  |...... .   
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~--~~~--d~~~~~~~~~~~  225 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKEL----G-----AD--LVV--NPLKEDAAKFMK  225 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT----T-----CS--EEE--CTTTSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHC----C-----CC--EEe--cCCCccHHHHHH
Confidence            468899999999976 888888888864  5999999999888777542    2     11  111  2211100 0   


Q ss_pred             --CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         88 --QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        88 --~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                        .+.+|+|+...+.........+.|+++|+++..-
T Consensus       226 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          226 EKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             HHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEec
Confidence              0469999988877677788899999999988753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.03  E-value=0.0027  Score=51.62  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=67.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CCCCC----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGL----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~~~----   85 (216)
                      .+++|++||.+|+|. |..+..+++..  ++ +|+++|.+++.++.+++.    |     .+  .++..+ .....    
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~~~~  254 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEV----G-----AT--ECVNPQDYKKPIQEVL  254 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHT----T-----CS--EEECGGGCSSCHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHh----C-----Cc--eEecccccchhHHHHH
Confidence            467899999999987 88888888885  44 899999999888777542    1     11  122111 00000    


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                        ...+.+|+|+........+....+.|+++ |+++..-
T Consensus       255 ~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          255 TEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred             HHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEec
Confidence              01236999998887767778889999999 9988753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.01  E-value=0.0022  Score=51.60  Aligned_cols=95  Identities=19%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~   84 (216)
                      .+ +|++||-+|+|. |..+..+++..  ++ +|+++|.+++.++.+++.    +     .+  .++..+-..      .
T Consensus       165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~~----G-----a~--~~~~~~~~~~~~~v~~  230 (348)
T 2d8a_A          165 PI-SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKKV----G-----AD--YVINPFEEDVVKEVMD  230 (348)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHH----T-----CS--EEECTTTSCHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----C-----CC--EEECCCCcCHHHHHHH
Confidence            45 899999999976 88888888875  45 899999999888777643    1     11  122111100      0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+|+...+.........+.|+++|+++..-
T Consensus       231 ~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          231 ITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence            0112369999998887677788899999999988753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.98  E-value=0.0021  Score=51.43  Aligned_cols=95  Identities=19%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G   84 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~   84 (216)
                      .+++|++||-.| +|. |..+..+++..  +++|++++.+++.++.+++.    +     .+  .++..+-..      .
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----a~--~~~~~~~~~~~~~~~~  211 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKEY----G-----AE--YLINASKEDILRQVLK  211 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CS--EEEETTTSCHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C-----Cc--EEEeCCCchHHHHHHH
Confidence            468899999999 444 88888888885  45999999999888776542    1     11  122211110      0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+|+.+.+. ..+....++|+++|+++..-
T Consensus       212 ~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          212 FTNGKGVDASFDSVGK-DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             HTTTSCEEEEEECCGG-GGHHHHHHHEEEEEEEEECC
T ss_pred             HhCCCCceEEEECCCh-HHHHHHHHHhccCCEEEEEc
Confidence            0113469999987775 56788889999999998853

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.95  E-value=0.00079  Score=54.46  Aligned_cols=97  Identities=18%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             cCC-CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCC
Q psy14962         13 KIQ-EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQA   89 (216)
Q Consensus        13 ~~~-~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~   89 (216)
                      .+. +|++||-+|+|. |..+..+++..+  ++|++++.+++.++.+++.   .|     .+.+  +..+-.... ...+
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~~---lG-----a~~v--i~~~~~~~~~~~~~  243 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQD---LG-----ADDY--VIGSDQAKMSELAD  243 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHTT---SC-----CSCE--EETTCHHHHHHSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHH---cC-----Ccee--eccccHHHHHHhcC
Confidence            356 899999999987 888888998875  4999999998877666522   11     1221  211100000 0013


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+|+|+...+....+....+.|+++|+++..-
T Consensus       244 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          244 SLDYVIDTVPVHHALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             TEEEEEECCCSCCCSHHHHTTEEEEEEEEECS
T ss_pred             CCCEEEECCCChHHHHHHHHHhccCCEEEEeC
Confidence            69999988777666778889999999998753

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.92  E-value=0.0016  Score=52.59  Aligned_cols=92  Identities=17%  Similarity=0.214  Sum_probs=65.1

Q ss_pred             CCCC------CeEEEEcCCC-chHH-HHHH-HHhCCCcE-EEEEeCCHH---HHHHHHHHHHHhCCCCCCCCCeEEEecc
Q psy14962         14 IQEG------AKVLDIGSGS-GFMS-CVFA-ELVGKTGR-VFGVEHMRE---QCEDAWETVMRIRPDLLNDGRLHLRCRD   80 (216)
Q Consensus        14 ~~~~------~~vldiG~G~-G~~~-~~l~-~~~~~~~~-v~~~D~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~d   80 (216)
                      +++|      ++||-+|+|. |..+ ..++ +..+  ++ |++++.+++   .++.+++.    |        .+.+  |
T Consensus       164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~G--a~~Vi~~~~~~~~~~~~~~~~~l----G--------a~~v--~  227 (357)
T 2b5w_A          164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKG--YENLYCLGRRDRPDPTIDIIEEL----D--------ATYV--D  227 (357)
T ss_dssp             HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTC--CCEEEEEECCCSSCHHHHHHHHT----T--------CEEE--E
T ss_pred             CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcC--CcEEEEEeCCcccHHHHHHHHHc----C--------Cccc--C
Confidence            5688      9999999976 8888 8888 7653  45 999999887   77776542    1        2222  2


Q ss_pred             CCCC-CCC----CCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         81 GRTG-LLH----QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        81 ~~~~-~~~----~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .... ...    .+.+|+|+-.......+....+.|+++|+++..-
T Consensus       228 ~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          228 SRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             TTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence            2111 000    1369999988777667788899999999998753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.92  E-value=0.0023  Score=47.05  Aligned_cols=93  Identities=20%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             cCCCCCeEEEEcC--CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGS--GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----   85 (216)
                      .+.+|++||..|+  |.|.....+++..+  ++|+++|.+++..+.+++    .+     .. . +.  |.....     
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~----~g-----~~-~-~~--d~~~~~~~~~~   99 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LG-----VE-Y-VG--DSRSVDFADEI   99 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TC-----CS-E-EE--ETTCSTHHHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cC-----CC-E-Ee--eCCcHHHHHHH
Confidence            4678999999995  33777777777654  599999999887765543    12     11 1 11  221110     


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 ---LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .....+|+++.+.. ........+.|+++|+++..-
T Consensus       100 ~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          100 LELTDGYGVDVVLNSLA-GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             HHHTTTCCEEEEEECCC-THHHHHHHHTEEEEEEEEECS
T ss_pred             HHHhCCCCCeEEEECCc-hHHHHHHHHHhccCCEEEEEc
Confidence               11236999998765 456688889999999998753

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.89  E-value=0.0022  Score=51.14  Aligned_cols=55  Identities=20%  Similarity=0.232  Sum_probs=43.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHH
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMR---EQCEDAWETVMR   63 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~~a~~~~~~   63 (216)
                      +..++...   -.+|+.|||..||+|..+.+..+.   +.+.+|+|+++   ...+.+++++..
T Consensus       232 ~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          232 IERLVRAL---SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             HHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHH
Confidence            44555544   368999999999999999887776   45999999999   999999888765

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.85  E-value=0.0019  Score=51.85  Aligned_cols=96  Identities=17%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--C---CC
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--T---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~   85 (216)
                      .+++|++||-.|+|.  |..+..+++..+  ++|++++.+++.++.+++.    +      ....+...+..  .   ..
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~l----g------a~~~~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLRL----G------AAYVIDTSTAPLYETVMEL  208 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH----T------CSEEEETTTSCHHHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhC----C------CcEEEeCCcccHHHHHHHH
Confidence            468899999999974  888888888864  5999999999888877653    2      11111111110  0   00


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+.+........ ..+.|+++|+++..-
T Consensus       209 ~~~~g~Dvvid~~g~~~~~~-~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          209 TNGIGADAAIDSIGGPDGNE-LAFSLRPNGHFLTIG  243 (340)
T ss_dssp             TTTSCEEEEEESSCHHHHHH-HHHTEEEEEEEEECC
T ss_pred             hCCCCCcEEEECCCChhHHH-HHHHhcCCCEEEEEe
Confidence            12246999998777665544 448999999998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.85  E-value=0.0021  Score=51.39  Aligned_cols=55  Identities=18%  Similarity=0.123  Sum_probs=44.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      +..++...   ..+|+.|||..||+|..+.+..+.   +.+.+|+|+++...+.+++++..
T Consensus       242 ~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          242 PEFFIRML---TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             HHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            44455444   378999999999999998877665   45999999999999999888654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.84  E-value=0.00045  Score=68.74  Aligned_cols=100  Identities=14%  Similarity=0.089  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGK----TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~   89 (216)
                      .+..+|||+|+|+|..+..+.+.++.    ..+++..|+|+...+.+++++...        .+.....|.... .....
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~--------di~~~~~d~~~~~~~~~~ 1310 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL--------HVTQGQWDPANPAPGSLG 1310 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH--------TEEEECCCSSCCCC----
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc--------ccccccccccccccCCCC
Confidence            35679999999999887776666542    136788899998888887776552        222222232211 11345


Q ss_pred             CccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         90 PFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        90 ~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .||+|++...++.      .+.+++++|||||++++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            6999999887653      56788999999999988653

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.83  E-value=0.0044  Score=50.18  Aligned_cols=92  Identities=21%  Similarity=0.110  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHHhCCCCCCCCCeEEEec-cCCCCCC-CCCC
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMR---EQCEDAWETVMRIRPDLLNDGRLHLRCR-DGRTGLL-HQAP   90 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~-~~~~   90 (216)
                      |++||-+|+|. |..+..+++..+  ++|++++.++   +.++.+++.    +        .+.+.. +...... ..+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~~----g--------a~~v~~~~~~~~~~~~~~~  246 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEET----K--------TNYYNSSNGYDKLKDSVGK  246 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHHH----T--------CEEEECTTCSHHHHHHHCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHHh----C--------CceechHHHHHHHHHhCCC
Confidence            99999999965 777888888764  4999999987   766666542    2        222211 1110000 0146


Q ss_pred             ccEEEecCCCCchH-HHHHhcCCCCeEEEEeec
Q psy14962         91 FDAIYLSTYVPEIP-YSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        91 ~D~i~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  122 (216)
                      +|+|+...+..... ....+.|+++|+++..-.
T Consensus       247 ~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          247 FDVIIDATGADVNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EEEEEECCCCCTHHHHHHGGGEEEEEEEEECSC
T ss_pred             CCEEEECCCChHHHHHHHHHHHhcCCEEEEEec
Confidence            99999988887777 889999999999887543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.82  E-value=0.0057  Score=51.12  Aligned_cols=95  Identities=17%  Similarity=0.151  Sum_probs=66.5

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC------
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG------   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------   84 (216)
                      .+++|++||-+|+ |. |..+..+++..  ++++++++.+++.++.+++.    |     ..  .++...-...      
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~d~~~~~~~  291 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRAM----G-----AE--AIIDRNAEGYRFWKDE  291 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T-----CC--EEEETTTTTCCSEEET
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHhh----C-----Cc--EEEecCcCcccccccc
Confidence            4688999999998 66 88999999886  45999999899888877653    2     11  1121110000      


Q ss_pred             -----------------CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 -----------------LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 -----------------~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                                       ......+|+|+-..+. ..+....++|+++|+++..-
T Consensus       292 ~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          292 NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             TEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESC
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEe
Confidence                             0112479999987765 56788889999999998753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.80  E-value=0.0065  Score=48.72  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=66.8

Q ss_pred             cCCCCCeEEEEcC--CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGS--GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----   85 (216)
                      .++++.+||..|+  |.|..+..+++..  +++|++++.+++.++.+++.    +     ...  ++  |.....     
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~----g-----a~~--~~--d~~~~~~~~~~  227 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKAL----G-----ADE--TV--NYTHPDWPKEV  227 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T-----CSE--EE--ETTSTTHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C-----CCE--EE--cCCcccHHHHH
Confidence            4678999999998  4488888888875  45999999999888777542    2     111  22  221110     


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 ---LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .....+|+|+.... ........+.|+++|+++..-
T Consensus       228 ~~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          228 RRLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             HHHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESS
T ss_pred             HHHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEEe
Confidence               11246999999888 677788999999999988754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.78  E-value=0.0037  Score=49.67  Aligned_cols=93  Identities=17%  Similarity=0.088  Sum_probs=62.3

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-CCCCCC
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-GLLHQA   89 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~   89 (216)
                      .+++|++||-.| +|. |..+..+++..+  ++|++++ +++.++.+++.    |     .+  .++..+-.. ....-.
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~~l----G-----a~--~~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLKAL----G-----AE--QCINYHEEDFLLAIST  214 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHHHH----T-----CS--EEEETTTSCHHHHCCS
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHHHc----C-----CC--EEEeCCCcchhhhhcc
Confidence            478999999997 776 999999999864  5899987 45445555442    2     12  122211111 001114


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .+|+|+....-... ....++|+++|+++..
T Consensus       215 g~D~v~d~~g~~~~-~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          215 PVDAVIDLVGGDVG-IQSIDCLKETGCIVSV  244 (321)
T ss_dssp             CEEEEEESSCHHHH-HHHGGGEEEEEEEEEC
T ss_pred             CCCEEEECCCcHHH-HHHHHhccCCCEEEEe
Confidence            69999987776555 7888999999999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.77  E-value=0.0058  Score=48.59  Aligned_cols=96  Identities=17%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--C---CC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--T---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~   85 (216)
                      .++++++||..|+ |. |.....+++..+  ++|++++.+++.++.+++.    +      ....+...+..  .   ..
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~----g------~~~~~~~~~~~~~~~~~~~  204 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA----G------AWQVINYREEDLVERLKEI  204 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH----T------CSEEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----C------CCEEEECCCccHHHHHHHH
Confidence            4678999999994 33 778888887764  5999999999887777652    2      11111111110  0   00


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+++.+.. ........+.|+++|+++..-
T Consensus       205 ~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          205 TGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECC
T ss_pred             hCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEe
Confidence            11236999998887 677788999999999988754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.77  E-value=0.0042  Score=49.94  Aligned_cols=93  Identities=19%  Similarity=0.179  Sum_probs=65.4

Q ss_pred             CCCeEEEE-cCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc--CCCCC--CCCC
Q psy14962         16 EGAKVLDI-GSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD--GRTGL--LHQA   89 (216)
Q Consensus        16 ~~~~vldi-G~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~~~--~~~~   89 (216)
                      +|++||-. |+|. |..+..+++..+  ++|++++.+++.++.+++.    |     .+  .++..+  .....  ....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~~~~~~~  216 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKM----G-----AD--IVLNHKESLLNQFKTQGIE  216 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHHH----T-----CS--EEECTTSCHHHHHHHHTCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----C-----Cc--EEEECCccHHHHHHHhCCC
Confidence            89999999 5666 888899998864  5999999999888877763    2     11  112111  00000  1234


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .+|+|+........+..+.++|+++|+++...
T Consensus       217 g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          217 LVDYVFCTFNTDMYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHEEEEEEEEESS
T ss_pred             CccEEEECCCchHHHHHHHHHhccCCEEEEEC
Confidence            69999988776667788889999999997653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.74  E-value=0.0042  Score=49.88  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc--CCC---CC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD--GRT---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~---~~   85 (216)
                      .+++|++||-.|+ |. |..+..+++..  +++|++++.+++.++.+++.    +     ..  .++..+  ...   ..
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----a~--~v~~~~~~~~~~v~~~  222 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSV----G-----AD--IVLPLEEGWAKAVREA  222 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----T-----CS--EEEESSTTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----Cc--EEecCchhHHHHHHHH
Confidence            4678999999998 44 88888899886  45999999999888777653    2     11  122222  100   00


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+...... .+....+.|+++|+++..-
T Consensus       223 ~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          223 TGGAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTTSCEEEEEESCC---CHHHHHHTEEEEEEEEEC-
T ss_pred             hCCCCceEEEECCchh-HHHHHHHhhcCCCEEEEEE
Confidence            1123699999877754 5677889999999998753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.74  E-value=0.0016  Score=52.84  Aligned_cols=96  Identities=17%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             CC-CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCC
Q psy14962         14 IQ-EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAP   90 (216)
Q Consensus        14 ~~-~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~   90 (216)
                      +. +|++||-+|+|. |..+..+++..+  ++|++++.+++.++.+.+.+   |     .+  .++..+-.... ...+.
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~l---G-----a~--~v~~~~~~~~~~~~~~~  251 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALKNF---G-----AD--SFLVSRDQEQMQAAAGT  251 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHHTS---C-----CS--EEEETTCHHHHHHTTTC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhc---C-----Cc--eEEeccCHHHHHHhhCC
Confidence            56 899999999877 888888888864  59999999988776655321   1     12  12211100000 00136


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +|+|+...+.........+.|+++|+++..-
T Consensus       252 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          252 LDGIIDTVSAVHPLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEEEECCSSCCCSHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCcHHHHHHHHHHHhcCCEEEEEc
Confidence            9999988777666678889999999988753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.74  E-value=0.0032  Score=50.62  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=66.5

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-----C
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-----G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~   84 (216)
                      .+.++++||..|+|.  |..+..+++.. +  ++|+++|.+++.++.+++.    +      ....+...+...     .
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G--a~Vi~~~~~~~~~~~~~~~----g------~~~~~~~~~~~~~~~~~~  234 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRA----G------ADYVINASMQDPLAEIRR  234 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHH----T------CSEEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHh----C------CCEEecCCCccHHHHHHH
Confidence            467899999999983  77778888876 4  4899999999888777542    2      111111111100     0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....+.+|+++........+....+.|+++|+++..-
T Consensus       235 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          235 ITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             HhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEEC
Confidence            0111479999988877667778889999999988753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.69  E-value=0.00098  Score=53.05  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=62.8

Q ss_pred             eEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-CCCCCCCccEEE
Q psy14962         19 KVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-GLLHQAPFDAIY   95 (216)
Q Consensus        19 ~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~i~   95 (216)
                      +||-.|+ |. |..+..+++..+  ++|++++.+++.++.+++.    |     .+.+ +...+... .....+.+|+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~~v-i~~~~~~~~~~~~~~~~d~v~  216 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKSL----G-----ANRI-LSRDEFAESRPLEKQLWAGAI  216 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHH----T-----CSEE-EEGGGSSCCCSSCCCCEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----C-----CCEE-EecCCHHHHHhhcCCCccEEE
Confidence            4999998 55 899999999864  5999999999988888653    2     1111 22222111 111235799998


Q ss_pred             ecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         96 LSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        96 ~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      -...-. .+....++|+++|+++..-.
T Consensus       217 d~~g~~-~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          217 DTVGDK-VLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ESSCHH-HHHHHHHTEEEEEEEEECCC
T ss_pred             ECCCcH-HHHHHHHHHhcCCEEEEEec
Confidence            766544 67888899999999987643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.61  E-value=0.00079  Score=54.81  Aligned_cols=94  Identities=21%  Similarity=0.150  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCC
Q psy14962         14 IQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQ   88 (216)
Q Consensus        14 ~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~   88 (216)
                      +++|++||-.| +|. |..+..+++..+  ++|++++ +++.++.+++    .|     .+  .++..+-.   ......
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~~----lG-----a~--~v~~~~~~~~~~~~~~~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVRK----LG-----AD--DVIDYKSGSVEEQLKSL  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TT-----CS--EEEETTSSCHHHHHHTS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHHH----cC-----CC--EEEECCchHHHHHHhhc
Confidence            67899999999 566 888899998864  5899998 6665555533    22     12  12211100   001112


Q ss_pred             CCccEEEecCCCC-chHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVP-EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~-~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+|+|+...+.. .......+.|+++|+++..-
T Consensus       247 ~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          247 KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESC
T ss_pred             CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeC
Confidence            4699999887766 34466778999999998753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.59  E-value=0.00045  Score=54.52  Aligned_cols=89  Identities=21%  Similarity=0.169  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec----cCCCCCCC
Q psy14962         14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR----DGRTGLLH   87 (216)
Q Consensus        14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~   87 (216)
                      +++|++||-.|+ |. |..+..+++..+  ++|++++.+++.++.+++.    +     ...  ++..    +.....  
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----g-----a~~--~~~~~~~~~~~~~~--  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLAL----G-----AEE--AATYAEVPERAKAW--  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHT----T-----CSE--EEEGGGHHHHHHHT--
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhc----C-----CCE--EEECCcchhHHHHh--
Confidence            678999999998 44 888888888864  5999999998887776542    2     121  2211    111111  


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                       ..+|+|+. .+. .......+.|+++|+++..
T Consensus       188 -~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          188 -GGLDLVLE-VRG-KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             -TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEEC
T ss_pred             -cCceEEEE-CCH-HHHHHHHHhhccCCEEEEE
Confidence             46999998 665 5678889999999998874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.54  E-value=0.0097  Score=47.94  Aligned_cols=95  Identities=13%  Similarity=-0.051  Sum_probs=64.1

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~   84 (216)
                      .+++|++||..|+ |. |..+..+++..  +++|++++.+++.++.+++.    +     .. . ++..+-..      .
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----~~-~-~~~~~~~~~~~~~~~  225 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKL----G-----AA-A-GFNYKKEDFSEATLK  225 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----T-----CS-E-EEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----C-----Cc-E-EEecCChHHHHHHHH
Confidence            4678999999984 33 77888888775  45999999999888777432    2     11 1 11111100      0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+++.+.+.. ......++|+++|+++..-
T Consensus       226 ~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          226 FTKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             HTTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEECC
T ss_pred             HhcCCCceEEEECCCch-HHHHHHHhccCCCEEEEEe
Confidence            01124699999887765 5677789999999998754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.50  E-value=0.0013  Score=52.91  Aligned_cols=94  Identities=15%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CCC-
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GLL-   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~-   86 (216)
                      .+ +|++||.+|+|. |..+..+++..  ++ +|++++.+++.++.+++. .         +  .++..+-..   ... 
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a---------~--~v~~~~~~~~~~~~~~  226 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A---------D--RLVNPLEEDLLEVVRR  226 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C---------S--EEECTTTSCHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H---------H--hccCcCccCHHHHHHH
Confidence            46 899999999976 88888888875  45 899999998877666542 1         1  111111000   000 


Q ss_pred             -CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 -HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 -~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                       ....+|+|+...+.........+.|+++|+++..-
T Consensus       227 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          227 VTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence             02469999988877667788899999999988753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.47  E-value=0.01  Score=48.03  Aligned_cols=95  Identities=19%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--   85 (216)
                      .+++|++||-.| +|. |..+..+++..  +++|++++.+++.++.+++.    |     ..  .++..+-..   ..  
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~----G-----a~--~~~~~~~~~~~~~~~~  226 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKSL----G-----CD--RPINYKTEPVGTVLKQ  226 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CS--EEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHc----C-----Cc--EEEecCChhHHHHHHH
Confidence            468899999999 454 88889999886  45999999998887777642    2     11  122111110   00  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+..... .....+.+.|+++|+++..-
T Consensus       227 ~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          227 EYPEGVDVVYESVGG-AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             HCTTCEEEEEECSCT-HHHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCCCEEEECCCH-HHHHHHHHHHhcCCEEEEEe
Confidence            012469999987765 56678889999999988753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.43  E-value=0.0072  Score=48.24  Aligned_cols=96  Identities=22%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--CCC--C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--TGL--L   86 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~--~   86 (216)
                      .+++|++||-.|+ |. |..+..+++..  +++|++++.+++.++.+.+.   .+     .. ..+...+..  ...  .
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~---~g-----~~-~~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVEE---LG-----FD-GAIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---TC-----CS-EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---cC-----CC-EEEECCCHHHHHHHHHh
Confidence            4789999999998 43 88888888875  45999999999877766322   11     11 111111110  000  0


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+.+|+++.+... ..+....+.|+++|+++..
T Consensus       215 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          215 CPKGIDVFFDNVGG-EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred             cCCCceEEEECCCc-chHHHHHHHHhhCCEEEEE
Confidence            12469999987764 4668888999999999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.43  E-value=0.002  Score=51.33  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             cCCCCC-eEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-CC--CCC
Q psy14962         13 KIQEGA-KVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-RT--GLL   86 (216)
Q Consensus        13 ~~~~~~-~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~--~~~   86 (216)
                      .++++. +||-.|+ |. |..+..+++..+  ++|++++.+++.++.+++.    |     .+.+ +...+. ..  ...
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~l----G-----a~~v-~~~~~~~~~~~~~~  213 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQL----G-----ASEV-ISREDVYDGTLKAL  213 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHH----T-----CSEE-EEHHHHCSSCCCSS
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C-----CcEE-EECCCchHHHHHHh
Confidence            366775 8999997 55 888889998875  4899999988877777642    2     1111 111111 11  111


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+.+|+|+....- ..+....+.++++|+++..-
T Consensus       214 ~~~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          214 SKQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             CCCCEEEEEESCCT-HHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCccEEEECCcH-HHHHHHHHhhcCCCEEEEEe
Confidence            23469999987765 46788889999999998753

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.41  E-value=0.011  Score=47.66  Aligned_cols=96  Identities=16%  Similarity=0.053  Sum_probs=65.4

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC---C--
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG---L--   85 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~---~--   85 (216)
                      .+++|++||-.| +|. |..+..+++..  +++|++++.+++.++.+++.    +     ..  .++..+-...   .  
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----G-----a~--~~~~~~~~~~~~~~~~  230 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERL----G-----AK--RGINYRSEDFAAVIKA  230 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T-----CS--EEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----CC--EEEeCCchHHHHHHHH
Confidence            467899999995 454 88888888886  45999999999988877653    2     11  1221111100   0  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .....+|+|+...+.. ......+.|+++|+++..-.
T Consensus       231 ~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          231 ETGQGVDIILDMIGAA-YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HHSSCEEEEEESCCGG-GHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCceEEEECCCHH-HHHHHHHHhccCCEEEEEEe
Confidence            0134699999877654 56778899999999887643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.39  E-value=0.0065  Score=48.34  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=63.2

Q ss_pred             cCCCCC-eEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC-CC--CCC
Q psy14962         13 KIQEGA-KVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG-RT--GLL   86 (216)
Q Consensus        13 ~~~~~~-~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~--~~~   86 (216)
                      .++++. +||-.|+ |. |..+..+++..+  ++|++++.+++.++.+++.    |     .+.+ +...+. ..  ...
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~l----G-----a~~~-i~~~~~~~~~~~~~  212 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVL----G-----AKEV-LAREDVMAERIRPL  212 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHT----T-----CSEE-EECC---------C
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHc----C-----CcEE-EecCCcHHHHHHHh
Confidence            366775 8999997 55 888899998864  5899999988877777542    2     1111 111111 00  011


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+.+|+|+....-. .+....+.++++|+++..
T Consensus       213 ~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          213 DKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             CSCCEEEEEECSTTT-THHHHHHTEEEEEEEEEC
T ss_pred             cCCcccEEEECCcHH-HHHHHHHhhccCCEEEEE
Confidence            234699999877653 667888999999999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.38  E-value=0.01  Score=47.45  Aligned_cols=93  Identities=15%  Similarity=0.167  Sum_probs=64.2

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CC---
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GL---   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~---   85 (216)
                      .+++|++||..|+ |. |..+..+++..  +++|++++.+++.++.+++.+   +     ..  .++  |...  ..   
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~~---g-----~~--~~~--d~~~~~~~~~~  217 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTKF---G-----FD--DAF--NYKEESDLTAA  217 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTS---C-----CS--EEE--ETTSCSCSHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc---C-----Cc--eEE--ecCCHHHHHHH
Confidence            4678999999997 43 88888888875  459999999988777665321   1     11  112  2111  11   


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 ---LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                         ...+.+|+++.+... ..+....+.|+++|++++.
T Consensus       218 ~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          218 LKRCFPNGIDIYFENVGG-KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HHHHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHhCCCCcEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence               012469999988765 4678888999999999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.33  E-value=0.0022  Score=51.52  Aligned_cols=93  Identities=20%  Similarity=0.199  Sum_probs=63.5

Q ss_pred             cCCCCCeEEEEc-CCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--C---CC
Q psy14962         13 KIQEGAKVLDIG-SGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--T---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG-~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~---~~   85 (216)
                      .+++|++||-+| +|. |..+..+++..+  ++|+++ .+++.++.+++.    |        ...+..+..  .   ..
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~~~l----G--------a~~i~~~~~~~~~~~~~  211 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYVRDL----G--------ATPIDASREPEDYAAEH  211 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHHHHH----T--------SEEEETTSCHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHHHHc----C--------CCEeccCCCHHHHHHHH
Confidence            467899999999 455 888899998864  599999 788877766543    2        111221110  0   00


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+....- ..+....++|+++|+++..-
T Consensus       212 ~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          212 TAGQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HTTSCEEEEEESSCT-HHHHHHHHHEEEEEEEEESC
T ss_pred             hcCCCceEEEECCCc-HHHHHHHHHHhcCCeEEEEc
Confidence            122469999987663 56678889999999998753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.0064  Score=48.81  Aligned_cols=95  Identities=14%  Similarity=0.074  Sum_probs=65.7

Q ss_pred             cCCCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCC--
Q psy14962         13 KIQEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLL--   86 (216)
Q Consensus        13 ~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~--   86 (216)
                      .+++|++||..|+ | .|..+..+++..  +++|++++.+++.++.+++.    +     ..  .++  |...  ...  
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~~----g-----~~--~~~--d~~~~~~~~~~  230 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRSI----G-----GE--VFI--DFTKEKDIVGA  230 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHHT----T-----CC--EEE--ETTTCSCHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHHc----C-----Cc--eEE--ecCccHhHHHH
Confidence            4678999999998 3 377888888775  45999999988877666532    2     11  122  2210  100  


Q ss_pred             ----CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         87 ----HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        87 ----~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                          ..+.+|+++.............+.|+++|+++..-.
T Consensus       231 ~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          231 VLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCC
T ss_pred             HHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeC
Confidence                012699999988876777888999999999887543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.28  E-value=0.014  Score=46.10  Aligned_cols=104  Identities=20%  Similarity=0.277  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCCchHHHH---HHHHhCCCc--EEEEEeCCH--------HHHHHHHHHHHHhCCCCCCCCC--eEEEeccC
Q psy14962         17 GAKVLDIGSGSGFMSCV---FAELVGKTG--RVFGVEHMR--------EQCEDAWETVMRIRPDLLNDGR--LHLRCRDG   81 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~---l~~~~~~~~--~v~~~D~~~--------~~~~~a~~~~~~~~~~~~~~~~--~~~~~~d~   81 (216)
                      .-+|+|+|-|+|.-...   .+...++..  +++.+|..+        +......+.+...... ....+  +++..+|+
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~-~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPE-YEGERLSLKVLLGDA  175 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSE-EECSSEEEEEEESCH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcc-ccCCcEEEEEEechH
Confidence            35799999999985433   233445554  456666422        1112222222211100 01123  45677887


Q ss_pred             CCCCC--CCCCccEEEecCCCC---------chHHHHHhcCCCCeEEEEee
Q psy14962         82 RTGLL--HQAPFDAIYLSTYVP---------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        82 ~~~~~--~~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....  ....+|+|+.++-.+         .++..+.++++|||+++-.+
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt  226 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS  226 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe
Confidence            53322  234799999976432         26689999999999997644

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.27  E-value=0.014  Score=47.59  Aligned_cols=71  Identities=20%  Similarity=0.015  Sum_probs=52.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------CCC
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------HQA   89 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~   89 (216)
                      .+|+|+.||.|.++..+.+..  -..+.++|+++...+..+.+.          .+..++++|+.....        ...
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~----------~~~~~~~~DI~~~~~~~~~~~~~~~~   70 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF----------PRSLHVQEDVSLLNAEIIKGFFKNDM   70 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC----------TTSEEECCCGGGCCHHHHHHHHCSCC
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC----------CCCceEecChhhcCHHHHHhhcccCC
Confidence            479999999999999888772  125679999999877666553          346678888764321        235


Q ss_pred             CccEEEecCCC
Q psy14962         90 PFDAIYLSTYV  100 (216)
Q Consensus        90 ~~D~i~~~~~~  100 (216)
                      .+|+|+.+.+-
T Consensus        71 ~~D~i~ggpPC   81 (376)
T 3g7u_A           71 PIDGIIGGPPC   81 (376)
T ss_dssp             CCCEEEECCCC
T ss_pred             CeeEEEecCCC
Confidence            69999988873

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.27  E-value=0.026  Score=43.45  Aligned_cols=107  Identities=18%  Similarity=0.058  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHH---h---CCCcEEEEEe-----CCHH-------------------HHHHHHHHHHHh-
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAEL---V---GKTGRVFGVE-----HMRE-------------------QCEDAWETVMRI-   64 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~---~---~~~~~v~~~D-----~~~~-------------------~~~~a~~~~~~~-   64 (216)
                      -...|+|+|+-.|..+..++..   +   ++..+++++|     +.+.                   ..+..++.+... 
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            3459999999999988776543   2   2456999999     3210                   111122211110 


Q ss_pred             CCC--CCCCCCeEEEeccCCCCCC------CCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962         65 RPD--LLNDGRLHLRCRDGRTGLL------HQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        65 ~~~--~~~~~~~~~~~~d~~~~~~------~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +..  ....+++.++.+++.....      +..++|+|+.+.....    .++.+...|+|||++++...
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCC
Confidence            000  1113789999999864332      2357999999987632    35778899999999999654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.25  E-value=0.018  Score=45.88  Aligned_cols=93  Identities=22%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             cCCCCCeEEEEcC--CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGS--GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----   85 (216)
                      .++++++||..|+  |.|..+..+++..  +++|++++.+++.++.+++.    +      ... ++  |.....     
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~~----g------~~~-~~--d~~~~~~~~~i  206 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARKL----G------CHH-TI--NYSTQDFAEVV  206 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----T------CSE-EE--ETTTSCHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----C------CCE-EE--ECCCHHHHHHH
Confidence            4678999999995  4488888888875  45999999999887777542    2      111 11  211110     


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 ---LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .....+|+++.+.+. .......++|+++|+++..-
T Consensus       207 ~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          207 REITGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             HHHHTTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEECC
T ss_pred             HHHhCCCCCeEEEECCcH-HHHHHHHHhhccCCEEEEEe
Confidence               112369999988776 66688889999999988754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.13  E-value=0.0098  Score=49.49  Aligned_cols=96  Identities=15%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe--ccCCCC----
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC--RDGRTG----   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~d~~~~----   84 (216)
                      .+++|++||-.|+ |. |..+..+++..  ++++++++.+++.++.+++.    |     ...+ +..  .|....    
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~l----G-----a~~~-i~~~~~~~~~~~~~~  284 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRAL----G-----CDLV-INRAELGITDDIADD  284 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CCCE-EEHHHHTCCTTGGGC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----C-----CCEE-Eeccccccccccccc
Confidence            4788999999998 55 88888888885  45999999999888777542    2     1221 111  111000    


Q ss_pred             --------------C--CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 --------------L--LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 --------------~--~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                                    .  .....+|+|+..... ..+....+.|+++|+++..-
T Consensus       285 ~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          285 PRRVVETGRKLAKLVVEKAGREPDIVFEHTGR-VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSEEEECSCH-HHHHHHHHHSCTTCEEEESC
T ss_pred             ccccchhhhHHHHHHHHHhCCCceEEEECCCc-hHHHHHHHHHhcCCEEEEEe
Confidence                          0  013469999987765 35677888999999998854

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.10  E-value=0.033  Score=45.15  Aligned_cols=93  Identities=11%  Similarity=-0.000  Sum_probs=63.0

Q ss_pred             CCCCeEEEEcC-C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--CC
Q psy14962         15 QEGAKVLDIGS-G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--LH   87 (216)
Q Consensus        15 ~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--~~   87 (216)
                      .+|.+||-.|+ | .|..+..+++..+  ++|+++. +++.++.+++.    |     .+  .++...-..   ..  ..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~l----G-----a~--~vi~~~~~~~~~~v~~~t  228 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKSR----G-----AE--EVFDYRAPNLAQTIRTYT  228 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHHT----T-----CS--EEEETTSTTHHHHHHHHT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHHc----C-----Cc--EEEECCCchHHHHHHHHc
Confidence            78999999999 4 3899999999864  5888885 77776666542    2     11  122211110   00  11


Q ss_pred             CCCccEEEecCCCCchHHHHHhcC-CCCeEEEEee
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQL-KPGGRLVCGV  121 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~lv~~~  121 (216)
                      .+.+|+|+-.......+....+.| +++|+++..-
T Consensus       229 ~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          229 KNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             TTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESS
T ss_pred             cCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEe
Confidence            245999998888777778888888 6999998753

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.05  E-value=0.013  Score=47.22  Aligned_cols=93  Identities=19%  Similarity=0.193  Sum_probs=63.1

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----   85 (216)
                      .+++|++||..|+ |. |..+..+++..  +++|++++.+++.++.+++.    +     ..  .++  |.....     
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g-----a~--~~~--d~~~~~~~~~~  231 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQN----G-----AH--EVF--NHREVNYIDKI  231 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CS--EEE--ETTSTTHHHHH
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHHc----C-----CC--EEE--eCCCchHHHHH
Confidence            4678999999997 43 77888888875  45999999999887765432    2     11  122  211110     


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 ---LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .....+|+++.+.+.. .+....++|+++|+++..-
T Consensus       232 ~~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          232 KKYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HHHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECC
T ss_pred             HHHcCCCCcEEEEECCChH-HHHHHHHhccCCCEEEEEe
Confidence               1123699999876643 4567789999999998754

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.04  E-value=0.0089  Score=48.26  Aligned_cols=94  Identities=16%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-----CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-----TGL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~   85 (216)
                      .+++|++||-+|+|. |..+..+++.. +  ++|+++|.+++.++.+++.    |     .+.  ++...-.     ...
T Consensus       183 ~~~~g~~VlV~GaG~vG~~avqlak~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~~--vi~~~~~~~~~v~~~  249 (359)
T 1h2b_A          183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERL----G-----ADH--VVDARRDPVKQVMEL  249 (359)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHT----T-----CSE--EEETTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHh----C-----CCE--EEeccchHHHHHHHH
Confidence            478999999999977 88888889887 5  4899999999888777642    1     111  2211100     001


Q ss_pred             CCCCCccEEEecCCCCc--hHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPE--IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~--~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+-..+...  .+....+.  ++|+++..-
T Consensus       250 ~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          250 TRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             TTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECC
T ss_pred             hCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEe
Confidence            11236999998877664  55555666  899988753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.00  E-value=0.017  Score=45.94  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=62.8

Q ss_pred             cCCCCCeEEEEcC--CCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC--
Q psy14962         13 KIQEGAKVLDIGS--GSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~--G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~--   85 (216)
                      .+.+|++||..|+  |.|..+..+++..  +++|+++|.+++.++.+++.    +     . ...+...+...   ..  
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~~----g-----~-~~~~d~~~~~~~~~~~~~  209 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQI----G-----F-DAAFNYKTVNSLEEALKK  209 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----C-SEEEETTSCSCHHHHHHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhc----C-----C-cEEEecCCHHHHHHHHHH
Confidence            4678999999998  3377777777775  45999999998887766321    1     1 11111111010   00  


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+.+|+++.+.+.. .+....+.|+++|++++.-
T Consensus       210 ~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          210 ASPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECC
T ss_pred             HhCCCCeEEEECCChH-HHHHHHHHHhcCCEEEEEe
Confidence            0124699999887753 4677889999999998753

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.80  E-value=0.0094  Score=47.96  Aligned_cols=72  Identities=21%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCCccEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAPFDAI   94 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~i   94 (216)
                      .+|+|+.||.|.++..+......-..|.++|+++.+++..+.+..          +..++.+|+......   ...+|++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~----------~~~~~~~Di~~~~~~~~~~~~~D~l   72 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc----------ccccccCCHHHccHhHcCcCCcCEE
Confidence            579999999999999988762101268999999998888777642          344677887643311   1158999


Q ss_pred             EecCC
Q psy14962         95 YLSTY   99 (216)
Q Consensus        95 ~~~~~   99 (216)
                      +.+.+
T Consensus        73 ~~gpP   77 (343)
T 1g55_A           73 LMSPP   77 (343)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98887

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.79  E-value=0.027  Score=44.95  Aligned_cols=70  Identities=14%  Similarity=0.001  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccEEE
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDAIY   95 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~i~   95 (216)
                      +.+|+|+.||.|.++..+.+. | -..+.++|+++...+..+.+...        . .   .+|+..... .-..+|+++
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~~--------~-~---~~Di~~~~~~~~~~~D~l~   76 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGE--------K-P---EGDITQVNEKTIPDHDILC   76 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSC--------C-C---BSCGGGSCGGGSCCCSEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcCC--------C-C---cCCHHHcCHhhCCCCCEEE
Confidence            568999999999999988776 2 22578899999988877776532        1 1   566553321 113589999


Q ss_pred             ecCCC
Q psy14962         96 LSTYV  100 (216)
Q Consensus        96 ~~~~~  100 (216)
                      .+.+.
T Consensus        77 ~gpPC   81 (327)
T 2c7p_A           77 AGFPC   81 (327)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            87764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.67  E-value=0.011  Score=48.30  Aligned_cols=95  Identities=24%  Similarity=0.287  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ++.+|+-+|+|. |......++..+  .+|+++|.+++.++.+.+.+.         ..+.....+.......-..+|+|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g---------~~~~~~~~~~~~l~~~l~~aDvV  235 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFC---------GRIHTRYSSAYELEGAVKRADLV  235 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTT---------TSSEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcC---------CeeEeccCCHHHHHHHHcCCCEE
Confidence            578999999977 666666676654  499999999988776654321         11211111100000001247999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.....+.      +.+...+.++|||+++-..
T Consensus       236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            88554332      2477788999999987654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=95.64  E-value=0.028  Score=47.38  Aligned_cols=89  Identities=19%  Similarity=0.051  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         14 IQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      ..+|.+|+-+|+|. |......++..+  .+|+++|.++..++.+.+.    |        ..+.  +.... .  ...|
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~~----G--------a~~~--~l~e~-l--~~aD  331 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMME----G--------FDVV--TVEEA-I--GDAD  331 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT----T--------CEEC--CHHHH-G--GGCS
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C--------CEEe--cHHHH-H--hCCC
Confidence            46799999999988 777777777654  5999999999876665432    2        2221  21111 1  3479


Q ss_pred             EEEecCCCCchHH-HHHhcCCCCeEEEEee
Q psy14962         93 AIYLSTYVPEIPY-SILLQLKPGGRLVCGV  121 (216)
Q Consensus        93 ~i~~~~~~~~~~~-~~~~~L~~gG~lv~~~  121 (216)
                      +|+...+...++. ...+.+|+||+++..-
T Consensus       332 vVi~atgt~~~i~~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          332 IVVTATGNKDIIMLEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             EEEECSSSSCSBCHHHHHHSCTTCEEEECS
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCcEEEEeC
Confidence            9998877666554 7788899999987653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=95.63  E-value=0.014  Score=47.03  Aligned_cols=95  Identities=12%  Similarity=0.061  Sum_probs=60.1

Q ss_pred             cCCCC-CeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHHhCCCCCCCCCeEEEe------c
Q psy14962         13 KIQEG-AKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQ----CEDAWETVMRIRPDLLNDGRLHLRC------R   79 (216)
Q Consensus        13 ~~~~~-~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~------~   79 (216)
                      .+++| ++||-.|+ |. |..+..+++..+  ++++++..+++.    .+.++    +.|     .+.  ++.      .
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~----~lG-----a~~--vi~~~~~~~~  229 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLK----ELG-----ATQ--VITEDQNNSR  229 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHH----HHT-----CSE--EEEHHHHHCG
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHH----hcC-----CeE--EEecCccchH
Confidence            46789 99999997 65 889999999874  488777644432    33332    222     121  221      1


Q ss_pred             cCCCCCC-----CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         80 DGRTGLL-----HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        80 d~~~~~~-----~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      |......     ....+|+|+-..+..... ...++|+++|+++..-
T Consensus       230 ~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          230 EFGPTIKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             GGHHHHHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEECC
T ss_pred             HHHHHHHHHhhccCCCceEEEECCCchhHH-HHHHHhccCCEEEEec
Confidence            1111110     134699999877765555 6779999999998753

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.62  E-value=0.018  Score=46.56  Aligned_cols=97  Identities=21%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      +.+|+-+|+|. |......++..+  ++|+++|.+++.++.+.+....         .+.....+.......-..+|+|+
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLI  235 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc---------eeEeeeCCHHHHHHHHcCCCEEE
Confidence            48999999977 666777777754  4999999999888777655432         22222111000000012589998


Q ss_pred             ecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...+.+.      +.+...+.+++||.++-....+
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence            7765543      2467778999999888765443

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=95.53  E-value=0.077  Score=42.65  Aligned_cols=94  Identities=16%  Similarity=0.125  Sum_probs=57.3

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEE-eCCHH---HHHHHHHHHHHhCCCCCCCCCeEEEec------c
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGV-EHMRE---QCEDAWETVMRIRPDLLNDGRLHLRCR------D   80 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~-D~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~------d   80 (216)
                      .+++|++||-.|+ |. |..+..+++..+  ++++++ +.++.   ..+.++    +.|     .+.  ++..      +
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~----~lG-----a~~--vi~~~~~~~~~  230 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDIQKLSDRLK----SLG-----AEH--VITEEELRRPE  230 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCHHHHHHHHH----HTT-----CSE--EEEHHHHHSGG
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccchHHHHHHHH----hcC-----CcE--EEecCcchHHH
Confidence            4789999999997 55 889999999874  466554 54432   233333    322     122  2211      1


Q ss_pred             CCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         81 GRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        81 ~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ........+.+|+|+-...-... ....++|+++|+++..
T Consensus       231 ~~~~~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          231 MKNFFKDMPQPRLALNCVGGKSS-TELLRQLARGGTMVTY  269 (357)
T ss_dssp             GGGTTSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred             HHHHHhCCCCceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence            11111111248999987665444 4578999999999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.26  E-value=0.15  Score=34.94  Aligned_cols=94  Identities=11%  Similarity=-0.004  Sum_probs=59.6

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCc
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPF   91 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~   91 (216)
                      ..+|+-+|+|. |......+...  +..|+++|.+++.++.+++            ..+.++.+|......    .-..+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~~~~l~~a~i~~a   72 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE------------RGVRAVLGNAANEEIMQLAHLECA   72 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH------------TTCEEEESCTTSHHHHHHTTGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH------------cCCCEEECCCCCHHHHHhcCcccC
Confidence            46899999876 54444333332  4599999999998776653            236678888753210    12468


Q ss_pred             cEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++++..+-..   ......+.+.|+..++.....+
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~  108 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYD  108 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSH
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            99987766543   1233456667888877765544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.10  E-value=0.052  Score=43.61  Aligned_cols=93  Identities=15%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             cCCCC--CeEEEEcC-CC-chHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--
Q psy14962         13 KIQEG--AKVLDIGS-GS-GFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--   85 (216)
Q Consensus        13 ~~~~~--~~vldiG~-G~-G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--   85 (216)
                      .+++|  .+||-.|+ |. |..+..+++..  ++ +|++++.+++.++.+++.+   +     .. . ++  |.....  
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~~---g-----~~-~-~~--d~~~~~~~  220 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSEL---G-----FD-A-AI--NYKKDNVA  220 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTS---C-----CS-E-EE--ETTTSCHH
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc---C-----Cc-e-EE--ecCchHHH
Confidence            46789  99999998 33 77777777774  56 9999999987776665421   1     11 1 11  211110  


Q ss_pred             -----CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 -----LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -----~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                           ...+.+|+++.+... ..+....++|+++|+++..
T Consensus       221 ~~~~~~~~~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          221 EQLRESCPAGVDVYFDNVGG-NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             HHHHHHCTTCEEEEEESCCH-HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCEEEECCCH-HHHHHHHHHhccCcEEEEE
Confidence                 011269999987774 5667888999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=94.97  E-value=0.12  Score=40.37  Aligned_cols=92  Identities=12%  Similarity=0.051  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~   93 (216)
                      .|.+|+-+|+|. |......++..+  .+|++.|.++...+.+.    ..+        +.+.. .+... .  -...|+
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~----~~g--------~~~~~~~~l~~-~--l~~aDv  216 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIA----EMG--------MEPFHISKAAQ-E--LRDVDV  216 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTT--------SEEEEGGGHHH-H--TTTCSE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHH----HCC--------CeecChhhHHH-H--hcCCCE
Confidence            688999999877 655555555543  49999999987554332    211        22221 11111 1  135899


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+...+..-+.....+.++||++++-....+
T Consensus       217 Vi~~~p~~~i~~~~l~~mk~~~~lin~ar~~  247 (293)
T 3d4o_A          217 CINTIPALVVTANVLAEMPSHTFVIDLASKP  247 (293)
T ss_dssp             EEECCSSCCBCHHHHHHSCTTCEEEECSSTT
T ss_pred             EEECCChHHhCHHHHHhcCCCCEEEEecCCC
Confidence            9998887555566777899999887655443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.83  E-value=0.029  Score=45.48  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ++.+|+-+|+|. |......++..  +++|+++|.+++.++.+.+..   +      ..+.....+.......-..+|+|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g------~~~~~~~~~~~~l~~~~~~~DvV  233 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---G------GRVITLTATEANIKKSVQHADLL  233 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---T------TSEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---C------ceEEEecCCHHHHHHHHhCCCEE
Confidence            468999999966 65555566654  459999999998776655432   1      12222111110000001247999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~  121 (216)
                      +...+...      +.+...+.+++||.++...
T Consensus       234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            98776543      2477788899999887654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.66  E-value=0.17  Score=39.69  Aligned_cols=92  Identities=12%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCCCCCCCccE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGLLHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~D~   93 (216)
                      .+.+|+-+|+|. |......++..  +.+|++.|.+++..+.+.+    .+        +.... .+....   -...|+
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~----~g--------~~~~~~~~l~~~---l~~aDv  218 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITE----MG--------LVPFHTDELKEH---VKDIDI  218 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TT--------CEEEEGGGHHHH---STTCSE
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CC--------CeEEchhhHHHH---hhCCCE
Confidence            578999999977 55555555554  4599999998865443322    11        22221 121111   135799


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+...+.+-+.+...+.++||++++-....+
T Consensus       219 Vi~~~p~~~i~~~~~~~mk~g~~lin~a~g~  249 (300)
T 2rir_A          219 CINTIPSMILNQTVLSSMTPKTLILDLASRP  249 (300)
T ss_dssp             EEECCSSCCBCHHHHTTSCTTCEEEECSSTT
T ss_pred             EEECCChhhhCHHHHHhCCCCCEEEEEeCCC
Confidence            9998887655566778899999887655444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.65  E-value=0.33  Score=34.74  Aligned_cols=94  Identities=14%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---C--CCCC
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---L--HQAP   90 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~--~~~~   90 (216)
                      +.+|+-+|+|. |......+...+ +..|+++|.+++.++.+++            ..+.++.+|.....   .  .-..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~------------~g~~~~~gd~~~~~~l~~~~~~~~  105 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRS------------EGRNVISGDATDPDFWERILDTGH  105 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHH------------TTCCEEECCTTCHHHHHTBCSCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHH------------CCCCEEEcCCCCHHHHHhccCCCC
Confidence            56899998865 444433333320 3489999999987765542            12456666654210   1  1245


Q ss_pred             ccEEEecCCCCchH---HHHHhcCCCCeEEEEeecC
Q psy14962         91 FDAIYLSTYVPEIP---YSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        91 ~D~i~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~  123 (216)
                      +|+|++..+-....   ....+.+.|+..++.....
T Consensus       106 ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          106 VKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            89999866543322   2344556677777765443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.60  E-value=0.17  Score=41.57  Aligned_cols=94  Identities=19%  Similarity=0.250  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC------C--CCCC
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG------R--TGLL   86 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~------~--~~~~   86 (216)
                      ++.+|+-+|+|. |.....+++.+|  ++|+++|.++..++.+.+.    |        .++...+.      .  ....
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~~----G--------~~~~~~~~~~~~d~~~~~~ya  254 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVASL----G--------AKFIAVEDEEFKAAETAGGYA  254 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHHT----T--------CEECCCCC-------------
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHc----C--------Cceeecccccccccccccchh
Confidence            568999999998 777777888764  5999999999887776542    1        12221110      0  0000


Q ss_pred             ---------------C--CCCccEEEecCCCC-----c-hHHHHHhcCCCCeEEEEeecC
Q psy14962         87 ---------------H--QAPFDAIYLSTYVP-----E-IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        87 ---------------~--~~~~D~i~~~~~~~-----~-~~~~~~~~L~~gG~lv~~~~~  123 (216)
                                     .  -...|+|+.....+     . +.+.+.+.+|||+.++=....
T Consensus       255 ~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d  314 (405)
T 4dio_A          255 KEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVE  314 (405)
T ss_dssp             ----CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGG
T ss_pred             hhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCC
Confidence                           0  03579998764332     2 448899999999998876543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.53  E-value=0.066  Score=42.85  Aligned_cols=93  Identities=14%  Similarity=0.004  Sum_probs=59.7

Q ss_pred             CCC-CeEEEE-cCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         15 QEG-AKVLDI-GSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        15 ~~~-~~vldi-G~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .++ .+||-. |+|. |..+..+++..+  ++|++++.+++.++.+++.    |     .+  .++..+-....      
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~~----G-----a~--~~~~~~~~~~~~~v~~~  228 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKDI----G-----AA--HVLNEKAPDFEATLREV  228 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHHH----T-----CS--EEEETTSTTHHHHHHHH
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C-----CC--EEEECCcHHHHHHHHHH
Confidence            345 566654 5555 788888888874  5999999999888877643    2     11  12221111000      


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+.......+ ....++|+++|+++..-
T Consensus       229 ~~~~g~D~vid~~g~~~~-~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          229 MKAEQPRIFLDAVTGPLA-SAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             HHHHCCCEEEESSCHHHH-HHHHHHSCTTCEEEECC
T ss_pred             hcCCCCcEEEECCCChhH-HHHHhhhcCCCEEEEEe
Confidence            001369999987765544 67889999999998853

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=94.36  E-value=0.04  Score=44.18  Aligned_cols=94  Identities=21%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC--CCC--C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR--TGL--L   86 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~--~~~--~   86 (216)
                      .+++|++||-.|+ |. |..+..+++..+ +..|++++ +++..+.++     .+     .+  .++..+..  ...  .
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~g-----a~--~~~~~~~~~~~~~~~~  204 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DS-----VT--HLFDRNADYVQEVKRI  204 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GG-----SS--EEEETTSCHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cC-----Cc--EEEcCCccHHHHHHHh
Confidence            4689999999998 44 778888887753 35899988 444444433     12     11  12221110  000  1


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ..+.+|+|+-...-..+ ....++|+++|++++.-
T Consensus       205 ~~~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          205 SAEGVDIVLDCLCGDNT-GKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             CTTCEEEEEEECC--------CTTEEEEEEEEEEC
T ss_pred             cCCCceEEEECCCchhH-HHHHHHhhcCCEEEEEC
Confidence            13569999977665544 67889999999998753

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.29  E-value=0.091  Score=41.25  Aligned_cols=74  Identities=16%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC----CC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH----QA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~   89 (216)
                      ..+.+|+|+.||.|.++..+.+. |-... |.++|+++...+.-+.+.          ....+..+|+......    .+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~----------~~~~~~~~DI~~i~~~~i~~~~   82 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH----------QGKIMYVGDVRSVTQKHIQEWG   82 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT----------TTCEEEECCGGGCCHHHHHHTC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC----------CCCceeCCChHHccHHHhcccC
Confidence            45668999999999999887765 22222 589999998776555442          2345677887643211    13


Q ss_pred             CccEEEecCC
Q psy14962         90 PFDAIYLSTY   99 (216)
Q Consensus        90 ~~D~i~~~~~   99 (216)
                      .+|+++.+.+
T Consensus        83 ~~Dll~ggpP   92 (295)
T 2qrv_A           83 PFDLVIGGSP   92 (295)
T ss_dssp             CCSEEEECCC
T ss_pred             CcCEEEecCC
Confidence            6899987655

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=94.12  E-value=0.17  Score=41.80  Aligned_cols=88  Identities=16%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|.+|+-+|+|. |......++.+  +.+|+++|.++.....+..            ....+.  +....   -...|+
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~------------~G~~v~--~Leea---l~~ADI  278 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACM------------DGFRLV--KLNEV---IRQVDI  278 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH------------TTCEEC--CHHHH---TTTCSE
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHH------------cCCEec--cHHHH---HhcCCE
Confidence            4789999999998 77777777765  4599999999865443321            112221  21111   124699


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~  121 (216)
                      |+......+++ ....+.+|+|++++-.-
T Consensus       279 Vi~atgt~~lI~~e~l~~MK~gailINvg  307 (435)
T 3gvp_A          279 VITCTGNKNVVTREHLDRMKNSCIVCNMG  307 (435)
T ss_dssp             EEECSSCSCSBCHHHHHHSCTTEEEEECS
T ss_pred             EEECCCCcccCCHHHHHhcCCCcEEEEec
Confidence            98865555554 47888999998876653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.06  E-value=0.067  Score=43.52  Aligned_cols=95  Identities=22%  Similarity=0.333  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc----CCCCC-----
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD----GRTGL-----   85 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d----~~~~~-----   85 (216)
                      ++.+|+-+|+|. |......++..|  ++|+++|.++..++.+.+.    |        .+++..+    .....     
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~l----G--------a~~~~l~~~~~~~~gya~~~~  248 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRSV----G--------AQWLDLGIDAAGEGGYARELS  248 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHHT----T--------CEECCCC-------------C
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----C--------CeEEeccccccccccchhhhh
Confidence            578999999998 777777787775  4999999999877776542    1        1222111    00000     


Q ss_pred             ----------C--CCCCccEEEecCCCC-----c-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 ----------L--HQAPFDAIYLSTYVP-----E-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ----------~--~~~~~D~i~~~~~~~-----~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                                .  .-...|+|+.....+     . +.+.+.+.+|||+.++=....+
T Consensus       249 ~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~  305 (381)
T 3p2y_A          249 EAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGET  305 (381)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             HHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCC
Confidence                      0  014689999764222     2 3488999999999887654433

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=93.98  E-value=0.037  Score=48.67  Aligned_cols=105  Identities=18%  Similarity=0.178  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh------CCC-----cEEEEEeC---CHHHHHHHH-----------HHHHHhCCCC--
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV------GKT-----GRVFGVEH---MREQCEDAW-----------ETVMRIRPDL--   68 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~------~~~-----~~v~~~D~---~~~~~~~a~-----------~~~~~~~~~~--   68 (216)
                      +.-+|+|+|.|+|+....+.+..      +|.     .+++++|.   +.+.+..+-           +.+..+....  
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34589999999999776665532      111     37899998   444444322           2222211000  


Q ss_pred             -----C--CCCCeEEEeccCCCCCCC-----CCCccEEEecCCCC---------chHHHHHhcCCCCeEEEEe
Q psy14962         69 -----L--NDGRLHLRCRDGRTGLLH-----QAPFDAIYLSTYVP---------EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        69 -----~--~~~~~~~~~~d~~~~~~~-----~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~lv~~  120 (216)
                           +  +...+++..+|+......     .+.+|+++.+.-.+         .++..+.++++|||++...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                 0  012456677776532221     36799999976542         2568899999999987653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=93.88  E-value=0.15  Score=44.59  Aligned_cols=104  Identities=18%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh------CC-----CcEEEEEeC---CHHHHHHHHH-----------HHHHhCCCCCC-
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV------GK-----TGRVFGVEH---MREQCEDAWE-----------TVMRIRPDLLN-   70 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~---~~~~~~~a~~-----------~~~~~~~~~~~-   70 (216)
                      .-+|+|+|-|+|.......+..      +|     ..+++++|.   +++.+..+-.           ....+.. .+. 
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~  145 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPM-PLPG  145 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCC-CCSE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcc-cCCC
Confidence            3589999999998776654432      11     136899998   7776653322           2222211 000 


Q ss_pred             ---------CCCeEEEeccCCCCCC-----CCCCccEEEecCCCC---------chHHHHHhcCCCCeEEEEee
Q psy14962         71 ---------DGRLHLRCRDGRTGLL-----HQAPFDAIYLSTYVP---------EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        71 ---------~~~~~~~~~d~~~~~~-----~~~~~D~i~~~~~~~---------~~~~~~~~~L~~gG~lv~~~  121 (216)
                               ...+++..+|+.....     ....||+++.+.-.+         .++..+.++++|||++....
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                     0223455566542221     135799999976542         25688999999999987543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.73  E-value=0.069  Score=43.87  Aligned_cols=93  Identities=20%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------------
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------------   82 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------------   82 (216)
                      ++.+|+-+|+|. |..+..+++.++  +.|+++|.++..++.+.+.    +        ..+...+..            
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~l----G--------a~~~~~~~~~~~~~~~g~~~~  236 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSM----G--------AEFLELDFKEEAGSGDGYAKV  236 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHHT----T--------CEECCC--------CCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHc----C--------CEEEEecccccccccccchhh
Confidence            578999999988 777777887764  5899999999877665331    1        222211110            


Q ss_pred             --C--------CCC-CCCCccEEEecCCCC-----ch-HHHHHhcCCCCeEEEEeec
Q psy14962         83 --T--------GLL-HQAPFDAIYLSTYVP-----EI-PYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 --~--------~~~-~~~~~D~i~~~~~~~-----~~-~~~~~~~L~~gG~lv~~~~  122 (216)
                        .        ... .-...|+|+.....+     .+ .+.+.+.++|||+++-...
T Consensus       237 ~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~  293 (401)
T 1x13_A          237 MSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAA  293 (401)
T ss_dssp             HSHHHHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             ccHHHHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcC
Confidence              0        000 002479999874232     33 3678888999999887653

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.70  E-value=0.099  Score=41.78  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCCccE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKT-GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAPFDA   93 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~   93 (216)
                      .+++|+.||.|.++..+.+. +.. .-|.++|+++...+.-+.+..          ...+...|+......   ...+|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~~DI~~~~~~~~~~~~~D~   72 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP----------ETNLLNRNIQQLTPQVIKKWNVDT   72 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECCCGGGCCHHHHHHTTCCE
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC----------CCceeccccccCCHHHhccCCCCE
Confidence            47999999999999888776 222 247899999987766655532          234667776543221   125899


Q ss_pred             EEecCCC
Q psy14962         94 IYLSTYV  100 (216)
Q Consensus        94 i~~~~~~  100 (216)
                      ++.+.+-
T Consensus        73 l~ggpPC   79 (333)
T 4h0n_A           73 ILMSPPC   79 (333)
T ss_dssp             EEECCCC
T ss_pred             EEecCCC
Confidence            9877663

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.65  E-value=0.11  Score=42.25  Aligned_cols=92  Identities=18%  Similarity=0.249  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC------------
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR------------   82 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~------------   82 (216)
                      ++.+|+-+|+|. |.....+++.++  ++|+++|.++...+.+++ +   +        ..+...+..            
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~-~---G--------a~~~~i~~~~~~~~~~~~~~~  236 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES-L---G--------GKFITVDDEAMKTAETAGGYA  236 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH-T---T--------CEECCC---------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---C--------CeEEeecccccccccccccch
Confidence            688999999988 777778888765  489999999876666543 1   1        111100000            


Q ss_pred             ---C-C--------CC-CCCCccEEEecCCC-----Cch-HHHHHhcCCCCeEEEEee
Q psy14962         83 ---T-G--------LL-HQAPFDAIYLSTYV-----PEI-PYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        83 ---~-~--------~~-~~~~~D~i~~~~~~-----~~~-~~~~~~~L~~gG~lv~~~  121 (216)
                         . .        .. .-..+|+|+.....     +.+ .....+.++|||+++-..
T Consensus       237 ~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          237 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             hhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence               0 0        00 01358999977622     223 377888899999987754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.63  E-value=1  Score=34.12  Aligned_cols=80  Identities=10%  Similarity=-0.002  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCc-hHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSG-FMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G-~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .+.++|-.|++.+ .++..+++.+ ..+.+|+.++.++...+.+.+.....+     ..++.++.+|+.+...       
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-----RNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-----SCCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-----CCCceEEeCCCCCHHHHHHHHHH
Confidence            4678888887632 2333333332 125699999988766665555544422     2368899999864321       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+.+|+++.+...
T Consensus        81 ~~~~~g~id~li~~Ag~   97 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCeeEEEEcccc
Confidence               01468999877653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.59  E-value=0.19  Score=39.75  Aligned_cols=68  Identities=13%  Similarity=-0.049  Sum_probs=47.1

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEEe
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~   96 (216)
                      +|+|+.||.|.++.-+-+.   +. -+.++|+++...+.-+.+.           .-.++.+|....... -..+|+++.
T Consensus         2 kvidLFsG~GG~~~G~~~a---G~~~v~a~e~d~~a~~ty~~N~-----------~~~~~~~DI~~i~~~~~~~~D~l~g   67 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH-----------SAKLIKGDISKISSDEFPKCDGIIG   67 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT---TCEEEEEEECCTTTHHHHHHHC-----------CSEEEESCGGGCCGGGSCCCSEEEC
T ss_pred             eEEEeCcCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC-----------CCCcccCChhhCCHhhCCcccEEEe
Confidence            7999999999998887665   33 4678999998766554442           235677887643321 245899987


Q ss_pred             cCCC
Q psy14962         97 STYV  100 (216)
Q Consensus        97 ~~~~  100 (216)
                      +.+-
T Consensus        68 gpPC   71 (331)
T 3ubt_Y           68 GPPS   71 (331)
T ss_dssp             CCCG
T ss_pred             cCCC
Confidence            7663

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.41  E-value=0.73  Score=35.01  Aligned_cols=80  Identities=11%  Similarity=0.090  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCc-hHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSG-FMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G-~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .|+++|--|++++ .++..+++.+. .+++|+.++.+++.++.+.+.+.+.+     ..++.++..|+.+...       
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-----QPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-----CSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCcEEEEEccCCCHHHHHHHHHH
Confidence            5888999997431 23333333221 26799999999988888777766533     3578888899763211       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        80 ~~~~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAF   96 (256)
T ss_dssp             HHHHHCCCSEEEECCCC
T ss_pred             HHHHhCCCCEEEecccc
Confidence               12678999877653

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=93.25  E-value=0.042  Score=38.65  Aligned_cols=95  Identities=18%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-----CCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-----QAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~   90 (216)
                      ...-|+|+|-|+|..=.++.+.+ |+..|+++|-.-..      +- .     -.++.-+++.+|+.+....     ..+
T Consensus        40 ~~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR~~~~------hp-~-----~~P~~e~~ilGdi~~tL~~~~~r~g~~  106 (174)
T 3iht_A           40 LSGPVYELGLGNGRTYHHLRQHV-QGREIYVFERAVAS------HP-D-----STPPEAQLILGDIRETLPATLERFGAT  106 (174)
T ss_dssp             CCSCEEEECCTTCHHHHHHHHHC-CSSCEEEEESSCCC------CG-G-----GCCCGGGEEESCHHHHHHHHHHHHCSC
T ss_pred             CCCceEEecCCCChhHHHHHHhC-CCCcEEEEEeeecc------CC-C-----CCCchHheecccHHHHHHHHHHhcCCc
Confidence            34589999999999988988887 56799999832110      00 0     0122334555554432211     223


Q ss_pred             ccEEEecCCCC----------chHHHHHhcCCCCeEEEEeecC
Q psy14962         91 FDAIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        91 ~D~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .-++.++.+..          ++...+..+|.|||+++-..+-
T Consensus       107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            33344443332          2446777899999999875443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.99  E-value=0.89  Score=30.81  Aligned_cols=93  Identities=14%  Similarity=0.101  Sum_probs=54.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPF   91 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~   91 (216)
                      ..+|+-+|+|.  ++..+++.+. .+.+|+++|.+++.++.+++            ....++.+|.....    ..-..+
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~------------~~~~~~~gd~~~~~~l~~~~~~~~   71 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED------------EGFDAVIADPTDESFYRSLDLEGV   71 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEECCTTCHHHHHHSCCTTC
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH------------CCCcEEECCCCCHHHHHhCCcccC
Confidence            46899999865  4444443331 24589999999987766543            23567788875321    112458


Q ss_pred             cEEEecCCCCch---HHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPEI---PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|++..+....   .....+.+. ...++.....+
T Consensus        72 d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~~  106 (141)
T 3llv_A           72 SAVLITGSDDEFNLKILKALRSVS-DVYAIVRVSSP  106 (141)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHC-CCCEEEEESCG
T ss_pred             CEEEEecCCHHHHHHHHHHHHHhC-CceEEEEEcCh
Confidence            999887764321   223333444 55555544433

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.92  E-value=0.7  Score=34.61  Aligned_cols=95  Identities=16%  Similarity=0.078  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+.+||-+|+|. |..-...+..  .++.|+.++....  ....+....        .++.++..+......  ..+|+|
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~~~--~~l~~l~~~--------~~i~~i~~~~~~~dL--~~adLV   95 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPTVS--AEINEWEAK--------GQLRVKRKKVGEEDL--LNVFFI   95 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSSCC--HHHHHHHHT--------TSCEEECSCCCGGGS--SSCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCCCC--HHHHHHHHc--------CCcEEEECCCCHhHh--CCCCEE
Confidence            578999999986 3333333333  2457887764422  112222222        457777665543322  358999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ++....+..-..+....+ -|.++-.+..|.
T Consensus        96 IaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~  125 (223)
T 3dfz_A           96 VVATNDQAVNKFVKQHIK-NDQLVNMASSFS  125 (223)
T ss_dssp             EECCCCTHHHHHHHHHSC-TTCEEEC-----
T ss_pred             EECCCCHHHHHHHHHHHh-CCCEEEEeCCcc
Confidence            998888877777777777 788877766654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.91  E-value=0.99  Score=36.54  Aligned_cols=95  Identities=12%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+.+||.++.+.|.+++.++..     .++.+.-|--.....+.++..++++   ..++++...  ...  ..+.||+|+
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~---~~~~~~~~~--~~~--~~~~~~~v~  105 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGID---ESSVKFLDS--TAD--YPQQPGVVL  105 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCC---GGGSEEEET--TSC--CCSSCSEEE
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCC---ccceEeccc--ccc--cccCCCEEE
Confidence            5678999999999999988754     3345533555555666777776631   223444322  112  235699998


Q ss_pred             ecCCCC-----chHHHHHhcCCCCeEEEEeec
Q psy14962         96 LSTYVP-----EIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        96 ~~~~~~-----~~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ...+-.     ..+..+...|++|+.+++.-.
T Consensus       106 ~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          106 IKVPKTLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             EECCSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             EEcCCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence            876643     245788899999999977544

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=92.85  E-value=0.18  Score=40.18  Aligned_cols=72  Identities=7%  Similarity=0.028  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCc-EE-EEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCCc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTG-RV-FGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAPF   91 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~-~v-~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~   91 (216)
                      ..+++|+.||.|.++..+.+. |-.. .+ .++|+++...+.-+.+...         .  ++..|+......   ...+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~---------~--~~~~DI~~~~~~~i~~~~~   77 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE---------E--VQVKNLDSISIKQIESLNC   77 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC---------C--CBCCCTTTCCHHHHHHTCC
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC---------C--cccCChhhcCHHHhccCCC
Confidence            458999999999999888765 2112 46 6999999988777666532         1  456676543221   1258


Q ss_pred             cEEEecCCC
Q psy14962         92 DAIYLSTYV  100 (216)
Q Consensus        92 D~i~~~~~~  100 (216)
                      |+++.+.+-
T Consensus        78 Dil~ggpPC   86 (327)
T 3qv2_A           78 NTWFMSPPC   86 (327)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEecCCc
Confidence            999877663

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.78  E-value=1.3  Score=34.38  Aligned_cols=78  Identities=9%  Similarity=-0.023  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCc-hHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSG-FMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G-~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .++++|-.|++.| .++..+++.+ ..+++|+.++.++...+.+.+.....       .++.++.+|+.+...       
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL-------GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH-------TCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------CCceEEECCCCCHHHHHHHHHH
Confidence            4778999997643 2444443332 12568999998876655555544442       357888888763210       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+.+|+++.+...
T Consensus       103 ~~~~~g~iD~lVnnAG~  119 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGF  119 (293)
T ss_dssp             HHHHTSCCSEEEECCCC
T ss_pred             HHHhcCCCCEEEECCcc
Confidence               11478999987664

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.72  E-value=1.4  Score=33.68  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM------------REQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .+++||-.|++.| ++..+++.+ ..+++|+.+|.+            .+.++.+...+...+      .++.++..|+.
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG------RKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT------SCEEEEECCTT
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC------CceEEEEccCC
Confidence            4677888887654 444444333 125699999987            666666655555432      57888899976


Q ss_pred             CCCC----------CCCCccEEEecCCCCc-----------------------hHHHHHhcCCCCeEEEEe
Q psy14962         83 TGLL----------HQAPFDAIYLSTYVPE-----------------------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        83 ~~~~----------~~~~~D~i~~~~~~~~-----------------------~~~~~~~~L~~gG~lv~~  120 (216)
                      +...          ..+.+|+++.+.....                       +.+.+...++++|.++..
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence            3211          0146899998766411                       114555677778887664

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=92.66  E-value=0.41  Score=39.75  Aligned_cols=88  Identities=14%  Similarity=-0.070  Sum_probs=57.9

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|++|+-+|+|. |......++.+  +.+|++.|.++.....+.    .        ....+.  +.... .  ...|+
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~----~--------~G~~vv--~LeEl-L--~~ADI  305 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAA----M--------DGFEVV--TLDDA-A--STADI  305 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHH----H--------TTCEEC--CHHHH-G--GGCSE
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHH----h--------cCceec--cHHHH-H--hhCCE
Confidence            4789999999998 76666666665  459999999886543332    1        112222  21111 1  24699


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~  121 (216)
                      |+......+++ ....+.+|+|++++-.-
T Consensus       306 Vv~atgt~~lI~~e~l~~MK~GAILINvG  334 (464)
T 3n58_A          306 VVTTTGNKDVITIDHMRKMKDMCIVGNIG  334 (464)
T ss_dssp             EEECCSSSSSBCHHHHHHSCTTEEEEECS
T ss_pred             EEECCCCccccCHHHHhcCCCCeEEEEcC
Confidence            98876655554 67888899999887543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.31  E-value=0.29  Score=34.06  Aligned_cols=97  Identities=11%  Similarity=-0.029  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--C--CCC
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--L--HQA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~   89 (216)
                      .++.+|+-+|+|. |......+...  +..|+++|.+++.++.+++   .        ....++.+|.....  .  ...
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~~---~--------~g~~~~~~d~~~~~~l~~~~~~   83 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLNS---E--------FSGFTVVGDAAEFETLKECGME   83 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSCT---T--------CCSEEEESCTTSHHHHHTTTGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHh---c--------CCCcEEEecCCCHHHHHHcCcc
Confidence            4678999999866 54444444442  4589999998876543321   1        23445556643210  0  123


Q ss_pred             CccEEEecCCCCchHH---HHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYVPEIPY---SILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~---~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+|+|+...+......   .+.+.+.+...++.....+
T Consensus        84 ~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           84 KADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred             cCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence            5899998777654332   3334455556666655544

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=92.20  E-value=0.63  Score=35.59  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      +|+.+|--|++.|. +..+++.+ ..+++|+.+|.+++.++...+.+...+      .++.++.+|+.+...        
T Consensus         6 ~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g------~~~~~~~~Dvt~~~~v~~~~~~~   78 (254)
T 4fn4_A            6 KNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG------KEVLGVKADVSKKKDVEEFVRRT   78 (254)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence            47788888876653 33333332 136799999999999888888777654      578889999863221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        .-+..|+++.+...
T Consensus        79 ~~~~G~iDiLVNNAGi   94 (254)
T 4fn4_A           79 FETYSRIDVLCNNAGI   94 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCcc
Confidence              12678999987763

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.13  E-value=0.71  Score=37.59  Aligned_cols=45  Identities=18%  Similarity=0.149  Sum_probs=34.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHHH
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVG------KTGRVFGVEHMREQCEDAWETVM   62 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~   62 (216)
                      ..|+|+|+|.|.++..+++.+.      ...+++.+|+|+...+.-++.+.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            4699999999999988876542      12489999999998876555543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.08  E-value=0.8  Score=37.65  Aligned_cols=95  Identities=12%  Similarity=0.081  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCc
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPF   91 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~   91 (216)
                      +.+|+-+|+|. |......+...  +..|+++|.+++.++.+++            ..+.++.+|.....    ..-..+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~------------~g~~vi~GDat~~~~L~~agi~~A   69 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRK------------FGMKVFYGDATRMDLLESAGAAKA   69 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHH------------TTCCCEESCTTCHHHHHHTTTTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHh------------CCCeEEEcCCCCHHHHHhcCCCcc
Confidence            45799999866 44444444432  4589999999998877653            23567888876421    112468


Q ss_pred             cEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         92 DAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        92 D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+|++..+-..   ......+.+.|...++.......
T Consensus        70 ~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           70 EVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             SEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             CEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            98888766543   22445566778888888766553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.06  E-value=0.11  Score=40.76  Aligned_cols=52  Identities=29%  Similarity=0.314  Sum_probs=38.2

Q ss_pred             CCeEEEeccCCCC--CCCCCCccEEEecCCCCc--------------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         72 GRLHLRCRDGRTG--LLHQAPFDAIYLSTYVPE--------------------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        72 ~~~~~~~~d~~~~--~~~~~~~D~i~~~~~~~~--------------------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .++.++++|....  ..++++||+|+++.+...                          ++.++.++|+|||.+++.+..
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            4678999997642  234578999999998731                          235777999999999887654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.03  E-value=0.69  Score=29.97  Aligned_cols=88  Identities=15%  Similarity=0.060  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CC-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KT-GRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~   90 (216)
                      .+.+|+-+|+  |.++..+++.+. .+ .+|+++|.+++.++...    .        ..+.+...|......   .-..
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~--------~~~~~~~~d~~~~~~~~~~~~~   69 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R--------MGVATKQVDAKDEAGLAKALGG   69 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T--------TTCEEEECCTTCHHHHHHHTTT
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h--------CCCcEEEecCCCHHHHHHHHcC
Confidence            3568999998  555544443321 23 68999999987665543    2        345667777643110   0135


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEE
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRL  117 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~l  117 (216)
                      +|+|+...+.......+...++.|...
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~   96 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHY   96 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCE
Confidence            899998876554433333444444443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.60  E-value=0.9  Score=34.41  Aligned_cols=75  Identities=16%  Similarity=0.061  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++. .++..+++.+ ..+++|+.++.+++.++...+.+.         .++.++..|..+...        
T Consensus         7 ~gk~~lVTGas~-gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   76 (255)
T 4eso_A            7 QGKKAIVIGGTH-GMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGAAA   76 (255)
T ss_dssp             TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHHH
Confidence            467888888665 4444444433 125699999999887766555431         468888889763221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        77 ~~~~g~id~lv~nAg~   92 (255)
T 4eso_A           77 GQTLGAIDLLHINAGV   92 (255)
T ss_dssp             HHHHSSEEEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence              01478999887664

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.55  E-value=2.1  Score=28.55  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPF   91 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~   91 (216)
                      +.+|+-+|+|.  ++..+++.+. .+.+|+.+|.+++.++...+.           ..+.++.+|.....    ..-..+
T Consensus         4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~d~~~~~~l~~~~~~~~   70 (140)
T 1lss_A            4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----------IDALVINGDCTKIKTLEDAGIEDA   70 (140)
T ss_dssp             -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------CSSEEEESCTTSHHHHHHTTTTTC
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-----------cCcEEEEcCCCCHHHHHHcCcccC
Confidence            35788888754  4444443321 245899999998766544321           13456666653211    112358


Q ss_pred             cEEEecCCCCch---HHHHHhcCCCCeEEEEeecCC
Q psy14962         92 DAIYLSTYVPEI---PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        92 D~i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+|+...+....   ...+.+.+.++ .+++....+
T Consensus        71 d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~~  105 (140)
T 1lss_A           71 DMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISEI  105 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCC-CEEEECSST
T ss_pred             CEEEEeeCCchHHHHHHHHHHHcCCC-EEEEEecCH
Confidence            999887665432   23444556665 455544433

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=91.36  E-value=0.3  Score=49.19  Aligned_cols=99  Identities=19%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc--CCC---CC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD--GRT---GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d--~~~---~~   85 (216)
                      .+++|.+||-.|+ |. |..++.+++..  +++|++++.+++..+.+++.+...+     ...+ +-..+  +..   ..
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lg-----a~~v-~~~~~~~~~~~i~~~ 1735 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLD-----ETCF-ANSRDTSFEQHVLRH 1735 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCC-----STTE-EESSSSHHHHHHHHT
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCC-----ceEE-ecCCCHHHHHHHHHh
Confidence            4789999999975 55 88889999986  4599999999888777765432111     1221 11111  100   11


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+|+-... ...+....++|+++|+++..
T Consensus      1736 t~g~GvDvVld~~g-~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1736 TAGKGVDLVLNSLA-EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             TTSCCEEEEEECCC-HHHHHHHHTTEEEEEEEEEC
T ss_pred             cCCCCceEEEECCC-chHHHHHHHhcCCCcEEEEe
Confidence            12346999998664 56678888999999998875

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.30  E-value=1  Score=34.85  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+.+|--|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+   +      .++..+.+|+.+...        
T Consensus        28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g------~~~~~~~~Dv~~~~~v~~~~~~~   97 (273)
T 4fgs_A           28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G------GGAVGIQADSANLAELDRLYEKV   97 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C------CCeEEEEecCCCHHHHHHHHHHH
Confidence            4777888887665 333343333 23679999999998877665443   2      467788888753221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..++.|+++.+...
T Consensus        98 ~~~~G~iDiLVNNAG~  113 (273)
T 4fgs_A           98 KAEAGRIDVLFVNAGG  113 (273)
T ss_dssp             HHHHSCEEEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              12678999887764

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.16  E-value=4.7  Score=32.03  Aligned_cols=102  Identities=14%  Similarity=0.152  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhC-------CC---------CCCCCCeEEEe
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR-------PD---------LLNDGRLHLRC   78 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-------~~---------~~~~~~~~~~~   78 (216)
                      .+...|+.+|||.......+.... ++..++-+|. |+.++.-++.+...+       ..         .+...+..++.
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            355789999999999888877652 3457788887 777777766665531       00         00125788898


Q ss_pred             ccCCCC-C--------CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEE
Q psy14962         79 RDGRTG-L--------LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        79 ~d~~~~-~--------~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~  119 (216)
                      .|+... .        ...+...++++-..+..        ++..+.+.. |+|.+++
T Consensus       174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~  230 (334)
T 1rjd_A          174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWIS  230 (334)
T ss_dssp             CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEE
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEE
Confidence            998642 1        11234456666555543        334444544 6777654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.01  E-value=2.1  Score=33.06  Aligned_cols=98  Identities=13%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMRE-QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .++++|-.|++. .++..+++.+. .+++|+.++.++. ..+...+.....      ..++.++.+|+.+...       
T Consensus        46 ~gk~vlVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~  118 (291)
T 3ijr_A           46 KGKNVLITGGDS-GIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE------GVKCVLLPGDLSDEQHCKDIVQE  118 (291)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT------TCCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence            356788887654 44544544431 2569999988765 333444444432      2578888899763210       


Q ss_pred             ---CCCCccEEEecCCCCc--------------------------hHHHHHhcCCCCeEEEEe
Q psy14962         87 ---HQAPFDAIYLSTYVPE--------------------------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~~~--------------------------~~~~~~~~L~~gG~lv~~  120 (216)
                         ..+.+|+++.+.....                          +.+.+...++++|.++..
T Consensus       119 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          119 TVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence               0146899987754310                          124555677788887764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.82  E-value=2.9  Score=31.88  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM-REQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .++++|-.|++. .++..+++.+ ..+++|+.++.. .+..+...+.+...+      .++.++.+|..+...       
T Consensus        30 ~gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~  102 (271)
T 3v2g_A           30 AGKTAFVTGGSR-GIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG------GRAVAIRADNRDAEAIEQAIRE  102 (271)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC------CcEEEEECCCCCHHHHHHHHHH
Confidence            567888888765 4444444433 125688888544 455555555555433      568888888753210       


Q ss_pred             ---CCCCccEEEecCCCCc-------------------------hHHHHHhcCCCCeEEEEee
Q psy14962         87 ---HQAPFDAIYLSTYVPE-------------------------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~~~-------------------------~~~~~~~~L~~gG~lv~~~  121 (216)
                         ..+..|+++.+.....                         +.+.+...++++|.++...
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is  165 (271)
T 3v2g_A          103 TVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG  165 (271)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence               0146899998766411                         1245556777888877653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.81  E-value=2.3  Score=32.32  Aligned_cols=99  Identities=19%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEH-MREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .++++|-.|++. .++..+++.+. .+++|+.++. +++..+...+.+...+      .++.++.+|+.+...       
T Consensus        17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~   89 (270)
T 3is3_A           17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG------SDAIAIKADIRQVPEIVKLFDQ   89 (270)
T ss_dssp             TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHH
Confidence            466778777654 44444444331 2568888765 4555555555555433      578888999763221       


Q ss_pred             ---CCCCccEEEecCCCCc-------------------------hHHHHHhcCCCCeEEEEee
Q psy14962         87 ---HQAPFDAIYLSTYVPE-------------------------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~~~-------------------------~~~~~~~~L~~gG~lv~~~  121 (216)
                         ..+..|+++.+.....                         +.+.+...++++|.++...
T Consensus        90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence               0146899998766411                         1245567778888877654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.77  E-value=0.81  Score=31.62  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=57.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHM-REQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAP   90 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~   90 (216)
                      ..+|+-+|+  |..+..+++.+. .+..|+.+|.+ ++..+...+..         ...+.++.+|......    .-..
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---------~~~~~~i~gd~~~~~~l~~a~i~~   71 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---------GDNADVIPGDSNDSSVLKKAGIDR   71 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---------CTTCEEEESCTTSHHHHHHHTTTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---------cCCCeEEEcCCCCHHHHHHcChhh
Confidence            457888886  455555544331 24589999997 45443333321         1347788888753210    1246


Q ss_pred             ccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+|++......   ......+.+.|...++.....+.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             CCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            899988766543   22344556667777777665553

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=90.74  E-value=0.6  Score=38.62  Aligned_cols=88  Identities=11%  Similarity=-0.089  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|.+|.-+|.|. |......++.+  +.+|+++|.++.....+..            ....+.  +....   -...|+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~------------~G~~~~--sL~ea---l~~ADV  269 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAM------------EGYQVL--LVEDV---VEEAHI  269 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH------------TTCEEC--CHHHH---TTTCSE
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHH------------hCCeec--CHHHH---HhhCCE
Confidence            3588999999988 66666666665  4599999999865544432            112221  22111   124799


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEee
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCGV  121 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~~  121 (216)
                      |+....-..++ ....+.+|+|++++-.-
T Consensus       270 Vilt~gt~~iI~~e~l~~MK~gAIVINvg  298 (436)
T 3h9u_A          270 FVTTTGNDDIITSEHFPRMRDDAIVCNIG  298 (436)
T ss_dssp             EEECSSCSCSBCTTTGGGCCTTEEEEECS
T ss_pred             EEECCCCcCccCHHHHhhcCCCcEEEEeC
Confidence            98766555544 46677889988776543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=90.69  E-value=0.32  Score=40.85  Aligned_cols=55  Identities=22%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTG-RVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      -+++|+.||.|.++..+.+.   +. -|.++|+++...+.-+.+...       .....++..|+.
T Consensus        89 ~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~~-------~p~~~~~~~DI~  144 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHYC-------DPATHHFNEDIR  144 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSCC-------CTTTCEEESCTH
T ss_pred             ceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhccc-------CCCcceeccchh
Confidence            57999999999999888765   33 478899999876655544311       123346667764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=90.61  E-value=2.1  Score=33.15  Aligned_cols=99  Identities=13%  Similarity=0.014  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCC--HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHM--REQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------   86 (216)
                      .++++|-.|++ |.++..+++.+. .+++|+.++.+  +...+...+.....+      .++.++.+|+.+...      
T Consensus        48 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~  120 (294)
T 3r3s_A           48 KDRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG------RKAVLLPGDLSDESFARSLVH  120 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT------CCEEECCCCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC------CcEEEEEecCCCHHHHHHHHH
Confidence            35678888765 445555544432 25689998876  334444444444432      568888888753210      


Q ss_pred             ----CCCCccEEEecCCCCc--------------------------hHHHHHhcCCCCeEEEEee
Q psy14962         87 ----HQAPFDAIYLSTYVPE--------------------------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ----~~~~~D~i~~~~~~~~--------------------------~~~~~~~~L~~gG~lv~~~  121 (216)
                          ..+.+|+++.+.....                          +.+.+...++++|.++...
T Consensus       121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence                0146899988766411                          1145556778888877653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.56  E-value=2.4  Score=33.29  Aligned_cols=88  Identities=18%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+|.-||+|. |. ++..+.+. +....|++.|.+++.++.+.+.    |       -+.-...|.....  -...|+|+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~~----G-------~~~~~~~~~~~~~--~~~aDvVi   99 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL----G-------IIDEGTTSIAKVE--DFSPDFVM   99 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT----T-------SCSEEESCTTGGG--GGCCSEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHC----C-------CcchhcCCHHHHh--hccCCEEE
Confidence            5899999876 43 33333333 2112899999999887766432    2       1111222322101  13479999


Q ss_pred             ecCCCCc---hHHHHHhcCCCCeEEEE
Q psy14962         96 LSTYVPE---IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        96 ~~~~~~~---~~~~~~~~L~~gG~lv~  119 (216)
                      ..-+...   ++..+...++++..++-
T Consensus       100 lavp~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          100 LSSPVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             ECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             EeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence            8877654   44667778888876644

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=90.47  E-value=0.052  Score=48.59  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCC---C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRT---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~---~   84 (216)
                      .+++|++||-.|+ |. |..++.+++..+  ++|++++.+++ .+..+     .+     ...  ++..   |+..   .
T Consensus       342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~k-~~~l~-----lg-----a~~--v~~~~~~~~~~~i~~  406 (795)
T 3slk_A          342 GLRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASEDK-WQAVE-----LS-----REH--LASSRTCDFEQQFLG  406 (795)
T ss_dssp             CCCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGGG-GGGSC-----SC-----GGG--EECSSSSTHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChHH-hhhhh-----cC-----hhh--eeecCChhHHHHHHH
Confidence            4678999999995 55 899999999864  58999885442 11111     11     111  1111   1100   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ......+|+|+-...- ..+....++|+++|+++..-
T Consensus       407 ~t~g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~v~iG  442 (795)
T 3slk_A          407 ATGGRGVDVVLNSLAG-EFADASLRMLPRGGRFLELG  442 (795)
T ss_dssp             HSCSSCCSEEEECCCT-TTTHHHHTSCTTCEEEEECC
T ss_pred             HcCCCCeEEEEECCCc-HHHHHHHHHhcCCCEEEEec
Confidence            1123469999986654 45588899999999998853

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.20  E-value=0.18  Score=34.77  Aligned_cols=89  Identities=17%  Similarity=0.107  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .+.+|+-+|+|  .++..+++.+. .+.+|+..|.+++..+...+.+   +        ......+-....  -..+|+|
T Consensus        20 ~~~~v~iiG~G--~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~---~--------~~~~~~~~~~~~--~~~~Div   84 (144)
T 3oj0_A           20 GGNKILLVGNG--MLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY---E--------YEYVLINDIDSL--IKNNDVI   84 (144)
T ss_dssp             CCCEEEEECCS--HHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH---T--------CEEEECSCHHHH--HHTCSEE
T ss_pred             cCCEEEEECCC--HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh---C--------CceEeecCHHHH--hcCCCEE
Confidence            48899999985  45544544432 2346889999988665433322   1        222221110000  1347999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +...+..+..-. ...+++|+.++-.
T Consensus        85 i~at~~~~~~~~-~~~l~~g~~vid~  109 (144)
T 3oj0_A           85 ITATSSKTPIVE-ERSLMPGKLFIDL  109 (144)
T ss_dssp             EECSCCSSCSBC-GGGCCTTCEEEEC
T ss_pred             EEeCCCCCcEee-HHHcCCCCEEEEc
Confidence            987776542211 2677887766543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.01  E-value=0.19  Score=39.87  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=39.1

Q ss_pred             CCeEEEeccCCCC--CCCCCCccEEEecCCCCc--------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         72 GRLHLRCRDGRTG--LLHQAPFDAIYLSTYVPE--------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        72 ~~~~~~~~d~~~~--~~~~~~~D~i~~~~~~~~--------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .+..++++|....  ..++++||+|+++.|...                    .+..+.++|+|||.+++.+...
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            4577888887532  234578999999988621                    2467789999999999976654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.59  E-value=2.9  Score=32.33  Aligned_cols=78  Identities=14%  Similarity=-0.033  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .++++|-.|++. ..++..+++.+. .+++|+.++.++...+.+.+.....       .++.++.+|+.+...       
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-------GVKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-------TCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHH
Confidence            467889888764 344444444331 2569999999876655555544442       346788888753211       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+.+|+++.+...
T Consensus       102 ~~~~~g~iD~lVnnAG~  118 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAF  118 (296)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence               01468999987764

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.39  E-value=0.48  Score=39.12  Aligned_cols=47  Identities=17%  Similarity=0.185  Sum_probs=36.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHHHH
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG---K-TGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~---~-~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      ...|+|+|+|+|.++..+++.+.   + ..+++.+|+|+...+.-++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            36899999999999888775542   1 13799999999988877777764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=89.27  E-value=1.6  Score=33.71  Aligned_cols=80  Identities=10%  Similarity=-0.022  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~-------   86 (216)
                      .+++||-.|++ |.++..+++.+ ..+++|+.++.++...+.+.+.+...+     ..++.++.+|+... ..       
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~v~~~~~~   84 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-----HENVVFHQLDVTDPIATMSSLADF   84 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEccCCCcHHHHHHHHHH
Confidence            46677777765 45555555443 235699999999988777776665532     35788999998654 10       


Q ss_pred             ---CCCCccEEEecCCCC
Q psy14962         87 ---HQAPFDAIYLSTYVP  101 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~~  101 (216)
                         ..+.+|+++.+.+..
T Consensus        85 ~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           85 IKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHSSCCEEEECCCCC
T ss_pred             HHHhCCCCCEEEECCccc
Confidence               014789999988753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.20  E-value=1.4  Score=36.98  Aligned_cols=87  Identities=15%  Similarity=0.004  Sum_probs=53.4

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|++|+-+|+|. |......++..  +++|+.+|.++.....+...            ...+  .+...   ....+|+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~~------------g~dv--~~lee---~~~~aDv  323 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATME------------GLQV--LTLED---VVSEADI  323 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------TCEE--CCGGG---TTTTCSE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------------CCcc--CCHHH---HHHhcCE
Confidence            3689999999984 33333333333  56999999998765544321            1222  22111   1235798


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~  120 (216)
                      ++.......++ ....+.+++++.++-.
T Consensus       324 Vi~atG~~~vl~~e~l~~mk~gaiVvNa  351 (488)
T 3ond_A          324 FVTTTGNKDIIMLDHMKKMKNNAIVCNI  351 (488)
T ss_dssp             EEECSSCSCSBCHHHHTTSCTTEEEEES
T ss_pred             EEeCCCChhhhhHHHHHhcCCCeEEEEc
Confidence            88776655544 4577889999877654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=89.07  E-value=0.73  Score=35.24  Aligned_cols=78  Identities=19%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|--|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.+.+      .++..+.+|+.+..         
T Consensus         8 ~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g------~~~~~~~~Dv~~~~~v~~~~~~~   80 (255)
T 4g81_D            8 TGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG------YDAHGVAFDVTDELAIEAAFSKL   80 (255)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence            4777777776654 444444433 236799999999998888777776644      56788888875321         


Q ss_pred             -CCCCCccEEEecCCC
Q psy14962         86 -LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~  100 (216)
                       ...++.|+++.+...
T Consensus        81 ~~~~G~iDiLVNNAG~   96 (255)
T 4g81_D           81 DAEGIHVDILINNAGI   96 (255)
T ss_dssp             HHTTCCCCEEEECCCC
T ss_pred             HHHCCCCcEEEECCCC
Confidence             123678999988764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.06  E-value=2.5  Score=31.04  Aligned_cols=94  Identities=19%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             eEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCccE
Q psy14962         19 KVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFDA   93 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~   93 (216)
                      +|+-+|+  |.++..+++.+. .+..|+.+|.+++.++...+.           ....++.+|......    .-..+|+
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----------~~~~~i~gd~~~~~~l~~a~i~~ad~   68 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----------LKATIIHGDGSHKEILRDAEVSKNDV   68 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----------SSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----------cCCeEEEcCCCCHHHHHhcCcccCCE
Confidence            4677776  555555554431 245899999999877654332           246788888763210    1246899


Q ss_pred             EEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |++..+...   ....+.+.+.+...++.....+.
T Consensus        69 vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~  103 (218)
T 3l4b_C           69 VVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPG  103 (218)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGG
T ss_pred             EEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcc
Confidence            988766543   23444455667777777665553

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=88.86  E-value=1.5  Score=33.63  Aligned_cols=79  Identities=11%  Similarity=0.027  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      ..++++|-.|++. .++..+++.+ ..+++|+.++.+++.++...+.+...+      .++.++.+|+.+...       
T Consensus        22 ~~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~   94 (279)
T 3sju_A           22 SRPQTAFVTGVSS-GIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG------HDVDGSSCDVTSTDEVHAAVAA   94 (279)
T ss_dssp             ---CEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEECCCCCHHHHHHHHHH
Confidence            3567788888655 4444444433 125699999999988877776665533      568888899763210       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        95 ~~~~~g~id~lv~nAg~  111 (279)
T 3sju_A           95 AVERFGPIGILVNSAGR  111 (279)
T ss_dssp             HHHHHCSCCEEEECCCC
T ss_pred             HHHHcCCCcEEEECCCC
Confidence               01468999987764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=88.82  E-value=1.1  Score=36.03  Aligned_cols=68  Identities=16%  Similarity=-0.046  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-C--CCCccEE
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-H--QAPFDAI   94 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~--~~~~D~i   94 (216)
                      .+|+-+||  |..+..+++.+.....|+..|.+.+.++.++             ..+..+..|+.+... .  -..+|+|
T Consensus        17 mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~-------------~~~~~~~~d~~d~~~l~~~~~~~DvV   81 (365)
T 3abi_A           17 MKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVK-------------EFATPLKVDASNFDKLVEVMKEFELV   81 (365)
T ss_dssp             CEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHT-------------TTSEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             cEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHh-------------ccCCcEEEecCCHHHHHHHHhCCCEE
Confidence            47999998  5666666666655668999999988776553             234555666542110 0  1457999


Q ss_pred             EecCCC
Q psy14962         95 YLSTYV  100 (216)
Q Consensus        95 ~~~~~~  100 (216)
                      ++..+.
T Consensus        82 i~~~p~   87 (365)
T 3abi_A           82 IGALPG   87 (365)
T ss_dssp             EECCCG
T ss_pred             EEecCC
Confidence            887664

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=88.06  E-value=1.6  Score=33.64  Aligned_cols=78  Identities=15%  Similarity=0.101  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++. .++..+++.+ ..+++|+.++.+++.++...+.+...+      .++.++.+|+.+...        
T Consensus        27 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           27 PSPVALITGAGS-GIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG------GQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             CCCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence            466788777655 4444444433 135699999999988777666654432      568888899763210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus       100 ~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A          100 VLKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence              01478999987664

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=88.01  E-value=2.8  Score=31.82  Aligned_cols=79  Identities=11%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-------   87 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------   87 (216)
                      .++++|-.|++. .++..+++.+. .+++|+.++.+++.++.+.+.+....     ..++.++..|+.+...-       
T Consensus        19 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   92 (266)
T 4egf_A           19 DGKRALITGATK-GIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTDVHTVAIDLAEPDAPAELARRA   92 (266)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTSTTHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            466777777654 45544544432 25699999999988877666654411     25788999998643210       


Q ss_pred             ---CCCccEEEecCCC
Q psy14962         88 ---QAPFDAIYLSTYV  100 (216)
Q Consensus        88 ---~~~~D~i~~~~~~  100 (216)
                         .+..|+++.+...
T Consensus        93 ~~~~g~id~lv~nAg~  108 (266)
T 4egf_A           93 AEAFGGLDVLVNNAGI  108 (266)
T ss_dssp             HHHHTSCSEEEEECCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence               1478999987664

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=87.84  E-value=2.3  Score=32.44  Aligned_cols=78  Identities=12%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++ |.++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+...        
T Consensus        20 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   92 (273)
T 1ae1_A           20 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLSRTERDKLMQTV   92 (273)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCCHHHHHHHHHHH
Confidence            46678887764 555555544432 25699999999887766655554432      467888888753210        


Q ss_pred             --CC-CCccEEEecCCC
Q psy14962         87 --HQ-APFDAIYLSTYV  100 (216)
Q Consensus        87 --~~-~~~D~i~~~~~~  100 (216)
                        .. +.+|+++.+...
T Consensus        93 ~~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           93 AHVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHHTTSCCCEEEECCCC
T ss_pred             HHHcCCCCcEEEECCCC
Confidence              01 568999987664

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.84  E-value=2.8  Score=31.71  Aligned_cols=78  Identities=8%  Similarity=-0.030  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCH---HHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-----
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMR---EQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-----   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   86 (216)
                      .++++|-.|++ |.++..+++.+. .+++|+.++.+.   +.++...+.+...      ..++.++..|+.+...     
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~   82 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ------GAKVALYQSDLSNEEEVAKLF   82 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT------TCEEEEEECCCCSHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHH
Confidence            46678877765 456666666553 356898886543   3444444444432      2568888889763221     


Q ss_pred             -----CCCCccEEEecCCC
Q psy14962         87 -----HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 -----~~~~~D~i~~~~~~  100 (216)
                           ..+..|+++.+...
T Consensus        83 ~~~~~~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           83 DFAEKEFGKVDIAINTVGK  101 (262)
T ss_dssp             HHHHHHHCSEEEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence                 01478999987764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.72  E-value=0.36  Score=36.75  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHhCCCCCCCCCeEE
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMR-------------------EQCEDAWETVMRIRPDLLNDGRLHL   76 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~   76 (216)
                      +.+|+-+|||. |......+...|. .+++.+|.+.                   .-.+.+.+.+...+.    ..++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np----~~~v~~  105 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINP----HIAITP  105 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT----TSEEEE
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCC----CcEEEE
Confidence            57899999986 5544333333332 4899999886                   556666666665431    112333


Q ss_pred             EeccCCCCCCC--CCCccEEEecCCCCc
Q psy14962         77 RCRDGRTGLLH--QAPFDAIYLSTYVPE  102 (216)
Q Consensus        77 ~~~d~~~~~~~--~~~~D~i~~~~~~~~  102 (216)
                      +..+.......  -..+|+|+.......
T Consensus       106 ~~~~~~~~~~~~~~~~~DvVi~~~d~~~  133 (249)
T 1jw9_B          106 VNALLDDAELAALIAEHDLVLDCTDNVA  133 (249)
T ss_dssp             ECSCCCHHHHHHHHHTSSEEEECCSSHH
T ss_pred             EeccCCHhHHHHHHhCCCEEEEeCCCHH
Confidence            33333211000  135899998765433

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=87.19  E-value=2.4  Score=31.98  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++ |.++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++.+|+.+...        
T Consensus         8 ~~k~vlVTGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   80 (260)
T 2ae2_A            8 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSSRSERQELMNTV   80 (260)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHH
Confidence            46778877764 555555544431 25699999999887766555554422      467888888753210        


Q ss_pred             --CC-CCccEEEecCCC
Q psy14962         87 --HQ-APFDAIYLSTYV  100 (216)
Q Consensus        87 --~~-~~~D~i~~~~~~  100 (216)
                        .. +.+|+++.+...
T Consensus        81 ~~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           81 ANHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHHTTTCCCEEEECCCC
T ss_pred             HHHcCCCCCEEEECCCC
Confidence              01 568999987663

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=86.95  E-value=3  Score=31.77  Aligned_cols=78  Identities=15%  Similarity=0.118  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM------------REQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .++++|-.|++. .++..+++.+ ..+++|+.+|.+            ++.++...+.+...+      .++.++.+|+.
T Consensus        12 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~   84 (278)
T 3sx2_A           12 TGKVAFITGAAR-GQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG------SRIVARQADVR   84 (278)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT------CCEEEEECCTT
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC------CeEEEEeCCCC
Confidence            467788888654 4444444433 125699999976            666665555555443      57889999976


Q ss_pred             CCCC----------CCCCccEEEecCCC
Q psy14962         83 TGLL----------HQAPFDAIYLSTYV  100 (216)
Q Consensus        83 ~~~~----------~~~~~D~i~~~~~~  100 (216)
                      +...          ..+..|+++.+...
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3221          01478999987765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=86.70  E-value=4.2  Score=31.11  Aligned_cols=78  Identities=9%  Similarity=-0.055  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeC-CHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEH-MREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH------   87 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------   87 (216)
                      .++++|-.|++. .++..+++.+ ..+++|+.++. +++.++...+.+...+      .++.++.+|+.+...-      
T Consensus        28 ~~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           28 ARPVAIVTGGRR-GIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG------ARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT------CCEEEEECCTTSGGGHHHHHHH
T ss_pred             CCCEEEEecCCC-HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHH
Confidence            456778777655 4444444433 12569999985 6766666655555533      5788899998643210      


Q ss_pred             ----CCCccEEEecCCC
Q psy14962         88 ----QAPFDAIYLSTYV  100 (216)
Q Consensus        88 ----~~~~D~i~~~~~~  100 (216)
                          .+..|+++.+...
T Consensus       101 ~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHHHSCCCEEEEECC-
T ss_pred             HHHHcCCCCEEEECCCc
Confidence                1468999987764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=86.59  E-value=2.6  Score=32.07  Aligned_cols=78  Identities=10%  Similarity=0.027  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEE-eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGV-EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .++++|-.|++.| ++..+++.+. .+++|+.+ ..+++..+...+.+...+      .++.++.+|+.+...       
T Consensus        26 ~~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~~   98 (267)
T 3u5t_A           26 TNKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG------GKALTAQADVSDPAAVRRLFAT   98 (267)
T ss_dssp             -CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEEcCCCCHHHHHHHHHH
Confidence            4677888887654 3333333321 15588877 445555555555555433      568888888763211       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        99 ~~~~~g~iD~lvnnAG~  115 (267)
T 3u5t_A           99 AEEAFGGVDVLVNNAGI  115 (267)
T ss_dssp             HHHHHSCEEEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence               01478999987764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=86.57  E-value=2.9  Score=32.35  Aligned_cols=78  Identities=13%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM------------REQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .++++|-.|++.| ++..+++.+ ..+++|+.+|.+            ++.++...+.+...+      .++.++..|+.
T Consensus        27 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~   99 (299)
T 3t7c_A           27 EGKVAFITGAARG-QGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG------RRIIASQVDVR   99 (299)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT------CCEEEEECCTT
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC------CceEEEECCCC
Confidence            4667888887654 444444333 225699999987            566665555555433      57888999976


Q ss_pred             CCCC----------CCCCccEEEecCCC
Q psy14962         83 TGLL----------HQAPFDAIYLSTYV  100 (216)
Q Consensus        83 ~~~~----------~~~~~D~i~~~~~~  100 (216)
                      +...          ..+..|+++.+...
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            3221          01468999877653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=86.51  E-value=4.1  Score=30.26  Aligned_cols=79  Identities=8%  Similarity=0.063  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++.++...+.+...+     ..++.++..|......        
T Consensus        13 ~~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~d~d~~~~~~~~~~~~   86 (247)
T 3i1j_A           13 KGRVILVTGAA-RGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-----QPQPLIIALNLENATAQQYRELAA   86 (247)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-----CCCceEEEeccccCCHHHHHHHHH
Confidence            46677777765 555555554432 25699999999998888777776633     2466777777632111        


Q ss_pred             ----CCCCccEEEecCCC
Q psy14962         87 ----HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ----~~~~~D~i~~~~~~  100 (216)
                          ..+.+|+++.+...
T Consensus        87 ~~~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           87 RVEHEFGRLDGLLHNASI  104 (247)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHhCCCCCEEEECCcc
Confidence                01468999987664

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=86.46  E-value=5.4  Score=30.41  Aligned_cols=77  Identities=12%  Similarity=-0.012  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMRE-QCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      ++++|-.|+ +|.++..+++.+. .+.+|+.++.++. ..+...+.+...+      .++.++..|+.....        
T Consensus        29 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~  101 (283)
T 1g0o_A           29 GKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGVVEDIVRMFEEA  101 (283)
T ss_dssp             TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC------CCeEEEEcCCCCHHHHHHHHHHH
Confidence            556776665 4555555555432 2568999987754 3344334444322      467888888753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus       102 ~~~~g~iD~lv~~Ag~  117 (283)
T 1g0o_A          102 VKIFGKLDIVCSNSGV  117 (283)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence              01468999887664

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=86.40  E-value=4.5  Score=30.30  Aligned_cols=79  Identities=10%  Similarity=-0.021  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC--CCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG--RTGL-------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~-------   85 (216)
                      .++++|-.|++. .++..+++.+ ..+++|+.++.+++.++...+.+...+     ..++.++..|.  ....       
T Consensus        11 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   84 (252)
T 3f1l_A           11 NDRIILVTGASD-GIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-----GRQPQWFILDLLTCTSENCQQLAQ   84 (252)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCCceEEEEecccCCHHHHHHHHH
Confidence            467788888654 4444444433 125699999999988777766655432     24678888887  2211       


Q ss_pred             ---CCCCCccEEEecCCC
Q psy14962         86 ---LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~  100 (216)
                         ...+..|+++.+...
T Consensus        85 ~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           85 RIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHHHCSCCSEEEECCCC
T ss_pred             HHHHhCCCCCEEEECCcc
Confidence               011468999987664

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=86.04  E-value=2.1  Score=32.83  Aligned_cols=78  Identities=17%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++ |.++..+++.+ ..+++|+.++.+++..+...+.+...+      .++.++..|..+...        
T Consensus        32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~  104 (275)
T 4imr_A           32 RGRTALVTGSS-RGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG------GTAQELAGDLSEAGAGTDLIERA  104 (275)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT------CCEEEEECCTTSTTHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEecCCCHHHHHHHHHHH
Confidence            46677777755 45555554443 225699999998887776666665533      578889999764321        


Q ss_pred             -CCCCccEEEecCCC
Q psy14962         87 -HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 -~~~~~D~i~~~~~~  100 (216)
                       ..+.+|+++.+...
T Consensus       105 ~~~g~iD~lvnnAg~  119 (275)
T 4imr_A          105 EAIAPVDILVINASA  119 (275)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCCCEEEECCCC
Confidence             01468999987764

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=86.03  E-value=2.9  Score=35.07  Aligned_cols=87  Identities=16%  Similarity=-0.022  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|.+|.-+|.|. |......++.+  +.+|++.|.++.....+.    .        ..+.+  .+....   -...|+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~--G~~Viv~d~~~~~~~~a~----~--------~g~~~--~~l~el---l~~aDi  315 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAV----M--------EGFNV--VTLDEI---VDKGDF  315 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHH----T--------TTCEE--CCHHHH---TTTCSE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhC--cCEEEEEeCChhhHHHHH----H--------cCCEe--cCHHHH---HhcCCE
Confidence            3688999999877 65555555555  459999999987542222    1        11222  121111   134799


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~  120 (216)
                      |+.......++ ....+.+|||++++=.
T Consensus       316 Vi~~~~t~~lI~~~~l~~MK~gailiNv  343 (479)
T 1v8b_A          316 FITCTGNVDVIKLEHLLKMKNNAVVGNI  343 (479)
T ss_dssp             EEECCSSSSSBCHHHHTTCCTTCEEEEC
T ss_pred             EEECCChhhhcCHHHHhhcCCCcEEEEe
Confidence            99886555544 5677889998877654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=86.03  E-value=3  Score=31.91  Aligned_cols=78  Identities=17%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC----------------HHHHHHHHHHHHHhCCCCCCCCCeEEEe
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM----------------REQCEDAWETVMRIRPDLLNDGRLHLRC   78 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (216)
                      .++++|-.|++.| ++..+++.+ ..+++|+.+|.+                ++.++...+.+...+      .++.++.
T Consensus        10 ~~k~~lVTGas~g-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   82 (286)
T 3uve_A           10 EGKVAFVTGAARG-QGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN------RRIVTAE   82 (286)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT------CCEEEEE
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC------CceEEEE
Confidence            4678888887664 444444333 125699999887                566655555554432      5788888


Q ss_pred             ccCCCCCC----------CCCCccEEEecCCC
Q psy14962         79 RDGRTGLL----------HQAPFDAIYLSTYV  100 (216)
Q Consensus        79 ~d~~~~~~----------~~~~~D~i~~~~~~  100 (216)
                      .|+.+...          ..+..|+++.+...
T Consensus        83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            99763210          01468999987664

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.87  E-value=5.8  Score=29.90  Aligned_cols=78  Identities=14%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++.| ++..+++.+ ..+++|+.++.+++.++...+.+...+      .++.++..|+.+...        
T Consensus        10 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~   82 (264)
T 3ucx_A           10 TDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG------RRALSVGTDITDDAQVAHLVDET   82 (264)
T ss_dssp             TTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHH
Confidence            4778888887664 333333332 125699999999988887777666543      578889999763221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        83 ~~~~g~id~lv~nAg~   98 (264)
T 3ucx_A           83 MKAYGRVDVVINNAFR   98 (264)
T ss_dssp             HHHTSCCSEEEECCCS
T ss_pred             HHHcCCCcEEEECCCC
Confidence              12478999987643

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=85.84  E-value=1.3  Score=40.60  Aligned_cols=41  Identities=20%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHH
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTG--RVFGVEHMREQCEDAWET   60 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~--~v~~~D~~~~~~~~a~~~   60 (216)
                      ..+++|+.||.|.++.-+.+.   +.  -+.++|+++...+.-+.+
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N  582 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLN  582 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHH
T ss_pred             CCeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHh
Confidence            357999999999999888766   33  577999999877655544

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=85.83  E-value=4.6  Score=30.11  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+++||-.|++. .++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++.+|+.+...        
T Consensus         8 ~~k~vlITGas~-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGSGG-GIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG------GTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence            467888888654 44544444431 25699999999988887777665533      568888888763210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        81 ~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence              01468999987764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.39  E-value=6.2  Score=29.86  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      .+||-.|+  |.++..+++.+. .+.+|++++.++.......    .        .++.++.+|..+..  ...+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~--------~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A--------SGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H--------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h--------CCCeEEEecccccc--cCCCCEEEE
Confidence            58999994  888888877652 2469999998876543322    2        45888999987533  456899987


Q ss_pred             cCCC
Q psy14962         97 STYV  100 (216)
Q Consensus        97 ~~~~  100 (216)
                      ....
T Consensus        70 ~a~~   73 (286)
T 3ius_A           70 STAP   73 (286)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            7654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.30  E-value=5.8  Score=30.38  Aligned_cols=86  Identities=15%  Similarity=0.024  Sum_probs=49.1

Q ss_pred             CeEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         18 AKVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        18 ~~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .+|.-||+|. |.. +..+++. +.+.+|++.|.+++.++.+.+    .+       .......|....   -...|+|+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~----~g-------~~~~~~~~~~~~---~~~aDvVi   71 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRD-HPHYKIVGYNRSDRSRDIALE----RG-------IVDEATADFKVF---AALADVII   71 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSSHHHHHHHHH----TT-------SCSEEESCTTTT---GGGCSEEE
T ss_pred             ceEEEEeeCHHHHHHHHHHHhC-CCCcEEEEEcCCHHHHHHHHH----cC-------CcccccCCHHHh---hcCCCEEE
Confidence            4788999887 443 3333333 324589999999887765543    12       111112232211   13479999


Q ss_pred             ecCCCCc---hHHHHHhc-CCCCeEEE
Q psy14962         96 LSTYVPE---IPYSILLQ-LKPGGRLV  118 (216)
Q Consensus        96 ~~~~~~~---~~~~~~~~-L~~gG~lv  118 (216)
                      ..-+...   ++..+... ++++..++
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            8877544   44555566 77776555

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=85.29  E-value=5.2  Score=30.93  Aligned_cols=78  Identities=15%  Similarity=0.071  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-----C--
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-----H--   87 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--   87 (216)
                      .+.+||-.|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+      .++.++..|+.+...     .  
T Consensus        30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG------FDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHHHH
Confidence            4678888887654 444444433 125699999999998887777766533      578889999763221     0  


Q ss_pred             ---CCCccEEEecCCC
Q psy14962         88 ---QAPFDAIYLSTYV  100 (216)
Q Consensus        88 ---~~~~D~i~~~~~~  100 (216)
                         .+.+|+++.+...
T Consensus       103 ~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHSSCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCCc
Confidence               1468999988764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.10  E-value=5.1  Score=30.54  Aligned_cols=87  Identities=18%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             eEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC-CccEEEe
Q psy14962         19 KVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA-PFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~i~~   96 (216)
                      +|.-||+|. |......+...+...+|++.|.+++.++.+.+    .+.     . .. ...|....   -. ..|+|+.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~-----~-~~-~~~~~~~~---~~~~aDvVil   68 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGI-----I-DE-GTTSIAKV---EDFSPDFVML   68 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTS-----C-SE-EESCGGGG---GGTCCSEEEE
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCC-----c-cc-ccCCHHHH---hcCCCCEEEE
Confidence            688898877 44333333332211279999999987765542    221     1 11 11222111   12 5799998


Q ss_pred             cCCCCc---hHHHHHhcCCCCeEEEE
Q psy14962         97 STYVPE---IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        97 ~~~~~~---~~~~~~~~L~~gG~lv~  119 (216)
                      .-+...   ++..+...++++..++.
T Consensus        69 avp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           69 SSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            877544   34556677888876554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.03  E-value=3.3  Score=31.16  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+      .++.++.+|+.+...        
T Consensus         6 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~   78 (252)
T 3h7a_A            6 RNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG------GRIVARSLDARNEDEVTAFLNAA   78 (252)
T ss_dssp             CSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECcCCCHHHHHHHHHHH
Confidence            4677888887654 444444433 125699999999988877777666533      578889999753210        


Q ss_pred             -CCCCccEEEecCCC
Q psy14962         87 -HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 -~~~~~D~i~~~~~~  100 (216)
                       ..+.+|+++.+...
T Consensus        79 ~~~g~id~lv~nAg~   93 (252)
T 3h7a_A           79 DAHAPLEVTIFNVGA   93 (252)
T ss_dssp             HHHSCEEEEEECCCC
T ss_pred             HhhCCceEEEECCCc
Confidence             00468999987764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.94  E-value=6.8  Score=28.89  Aligned_cols=94  Identities=6%  Similarity=-0.100  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAP   90 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~   90 (216)
                      ...+|+-+|+  |..+..+++.+.. +. |+++|.+++.++.+.    .         .+.++.+|.....    ..-..
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~----~---------~~~~i~gd~~~~~~l~~a~i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR----S---------GANFVHGDPTRVSDLEKANVRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH----T---------TCEEEESCTTCHHHHHHTTCTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh----c---------CCeEEEcCCCCHHHHHhcCcch
Confidence            4568999987  5677777776543 34 999999988765543    1         2678888875321    11246


Q ss_pred             ccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|.|++..+-..   ......+.+.|+..++....++.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~  109 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYE  109 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence            798888766532   22345566778778877766654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=84.87  E-value=2.4  Score=32.58  Aligned_cols=79  Identities=14%  Similarity=-0.021  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++ |.++..+++.+. .+++|+.++.+++.++...+.+...+     ...+.++.+|+.+...        
T Consensus        32 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~  105 (281)
T 4dry_A           32 EGRIALVTGGG-TGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-----GNIVRAVVCDVGDPDQVAALFAAV  105 (281)
T ss_dssp             --CEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCeEEEEEcCCCCHHHHHHHHHHH
Confidence            46677777755 555555554432 35699999999988777666655432     2345888889763221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus       106 ~~~~g~iD~lvnnAG~  121 (281)
T 4dry_A          106 RAEFARLDLLVNNAGS  121 (281)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              01468999987664

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=84.75  E-value=6.9  Score=29.63  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----CCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----LHQA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~   89 (216)
                      .|+++|--|++.| ++...++.+ ..+++|+..|.+..  +.+.+.+...+      .++..+..|+.+..     ...+
T Consensus         8 ~GKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~g   78 (247)
T 4hp8_A            8 EGRKALVTGANTG-LGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG------GNASALLIDFADPLAAKDSFTDA   78 (247)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT------CCEEEEECCTTSTTTTTTSSTTT
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC------CcEEEEEccCCCHHHHHHHHHhC
Confidence            4777777776665 333333332 13679999987753  23333444433      57888888876332     2346


Q ss_pred             CccEEEecCCC
Q psy14962         90 PFDAIYLSTYV  100 (216)
Q Consensus        90 ~~D~i~~~~~~  100 (216)
                      .+|+.+.+...
T Consensus        79 ~iDiLVNNAGi   89 (247)
T 4hp8_A           79 GFDILVNNAGI   89 (247)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999988764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=84.20  E-value=4.7  Score=30.37  Aligned_cols=78  Identities=13%  Similarity=0.058  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.+||-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+...+      .++.++..|+.....        
T Consensus        28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~  100 (262)
T 3rkr_A           28 SGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG------GEAESHACDLSHSDAIAAFATGV  100 (262)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------CceeEEEecCCCHHHHHHHHHHH
Confidence            45677777764 55555555443 235699999999988887777666533      568888888753211        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus       101 ~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          101 LAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence              01468999987664

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=83.86  E-value=5.9  Score=30.11  Aligned_cols=83  Identities=19%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             eEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEec
Q psy14962         19 KVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS   97 (216)
Q Consensus        19 ~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~   97 (216)
                      +|.-+|+|. |......+...  +.+|+++|.+++.++.+.+    .+.     . .. ...+...   . ...|+|+..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~----~g~-----~-~~-~~~~~~~---~-~~~D~vi~a   64 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQL-----V-DE-AGQDLSL---L-QTAKIIFLC   64 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTS-----C-SE-EESCGGG---G-TTCSEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCC-----C-cc-ccCCHHH---h-CCCCEEEEE
Confidence            577888876 43322222222  3489999999987765532    121     1 11 1222211   1 357999988


Q ss_pred             CCCCc---hHHHHHhcCCCCeEEE
Q psy14962         98 TYVPE---IPYSILLQLKPGGRLV  118 (216)
Q Consensus        98 ~~~~~---~~~~~~~~L~~gG~lv  118 (216)
                      -+...   ++..+...++++..++
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEE
Confidence            77543   4456666787877554

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=83.78  E-value=3.7  Score=32.12  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM------------REQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      .++++|-.|++. .++..+++.+ ..+++|+.+|.+            ++.++...+.+...+      .++.++.+|+.
T Consensus        45 ~gk~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~  117 (317)
T 3oec_A           45 QGKVAFITGAAR-GQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG------RRIIARQADVR  117 (317)
T ss_dssp             TTCEEEESSCSS-HHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT------CCEEEEECCTT
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC------CeEEEEECCCC
Confidence            356777777654 4444444433 125699999876            555555555554433      57888889975


Q ss_pred             CCCC----------CCCCccEEEecCCC
Q psy14962         83 TGLL----------HQAPFDAIYLSTYV  100 (216)
Q Consensus        83 ~~~~----------~~~~~D~i~~~~~~  100 (216)
                      +...          ..+.+|+++.+...
T Consensus       118 d~~~v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          118 DLASLQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3210          01478999987764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=83.57  E-value=6.2  Score=26.19  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--C--CCCCc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--L--HQAPF   91 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~~~   91 (216)
                      +.+|+-+|+|.  ++..+++.+. .+.+|+.+|.+++..+.++    .        ....++.+|.....  .  ....+
T Consensus         6 ~~~v~I~G~G~--iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~--------~~~~~~~~d~~~~~~l~~~~~~~~   71 (144)
T 2hmt_A            6 NKQFAVIGLGR--FGGSIVKELHRMGHEVLAVDINEEKVNAYA----S--------YATHAVIANATEENELLSLGIRNF   71 (144)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCCEEEESCHHHHHTTT----T--------TCSEEEECCTTCHHHHHTTTGGGC
T ss_pred             CCcEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H--------hCCEEEEeCCCCHHHHHhcCCCCC
Confidence            56799999754  4444443321 2458999999886544322    1        12345666654211  0  12458


Q ss_pred             cEEEecCCCC-c---hHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLSTYVP-E---IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~~~~-~---~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |+|+...+.. .   ......+.+.+. .++....+
T Consensus        72 d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           72 EYVIVAIGANIQASTLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred             CEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence            9999877754 2   223334455665 55554433

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=83.46  E-value=3.6  Score=30.96  Aligned_cols=78  Identities=8%  Similarity=-0.003  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----CC--
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----LH--   87 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--   87 (216)
                      .+.+||-.|+ +|.++..+++.+. .+.+|+.++.++..++...+.+...+      .++.++..|.....     ..  
T Consensus        13 ~~k~vlITGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   85 (266)
T 1xq1_A           13 KAKTVLVTGG-TKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASLRPEREKLMQTV   85 (266)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeeEEEECCCCCHHHHHHHHHHH
Confidence            4567776665 5556655555432 25699999999877766555554422      46788888875321     00  


Q ss_pred             ----CCCccEEEecCCC
Q psy14962         88 ----QAPFDAIYLSTYV  100 (216)
Q Consensus        88 ----~~~~D~i~~~~~~  100 (216)
                          .+.+|+++.+...
T Consensus        86 ~~~~~~~id~li~~Ag~  102 (266)
T 1xq1_A           86 SSMFGGKLDILINNLGA  102 (266)
T ss_dssp             HHHHTTCCSEEEEECCC
T ss_pred             HHHhCCCCcEEEECCCC
Confidence                1468999877653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.34  E-value=6.6  Score=29.53  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-CCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGS-GSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~-G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .+.++|-.|+ |.|. +..+++.+ ..+.+|+.++.+++.++...+.+...+     ..++.++.+|+.+...       
T Consensus        21 ~~k~vlITGasg~GI-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~   94 (266)
T 3o38_A           21 KGKVVLVTAAAGTGI-GSTTARRALLEGADVVISDYHERRLGETRDQLADLG-----LGRVEAVVCDVTSTEAVDALITQ   94 (266)
T ss_dssp             TTCEEEESSCSSSSH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-----SSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCch-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-----CCceEEEEeCCCCHHHHHHHHHH
Confidence            4678888887 4543 22232222 125699999999988877777665532     3578899999863211       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+.+|+++.+...
T Consensus        95 ~~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           95 TVEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCcEEEECCCc
Confidence               01468999987764

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=83.07  E-value=4.7  Score=30.21  Aligned_cols=81  Identities=14%  Similarity=0.108  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++.| ++..+++.+. .+++|+.++.+++.++...+.+....   ....++.++.+|+.+...        
T Consensus         6 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            6 QKGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSN---KHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             CCCEEEEESTTSH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHC---TTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc---cccCcceEEeccCCCHHHHHHHHHHH
Confidence            4677888887654 3333333321 15699999999988877776665532   012567888889763210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        82 ~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHHCCEEEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence              01468999987764

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=82.99  E-value=4.2  Score=34.23  Aligned_cols=87  Identities=10%  Similarity=-0.077  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         15 QEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      -.|.+|.-+|.|. |......++.+  +.+|++.|.++.....+.    .        ....+.  +....   -...|+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~--G~~V~v~d~~~~~~~~a~----~--------~G~~~~--~l~el---l~~aDi  335 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGL--GATVWVTEIDPICALQAA----M--------EGYRVV--TMEYA---ADKADI  335 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSCHHHHHHHH----T--------TTCEEC--CHHHH---TTTCSE
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCChHhHHHHH----H--------cCCEeC--CHHHH---HhcCCE
Confidence            3688999998776 55444444443  569999999987532221    1        112221  21111   134799


Q ss_pred             EEecCCCCchH-HHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPEIP-YSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~~~-~~~~~~L~~gG~lv~~  120 (216)
                      |+.......++ ....+.+|||++++=.
T Consensus       336 Vi~~~~t~~lI~~~~l~~MK~gAilINv  363 (494)
T 3d64_A          336 FVTATGNYHVINHDHMKAMRHNAIVCNI  363 (494)
T ss_dssp             EEECSSSSCSBCHHHHHHCCTTEEEEEC
T ss_pred             EEECCCcccccCHHHHhhCCCCcEEEEc
Confidence            99886544444 5677889998877654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=82.99  E-value=1.4  Score=35.48  Aligned_cols=84  Identities=17%  Similarity=0.058  Sum_probs=52.5

Q ss_pred             CCCCeEEEE--cCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CC---
Q psy14962         15 QEGAKVLDI--GSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GL---   85 (216)
Q Consensus        15 ~~~~~vldi--G~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~---   85 (216)
                      .+|.+||-+  |+|. |..+..+++..+  ++|++++.+++.++.+++.    |     .+.  ++..+-..   ..   
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~l----G-----a~~--~~~~~~~~~~~~v~~~  235 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKAQ----G-----AVH--VCNAASPTFMQDLTEA  235 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHHT----T-----CSC--EEETTSTTHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHhC----C-----CcE--EEeCCChHHHHHHHHH
Confidence            678999999  4544 677788888864  4899999999988877652    2     122  22111110   00   


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcC
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQL  111 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L  111 (216)
                      .....+|+|+-...-......+.+.|
T Consensus       236 t~~~g~d~v~d~~g~~~~~~~~~~~l  261 (379)
T 3iup_A          236 LVSTGATIAFDATGGGKLGGQILTCM  261 (379)
T ss_dssp             HHHHCCCEEEESCEEESHHHHHHHHH
T ss_pred             hcCCCceEEEECCCchhhHHHHHHhc
Confidence            01135999998777665555555555

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=82.83  E-value=14  Score=28.50  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         17 GAKVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        17 ~~~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ..+|.-||+|. |.. +..+++.   +.+|++.|.+++.++.+.+.    +        ......+....   -...|+|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~---G~~V~~~dr~~~~~~~~~~~----g--------~~~~~~~~~e~---~~~aDvv   68 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRA---GLSTWGADLNPQACANLLAE----G--------ACGAAASAREF---AGVVDAL   68 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHT----T--------CSEEESSSTTT---TTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC---CCeEEEEECCHHHHHHHHHc----C--------CccccCCHHHH---HhcCCEE
Confidence            35788898876 432 2333332   45899999999877655432    2        11112232221   1346999


Q ss_pred             EecCCCCchHHHH-------HhcCCCCeEEEEe
Q psy14962         95 YLSTYVPEIPYSI-------LLQLKPGGRLVCG  120 (216)
Q Consensus        95 ~~~~~~~~~~~~~-------~~~L~~gG~lv~~  120 (216)
                      ++.-+.....+.+       ...+++|..++-.
T Consensus        69 i~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~  101 (303)
T 3g0o_A           69 VILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVS  101 (303)
T ss_dssp             EECCSSHHHHHHHHC--CCCGGGSCTTCEEEEC
T ss_pred             EEECCCHHHHHHHHhChhhHHhhCCCCCEEEec
Confidence            9988765433333       3567777766543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=82.82  E-value=5.7  Score=30.16  Aligned_cols=77  Identities=10%  Similarity=-0.008  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---------   86 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------   86 (216)
                      ++++|-.|++. .++..+++.+ ..+++|+.++.+++.++...+.+...+      .++.++..|+.+...         
T Consensus         4 ~k~~lVTGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~   76 (264)
T 3tfo_A            4 DKVILITGASG-GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG------GTALAQVLDVTDRHSVAAFAQAAV   76 (264)
T ss_dssp             TCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCcc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            56777777654 4444444433 235699999999988887777666533      567788888753210         


Q ss_pred             -CCCCccEEEecCCC
Q psy14962         87 -HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 -~~~~~D~i~~~~~~  100 (216)
                       ..+..|+++.+.+.
T Consensus        77 ~~~g~iD~lVnnAG~   91 (264)
T 3tfo_A           77 DTWGRIDVLVNNAGV   91 (264)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence             01468999987764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=82.64  E-value=2.3  Score=33.66  Aligned_cols=44  Identities=30%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14962         16 EGAKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVM   62 (216)
Q Consensus        16 ~~~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (216)
                      ...+|.-||+|+ |. ++..++..   +..|+..|++++.++.+.+++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~---G~~V~l~D~~~~~l~~~~~~i~   50 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASG---GFRVKLYDIEPRQITGALENIR   50 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT---TCCEEEECSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHH
Confidence            346899999998 44 44444444   5699999999999887776554

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=82.55  E-value=6.8  Score=30.07  Aligned_cols=62  Identities=13%  Similarity=-0.104  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHHHH-HhCCCCCCCCCeEEEeccCCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVE-HMREQCEDAWETVM-RIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D-~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+.++|-.|++ |.++..+++.+. .+++|+.++ .+++.++.+.+.+. ..      ..++.++..|+...
T Consensus         8 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dl~~~   72 (291)
T 1e7w_A            8 TVPVALVTGAA-KRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR------PNSAITVQADLSNV   72 (291)
T ss_dssp             CCCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS------TTCEEEEECCCSSS
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc------CCeeEEEEeecCCc
Confidence            35667766655 555555555442 256999999 99887776665554 22      25688888997643

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=82.08  E-value=9.6  Score=29.73  Aligned_cols=80  Identities=11%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.+||-.|++.| ++..+++.+ ..+.+|++++.+++.++.+.+.+...+.    ..++.++..|+.....        
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~   81 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS----GPEVMGVQLDVASREGFKMAADEV   81 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCeEEEEECCCCCHHHHHHHHHHH
Confidence            4678888887654 444444433 2356999999999888877776655331    1268888999763210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        82 ~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           82 EARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHTCCEEEEEECCCC
T ss_pred             HHhCCCCCEEEECCCc
Confidence              11468999988764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=81.75  E-value=7.6  Score=28.77  Aligned_cols=78  Identities=10%  Similarity=-0.012  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .+.++|-.|++ |.++..+++.+. .+.+|+.++.+++..+...+.+...+      .++.++..|..+..         
T Consensus         4 ~~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~   76 (247)
T 3lyl_A            4 NEKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG------FKARGLVLNISDIESIQNFFAEI   76 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEecCCCHHHHHHHHHHH
Confidence            35677777754 555555544432 25699999999988877777666543      56888889975321         


Q ss_pred             -CCCCCccEEEecCCC
Q psy14962         86 -LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~  100 (216)
                       ...+.+|+++.+...
T Consensus        77 ~~~~~~id~li~~Ag~   92 (247)
T 3lyl_A           77 KAENLAIDILVNNAGI   92 (247)
T ss_dssp             HHTTCCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence             012468999987764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=81.69  E-value=8.7  Score=28.15  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe-EEEeccCCCCCC-CCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL-HLRCRDGRTGLL-HQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~-~~~~~D   92 (216)
                      .+.+||-.|+ +|.++..+++.+ ..+.+|++++.++...+...    .        .++ .++.+|...... .-+.+|
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~--------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELR----E--------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----H--------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHH----h--------CCCceEEEcccHHHHHHHHcCCC
Confidence            4678887775 566665555543 23569999998887654322    2        357 888999862211 124689


Q ss_pred             EEEecCCC
Q psy14962         93 AIYLSTYV  100 (216)
Q Consensus        93 ~i~~~~~~  100 (216)
                      +|+.....
T Consensus        87 ~vi~~ag~   94 (236)
T 3e8x_A           87 AVVFAAGS   94 (236)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99987764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=81.68  E-value=16  Score=28.02  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             CeEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe------ccCC--C--CC
Q psy14962         18 AKVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC------RDGR--T--GL   85 (216)
Q Consensus        18 ~~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~d~~--~--~~   85 (216)
                      .+|.-+|+|. |.. +..+++.   +.+|+.+|.+++.++..++.    +        +....      ....  .  ..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~---g~~V~~~~r~~~~~~~~~~~----g--------~~~~~~~~~~~~~~~~~~~~~~   68 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQG---GNDVTLIDQWPAHIEAIRKN----G--------LIADFNGEEVVANLPIFSPEEI   68 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHH----C--------EEEEETTEEEEECCCEECGGGC
T ss_pred             CeEEEECcCHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHhC----C--------EEEEeCCCeeEecceeecchhh
Confidence            3788999876 432 2333332   45899999998877655443    1        11111      0000  0  01


Q ss_pred             CC-CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         86 LH-QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~-~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                      .. -..+|+|+..-+...   +++.+...++++..++...
T Consensus        69 ~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           69 DHQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CTTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             cccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEec
Confidence            00 125899998776533   4456667787777665543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=81.54  E-value=9.8  Score=28.28  Aligned_cols=77  Identities=9%  Similarity=-0.005  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-----C--
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-----H--   87 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--   87 (216)
                      .+.+||-.|++ |.++..+++.+. .+.+|+.++.++...+...+.+...+      .++.++.+|+.+...     .  
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG------HDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEecCCCHHHHHHHHHHH
Confidence            46778877754 555555555432 25699999999877666555554422      468888899763211     0  


Q ss_pred             ---CCCccEEEecCC
Q psy14962         88 ---QAPFDAIYLSTY   99 (216)
Q Consensus        88 ---~~~~D~i~~~~~   99 (216)
                         .+.+|+++.+..
T Consensus        85 ~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           85 HEQEGRVDILVACAG   99 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence               136899987665

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=81.24  E-value=11  Score=31.18  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=54.7

Q ss_pred             CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------hC-CCCC--CCCCeEEEeccCCCCC
Q psy14962         18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-------IR-PDLL--NDGRLHLRCRDGRTGL   85 (216)
Q Consensus        18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~-~~~~--~~~~~~~~~~d~~~~~   85 (216)
                      .+|.-||+|. |. ++..++..   +..|+..|.+++.++.+.+....       .+ ++..  ......+ ..|..   
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~---G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~---  110 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV---GISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK---  110 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG---
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH---
Confidence            4699999987 43 33333333   45899999999988877653321       11 0000  0011222 23321   


Q ss_pred             CCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~  121 (216)
                       .-...|+|+..-+-.     .++..+...++++.+++..+
T Consensus       111 -~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snT  150 (463)
T 1zcj_A          111 -ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT  150 (463)
T ss_dssp             -GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             -HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence             123479999877643     24456777888887776533

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=81.17  E-value=9.1  Score=32.05  Aligned_cols=96  Identities=20%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCC------------CeEEEeccCCC
Q psy14962         18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG------------RLHLRCRDGRT   83 (216)
Q Consensus        18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~d~~~   83 (216)
                      .+|.-||+|. |. ++..+++.   +..|+..|.+++.++.+.+.............            ++.+. .|.. 
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~a---G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-   80 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASH---GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDIH-   80 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCGG-
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCHH-
Confidence            4688888887 43 34444443   45899999999999887765432110000001            22221 2221 


Q ss_pred             CCCCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEee
Q psy14962         84 GLLHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .-...|+|+..-+-.     .++.++...++++.+++..+
T Consensus        81 ---~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ilasnt  120 (483)
T 3mog_A           81 ---ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNT  120 (483)
T ss_dssp             ---GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ---HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecC
Confidence               123479999876643     35567778888888775533

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.12  E-value=6.4  Score=29.53  Aligned_cols=78  Identities=9%  Similarity=-0.033  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .++++|-.|++. .++..+++.+. .+++|+.++.+++..+...+.+...+      .++.++..|..+...        
T Consensus        11 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A           11 NDAVAIVTGAAA-GIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG------GKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             TTCEEEECSCSS-HHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEECCCCCHHHHHHHHHHH
Confidence            466777777655 44444443321 25699999999988877776665533      578888889763211        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        84 ~~~~g~id~lv~nAg~   99 (256)
T 3gaf_A           84 LDQFGKITVLVNNAGG   99 (256)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              01468999987664

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=81.05  E-value=10  Score=28.64  Aligned_cols=78  Identities=13%  Similarity=0.037  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.+||-.|++ |.++..+++.+. .+.+|++++.++..++...+.+...+      .++.++.+|+.+...        
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~v~~~~~~~  102 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSNREDIYSSAKKV  102 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC------CeEEEEEeeCCCHHHHHHHHHHH
Confidence            45678877754 556655555432 25699999999887776665555432      468888899763210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus       103 ~~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A          103 KAEIGDVSILVNNAGV  118 (272)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             HHHCCCCcEEEECCCc
Confidence              11468999987654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.97  E-value=4.6  Score=30.03  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LH   87 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~   87 (216)
                      .++.+||-.|++. .++..+++.+. .+.+|+.++.+++.++...+.+.         .++.+...|.....      ..
T Consensus        12 ~~~k~vlVTGas~-gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~   81 (249)
T 3f9i_A           12 LTGKTSLITGASS-GIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---------DNYTIEVCNLANKEECSNLISK   81 (249)
T ss_dssp             CTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------SSEEEEECCTTSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---------cCccEEEcCCCCHHHHHHHHHh
Confidence            4567788777654 45555544431 25699999999887766554432         46788888875321      11


Q ss_pred             CCCccEEEecCCC
Q psy14962         88 QAPFDAIYLSTYV  100 (216)
Q Consensus        88 ~~~~D~i~~~~~~  100 (216)
                      .+..|+++.+...
T Consensus        82 ~~~id~li~~Ag~   94 (249)
T 3f9i_A           82 TSNLDILVCNAGI   94 (249)
T ss_dssp             CSCCSEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            2468999887664

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=80.83  E-value=8.4  Score=30.33  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=49.8

Q ss_pred             CeEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec------c---CCCCCC
Q psy14962         18 AKVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR------D---GRTGLL   86 (216)
Q Consensus        18 ~~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------d---~~~~~~   86 (216)
                      .+|.-+|+|. |.. +..+++.   +..|+.+|.+++.++..++..   +        +.+...      .   ......
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~   70 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK---GQSVLAWDIDAQRIKEIQDRG---A--------IIAEGPGLAGTAHPDLLTSDIG   70 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHT---S--------EEEESSSCCEEECCSEEESCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHhcC---C--------eEEeccccccccccceecCCHH
Confidence            4799999876 433 2333332   458999999988776554431   1        111100      0   000100


Q ss_pred             C-CCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         87 H-QAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~-~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      . -..+|+|+..-+...   +++.+...++++..++..
T Consensus        71 ~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           71 LAVKDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             HHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             HHHhcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence            0 135899998777654   445666678887766554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=80.82  E-value=5.6  Score=30.05  Aligned_cols=80  Identities=16%  Similarity=0.093  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ   88 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~   88 (216)
                      .++++|-.|++ |.++..+++.+. .+++|+.++.+++.++...+.+...+.    ...+.++..|.....      ..-
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~   83 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP----DAILQPVVADLGTEQGCQDVIEKY   83 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT----TCEEEEEECCTTSHHHHHHHHHHC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEecCCCCHHHHHHHHHhc
Confidence            46677777755 455555544431 256999999999887776666655321    245677788875321      112


Q ss_pred             CCccEEEecCCC
Q psy14962         89 APFDAIYLSTYV  100 (216)
Q Consensus        89 ~~~D~i~~~~~~  100 (216)
                      +..|+++.+...
T Consensus        84 g~id~lv~nAg~   95 (267)
T 3t4x_A           84 PKVDILINNLGI   95 (267)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468999987764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=80.67  E-value=11  Score=27.96  Aligned_cols=78  Identities=12%  Similarity=0.025  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .+.++|-.|++ |.++..+++.+. .+.+|+.++.+++.++...+.+...+      .++.++..|+.+...        
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~~~~~~~~~~~~~   78 (247)
T 2jah_A            6 QGKVALITGAS-SGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG------AKVHVLELDVADRQGVDAAVAST   78 (247)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEECCCCCHHHHHHHHHHH
Confidence            46778888865 445555544432 25699999999887776665554422      467888888753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        79 ~~~~g~id~lv~nAg~   94 (247)
T 2jah_A           79 VEALGGLDILVNNAGI   94 (247)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              01468999887653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=80.53  E-value=4.8  Score=31.69  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCC-chHHHHHHH-HhCCCcEEEE-EeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         17 GAKVLDIGSGS-GFMSCVFAE-LVGKTGRVFG-VEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        17 ~~~vldiG~G~-G~~~~~l~~-~~~~~~~v~~-~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|.-||||. |......+. . .++.++++ +|.+++..+...+   ..+        +.....|.... .....+|+
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~-~~~~~~vav~d~~~~~~~~~a~---~~g--------~~~~~~~~~~~-l~~~~~D~   74 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNK-IQGVKLVAACALDSNQLEWAKN---ELG--------VETTYTNYKDM-IDTENIDA   74 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHT-CSSEEEEEEECSCHHHHHHHHH---TTC--------CSEEESCHHHH-HTTSCCSE
T ss_pred             cceEEEEcCCHHHHHHHHHHHhc-CCCcEEEEEecCCHHHHHHHHH---HhC--------CCcccCCHHHH-hcCCCCCE
Confidence            35799999986 543333333 2 23556654 5999876544322   211        21112232211 12235899


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEE
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~  119 (216)
                      |+...+.......+...|+.|-.+++
T Consensus        75 V~i~tp~~~h~~~~~~al~~G~~v~~  100 (346)
T 3cea_A           75 IFIVAPTPFHPEMTIYAMNAGLNVFC  100 (346)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred             EEEeCChHhHHHHHHHHHHCCCEEEE
Confidence            99887766555666667777655554

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=80.47  E-value=8.5  Score=30.18  Aligned_cols=62  Identities=13%  Similarity=-0.104  Sum_probs=39.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVE-HMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      +.++|-.|+ +|.++..+++.+. .+++|+.++ .+++.++.+.+.+....     ..++.++.+|+...
T Consensus        46 ~k~~lVTGa-s~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~d~  109 (328)
T 2qhx_A           46 VPVALVTGA-AKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-----PNSAITVQADLSNV  109 (328)
T ss_dssp             CCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSSS
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-----CCeEEEEEeeCCCc
Confidence            456666665 4556655555442 356999999 88887776666554111     25688888997643

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=80.40  E-value=2.2  Score=34.26  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .|.+|.-+|.|. |......++.+  +.+|++.|.++...+.+.+.    +        +... .+....   -...|+|
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~----g--------~~~~-~~l~el---l~~aDvV  224 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPF--GCNLLYHDRLQMAPELEKET----G--------AKFV-EDLNEM---LPKCDVI  224 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGG--CCEEEEECSSCCCHHHHHHH----C--------CEEC-SCHHHH---GGGCSEE
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHC--CCEEEEeCCCccCHHHHHhC----C--------CeEc-CCHHHH---HhcCCEE
Confidence            578999998877 55444444444  45899999876433333221    1        2211 111111   1347999


Q ss_pred             EecCCCC----c-hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVP----E-IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~----~-~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.+.+..    + +-....+.+|||++++=+.
T Consensus       225 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  256 (351)
T 3jtm_A          225 VINMPLTEKTRGMFNKELIGKLKKGVLIVNNA  256 (351)
T ss_dssp             EECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred             EECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence            9888763    2 2367778899998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	6e-25
d1r18a_	223	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	9e-22
d1jg1a_	215	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	4e-17
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	8e-16
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-13
d1dl5a1	213	c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt	6e-13
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-12
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	7e-11
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	9e-11
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-09
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-08
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-08
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	5e-08
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	7e-08
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-07
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	2e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	4e-06
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	6e-06
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	3e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	4e-05
d2esra1	152	c.66.1.46 (A:28-179) Putative methyltransferase SP	2e-04
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	4e-04
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.001
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.001
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	0.001
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.001
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	0.001
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	0.002
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	0.004
d2ih2a1	223	c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina	0.004

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 6e-25
 Identities = 61/166 (36%), Positives = 98/166 (59%), Gaps = 2/166 (1%)

Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
              A  +ELL  ++ EGAK LD+GSGSG ++  FA +VG TG+V G++H++E  +D+   
Sbjct: 61  HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 120

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG 120
           V +  P LL+ GR+ L   DGR G   +AP+DAI++    P +P +++ QLKPGGRL+  
Sbjct: 121 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 180

Query: 121 VGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNW 166
           VG +     +   D+ +DG   +   +    ++ PL + ++Q   W
Sbjct: 181 VGPAGGNQMLEQYDKLQDG-SIKMKPLMGVIYV-PLTDKEKQWSRW 224

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 87.2 bits (215), Expect = 9e-22
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)

Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTG-----RVFGVEHMREQCE 55
              A  +E L   ++ GA++LD+GSGSG+++  F   +   G     R+ G+EH  E   
Sbjct: 65  HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 124

Query: 56  DAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGG 115
            +   +      +L+ G+L +   DGR G    AP++AI++    P+ P  ++ QL  GG
Sbjct: 125 RSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGG 184

Query: 116 RLVCGVGKSKSYHRMTVIDRSEDGT 140
           RL+  VG       M   D+  +G 
Sbjct: 185 RLIVPVGPDGGSQYMQQYDKDANGK 209

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 74.5 bits (182), Expect = 4e-17
 Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 20  VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR 79
           +L++G+GSG+ + + +E+V         +    +         +   +      +H+   
Sbjct: 82  ILEVGTGSGWNAALISEIVKT-------DVYTIERIPELVEFAKRNLERAGVKNVHVILG 134

Query: 80  DGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDG 139
           DG  G   +AP+D I ++   P+IP  ++ QLK GG+L+  VG    +  +  + +++DG
Sbjct: 135 DGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDG 194

Query: 140 THFQKYE 146
              + + 
Sbjct: 195 IKIKNHG 201

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 71.9 bits (176), Expect = 8e-16
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A+I+   +  I  GA+VL+ G+GSG ++      VG  G+V   E   +  E A   V  
Sbjct: 86  AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG 143

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVP-EIPYSILLQLKPGGRLVC 119
                       L   D     L     D   L    P E+  ++   L  GG L+ 
Sbjct: 144 CYGQPP--DNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMV 198

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
            I+ +++  I  G  VL+ GSGSG MS   ++ VG  GRV   E  ++  + A +     
Sbjct: 89  MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW 146

Query: 65  RPDLL------NDGRLHLRCRDGRTGL--LHQAPFDAIYLSTYVP-EIPYSILLQLKPGG 115
           R              +    +D       +    FDA+ L    P          LK GG
Sbjct: 147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGG 206

Query: 116 RLVC 119
               
Sbjct: 207 VCAV 210

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.1 bits (152), Expect = 6e-13
 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 19  KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC 78
           +VL+IG G+G+ + V + +VG+ G V  VE+ R+ CE A   V R+  +      +   C
Sbjct: 78  RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVC 132

Query: 79  RDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSED 138
            DG  G+   +P+D I+++  V E+P +   QLK GGR++  +    S  +   + + +D
Sbjct: 133 GDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKD 192

Query: 139 GTHFQKY 145
                 Y
Sbjct: 193 PYLVGNY 199

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 11  EPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLN 70
           E  + +G KVL+IG+G G+ + + AE+V    +V  VE   +    A +        L  
Sbjct: 65  ELDLHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKL-------LSY 114

Query: 71  DGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRM 130
              + L   DG  G   + P+D + +    P +      QLK GG ++  +G  +   ++
Sbjct: 115 YNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRV-QKL 173

Query: 131 TVIDRSEDGTHFQKYE 146
             + +  +    +   
Sbjct: 174 YKVIKKGNSPSLENLG 189

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 57.8 bits (139), Expect = 7e-11
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           + II      ++ G  +L++G GSG MS      +   G +  VE   +  + A + +  
Sbjct: 75  SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE 132

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC 119
                 + G +     D    +  Q     I            I   +KPG     
Sbjct: 133 ----FYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATF 184

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 57.8 bits (139), Expect = 9e-11
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           + I  +L+  ++EG +++D G GSG M  V A  VG +G+VF  E   E  + A   + +
Sbjct: 93  SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 150

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC 119
                    R+ ++ RD   G   +                      LK GGR   
Sbjct: 151 ----WGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFAT 202

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 5e-09
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 14/157 (8%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE----HMREQCEDAWE 59
           A++I+ +  K+ +    +D+GSG G +  +           +GVE      +       E
Sbjct: 141 AQMIDEI--KMTDDDLFVDLGSGVGQV-VLQVAAATNCKHHYGVEKADIPAKYAETMDRE 197

Query: 60  TVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA-------IYLSTYVPEIPYSILLQLK 112
               ++          L   D  +    +   +              V          +K
Sbjct: 198 FRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK 257

Query: 113 PGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISL 149
            GGR+V     +    R+   + S+ GT  +  E+S 
Sbjct: 258 EGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSP 294

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A +  +L  +++ G ++LD+GSGSG M C +A   G      G++        A      
Sbjct: 23  ATLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEE 78

Query: 64  -IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121
               + ++                  A   A +++         +   LKPGG ++ G 
Sbjct: 79  LGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDG 72
           KI +   ++D G G G++  V   L+ +  +  G++       +A E    +  D     
Sbjct: 24  KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 83

Query: 73  RLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC 119
                        +       +   T    +   ++  +K GG+++C
Sbjct: 84  GDATEIELNDKYDIAIC-HAFLLHMTTPETMLQKMIHSVKKGGKIIC 129

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
             I+ L EP   +    +D+G G+G ++    EL G+  RV+ ++   E        + R
Sbjct: 23  CLIMCLAEPG--KNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTTEMNLQR 77

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLS---TYVPEIPYSILLQLKPGGRLV 118
                     + L   D    L      D   +      + EI   I  +LKPGGR++
Sbjct: 78  HGL----GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRII 131

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 48.9 bits (115), Expect = 7e-08
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 6/117 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A+++++    ++   +VLD+ +G G ++  FA  V K   V   +   +  + A   +  
Sbjct: 5   AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEG 59

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVC 119
                +   +             H             P          LK GG+L+ 
Sbjct: 60  NGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 116

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 16/129 (12%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           + + +    ++++G   +D+GSG G      A   G     FG E M +  +        
Sbjct: 206 SDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEE 262

Query: 64  IRPDLLNDGRLHLRCR-DGRTGLLHQAPFDA---------IYLSTYVPEIP---YSILLQ 110
           ++      G          +   +                +    +  ++      IL  
Sbjct: 263 LKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQT 322

Query: 111 LKPGGRLVC 119
            K G +++ 
Sbjct: 323 AKVGCKIIS 331

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           I+ G  VL +G  SG  +   +++VG  G++FG+E       +    V   R    N   
Sbjct: 71  IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVP 126

Query: 74  LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLVC 119
           +                 D I+     P     ++      LK GG  + 
Sbjct: 127 ILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMI 176

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE-HMREQCEDAWETVM 62
             +I+  E   +   +VLDIG+G+G  +  F+  V +     GV+         +     
Sbjct: 6   GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQE 60

Query: 63  RIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC 119
           +   ++                        A +  + V +    +   LK  GR + 
Sbjct: 61  KGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 117

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 6e-06
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
           ++ A + +L E    +   VLDIG G G+ +  FA+        FG++  +   + A + 
Sbjct: 69  LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADA-LPEITTFGLDVSKVAIKAAAKR 127

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC 119
             ++                           DA  +  Y P     +   +KPGG ++ 
Sbjct: 128 YPQVTF----------CVASSHRLPFSDTSMDA-IIRIYAPCKAEELARVVKPGGWVIT 175

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 14  IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGR 73
           I+  +K+L +G+ +G      A++  K   V+ +E+      +  +        +   G 
Sbjct: 72  IKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAERENIIPILGD 130

Query: 74  LHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC 119
            +               ++ +        +  +    LK GG  + 
Sbjct: 131 ANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 19/117 (16%), Positives = 35/117 (29%)

Query: 5   RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI 64
            IIE            LD+  G+G ++         T  V   + M  + E+ + +    
Sbjct: 26  FIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK 85

Query: 65  RPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV 121
                 D       R            + I  S  + +   ++   LK GG  +  +
Sbjct: 86  PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 3/116 (2%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           I  ++ P    G +VLD+ +GSG ++            +       +        + +  
Sbjct: 5   IFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE 63

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ--LKPGGRLVC 119
                      R  D  TG       D  Y    +     ++  +  L     +VC
Sbjct: 64  NRFTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVC 119

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 22/164 (13%), Positives = 43/164 (26%), Gaps = 17/164 (10%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           ++    P       +L++GS  G  +    E       +  VE   E    A   +    
Sbjct: 11  MVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKDGI 66

Query: 66  PDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSK 125
             + +        R     +L        ++   V  +       L  GGRL      + 
Sbjct: 67  TYIHSRFEDAQLPRRYDNIVLTHVLE---HIDDPVALLKRINDDWLAEGGRLFLVCPNAN 123

Query: 126 SYHRMTVID----------RSEDGTHFQKYEISLENFINPLINA 159
           +  R   +              +  H  +   +L+        A
Sbjct: 124 AVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA 167

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 24/163 (14%), Positives = 44/163 (26%), Gaps = 21/163 (12%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAEL-----VGKTGRVFGVEHMREQCEDAW 58
             II  +    +   K+L IG G+G +             G       VE   EQ     
Sbjct: 29  PGIIGRI-GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 87

Query: 59  ETVMRIRPDLLNDGRLHLRC----RDGRTGLLHQAPFDAIYLSTYVPEIP------YSIL 108
           E V +I          H       +           +D I++   +  +           
Sbjct: 88  ELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFH 147

Query: 109 LQLKPGGRLVCGV-----GKSKSYHRMTVIDRSEDGTHFQKYE 146
             L    +++  V     G  K + +       +D   +   +
Sbjct: 148 SLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSD 190

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 35/218 (16%)

Query: 6   IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
           ++ LL        +VLD+  G+G  S +  E   +   V  V+   +  + A +     R
Sbjct: 48  LLGLLRQH--GCHRVLDVACGTGVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRR 102

Query: 66  PDLLNDGRL--HLRCRDGRTGLLHQAPFDAIYLSTYV------PEIPYSILLQ------- 110
            +   D  +            +     FDA+             +   S           
Sbjct: 103 KEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162

Query: 111 -LKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADEQN-----D 164
            ++PGG LV      ++Y  +     +  G +        ++    ++  + +      D
Sbjct: 163 MVRPGGLLVIDH---RNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLD 219

Query: 165 NWLYQQSRSEDGT------HFQKYEISLENFINPLINA 196
             +       DG           Y   L +F   +  A
Sbjct: 220 YTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEA 257

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 16/150 (10%)

Query: 4   ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR 63
           A I++    K++   +VL +G+ SG      A++V   G ++ VE+  +  E   E V  
Sbjct: 44  AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE 102

Query: 64  IRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQ----LKPGGRLVC 119
                 N   L                 D IY           +       LK  G +V 
Sbjct: 103 RN----NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVI 158

Query: 120 GVGKSKSYHRMTVIDRSEDGTHFQKYEISL 149
            V       +   ID + +     K  +  
Sbjct: 159 MV-------KARSIDSTAEPEEVFKSVLKE 181

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 28/189 (14%), Positives = 53/189 (28%), Gaps = 22/189 (11%)

Query: 9   LLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDL 68
           L+    + G  VLD+G G G     +       G  +GV+       DA      ++   
Sbjct: 17  LIRLYTKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRF 74

Query: 69  LNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYH 128
               R                   + +   Y      S+ +  +   R +          
Sbjct: 75  KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLR--------- 125

Query: 129 RMTVIDRSEDGTHFQKYEISLENFINPLINADEQNDNWLYQQSRSEDGTHF--QKYEISL 186
                     G +F     S +  +         ND +  +  + ED      ++Y  +L
Sbjct: 126 ---------PGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 176

Query: 187 ENFINPLIN 195
            + +N  I 
Sbjct: 177 LDSVNNCIE 185

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 7/118 (5%)

Query: 1   MQQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWET 60
                 ++ L   ++ G KVLD+G+GSG ++    +L GK     GV+        A   
Sbjct: 105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEAN 161

Query: 61  VMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
             R         R      +            A   +     +       L PGGR +
Sbjct: 162 AKRNGVRP----RFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 12  PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVE----HMREQCEDAWETVMRIRPD 67
             + +   VLD+GSG+G +    A+   +  +V G+E                +  +   
Sbjct: 29  RHLFKDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTI 86

Query: 68  LLNDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLV 118
           +           +    ++ +     ++  + +  + ++    L P G + 
Sbjct: 87  IKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 14/122 (11%), Positives = 26/122 (21%), Gaps = 19/122 (15%)

Query: 13  KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDA-----WETVMRIRPD 67
            +  GA+VL    G        +    +   V G E      E        +  +  + D
Sbjct: 17  NVVPGARVLVPLCGKSQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQPHITSQGD 73

Query: 68  LLNDGRLHLRCRDGRTGLLHQAP---FDAIYLSTYV--------PEIPYSILLQLKPGGR 116
                   +    G    L         A Y    +              +   +     
Sbjct: 74  FKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 133

Query: 117 LV 118
            +
Sbjct: 134 GL 135

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 6  IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIR 65
          ++ L E     G +VL+     G     F E  G   R  GVE   +  +        + 
Sbjct: 11 MVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILA 68

Query: 66 PDLLND 71
            LL +
Sbjct: 69 DFLLWE 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.94
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.89
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.88
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.86
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.85
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.82
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.82
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.81
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.79
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.78
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.78
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.77
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.75
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.74
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.73
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.73
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.72
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.72
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.71
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.71
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.71
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.7
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.7
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.7
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.7
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.7
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.69
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.69
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.68
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.67
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.65
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.62
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.61
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.59
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.59
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.58
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.58
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.56
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.54
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.51
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.48
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.48
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.48
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.47
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.46
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.45
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.43
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.43
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.42
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.42
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.42
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.4
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.38
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.34
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.3
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.3
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.28
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.25
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.25
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.22
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.22
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.15
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.11
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.07
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.07
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.04
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.03
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.01
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.99
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.95
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.94
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.94
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.91
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.88
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.87
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.86
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.86
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.84
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.84
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.82
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.81
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.77
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.66
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.63
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.61
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.54
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.52
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.43
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.42
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.3
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.26
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.21
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.21
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.2
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.16
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.14
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	98.11
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.97
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.97
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.96
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.87
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.86
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.79
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.78
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.76
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.73
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.58
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.55
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.5
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.34
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.33
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.3
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.29
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.26
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.17
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.15
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.97
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.66
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.48
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.47
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.91
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.7
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	95.63
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.3
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.22
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.08
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.07
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.82
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.58
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.84
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	93.41
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.51
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.04
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.03
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.91
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.36
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.24
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	91.24
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.9
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.89
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.78
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.56
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.54
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.49
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.39
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.15
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.02
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.85
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.64
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.33
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.14
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.94
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.93
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	88.79
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	87.56
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	87.52
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	87.33
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	86.61
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	86.09
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.08
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.82
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.79
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.62
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	85.29
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.1
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	85.02
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.89
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	84.71
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.5
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.3
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	84.22
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.64
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	83.37
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	83.17
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	83.0
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	82.5
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	81.73
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.14
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	80.97
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	80.66
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	80.66
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	80.64
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.63
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	80.6
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.24

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.1e-26  Score=172.05  Aligned_cols=163  Identities=38%  Similarity=0.671  Sum_probs=142.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |++.+++.|...+++|.+|||+|||+|+.+..+++..++.++|+++|.++++++.|++++.+.+++.+...++.+..+|.
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            67889998877789999999999999999999999988888999999999999999999887654333456889999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceeccccccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLINADE  161 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .......++||+|++....++++..+.+.|||||++++.+.+....+.+..+.+..++.+......++.  |.|+.+...
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~--fvPl~~~~~  219 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVI--YVPLTDKEK  219 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEEC--CCBCCCHHH
T ss_pred             ccccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEE--EECCCCchh
Confidence            877777789999999999999999999999999999999887776677888888888888888999999  999988777


Q ss_pred             cccch
Q psy14962        162 QNDNW  166 (216)
Q Consensus       162 ~~~~~  166 (216)
                      +..+|
T Consensus       220 ~~~~~  224 (224)
T d1i1na_         220 QWSRW  224 (224)
T ss_dssp             HCCCC
T ss_pred             hccCC
Confidence            76655

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=7.4e-23  Score=153.93  Aligned_cols=148  Identities=28%  Similarity=0.471  Sum_probs=123.1

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |++.+++.+.  +++|.+|||+|||+|+.+..+++.+++.+.|+++|.++++++.|++++...+     ..++.++++|.
T Consensus        63 ~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-----~~n~~~~~~d~  135 (213)
T d1dl5a1          63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIFVCGDG  135 (213)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCG
T ss_pred             hhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-----ccccccccCch
Confidence            5677888875  7999999999999999999999998888899999999999999999998865     47899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN  158 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      .......++||+|++....++++..+.+.|||||++++...............+..+..+......+.+  |.|+.+
T Consensus       136 ~~~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Fvpl~g  210 (213)
T d1dl5a1         136 YYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKKDPYLVGNYKLETR--FITAGG  210 (213)
T ss_dssp             GGCCGGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEETTEEEEEEEEECC--CCBCCG
T ss_pred             HHccccccchhhhhhhccHHHhHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEEeCCeEEEEEEeeEE--EEECCC
Confidence            776666788999999999999999999999999999998765543333444444455666666777777  888765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=1.6e-22  Score=152.61  Aligned_cols=153  Identities=29%  Similarity=0.508  Sum_probs=128.4

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCC-----CcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEE
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGK-----TGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHL   76 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~   76 (216)
                      |++.+++.+...++++.+|||||||+|+.+..+++.+++     +.+|+++|.++++++.|++++...+.+.....|+.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            577888888656899999999999999999999988643     248999999999999999876543211111368999


Q ss_pred             EeccCCCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecc
Q psy14962         77 RCRDGRTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPL  156 (216)
Q Consensus        77 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (216)
                      +.+|........++||+|++....+.++..+.+.|+|||++++........+.+..+.+..++.+.....+.+.  |.|+
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~--FvPL  223 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVM--YVPL  223 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEEC--CCCC
T ss_pred             EecccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEE--eecC
Confidence            99999877777789999999999999999999999999999999887666678888999888888888888888  8875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=8.9e-21  Score=141.96  Aligned_cols=145  Identities=27%  Similarity=0.477  Sum_probs=125.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |++.+++.+.  ++++.+|||||||+|+.+..+++..+  .+|+++|.++.+++.|++++.+.+     ..|+.++++|.
T Consensus        66 ~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g-----~~nv~~~~gd~  136 (215)
T d1jg1a_          66 MVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDG  136 (215)
T ss_dssp             HHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCG
T ss_pred             hHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcC-----CceeEEEECcc
Confidence            6788888886  89999999999999999999998874  489999999999999999999866     48999999999


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN  158 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      .......++||.|++....+.++..+.+.|+|||++++........+.+..+.+.. ..+.....+++.  |.|+.+
T Consensus       137 ~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~~-~~~~~~~l~~v~--fvPl~g  210 (215)
T d1jg1a_         137 SKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTK-DGIKIKNHGGVA--FVPLIG  210 (215)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSSSCEEEEEEEEET-TEEEEEEEEEEC--CCBCBS
T ss_pred             ccCCcccCcceeEEeecccccCCHHHHHhcCCCCEEEEEEccCCccEEEEEEEEEC-CEEEEEEEccEE--EEcCCC
Confidence            88777788999999999999999999999999999999887776556666666544 447778888888  999875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.85  E-value=1.2e-20  Score=142.10  Aligned_cols=141  Identities=21%  Similarity=0.335  Sum_probs=118.8

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      +.+.+++.+.  +++|.+|||+|||+|+.+..+++..   .+|+++|.++++++.|+++...       ..|+.++.+|.
T Consensus        58 ~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~-------~~nv~~~~~d~  125 (224)
T d1vbfa_          58 LGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY-------YNNIKLILGDG  125 (224)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT-------CSSEEEEESCG
T ss_pred             hHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc-------ccccccccCch
Confidence            4567777775  7899999999999999999999873   4999999999999999988765       36899999998


Q ss_pred             CCCCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeecCCCCcceEEEEEecCCCceeeeeeeeeeeceecccc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSKSYHRMTVIDRSEDGTHFQKYEISLENFINPLIN  158 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (216)
                      .......++||+|++....++++..+.+.|+|||++++...... .+.+..+.+. +..+......++.  |.|+.+
T Consensus       126 ~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pvg~~~-~q~l~~i~k~-~~~~~~~~l~~v~--F~pl~g  198 (224)
T d1vbfa_         126 TLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGR-VQKLYKVIKK-GNSPSLENLGEVM--FGRIGG  198 (224)
T ss_dssp             GGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEECSSS-SEEEEEEECC-TTSCEEEEEEEEC--CCBCCS
T ss_pred             hhcchhhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEEcCCC-ceEEEEEEEE-CCceEEEEeeeEE--EEECCC
Confidence            77766678899999999999999999999999999999876543 4667777765 4567777888888  988766

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=6.7e-20  Score=139.58  Aligned_cols=109  Identities=21%  Similarity=0.237  Sum_probs=93.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+.  ++||.+|||+|||+|..+..+++..   .+|+|+|+|+.|++.|++++...+.     +++.++++|+...
T Consensus         7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~-----~~~~~~~~d~~~~   76 (234)
T d1xxla_           7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQGTAESL   76 (234)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEECBTTBC
T ss_pred             HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccc-----ccccccccccccc
Confidence            3445553  7899999999999999999999873   4999999999999999999888663     6899999999877


Q ss_pred             CCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +.++++||+|++...+++      +++++.++|||||++++....
T Consensus        77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence            667789999999998876      468999999999999886543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.82  E-value=7.8e-20  Score=138.69  Aligned_cols=110  Identities=15%  Similarity=0.224  Sum_probs=93.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ++++++.+.  ++++.+|||||||+|..+..+++.   +.+|+|+|+|+.+++.|++++...+     .+++.+.++|+.
T Consensus         4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~-----~~~i~~~~~d~~   73 (231)
T d1vl5a_           4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAE   73 (231)
T ss_dssp             HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-
T ss_pred             HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccc-----cccccccccccc
Confidence            356677764  789999999999999999999887   3499999999999999999988755     378999999998


Q ss_pred             CCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+.+.++||+|++...+++      +++++.++|||||++++...
T Consensus        74 ~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          74 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            76666789999999999876      46899999999999998643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.81  E-value=4.5e-20  Score=141.53  Aligned_cols=111  Identities=18%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+.+.+.....++.+|||+|||+|.++..+++.   +.+|+|+|+|++|++.|+++....+      .+++++++|+..
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~~~   95 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDISN   95 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGGG
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccC------ccceeeccchhh
Confidence            3445555444455689999999999999999987   4599999999999999999887754      479999999875


Q ss_pred             CCCCCCCccEEEecC-CCCc---------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLST-YVPE---------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~-~~~~---------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ... .++||+|+|.. .+.+         +++++++.|+|||.+++.+.++
T Consensus        96 ~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_          96 LNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             hcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            543 46899999853 3322         5689999999999999877654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=2.4e-19  Score=135.21  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=91.7

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +...+...++++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|++++...+      .++.++..|+....
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~~l~   97 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKLS   97 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSCC
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcccc------cccccccccccccc
Confidence            34445456788899999999999999999986   4599999999999999999887754      46788999988777


Q ss_pred             CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         86 LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ..+++||+|++..++++        +++++.++|||||++++...+
T Consensus        98 ~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1          98 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            67789999999998866        357888999999999987655

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.1e-19  Score=135.53  Aligned_cols=110  Identities=23%  Similarity=0.261  Sum_probs=92.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      +.+.+.+.  +.||.+|||||||+|..+..+++..  +.+|+|+|+|+.+++.|+++....++    .++++++.+|+..
T Consensus        23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl----~~~v~~~~~d~~~   94 (245)
T d1nkva_          23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGV----SERVHFIHNDAAG   94 (245)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEESCCTT
T ss_pred             HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhc----cccchhhhhHHhh
Confidence            44555553  7899999999999999999998875  35999999999999999999888764    3679999999986


Q ss_pred             CCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         84 GLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .. .+++||+|++...+.+      ++++++++|||||++++...
T Consensus        95 ~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          95 YV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             CC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             cc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence            53 4678999999887755      56889999999999999653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=6e-19  Score=135.60  Aligned_cols=118  Identities=25%  Similarity=0.306  Sum_probs=100.8

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      +.++..+.  ++||.+|||+|||+|.++..+++.+++.++|+++|.++++++.|++++...+.  ....++.+.++|...
T Consensus        86 s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          86 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--QPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT--SCCTTEEEECSCGGG
T ss_pred             HHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc--CCCceEEEEeccccc
Confidence            45566664  79999999999999999999999999989999999999999999998876421  124789999999876


Q ss_pred             CCCCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ...+++.||.|+++.+-++ .+..+.++|||||++++.+++..
T Consensus       162 ~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~  204 (264)
T d1i9ga_         162 SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVT  204 (264)
T ss_dssp             CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             ccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccC
Confidence            6666789999999988776 67899999999999999887764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.78  E-value=1.3e-18  Score=135.97  Aligned_cols=104  Identities=16%  Similarity=0.086  Sum_probs=91.0

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|||||||+|..+..++++.+  .+|+|+|+++.+++.|+++....++    ..++.+.++|+...+.++++||
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl----~~~v~~~~~d~~~l~~~~~sfD  137 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL----ADNITVKYGSFLEIPCEDNSYD  137 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC----TTTEEEEECCTTSCSSCTTCEE
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccc----cccccccccccccccccccccc
Confidence            367899999999999999999998864  5999999999999999999988775    3689999999987776778999


Q ss_pred             EEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         93 AIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        93 ~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      +|++...+.+      ++.++.++|||||++++..+
T Consensus       138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999988765      45899999999999998654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=2.5e-18  Score=131.79  Aligned_cols=101  Identities=21%  Similarity=0.200  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|++++...+      .++.+.++|+.....+ ++||+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~l~~~-~~fD~  108 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLEIAFK-NEFDA  108 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGGCCCC-SCEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhccc---ceEEEEEeecccccccccccccccc------ccchheehhhhhcccc-cccch
Confidence            356678999999999999999987   4599999999999999999988754      4799999998865543 58999


Q ss_pred             EEecC-CCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLST-YVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~-~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++.. .+.+        ++++++++|||||++++...+.
T Consensus       109 I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            99864 3322        4688999999999999976553

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=2e-18  Score=131.82  Aligned_cols=113  Identities=20%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .++..+  .++||.+|||+|||+|.++..+++.+++.++|+++|.++++++.|++++.+.+.    ..++.+...|+...
T Consensus        76 ~Ii~~l--~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~----~~nv~~~~~Di~~~  149 (250)
T d1yb2a1          76 YIIMRC--GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADF  149 (250)
T ss_dssp             -----C--CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTC
T ss_pred             HHHHHc--CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC----CCceEEEEeeeecc
Confidence            344444  479999999999999999999999998888999999999999999999987542    47899999998755


Q ss_pred             CCCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCC
Q psy14962         85 LLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      . .++.||.|+++.+-++ .++.+.++|||||++++.+++.
T Consensus       150 ~-~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         150 I-SDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             C-CSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             c-ccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCc
Confidence            4 4678999999877665 6799999999999999987765

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.75  E-value=3.2e-18  Score=125.77  Aligned_cols=112  Identities=22%  Similarity=0.233  Sum_probs=92.7

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..++..+.  +.+|++|||+|||+|.++..+++.   ..+|+++|.++.+++.|+++++..++    .++++++++|+..
T Consensus        23 ~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl----~~~v~~~~gda~~   93 (186)
T d1l3ia_          23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGL----GDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC----CTTEEEEESCHHH
T ss_pred             HHHHHhcC--CCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCC----CcceEEEECchhh
Confidence            34555554  689999999999999999999876   34999999999999999999999775    3689999999875


Q ss_pred             CCCCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         84 GLLHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .......||.|++......   +++.+.+.|||||++++.....
T Consensus        94 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_          94 ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             HHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             cccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeecc
Confidence            5555578999999987654   5678889999999999876543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=1.2e-17  Score=126.23  Aligned_cols=112  Identities=17%  Similarity=0.209  Sum_probs=88.3

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      +...+..+++++.+|||+|||+|..+..+++... ++.+|+|+|+|+.|++.|++++...+.    ..++.+..+|....
T Consensus        29 i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~----~~~~~~~~~d~~~~  104 (225)
T d1im8a_          29 IGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPVEILCNDIRHV  104 (225)
T ss_dssp             HHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC----SSCEEEECSCTTTC
T ss_pred             HHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc----cchhhhccchhhcc
Confidence            3344445678999999999999999999998643 567999999999999999999876442    35677777776543


Q ss_pred             CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecC
Q psy14962         85 LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                        +.+.+|+|++...+++        +++++++.|||||.+++....
T Consensus       105 --~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         105 --EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             --CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence              3456899998877654        468999999999999997543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.1e-18  Score=129.26  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..++.+|||+|||+|..+..++....  .+|+|+|+|++|++.|++++...+     ..++++.++|+.......++||+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~-----~~~~~f~~~d~~~~~~~~~~fD~  130 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEG-----KRVRNYFCCGLQDFTPEPDSYDV  130 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGG-----GGEEEEEECCGGGCCCCSSCEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccc-----ccccccccccccccccccccccc
Confidence            35678999999999999988876532  489999999999999999887644     35789999999876666789999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++        +++.++++|+|||.+++...
T Consensus       131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            999988865        35788899999999998643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=2.4e-17  Score=127.14  Aligned_cols=116  Identities=28%  Similarity=0.422  Sum_probs=97.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      ++.|+..+.  ++||.+|||+|||+|.++..+|+.++++++|+++|.++++++.|++++...++    ..++.+...|..
T Consensus        92 ~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~----~~~v~~~~~d~~  165 (266)
T d1o54a_          92 SSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERVTIKVRDIS  165 (266)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGEEEECCCGG
T ss_pred             HHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc----ccCcEEEecccc
Confidence            345666664  89999999999999999999999988888999999999999999999998764    367888888865


Q ss_pred             CCCCCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ... ....||.|+.+.+-++ .++++.++|||||++++.+++..
T Consensus       166 ~~~-~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~  208 (266)
T d1o54a_         166 EGF-DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTN  208 (266)
T ss_dssp             GCC-SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred             ccc-cccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCccc
Confidence            433 3567999999888765 77999999999999999877653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.3e-17  Score=129.47  Aligned_cols=121  Identities=26%  Similarity=0.313  Sum_probs=96.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------CCCCCCeEE
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD------LLNDGRLHL   76 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------~~~~~~~~~   76 (216)
                      ++.|+..+.  +.||.+|||+|||+|.++..+|+.+++.++|+++|+++++++.|++++...+..      .....++.+
T Consensus        87 ~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          87 INMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             HHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            356677765  899999999999999999999999998899999999999999999998764310      112468999


Q ss_pred             EeccCCCCC--CCCCCccEEEecCCCCc-hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         77 RCRDGRTGL--LHQAPFDAIYLSTYVPE-IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        77 ~~~d~~~~~--~~~~~~D~i~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .+.|+....  .....||.|+++.+-++ .+.++.++|||||++++.+++-.
T Consensus       165 ~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~  216 (324)
T d2b25a1         165 IHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNIT  216 (324)
T ss_dssp             EESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred             EecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence            999986433  23467999999887765 77999999999999998776653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=7.6e-17  Score=125.86  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +++|.+|||||||.|..+..+++..+  ++|+|+++|+++++.++++....++    ..++.+...|..
T Consensus        50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l----~~~v~~~~~d~~  121 (291)
T d1kpia_          50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS----PRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCC----SSCEEEEECCGG
T ss_pred             HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhcc----chhhhhhhhccc
Confidence            455666664  78999999999999999999998874  5999999999999999999988765    367888888854


Q ss_pred             CCCCCCCCccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeec
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .   .+++||.|++..++++               +++.+.++|||||++++.+.
T Consensus       122 ~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         122 E---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             G---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             c---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence            2   3578999999888865               35789999999999999654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.71  E-value=3.4e-17  Score=125.75  Aligned_cols=107  Identities=21%  Similarity=0.286  Sum_probs=86.8

Q ss_pred             ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCC
Q psy14962         12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAP   90 (216)
Q Consensus        12 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~   90 (216)
                      ..++++.+|||+|||+|..+..+++..  ..+|+|+|+|+.|++.|+++....+.    ..++.+.++|+..... ..++
T Consensus        20 ~~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~----~~~v~f~~~D~~~~~~~~~~~   93 (252)
T d1ri5a_          20 LYTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKE   93 (252)
T ss_dssp             HHCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCC----SSEEEEEESCTTTSCCCCSSC
T ss_pred             HhCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCC----CcceEEEEcchhhhccccccc
Confidence            346789999999999999998888762  24899999999999999998876431    3478899999864443 4568


Q ss_pred             ccEEEecCCCCch----------HHHHHhcCCCCeEEEEeecCC
Q psy14962         91 FDAIYLSTYVPEI----------PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        91 ~D~i~~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ||+|++...++++          +..+.++|+|||++++++++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            9999998888653          467889999999999987664

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=2.4e-17  Score=125.62  Aligned_cols=101  Identities=24%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             hcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962         10 LEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        10 l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      +...+.++.+|||+|||+|..+..+++.   +.+|+|+|+|+.|++.|+++.           ...++.+|+.....+++
T Consensus        36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~-----------~~~~~~~~~~~l~~~~~  101 (246)
T d2avna1          36 LEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG-----------VKNVVEAKAEDLPFPSG  101 (246)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT-----------CSCEEECCTTSCCSCTT
T ss_pred             HHHhcCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc-----------ccccccccccccccccc
Confidence            4445677889999999999999999876   459999999999999998752           12367788877666678


Q ss_pred             CccEEEecC-CCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLST-YVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~-~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||+|++.. .+++      +++++.++|||||.+++++++.
T Consensus       102 ~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         102 AFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             CEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             cccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            999999864 4443      4688999999999999987654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=6.5e-17  Score=125.28  Aligned_cols=100  Identities=19%  Similarity=0.300  Sum_probs=86.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..+++.. ++..++|+|+|+.+++.|+++.          .++.+..+|+...+..+++||+|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~~l~~~~~sfD~v  151 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHRLPFSDTSMDAI  151 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc----------ccccceeeehhhccCCCCCEEEE
Confidence            467899999999999999999885 5679999999999999988752          57899999998877778899999


Q ss_pred             EecCCCCchHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         95 YLSTYVPEIPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        95 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      ++.....+ ++++.++|||||++++.++.+..
T Consensus       152 ~~~~~~~~-~~e~~rvLkpgG~l~~~~p~~~~  182 (268)
T d1p91a_         152 IRIYAPCK-AEELARVVKPGGWVITATPGPRH  182 (268)
T ss_dssp             EEESCCCC-HHHHHHHEEEEEEEEEEEECTTT
T ss_pred             eecCCHHH-HHHHHHHhCCCcEEEEEeeCCcc
Confidence            99877665 57899999999999999987754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.70  E-value=1.2e-16  Score=117.93  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +++.+.  ..++.+|||+|||+|.++..+++.   ..+|+++|+|+.+++.+++++..+++   ...++++..+|.... 
T Consensus        44 Li~~l~--~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l---~~~~i~~~~~d~~~~-  114 (194)
T d1dusa_          44 LVENVV--VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLYEN-  114 (194)
T ss_dssp             HHHHCC--CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTTTT-
T ss_pred             HHHhCC--cCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCC---ccceEEEEEcchhhh-
Confidence            344443  567899999999999999998876   34999999999999999999987663   234688999998753 


Q ss_pred             CCCCCccEEEecCCCCc-------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLSTYVPE-------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~-------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ..+++||+|+++.+++.       +++.+.+.|+|||.+++.+...
T Consensus       115 ~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            34678999999988754       4577889999999998865443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=1.1e-16  Score=124.60  Aligned_cols=107  Identities=17%  Similarity=0.174  Sum_probs=87.4

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  +++|.+|||||||+|.++..+++..+  .+|+|+|+|+++++.|+++..+.++    ..++.+...|...
T Consensus        42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l----~~~~~~~~~d~~~  113 (280)
T d2fk8a1          42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDT----NRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCC----SSCEEEEESCGGG
T ss_pred             HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhcc----ccchhhhhhhhhh
Confidence            44455553  78999999999999999999998864  5999999999999999999988664    3567777777543


Q ss_pred             CCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         84 GLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      .   .++||.|++...+++        +++.+.++|||||++++..
T Consensus       114 ~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         114 F---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             C---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             h---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            2   468999999888865        3588999999999999964

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.1e-17  Score=128.09  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=84.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+++.+....++|.+|||+|||+|.+++.+++.   +.+|+|+|+|+.+++.|++++..++      .++++..+|....
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~------~~~~~~~~d~~~~  179 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNG------VRPRFLEGSLEAA  179 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTT------CCCEEEESCHHHH
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcC------CceeEEecccccc
Confidence            345555555689999999999999999987765   4599999999999999999998866      3567888886533


Q ss_pred             CCCCCCccEEEecCCCC---chHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVP---EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~---~~~~~~~~~L~~gG~lv~~  120 (216)
                       ...++||+|+++...+   .+++.+.++|||||+++++
T Consensus       180 -~~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         180 -LPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             -GGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -ccccccchhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence             3356899999875543   3557888999999999985

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=1.7e-16  Score=117.42  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.+ .+|||+|||+|..+..++++   +.+|+|+|+|+.+++.++++....+     ..++.+...|+..... +++||+
T Consensus        29 ~~~-grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~d~~~~~~-~~~fD~   98 (198)
T d2i6ga1          29 VAP-GRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEG-----LDNLQTDLVDLNTLTF-DGEYDF   98 (198)
T ss_dssp             SCS-CEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT-----CTTEEEEECCTTTCCC-CCCEEE
T ss_pred             CCC-CcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcc-----ccchhhhheecccccc-cccccE
Confidence            444 59999999999999999987   4599999999999999999888755     3678999999875544 578999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++        +++.+.++|+|||++++.+...
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            999888765        4578889999999999976654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=7.3e-17  Score=125.82  Aligned_cols=104  Identities=16%  Similarity=0.281  Sum_probs=88.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +..+.+|||+|||+|..+..+++..+.+.+|+|+|+|+.+++.|+++....+      .++++...|+..... .++||+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d~~~~~~-~~~fD~   97 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDATEIEL-NDKYDI   97 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESCTTTCCC-SSCEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------ccccccccccccccc-cCCceE
Confidence            5677899999999999999999887656799999999999999999987643      478999999876544 457999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++...+++      +++++.++|||||.+++..++.
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            999998876      4688999999999999987654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.69  E-value=3.9e-17  Score=125.52  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .++.+|||+|||+|..+..++....  ..|+++|+++.+++.|++++..       ..++++.++|+.......++||+|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~I  162 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc-------cccceeEEccccccccCCCccceE
Confidence            4567999999999999998887643  3899999999999999987654       356889999988666667889999


Q ss_pred             EecCCCCch--------HHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYVPEI--------PYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~  122 (216)
                      ++...++++        ++++++.|+|||.+++...
T Consensus       163 ~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            999998764        5788899999999998654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=2.4e-16  Score=122.63  Aligned_cols=109  Identities=17%  Similarity=0.079  Sum_probs=90.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +++|.+|||||||.|..+..+++..+  ++|+|+++|++.++.|+++....++    .+++++..+|..
T Consensus        51 ~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~----~~~v~~~~~d~~  122 (285)
T d1kpga_          51 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN----LRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC----CSCEEEEESCGG
T ss_pred             HHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhh----hhhhHHHHhhhh
Confidence            344555554  78999999999999999999999874  5999999999999999999888765    478999999975


Q ss_pred             CCCCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..   +++||.|++...+++        +++.+.++|||||++++...
T Consensus       123 ~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         123 QF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             GC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             cc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence            43   357999999888765        45889999999999998543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.68  E-value=2.6e-16  Score=117.28  Aligned_cols=103  Identities=22%  Similarity=0.236  Sum_probs=82.9

Q ss_pred             ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---C
Q psy14962         12 PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---Q   88 (216)
Q Consensus        12 ~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~   88 (216)
                      ..++||.+|||+|||+|..+..+++.++ .++|+|+|+++.+++.++++...       .+++.++..|.......   .
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~-------~~ni~~i~~d~~~~~~~~~~~  123 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKPWKYSGIV  123 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCGGGTTTTC
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhc-------cCCceEEEeeccCcccccccc
Confidence            4578999999999999999999999874 46999999999999999998877       36899999998743322   2


Q ss_pred             CCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeec
Q psy14962         89 APFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        89 ~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~  122 (216)
                      ..+|+|+.+...+.    ++.++.++|||||++++...
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  161 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK  161 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence            45677766544433    56888999999999998653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2.5e-17  Score=122.84  Aligned_cols=93  Identities=20%  Similarity=0.232  Sum_probs=78.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++.+|||+|||+|.++..+.       +++|+|+|+.+++.|++            .++.++++|+......+++||+
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~------------~~~~~~~~d~~~l~~~~~~fD~   94 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARK------------RGVFVLKGTAENLPLKDESFDF   94 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHH------------TTCEEEECBTTBCCSCTTCEEE
T ss_pred             hCCCCeEEEECCCCcccccccc-------eEEEEeCChhhcccccc------------cccccccccccccccccccccc
Confidence            4567799999999999876552       56899999999998875            2588999999877767789999


Q ss_pred             EEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |++...+++      ++.++.++|+|||.+++.+++..
T Consensus        95 I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          95 ALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             EEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             cccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence            999999876      45889999999999999877654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.67  E-value=1.9e-16  Score=119.56  Aligned_cols=110  Identities=18%  Similarity=0.193  Sum_probs=87.7

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |...+++.+.+.. .+.+|||+|||+|..+..+++.   +.+|+|+|+|+++++.|+++.         ..++.++.+|+
T Consensus         7 ~~~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~---------~~~~~~~~~~~   73 (225)
T d2p7ia1           7 MHPFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL---------KDGITYIHSRF   73 (225)
T ss_dssp             HHHHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS---------CSCEEEEESCG
T ss_pred             HHHHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc---------ccccccccccc
Confidence            3445566666544 4669999999999999998876   348999999999999998763         25789999988


Q ss_pred             CCCCCCCCCccEEEecCCCCc------hHHHHH-hcCCCCeEEEEeecCCC
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPE------IPYSIL-LQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~------~~~~~~-~~L~~gG~lv~~~~~~~  125 (216)
                      ..... +++||+|++...+++      .+.++. ++|+|||.+++.+++..
T Consensus        74 ~~~~~-~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~  123 (225)
T d2p7ia1          74 EDAQL-PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN  123 (225)
T ss_dssp             GGCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             ccccc-ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence            75544 578999999999877      346776 78999999999988764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=1.7e-16  Score=116.89  Aligned_cols=108  Identities=12%  Similarity=-0.026  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC-------CCCCCCeEEEeccCCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD-------LLNDGRLHLRCRDGRTGLL   86 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~   86 (216)
                      ++||.+|||+|||+|..+..++++   +.+|+|+|+|+.|++.|+++....+..       .....++.+..+|......
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~   94 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA   94 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence            689999999999999999999998   569999999999999999987542110       0012345677888765442


Q ss_pred             -CCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         87 -HQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        87 -~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                       ....||+|++...+.+        .++.+.++|||||.+++.....
T Consensus        95 ~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          95 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence             2367999999888765        3478889999999988765444

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=7.2e-16  Score=116.03  Aligned_cols=114  Identities=23%  Similarity=0.265  Sum_probs=89.6

Q ss_pred             HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .+.++..+. ..++||.+|||+|||+|..+..+++.+++.+.|+++|+++.+++.+++++..       ..++..+..|.
T Consensus        59 aa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-------~~~~~~i~~d~  131 (227)
T d1g8aa_          59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDA  131 (227)
T ss_dssp             HHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCT
T ss_pred             HHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-------cCCceEEEEEC
Confidence            344444442 2478999999999999999999999999889999999999999999988755       35677788887


Q ss_pred             CCCC---CCCCCccEEEecCCCCc----hHHHHHhcCCCCeEEEEeecC
Q psy14962         82 RTGL---LHQAPFDAIYLSTYVPE----IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        82 ~~~~---~~~~~~D~i~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      ....   .....+|+|+++...+.    ++.++.+.|||||++++++..
T Consensus       132 ~~~~~~~~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka  180 (227)
T d1g8aa_         132 TKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             TCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCcccccccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEEEC
Confidence            5322   22367899998766543    568899999999999987543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.65  E-value=4.3e-16  Score=119.60  Aligned_cols=101  Identities=23%  Similarity=0.187  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +....+|||||||+|..+..++++. |+.+++++|. +++++.++++....++    ..+++++.+|+....  ..+||+
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~rv~~~~~D~~~~~--~~~~D~  149 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL----SDRVDVVEGDFFEPL--PRKADA  149 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTEEEEECCTTSCC--SSCEEE
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhc----ccchhhccccchhhc--ccchhh
Confidence            4567899999999999999999985 5679999998 6789999999888664    478999999986533  246999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++        +++++++.|||||++++...
T Consensus       150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            999988865        35788999999999998643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=2.2e-15  Score=111.64  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=86.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~   93 (216)
                      ++..|||||||+|..+..+|+. .|+..++|+|+++.++..|.++..+.+     .+|+.++.+|+....  ...+++|.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~-----l~Nv~~~~~Da~~l~~~~~~~~~d~  102 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSE-----AQNVKLLNIDADTLTDVFEPGEVKR  102 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSC-----CSSEEEECCCGGGHHHHCCTTSCCE
T ss_pred             CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHh-----ccCchhcccchhhhhcccCchhhhc
Confidence            3557999999999999999998 467899999999999999999998866     479999999986432  45678999


Q ss_pred             EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++..+.++              +++.+.++|||||.|++.+.+.
T Consensus       103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~  147 (204)
T d2fcaa1         103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  147 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             cccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh
Confidence            988877642              5688999999999999976544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=2.2e-15  Score=113.74  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             HHHHHHHhc-ccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          3 QARIIELLE-PKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         3 ~~~~~~~l~-~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      .+.+...+. ..++||.+|||+|||+|..+..++... +++.|+|+|+|+.|++.++++...       .+++..+..|.
T Consensus        60 aA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~d~  131 (230)
T d1g8sa_          60 AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDA  131 (230)
T ss_dssp             HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCT
T ss_pred             HHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEEee
Confidence            334444333 247899999999999999999999874 567999999999999999887655       35778888887


Q ss_pred             CCCC-CCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         82 RTGL-LHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        82 ~~~~-~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      .... .....+|++++...+.+      ++.++.+.|||||++++...
T Consensus       132 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         132 NKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             TCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            6433 23344565554444322      46888999999999988653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-16  Score=122.50  Aligned_cols=117  Identities=16%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCC--------------
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLND--------------   71 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~--------------   71 (216)
                      +.+.+.....+|.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.|++++..........              
T Consensus        41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (257)
T d2a14a1          41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG  118 (257)
T ss_dssp             HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred             HHHHhcccCCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccc
Confidence            344444444578899999999999887766552  2379999999999999999876532100000              


Q ss_pred             ----------CCe-EEEeccCC----CCCCCCCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         72 ----------GRL-HLRCRDGR----TGLLHQAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        72 ----------~~~-~~~~~d~~----~~~~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                                ..+ .....+..    ......++||+|++...+++          +++++.++|||||++++.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence                      000 11112221    12234578999999887754          3478999999999999976543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.59  E-value=1.7e-15  Score=116.37  Aligned_cols=101  Identities=26%  Similarity=0.186  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +....+|||||||+|.++..++++. |+.+++++|+ +++++.+++++...++    .+++.+..+|.....+  ..||+
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~----~~ri~~~~~d~~~~~p--~~~D~  150 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL----ADRVTVAEGDFFKPLP--VTADV  150 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTEEEEECCTTSCCS--CCEEE
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCC----cceeeeeeeecccccc--ccchh
Confidence            4566899999999999999999985 6779999997 8889999999888664    3779999999865432  35999


Q ss_pred             EEecCCCCc--------hHHHHHhcCCCCeEEEEeec
Q psy14962         94 IYLSTYVPE--------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        94 i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |++...+++        +++++++.|||||++++...
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            999988865        46788999999999998653

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.58  E-value=3.1e-14  Score=105.34  Aligned_cols=103  Identities=17%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~   93 (216)
                      ....|||||||+|..+..+|+.. |+..++|+|+++.++..|.++..+.++     .|+.++.+|+....  .+.+++|.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l-----~Ni~~~~~da~~l~~~~~~~~~~~  104 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDYFEDGEIDR  104 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc-----ccceeeecCHHHHhhhccCCceeh
Confidence            34579999999999999999984 678999999999999999999988763     79999999986432  35678999


Q ss_pred             EEecCCCCc--------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE--------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~--------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |++..+.++              ++..+.++|||||.+++.+.+.
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~  149 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR  149 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCc
Confidence            999877643              5688999999999999876544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.8e-15  Score=111.99  Aligned_cols=108  Identities=16%  Similarity=0.061  Sum_probs=83.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC------------CCCCCCeEEEeccC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD------------LLNDGRLHLRCRDG   81 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~~d~   81 (216)
                      +.++.+|||+|||+|..+..+++.   +.+|+|+|+|+.+++.|++.....+..            .....++++.++|.
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            568899999999999999999987   569999999999999988875431100            01124688899987


Q ss_pred             CCCC-CCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         82 RTGL-LHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        82 ~~~~-~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .... ...+.||+|+....+++        +.+.+.++|||||++++.+...
T Consensus       120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence            6443 34578999998887754        3478999999999988876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=112.16  Aligned_cols=98  Identities=21%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D   92 (216)
                      .+|.+|||||||+|..+..+++..  ..+++++|+|+.+++.|+++....+      .++.++..++..  .....++||
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD  123 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTLPDGHFD  123 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGSCTTCEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc------ccccccccccccccccccccccc
Confidence            578899999999999999998863  3589999999999999999876643      456777776542  223467899


Q ss_pred             EEEecCCC-----Cc------hHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTYV-----PE------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~~-----~~------~~~~~~~~L~~gG~lv~~  120 (216)
                      .|+.+...     .+      +++.+.++|||||+|++.
T Consensus       124 ~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         124 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            99865443     22      457789999999999773

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4.5e-14  Score=108.70  Aligned_cols=102  Identities=20%  Similarity=0.241  Sum_probs=84.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ..+.+|||+|||+|.+++.++... |..+|+++|+|+.+++.|++++...+.     .++.++.+|..... .+.+||+|
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~-----~~v~~~~~d~~~~~-~~~~fDlI  179 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHILQSDWFSAL-AGQQFAMI  179 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCSTTGGG-TTCCEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCc-----ccceeeeccccccc-CCCceeEE
Confidence            456789999999999999999885 578999999999999999999998763     68999999986543 35689999


Q ss_pred             EecCCCCc-------------------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         95 YLSTYVPE-------------------------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        95 ~~~~~~~~-------------------------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +++.|.-.                               ++....++|+|||.+++....
T Consensus       180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~  239 (274)
T d2b3ta1         180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  239 (274)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            99988510                               235667899999999996543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.5e-14  Score=113.01  Aligned_cols=105  Identities=20%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC---CCCCCCCc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT---GLLHQAPF   91 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~   91 (216)
                      .++.+|||+|||+|..+..+++.   +.+|+|+|+|++|++.|+++....+.. ....+..+...++..   ..+..++|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f  130 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEANWLTLDKDVPAGDGF  130 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTS-HHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccc-cccceeeeeeccccccccccCCCCCc
Confidence            45789999999999999999987   459999999999999999987664311 000122344444321   12234679


Q ss_pred             cEEEecC-CCCc-------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         92 DAIYLST-YVPE-------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        92 D~i~~~~-~~~~-------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      |.|++.. .+.+             +++++.++|||||+|++...+
T Consensus       131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            9998754 3332             578999999999999997654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=3.4e-14  Score=112.51  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             HHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--
Q psy14962          8 ELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--   85 (216)
Q Consensus         8 ~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--   85 (216)
                      ..+...+++|.+|||+|||+|.+++.+++..  ..+|+++|+++.+++.+++++..+++    ..+++++.+|+....  
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl----~~~~~~~~~d~~~~~~~  210 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGV----EDRMKFIVGSAFEEMEK  210 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC----GGGEEEEESCHHHHHHH
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCC----CccceeeechhhhhhHH
Confidence            3444456789999999999999999988773  24899999999999999999999875    257899999975321  


Q ss_pred             --CCCCCccEEEecCCCC---------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         86 --LHQAPFDAIYLSTYVP---------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                        ....+||+|+++.+..               .++..+.++|+|||+++++.++..
T Consensus       211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence              2346899999998852               145677789999999999876663

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=107.31  Aligned_cols=106  Identities=18%  Similarity=0.080  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-----CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEE--eccCC------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-----GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLR--CRDGR------   82 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~d~~------   82 (216)
                      +..+|||+|||+|..+..+++.+     +....++++|+|+.|++.+++++.....    ..++.+.  ..+..      
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  115 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN----LENVKFAWHKETSSEYQSRM  115 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS----CTTEEEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc----cccccccchhhhhhhhcchh
Confidence            34479999999999988887653     1224789999999999999998765221    2344433  33221      


Q ss_pred             CCCCCCCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ......++||+|++...+++      +++.+.++|+|||.+++.+.++.
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            12234678999999999866      56899999999999999877654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.7e-14  Score=110.04  Aligned_cols=107  Identities=17%  Similarity=0.096  Sum_probs=72.3

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCC----------------------
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLN----------------------   70 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~----------------------   70 (216)
                      ....|.+|||+|||+|..+...+...  ..+|+++|.|+.|++.+++++.+.... ..                      
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~  127 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGA-FNWSMYSQHACLIEGKGECWQDKE  127 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTC-CCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCccc-ccchhhhhhhhhhccccchhhhhH
Confidence            34568899999999998875555442  238999999999999999876432100 00                      


Q ss_pred             ----CCCeEEEeccCCCCC------CCCCCccEEEecCCCCc----------hHHHHHhcCCCCeEEEEeec
Q psy14962         71 ----DGRLHLRCRDGRTGL------LHQAPFDAIYLSTYVPE----------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        71 ----~~~~~~~~~d~~~~~------~~~~~~D~i~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~  122 (216)
                          .....+...|+....      ...++||+|++...+++          +++++.++|||||.+++...
T Consensus       128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence                001134445553211      22357999999887754          34788899999999998643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=2.5e-13  Score=104.02  Aligned_cols=101  Identities=19%  Similarity=0.113  Sum_probs=85.0

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.+|.+|||+|||+|.+++.+++..  .++|+++|+++.+++.+++++..+++    .+++.++++|+.... ..+.||
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v~~~~~D~~~~~-~~~~~D  176 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKV----EDRMSAYNMDNRDFP-GENIAD  176 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTC----TTTEEEECSCTTTCC-CCSCEE
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCC----CceEEEEEcchHHhc-cCCCCC
Confidence            35789999999999999999999873  35999999999999999999998776    367999999987544 357899


Q ss_pred             EEEecCCC--CchHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTYV--PEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~~--~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .|+++.+.  ..++....+.|++||.+.+.
T Consensus       177 ~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         177 RILMGYVVRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             EEEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence            99998664  34678888999999998664

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=4.6e-14  Score=111.37  Aligned_cols=103  Identities=20%  Similarity=0.124  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC----CCCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG----LLHQAP   90 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~   90 (216)
                      .+|.+|||++||+|.+++.+++.   +.+|+++|.|+.+++.|++++..+++     .++.++.+|....    ....++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl-----~~~~~i~~d~~~~~~~~~~~~~~  215 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL-----GNVRVLEANAFDLLRRLEKEGER  215 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC-----TTEEEEESCHHHHHHHHHHTTCC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC-----CCcceeeccHHHHhhhhHhhhcC
Confidence            46899999999999999988864   45999999999999999999998774     6899999997532    123468


Q ss_pred             ccEEEecCCCC---------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVP---------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||+|+++.+..               .++..+.++|+|||.++++++++.
T Consensus       216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~  265 (318)
T d1wxxa2         216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  265 (318)
T ss_dssp             EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            99999998741               244677889999999999877653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=108.13  Aligned_cols=113  Identities=18%  Similarity=0.225  Sum_probs=84.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------hCCCCCCCCCeE
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR-------IRPDLLNDGRLH   75 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~~~~~~~~~~   75 (216)
                      +..+++.+.  +.++++|||+|||+|..+..+++..+ ..+++|+|+++.+++.|++....       .|   ....++.
T Consensus       140 ~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g---~~~~~i~  213 (328)
T d1nw3a_         140 VAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKHAEYT  213 (328)
T ss_dssp             HHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT---CCCCCEE
T ss_pred             HHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc---ccCCceE
Confidence            455666664  78999999999999999999998754 45899999999999998876543       22   1246799


Q ss_pred             EEeccCCCCCCCCC--CccEEEecCCCC-----chHHHHHhcCCCCeEEEEee
Q psy14962         76 LRCRDGRTGLLHQA--PFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        76 ~~~~d~~~~~~~~~--~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++++|+......+.  .+|+|+++....     ..+.++.+.|||||++|+..
T Consensus       214 ~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         214 LERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             EEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             EEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            99999875433222  247788755432     24578889999999998753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2.9e-13  Score=107.33  Aligned_cols=98  Identities=23%  Similarity=0.152  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      ..+|++|||+|||+|.++..+++..  ..+|+++|.++ ++..|++.....+.    ..++.++.+|......+.++||+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~----~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGF----SDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTC----TTTEEEEESCTTTSCCSSSCEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCc----cccceEEEeehhhccCcccceeE
Confidence            3578999999999999999888873  23999999886 66788888877664    47899999998876666788999


Q ss_pred             EEecCCCCc---------hHHHHHhcCCCCeEEE
Q psy14962         94 IYLSTYVPE---------IPYSILLQLKPGGRLV  118 (216)
Q Consensus        94 i~~~~~~~~---------~~~~~~~~L~~gG~lv  118 (216)
                      |++......         ++....++|||||+++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            998655321         3456678999999885

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=2.8e-13  Score=97.53  Aligned_cols=111  Identities=16%  Similarity=0.075  Sum_probs=80.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-   83 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-   83 (216)
                      .+...+...+..|.+|||+|||+|.++++++.+   +++++++|.++.+++.+++++...+.      ..++...+... 
T Consensus        30 ~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~------~~~v~~~~~d~~  100 (171)
T d1ws6a1          30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGL------GARVVALPVEVF  100 (171)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTC------CCEEECSCHHHH
T ss_pred             HHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcc------ccceeeeehhcc
Confidence            444555555678999999999999999988876   45899999999999999999998764      22444444321 


Q ss_pred             ---CCCCCCCccEEEecCCCCc----hHHHH--HhcCCCCeEEEEeecCC
Q psy14962         84 ---GLLHQAPFDAIYLSTYVPE----IPYSI--LLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        84 ---~~~~~~~~D~i~~~~~~~~----~~~~~--~~~L~~gG~lv~~~~~~  124 (216)
                         ......+||+|++++|+..    .+..+  ..+|+|||++++.....
T Consensus       101 ~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~  150 (171)
T d1ws6a1         101 LPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             HHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             cccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence               1123467999999988643    33333  35799999998865443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.43  E-value=4.1e-13  Score=94.84  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC
Q psy14962          5 RIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG   84 (216)
Q Consensus         5 ~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~   84 (216)
                      .+...+... -.|.+|||+|||+|.++++++.+..  .+|+++|.++.+++.+++++...+.    .++++++.+|+...
T Consensus         4 ~~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~----~~~~~ii~~D~~~~   76 (152)
T d2esra1           4 AIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKA----ENRFTLLKMEAERA   76 (152)
T ss_dssp             HHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTC----GGGEEEECSCHHHH
T ss_pred             HHHHHHHhh-CCCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhccc----ccchhhhccccccc
Confidence            345566543 3689999999999999998887732  4999999999999999999988664    36689999997643


Q ss_pred             C-CCCCCccEEEecCCCCc-----hHHHHH--hcCCCCeEEEEeecCC
Q psy14962         85 L-LHQAPFDAIYLSTYVPE-----IPYSIL--LQLKPGGRLVCGVGKS  124 (216)
Q Consensus        85 ~-~~~~~~D~i~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~~~  124 (216)
                      . ...++||+|++++|+..     .+..+.  ++|+|+|.+++.....
T Consensus        77 l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          77 IDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             HHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             ccccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            2 23568999999988643     334333  5799999999876544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6e-13  Score=104.96  Aligned_cols=99  Identities=20%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.+|++|||+|||+|.++..+++..  ..+|+++|.++. ...+++....+++    .+++.++.+|......+.++||+
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~----~~~v~~~~~~~~~~~~~~~~~D~  103 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKL----DHVVTIIKGKVEEVELPVEKVDI  103 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTC----TTTEEEEESCTTTCCCSSSCEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCC----ccccceEeccHHHcccccceeEE
Confidence            4578999999999999999888873  238999999975 4667777766654    47799999998876666678999


Q ss_pred             EEecCCCC---------chHHHHHhcCCCCeEEEE
Q psy14962         94 IYLSTYVP---------EIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        94 i~~~~~~~---------~~~~~~~~~L~~gG~lv~  119 (216)
                      |++.....         .++..+.++|+|||.++-
T Consensus       104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            98864432         244677899999999864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.42  E-value=2.1e-13  Score=107.35  Aligned_cols=108  Identities=14%  Similarity=0.042  Sum_probs=86.7

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCC
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQ   88 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~   88 (216)
                      .+.+|.+|||++||+|.+++.++...  ..+|+++|.++.+++.+++++..+++   ...+++++.+|+....    ...
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~~~i~~d~~~~l~~~~~~~  215 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHL---DMANHQLVVMDVFDYFKYARRHH  215 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTC---CCTTEEEEESCHHHHHHHHHHTT
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcc---cCcceEEEEccHHHHHHHHHhhc
Confidence            45689999999999999999877652  23899999999999999999988774   2467899999985322    234


Q ss_pred             CCccEEEecCCC---------------CchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         89 APFDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        89 ~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .+||+|++++|.               ..++..+.++|+|||.++++++++.
T Consensus       216 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         216 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            689999999883               1245677899999999999887763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=103.19  Aligned_cols=99  Identities=21%  Similarity=0.198  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccE
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~   93 (216)
                      +.++++|||+|||+|.+++.+++..+  .+|+++|.++.+.. +.+.....+.    ..++.++.+|.........+||+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~-a~~~~~~~~~----~~~i~~~~~~~~~l~~~~~~~D~  105 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQ-AMDIIRLNKL----EDTITLIKGKIEEVHLPVEKVDV  105 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHH-HHHHHHHTTC----TTTEEEEESCTTTSCCSCSCEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHH-HHHHHHHhCC----CccceEEEeeHHHhcCccccceE
Confidence            45789999999999999999998732  48999999998764 5555555443    47899999998876666678999


Q ss_pred             EEecCCCCc---------hHHHHHhcCCCCeEEEE
Q psy14962         94 IYLSTYVPE---------IPYSILLQLKPGGRLVC  119 (216)
Q Consensus        94 i~~~~~~~~---------~~~~~~~~L~~gG~lv~  119 (216)
                      |++......         ++....++|+|||+++-
T Consensus       106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            998654322         33455689999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=8.2e-13  Score=96.53  Aligned_cols=114  Identities=25%  Similarity=0.217  Sum_probs=92.7

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |...+++.+.  ..++..++|++||+|..+..+++.. ++++|+|+|.++.+++.|++++...+      .++.++.+++
T Consensus        11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~f   81 (192)
T d1m6ya2          11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSY   81 (192)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCG
T ss_pred             HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc------ccccchhHHH
Confidence            6677888886  5789999999999999999999987 56899999999999999999887643      6899999886


Q ss_pred             CCC-----CCCCCCccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         82 RTG-----LLHQAPFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        82 ~~~-----~~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...     ....++||.|+.+.+...               .+....++|+|||.+++...+.
T Consensus        82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            421     122468999999877622               3467779999999999877665

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=1.6e-12  Score=104.94  Aligned_cols=115  Identities=16%  Similarity=0.188  Sum_probs=79.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCC----CCCCCCeEE-E
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPD----LLNDGRLHL-R   77 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-~   77 (216)
                      +..+++.+.  +.+|++|||+|||+|..+..+|+..+ ..+|+|+|+++.+++.|+++....+..    ........+ .
T Consensus       205 i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         205 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            456666664  79999999999999999999999875 358999999999999999877642100    011122333 2


Q ss_pred             eccCCCCCC---CCCCccEEEecCCC-----CchHHHHHhcCCCCeEEEEe
Q psy14962         78 CRDGRTGLL---HQAPFDAIYLSTYV-----PEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        78 ~~d~~~~~~---~~~~~D~i~~~~~~-----~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .++......   .-..+|+|+++...     ...+.++.+.|||||+++..
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            333322111   11357888876543     23567899999999999875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=1.9e-12  Score=100.75  Aligned_cols=104  Identities=16%  Similarity=0.053  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~   89 (216)
                      ...+.+|||++||+|.+++.++..   +++|+++|.|+.+++.|++++..++++   ..+++++++|+....    ....
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~---~~~~~~i~~D~~~~l~~~~~~~~  203 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMKFIQREERRGS  203 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHHHHHHHHHHTC
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhccc---CCcEEEEeCCHHHhHHHHhhcCC
Confidence            456889999999999999998875   459999999999999999999887742   346899999986332    2346


Q ss_pred             CccEEEecCCCC----------------chHHHHHhcCCCCeEEEEeecC
Q psy14962         90 PFDAIYLSTYVP----------------EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        90 ~~D~i~~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +||+|+++.+.-                .+...+.++|+|||.+++.+.+
T Consensus       204 ~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         204 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             CCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            899999998831                1335667899999876555443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=95.75  Aligned_cols=111  Identities=21%  Similarity=0.242  Sum_probs=89.3

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+.. ....++|||+|||+|+.+..+++.+..+++++++|.+++..+.|++++...+.    .++++++.+|+....
T Consensus        50 lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~----~~~i~~~~Gda~e~l  124 (219)
T d2avda1          50 LLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTEEEEESCHHHHH
T ss_pred             HHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc----cceEEEEEeehhhcc
Confidence            3444432 34567999999999999999999887678999999999999999999998776    377999999864321


Q ss_pred             ------CCCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEee
Q psy14962         86 ------LHQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ------~~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~  121 (216)
                            ...++||+|+.+..-..   .++.+.+.|+|||.+++.-
T Consensus       125 ~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence                  12467999999987655   3578889999999999953

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.30  E-value=3e-12  Score=95.86  Aligned_cols=110  Identities=15%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      ++..+.. .....+|||+|+++|+.+..+++.++.+++++.+|.+++..+.|++++.+.|.    .++++++.+++....
T Consensus        50 ~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~----~~~i~~~~g~a~~~L  124 (227)
T d1susa1          50 FLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKIDFREGPALPVL  124 (227)
T ss_dssp             HHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGEEEEESCHHHHH
T ss_pred             HHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc----ccceeeeehHHHHHH
Confidence            4444442 34567999999999999999999987778999999999999999999998775    367999999975322


Q ss_pred             C-------CCCCccEEEecCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         86 L-------HQAPFDAIYLSTYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~-------~~~~~D~i~~~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      .       ..++||+|+.+..-..   .++.+.+.|+|||.+++.
T Consensus       125 ~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         125 DEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            1       2467999999977655   457888999999999995

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=2.9e-12  Score=95.31  Aligned_cols=101  Identities=13%  Similarity=0.175  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC------CCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL------HQA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~   89 (216)
                      ...+|||+|||+|+.++.+++.++++++++++|.++.+.+.|++++...++    .++++++.+|......      ..+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl----~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL----QDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC----Cccceeeeccccccccchhhccccc
Confidence            457999999999999999999877678999999999999999999988775    3679999999753221      236


Q ss_pred             CccEEEecCCCCch-----HHHHHhcCCCCeEEEEe
Q psy14962         90 PFDAIYLSTYVPEI-----PYSILLQLKPGGRLVCG  120 (216)
Q Consensus        90 ~~D~i~~~~~~~~~-----~~~~~~~L~~gG~lv~~  120 (216)
                      +||+|+++..-...     +....++|+|||.+++.
T Consensus       132 ~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         132 TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             CEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred             ccceeeecccccccccHHHHHHHhCccCCCcEEEEe
Confidence            79999998665432     34556789999988773

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=3.6e-11  Score=92.09  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=84.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+..  .+..+|+|+|||+|..+..+++.  +..+|+++|+|+.+++.|++++..++.    ..++.+...|..
T Consensus        99 v~~~~~~~~~--~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~----~~~~~i~~~~~~  170 (271)
T d1nv8a_          99 VELALELIRK--YGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGV----SDRFFVRKGEFL  170 (271)
T ss_dssp             HHHHHHHHHH--HTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTC----TTSEEEEESSTT
T ss_pred             hhhhhhhhcc--ccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCC----CceeEEeecccc
Confidence            3444444431  23468999999999999998865  567999999999999999999998764    356778888876


Q ss_pred             CCCC-CCCCccEEEecCCCCc--------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLL-HQAPFDAIYLSTYVPE--------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~-~~~~~D~i~~~~~~~~--------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .... ..++||+|+++.|.-.                          +-+-+.++|+|||.+++.+...
T Consensus       171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~  239 (271)
T d1nv8a_         171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  239 (271)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH
Confidence            5433 2368999999988410                          1133567899999999876544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=1.3e-11  Score=89.55  Aligned_cols=112  Identities=19%  Similarity=0.221  Sum_probs=85.4

Q ss_pred             HHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC
Q psy14962          6 IIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL   85 (216)
Q Consensus         6 ~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (216)
                      +...|. +..+|.+|||++||+|.++.+++.+..  .+|+++|.++.+++.+++++...+.    ..++.+++.|+....
T Consensus        32 lFn~l~-~~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~----~~~~~i~~~D~~~~l  104 (182)
T d2fhpa1          32 IFNMIG-PYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKE----PEKFEVRKMDANRAL  104 (182)
T ss_dssp             HHHHHC-SCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEESCHHHHH
T ss_pred             HHHHHH-HhcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhc----ccccccccccchhhh
Confidence            344454 345789999999999999999998842  3899999999999999999987653    357899999975322


Q ss_pred             ----CCCCCccEEEecCCCCc-----hHHHHH--hcCCCCeEEEEeecCC
Q psy14962         86 ----LHQAPFDAIYLSTYVPE-----IPYSIL--LQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ----~~~~~~D~i~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~~~  124 (216)
                          ....+||+|++++|+..     .+..+.  .+|+++|.+++.....
T Consensus       105 ~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~  154 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT  154 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence                23457999999999743     345554  4699999998865443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.6e-11  Score=89.10  Aligned_cols=100  Identities=12%  Similarity=0.083  Sum_probs=79.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i   94 (216)
                      .+.+|||++||+|.++.+++.+..  .+|+.+|.++.+++.+++++...+     ..+..++..|+.... ....+||+|
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~-----~~~~~ii~~d~~~~l~~~~~~fDlI  115 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLK-----AGNARVVNSNAMSFLAQKGTPHNIV  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTT-----CCSEEEECSCHHHHHSSCCCCEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhcc-----ccceeeeeecccccccccccccCEE
Confidence            678999999999999999888732  389999999999999999998754     468899999876332 235689999


Q ss_pred             EecCCCCc-----hHHHHH--hcCCCCeEEEEeec
Q psy14962         95 YLSTYVPE-----IPYSIL--LQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~  122 (216)
                      ++++|+..     .+..+.  .+|+++|.+++...
T Consensus       116 f~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         116 FVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             EECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            99999754     234443  46999999998643

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=2.1e-11  Score=89.08  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .|.+|||+|||+|.++..++...  ..+|+++|+++.+++.|+++.          .++.++++|+...   .++||+|+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~----------~~~~~~~~D~~~l---~~~fD~Vi  112 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC----------GGVNFMVADVSEI---SGKYDTWI  112 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC----------TTSEEEECCGGGC---CCCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcc----------ccccEEEEehhhc---CCcceEEE
Confidence            58999999999999998877762  248999999999999998874          4688999997643   46799999


Q ss_pred             ecCCCC
Q psy14962         96 LSTYVP  101 (216)
Q Consensus        96 ~~~~~~  101 (216)
                      ++.|+.
T Consensus       113 ~NPPfg  118 (197)
T d1ne2a_         113 MNPPFG  118 (197)
T ss_dssp             ECCCC-
T ss_pred             eCcccc
Confidence            999973

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=2.6e-11  Score=89.20  Aligned_cols=75  Identities=24%  Similarity=0.314  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      .|.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++...+      .+..++..|....   ..+||+|+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~------~~~~~~~~d~~~~---~~~fD~Vi  114 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFK------GKFKVFIGDVSEF---NSRVDIVI  114 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGT------TSEEEEESCGGGC---CCCCSEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcC------CCceEEECchhhh---CCcCcEEE
Confidence            6889999999999999988766 2 2499999999999999999987754      5678888887543   45799999


Q ss_pred             ecCCCC
Q psy14962         96 LSTYVP  101 (216)
Q Consensus        96 ~~~~~~  101 (216)
                      ++.++.
T Consensus       115 ~nPP~~  120 (201)
T d1wy7a1         115 MNPPFG  120 (201)
T ss_dssp             ECCCCS
T ss_pred             EcCccc
Confidence            999974

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-10  Score=87.50  Aligned_cols=82  Identities=12%  Similarity=0.019  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~   89 (216)
                      +..++||+|||+|.++..+++.. ++.+++|+|+++++++.|++++..+++    ..++.+...+.....      ...+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l----~~~~~~~~~~~~~~~~~~~~~~~~~  135 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNL----SDLIKVVKVPQKTLLMDALKEESEI  135 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTC----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCC----CcceeeeeeccHHhhhhhhhhcccC
Confidence            34589999999999999999886 468999999999999999999999775    367888776543222      1246


Q ss_pred             CccEEEecCCCCc
Q psy14962         90 PFDAIYLSTYVPE  102 (216)
Q Consensus        90 ~~D~i~~~~~~~~  102 (216)
                      +||+|+|++|+..
T Consensus       136 ~fD~ivsNPPY~~  148 (250)
T d2h00a1         136 IYDFCMCNPPFFA  148 (250)
T ss_dssp             CBSEEEECCCCC-
T ss_pred             ceeEEEecCcccc
Confidence            7999999999864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=3.1e-10  Score=88.85  Aligned_cols=108  Identities=19%  Similarity=0.201  Sum_probs=88.5

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      ..++|.+|||++||+|.-+..++...+..+.+++.|.++..++..++++.+.+     ..++.+...|..........||
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-----~~~i~~~~~d~~~~~~~~~~fD  187 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-----VLNVILFHSSSLHIGELNVEFD  187 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-----CCSEEEESSCGGGGGGGCCCEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-----hhcccccccccccccccccccc
Confidence            35799999999999999999999887767799999999999999999998876     4778777777654444457899


Q ss_pred             EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .|+++.+-.                            .++.+..+.|||||++|.++.+..
T Consensus       188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence            999987731                            134677789999999999988764

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.3e-09  Score=86.79  Aligned_cols=112  Identities=20%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+.+.+.  ..++.+|+|+.||+|.++..+++.   ..+|+|+|.++.+++.|++++..++     ..|+.++.++.
T Consensus       200 l~~~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~-----i~n~~~~~~~~  269 (358)
T d1uwva2         200 MVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNG-----LQNVTFYHENL  269 (358)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCT
T ss_pred             HHHHHHHhhc--cCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcc-----cccceeeecch
Confidence            3445555554  467889999999999999999987   3499999999999999999999877     48999999998


Q ss_pred             CCCCC----CCCCccEEEecCCCCch---HHHHHhcCCCCeEEEEeecCC
Q psy14962         82 RTGLL----HQAPFDAIYLSTYVPEI---PYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        82 ~~~~~----~~~~~D~i~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .....    ....+|+|+.+.+-..+   ...+.+ ++|.-+++++|.+.
T Consensus       270 ~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYVSCnp~  318 (358)
T d1uwva2         270 EEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVSCNPA  318 (358)
T ss_dssp             TSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEESCHH
T ss_pred             hhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEEeCCHH
Confidence            75432    23679999999886553   333333 36777777877544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.07  E-value=4.2e-10  Score=84.45  Aligned_cols=87  Identities=14%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             HHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962          4 ARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus         4 ~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      ..+++.+.  +.++++|||||||+|.+|..+++.   +.+|+++|+++.+++..+++...       .+++.++.+|+..
T Consensus        11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~-------~~n~~i~~~D~l~   78 (235)
T d1qama_          11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD-------HDNFQVLNKDILQ   78 (235)
T ss_dssp             HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT-------CCSEEEECCCGGG
T ss_pred             HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc-------ccchhhhhhhhhh
Confidence            44455443  578999999999999999999987   34999999999999999887644       3689999999986


Q ss_pred             CCCCCCCccEEEecCCCCc
Q psy14962         84 GLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        84 ~~~~~~~~D~i~~~~~~~~  102 (216)
                      ..........|+.+.|..-
T Consensus        79 ~~~~~~~~~~vv~NLPYnI   97 (235)
T d1qama_          79 FKFPKNQSYKIFGNIPYNI   97 (235)
T ss_dssp             CCCCSSCCCEEEEECCGGG
T ss_pred             ccccccccceeeeeehhhh
Confidence            5443333456778777654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.04  E-value=9.3e-10  Score=79.56  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=77.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCCCCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGLLHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~D   92 (216)
                      .+.+|||+.||||.++.+++.+..  .+|+.+|.+...+...++++...+.+   .....+...|..   .......+||
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~---~~~~~~~~~d~~~~l~~~~~~~~fD  117 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQSSLDFLKQPQNQPHFD  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSCHHHHTTSCCSSCCEE
T ss_pred             ccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhccc---ccccccccccccccccccccCCccc
Confidence            678999999999999999998842  39999999999999999999875531   234566666643   2222345799


Q ss_pred             EEEecCCCCc-----hHHHHH--hcCCCCeEEEEeecC
Q psy14962         93 AIYLSTYVPE-----IPYSIL--LQLKPGGRLVCGVGK  123 (216)
Q Consensus        93 ~i~~~~~~~~-----~~~~~~--~~L~~gG~lv~~~~~  123 (216)
                      +|++++|...     .+..+.  .+|+++|.+++....
T Consensus       118 lIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         118 VVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            9999999855     334443  479999999986543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=2.8e-10  Score=88.95  Aligned_cols=109  Identities=21%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      ....+||.+|.|.|..+..+++.. +..+|+++|++++.++.|++.+...........+++++.+|+..... .+.+||+
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            456799999999999999988773 35699999999999999999875422111234689999999864332 3467999


Q ss_pred             EEecCCC-------------CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYV-------------PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~-------------~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      |+++..-             ..+.+.+++.|+|||.+++...++
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~  198 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI  198 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCc
Confidence            9986532             124588999999999999876544

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=1.7e-09  Score=85.20  Aligned_cols=104  Identities=19%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVG----KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~----~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      .+++.+|+|.|||+|.+...+...+.    ...+++|+|+++.++..|+.+....+      .+..+...|..... ...
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~-~~~  187 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR------QKMTLLHQDGLANL-LVD  187 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT------CCCEEEESCTTSCC-CCC
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh------hhhhhhcccccccc-ccc
Confidence            35677899999999999988876542    23479999999999999988877654      45677777765333 346


Q ss_pred             CccEEEecCCCCc------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         90 PFDAIYLSTYVPE------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        90 ~~D~i~~~~~~~~------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +||+|++++|+..                        ++..+.+.|+|||++++.++..
T Consensus       188 ~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         188 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            8999999999721                        3577889999999998877654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.99  E-value=2.7e-10  Score=87.62  Aligned_cols=109  Identities=19%  Similarity=0.108  Sum_probs=82.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCC-----CCCCCCCeEEEeccCCCCCCCCC
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRP-----DLLNDGRLHLRCRDGRTGLLHQA   89 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~   89 (216)
                      .+..+||.+|+|.|..+..+++.  +..+|+++|+++.+++.|++.+.....     .....++++++.+|+.......+
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            45689999999999999888875  235899999999999999876532100     00123689999999864433456


Q ss_pred             CccEEEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         90 PFDAIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        90 ~~D~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +||+|+++...+          .+.+.+++.|+|||.+++...++.
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~  194 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY  194 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence            899999876542          246889999999999999876654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.4e-09  Score=81.43  Aligned_cols=106  Identities=16%  Similarity=0.101  Sum_probs=83.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAP   90 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~   90 (216)
                      ..+|.+|||++||+|.-+..++...+..+.++++|+++..++..++++.+.|     ..++.+...|.......   .+.
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-----~~~~~~~~~d~~~~~~~~~~~~~  166 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-----VSCCELAEEDFLAVSPSDPRYHE  166 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCGGGSCTTCGGGTT
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-----ccceeeeehhhhhhcccccccce
Confidence            5789999999999999999999888777799999999999999999999966     47888988887643322   267


Q ss_pred             ccEEEecCCCCc------------------------------hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         91 FDAIYLSTYVPE------------------------------IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        91 ~D~i~~~~~~~~------------------------------~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      ||.|+++.+-..                              ++.... .++|||++|.++.+..
T Consensus       167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~  230 (293)
T d2b9ea1         167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC  230 (293)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred             eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence            999999877310                              112222 4799999999887764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=2.5e-09  Score=81.95  Aligned_cols=109  Identities=19%  Similarity=0.200  Sum_probs=85.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      .+..+||.+|.|.|..+.++++..+ ..+|+.+|++++.++.|++.+..... .+..++++++.+|+..... .+++||+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~-~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAG-KLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHT-TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcc-cccCCCeEEEechHHHHHhhcCCCCCE
Confidence            4567999999999999999998742 45999999999999999997654221 1335789999999864322 3468999


Q ss_pred             EEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++..-+          .+.+.+++.|+|||.++....++.
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~  193 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW  193 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcc
Confidence            99886542          256899999999999999877664

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.95  E-value=2.9e-10  Score=85.92  Aligned_cols=89  Identities=16%  Similarity=0.175  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ...+|+|||||+|.++..++++. |+.+++..|. |+.++.+       +    ...+++++.+|+....+   .+|+++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~-------~----~~~rv~~~~gD~f~~~p---~aD~~~  143 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENL-------S----GSNNLTYVGGDMFTSIP---NADAVL  143 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTC-------C----CBTTEEEEECCTTTCCC---CCSEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhC-------c----ccCceEEEecCcccCCC---CCcEEE
Confidence            34689999999999999999985 6789999997 4433322       1    14789999999875432   479999


Q ss_pred             ecCCCCc--------hHHHHHhcCCCC---eEEEEe
Q psy14962         96 LSTYVPE--------IPYSILLQLKPG---GRLVCG  120 (216)
Q Consensus        96 ~~~~~~~--------~~~~~~~~L~~g---G~lv~~  120 (216)
                      +...++.        +++++++.|+||   |++++.
T Consensus       144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            9988875        568889999998   667664

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=1.1e-09  Score=84.56  Aligned_cols=109  Identities=19%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      +...+||-+|.|.|..+.+++++. +..+|+++|+++.+++.+++.+..... .+..++++++.+|+..... .+++||+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcc-cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            345799999999999999998874 345899999999999999987654210 1224789999999864332 3467999


Q ss_pred             EEecCCCC-----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVP-----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++..-+           .+.+.+++.|+|||.+++...++.
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~  208 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF  208 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence            99875432           245899999999999999887763

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.94  E-value=6.4e-11  Score=89.48  Aligned_cols=89  Identities=19%  Similarity=0.168  Sum_probs=71.6

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      ++..+++.+.  +.++++|||||||+|.+|..+++.   +.+|+++|+++.+++.+++++..       ..++.++++|+
T Consensus        17 ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~-------~~n~~ii~~D~   84 (245)
T d1yuba_          17 VLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL-------NTRVTLIHQDI   84 (245)
T ss_dssp             THHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT-------CSEEEECCSCC
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhh-------ccchhhhhhhh
Confidence            3566777764  678899999999999999999988   34999999999998887766543       36899999999


Q ss_pred             CCCCCCCCCccEEEecCCCCc
Q psy14962         82 RTGLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        82 ~~~~~~~~~~D~i~~~~~~~~  102 (216)
                      .........++.|+++.+..-
T Consensus        85 l~~~~~~~~~~~vv~NLPY~I  105 (245)
T d1yuba_          85 LQFQFPNKQRYKIVGNIPYHL  105 (245)
T ss_dssp             TTTTCCCSSEEEEEEECCSSS
T ss_pred             hccccccceeeeEeeeeehhh
Confidence            866555566778888888754

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.7e-09  Score=82.34  Aligned_cols=106  Identities=21%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC-CCCCCCcc
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG-LLHQAPFD   92 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D   92 (216)
                      ..+|.+|||+|+|+|.-+..++... ..+.++++|.++..+...++++.+.+.     .++.+...|.... ....+.||
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~-----~~~~~~~~~~~~~~~~~~~~fd  173 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM-----KATVKQGDGRYPSQWCGEQQFD  173 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC-----CCEEEECCTTCTHHHHTTCCEE
T ss_pred             ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccc-----cceeeeccccccchhccccccc
Confidence            5789999999999999999998864 357999999999999999999998663     5555555443321 12346799


Q ss_pred             EEEecCCCC----------------------------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP----------------------------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .|+++.+-.                            .++.++.+.|||||++|.++.+..
T Consensus       174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence            999988831                            134667789999999999988764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.88  E-value=3.1e-09  Score=80.12  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      ....+|||||||+|.++..++++. |+.+++..|. |+.++       ...    ...++.++.+|+....+   ..|++
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~----~~~ri~~~~gd~~~~~p---~~D~~  143 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIE-------NAP----PLSGIEHVGGDMFASVP---QGDAM  143 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCC----CCTTEEEEECCTTTCCC---CEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhh-------ccC----CCCCeEEecCCcccccc---cceEE
Confidence            455789999999999999999985 6789999997 43332       111    14789999999875432   35999


Q ss_pred             EecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         95 YLSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        95 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ++...++.        +++++++.|+|||++++..
T Consensus       144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            99888865        5688899999999999864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=3.9e-09  Score=75.94  Aligned_cols=109  Identities=24%  Similarity=0.169  Sum_probs=85.5

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG   81 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~   81 (216)
                      |+..+++.+.  ..+|..++|..+|.|..+..+++.   +++|+|+|.++.++..+++..         ..++.+++.+.
T Consensus         6 ll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~f   71 (182)
T d1wg8a2           6 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLH---------LPGLTVVQGNF   71 (182)
T ss_dssp             THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTC---------CTTEEEEESCG
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhcc---------ccceeEeehHH
Confidence            6777888886  578999999999999999998886   459999999999998887641         25788888876


Q ss_pred             CCCC-----CCCCCccEEEecCCCCc---------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         82 RTGL-----LHQAPFDAIYLSTYVPE---------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        82 ~~~~-----~~~~~~D~i~~~~~~~~---------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ....     ...+.+|.|+.+.+...               .+....+.|++||.+++...+.
T Consensus        72 ~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          72 RHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            4211     12357999999887632               3466778999999999987765

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.5e-08  Score=72.98  Aligned_cols=102  Identities=11%  Similarity=0.165  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ++.+|+|+|+|.|.-++.+|-. .|+.+++.+|.+..-+.+.++.....+     ..|+.+++..++... ...+||+|+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~-----L~nv~v~~~R~E~~~-~~~~fD~V~  137 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELK-----LENIEPVQSRVEEFP-SEPPFDGVI  137 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTT-----CSSEEEEECCTTTSC-CCSCEEEEE
T ss_pred             cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcC-----Ccceeeeccchhhhc-cccccceeh
Confidence            4679999999999999998875 467899999999999999998888855     478999999987543 345799999


Q ss_pred             ecCCC--CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         96 LSTYV--PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        96 ~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +.+..  ..++.-+...++++|.+++.-...
T Consensus       138 sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~~  168 (207)
T d1jsxa_         138 SRAFASLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             CSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             hhhhcCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            87664  346677888999999999976543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=3.6e-09  Score=81.68  Aligned_cols=109  Identities=21%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--CCCCCcc
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--LHQAPFD   92 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D   92 (216)
                      ....+||-+|.|.|..+.++++.. +..+++++|++++.++.+++.+..... ....++++++.+|+....  ..+++||
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~-~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhc-cccCCCcEEEEccHHHHHhhccccCcc
Confidence            345799999999999999998874 235899999999999999987643210 123578999999976433  2245899


Q ss_pred             EEEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+++..-+          .+.+.+++.|+|||.+++...++.
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  199 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW  199 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence            999876642          245899999999999999887764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.2e-09  Score=81.05  Aligned_cols=109  Identities=21%  Similarity=0.164  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-CCCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-LHQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~   93 (216)
                      ...++||-+|.|.|..+..+.+..+ ..+++.+|++++.++.|++.+..... ....++++++.+|+.... ...++||+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~-~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAI-GYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhcc-ccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            4557999999999999999988742 45999999999999999987653210 122478999999976333 23468999


Q ss_pred             EEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++..-+          .+.+.+++.|+|||.+++...++.
T Consensus       155 Ii~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~  196 (285)
T d2o07a1         155 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW  196 (285)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchh
Confidence            99876532          246899999999999999887664

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.84  E-value=3.8e-09  Score=78.27  Aligned_cols=105  Identities=24%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..|++++.  ..++.+|||.|||+|.+...+.+.......++|+|+++..+..+              .+..++++|..
T Consensus         8 ~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------~~~~~~~~~~~   71 (223)
T d2ih2a1           8 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGILADFL   71 (223)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEESCGG
T ss_pred             HHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------------ccceeeeeehh
Confidence            445666654  56789999999999999988887766566899999998754321              34567788765


Q ss_pred             CCCCCCCCccEEEecCCCCc-----------------------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE-----------------------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~-----------------------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ... ....||+|+++.++..                                   ++....+.|++||++.+.++..
T Consensus        72 ~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          72 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            433 3467999999988521                                   2256678999999998877654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.82  E-value=3.5e-09  Score=82.14  Aligned_cols=109  Identities=22%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      ....+||.+|.|.|..+.++++.. +..+|+.+|+++.+++.+++.+..... .+..++++++.+|+..... ..++||+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~-~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC-GFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG-GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhcc-ccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            456799999999999999999873 235999999999999999987643210 1234789999999864332 3467999


Q ss_pred             EEecCCCC----------chHHHHHhcCCCCeEEEEeecCCC
Q psy14962         94 IYLSTYVP----------EIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        94 i~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      |+++...+          .+.+.+++.|+|||.++....++.
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~  224 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW  224 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence            99876542          245889999999999999876664

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.81  E-value=2.2e-08  Score=72.72  Aligned_cols=106  Identities=20%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             CCCCeEEEEcCCCchHH----HHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH-------------HhCCCC-CCC--
Q psy14962         15 QEGAKVLDIGSGSGFMS----CVFAELVG---KTGRVFGVEHMREQCEDAWETVM-------------RIRPDL-LND--   71 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~----~~l~~~~~---~~~~v~~~D~~~~~~~~a~~~~~-------------~~~~~~-~~~--   71 (216)
                      .+..+|+++|||+|.-.    +.+.....   ...+++|+|+++..++.|++..-             ...... ...  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34458999999999743    33333322   12479999999999999974210             000000 000  


Q ss_pred             ----------CCeEEEeccCCCC-CCCCCCccEEEecCCCCc--------hHHHHHhcCCCCeEEEEe
Q psy14962         72 ----------GRLHLRCRDGRTG-LLHQAPFDAIYLSTYVPE--------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        72 ----------~~~~~~~~d~~~~-~~~~~~~D~i~~~~~~~~--------~~~~~~~~L~~gG~lv~~  120 (216)
                                ..+.+...+.... ....+.||+|+|.+.+..        +++.+.+.|+|||+|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      1133343443322 223478999999999854        568889999999998874

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=9.7e-08  Score=72.88  Aligned_cols=89  Identities=19%  Similarity=0.181  Sum_probs=69.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.+++.|||||+|+|.+|..+++.   +.+++++|+++.+++..++.+.....    ..++.++.+|+.
T Consensus        10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~----~~~~~~i~~D~l   80 (278)
T d1zq9a1          10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPV----ASKLQVLVGDVL   80 (278)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTT----GGGEEEEESCTT
T ss_pred             HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhcc----ccchhhhHHHHh
Confidence            455666664  568899999999999999999988   34999999999999999888765321    367999999987


Q ss_pred             CCCCCCCCccEEEecCCCCc
Q psy14962         83 TGLLHQAPFDAIYLSTYVPE  102 (216)
Q Consensus        83 ~~~~~~~~~D~i~~~~~~~~  102 (216)
                      ....+  .++.|+.+.++.-
T Consensus        81 ~~~~~--~~~~vV~NLPY~I   98 (278)
T d1zq9a1          81 KTDLP--FFDTCVANLPYQI   98 (278)
T ss_dssp             TSCCC--CCSEEEEECCGGG
T ss_pred             hhhhh--hhhhhhcchHHHH
Confidence            54432  3577888888754

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.66  E-value=1.2e-07  Score=77.06  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=86.5

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCC------------cEEEEEeCCHHHHHHHHHHHHHhCCCCC
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKT------------GRVFGVEHMREQCEDAWETVMRIRPDLL   69 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~------------~~v~~~D~~~~~~~~a~~~~~~~~~~~~   69 (216)
                      ++..|++.+.  ..++.+|+|.+||+|.+...+.+++...            ..++|+|+++.+...|+-++.-++.   
T Consensus       150 Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~---  224 (425)
T d2okca1         150 LIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI---  224 (425)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC---
T ss_pred             hhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC---
Confidence            3456666665  3568899999999999998887765211            2589999999999999888766553   


Q ss_pred             CCCCeEEEeccCCCCCCCCCCccEEEecCCCCc-----------------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         70 NDGRLHLRCRDGRTGLLHQAPFDAIYLSTYVPE-----------------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        70 ~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~-----------------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      ...+..+...|..... ....||+|++++|+..                       ++..+.+.|++||++.+.+++.
T Consensus       225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence            1234567777765433 3467999999999721                       4578889999999998887653

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.63  E-value=4.8e-08  Score=73.46  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIY   95 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~   95 (216)
                      ...+|+|||||+|.++..++++. |+.++++.|..+. ++.+           ....++.+...|+....+ .  .|.++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~-----------~~~~r~~~~~~d~~~~~P-~--ad~~~  144 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA-----------PSYPGVEHVGGDMFVSIP-K--ADAVF  144 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC-----------CCCTTEEEEECCTTTCCC-C--CSCEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc-----------ccCCceEEecccccccCC-C--cceEE
Confidence            35689999999999999999986 6789999998553 2211           114789999999875433 2  46677


Q ss_pred             ecCCCCc--------hHHHHHhcCCCCeEEEEee
Q psy14962         96 LSTYVPE--------IPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        96 ~~~~~~~--------~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....++.        +++++++.|+|||++++..
T Consensus       145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            7666654        5789999999999998853

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=6.5e-08  Score=69.31  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=73.4

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      .++++.+|||+||++|.++..+.+..+....++++|..+-                ....++.++.+|.....       
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------------~~i~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------------DPIVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------------CCCTTEEEEESCTTSHHHHHHHHH
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------------cccCCceEeecccccchhhhhhhh
Confidence            3578999999999999999999988877789999997652                11367889999875322       


Q ss_pred             -CCCCCccEEEecCCCCc-----------------hHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 -LHQAPFDAIYLSTYVPE-----------------IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~-----------------~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                       ....++|+|+++.+..-                 .+.-+.++|++||.+|+-....
T Consensus        83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence             12367999999987521                 2245568999999999977654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=5e-08  Score=73.57  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=65.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC
Q psy14962          3 QARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR   82 (216)
Q Consensus         3 ~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   82 (216)
                      +..+++.+.  +.+++.|||||||+|.+|..+++.   +.+|+++|+|+.+++..++....       .+++.++.+|+.
T Consensus        10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~-------~~~~~ii~~D~l   77 (252)
T d1qyra_          10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL-------GPKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT-------GGGEEEECSCGG
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh-------ccchhHHhhhhh
Confidence            556777775  578999999999999999999987   34899999999999888765432       368999999987


Q ss_pred             CCCCCC-----CCccEEEecCCCCc
Q psy14962         83 TGLLHQ-----APFDAIYLSTYVPE  102 (216)
Q Consensus        83 ~~~~~~-----~~~D~i~~~~~~~~  102 (216)
                      ......     +.--.|+.+.++.-
T Consensus        78 ~~~~~~~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          78 TFNFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECCTTT
T ss_pred             hhcccccccccCCCeEEEecchHHH
Confidence            533211     12235677777654

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=4.4e-07  Score=67.56  Aligned_cols=103  Identities=15%  Similarity=0.072  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCCCcc
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D   92 (216)
                      .+.+++|+|+|.|.-++.++-.. |+.+++.+|.+..-..+.+......++     .++.+++..++...   ...+.||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L-----~n~~i~~~R~E~~~~~~~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL-----ENTTFCHDRAETFGQRKDVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC-----SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC-----CCcEEEeehhhhccccccccccce
Confidence            56799999999999999888654 577999999999999998888888664     78888887765322   1236799


Q ss_pred             EEEecCCC--CchHHHHHhcCCCCeEEEEeecCC
Q psy14962         93 AIYLSTYV--PEIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        93 ~i~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +|++.+..  ..++.-+...+++||.+++.-...
T Consensus       144 ~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~  177 (239)
T d1xdza_         144 IVTARAVARLSVLSELCLPLVKKNGLFVALKAAS  177 (239)
T ss_dssp             EEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred             EEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence            99987665  457788889999999999976543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.43  E-value=1.7e-06  Score=61.04  Aligned_cols=97  Identities=19%  Similarity=0.097  Sum_probs=72.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++|+-+|||+ |..+..+++..+  ++|+++|.+++.++.|++...          ...+...+.....      
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga----------~~~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGA----------DVTLVVDPAKEEESSIIER   90 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTC----------SEEEECCTTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCC----------cEEEeccccccccchhhhh
Confidence            478999999999997 888888998864  599999999999988876421          1222221111110      


Q ss_pred             ---CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 ---LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                         .....+|+|+...+.+..+....++++++|++++.-
T Consensus        91 ~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             HHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             hhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEe
Confidence               013468999998888888899999999999998853

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=3e-07  Score=76.53  Aligned_cols=121  Identities=17%  Similarity=0.067  Sum_probs=80.9

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCC-----------------cEEEEEeCCHHHHHHHHHHHHHh
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKT-----------------GRVFGVEHMREQCEDAWETVMRI   64 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~-----------------~~v~~~D~~~~~~~~a~~~~~~~   64 (216)
                      ++..|++++.  ..++.+|+|-+||+|.+...+.+++...                 ..++|+|+++.+...|+-++.-+
T Consensus       152 Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         152 LIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             hhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            3456666665  3578899999999999998877654211                 15899999999999988777654


Q ss_pred             CCCCCCCCCeEEEeccCCCCC-CCCCCccEEEecCCCCc--------------------hHHHHHhcCCCCeEEEEeecC
Q psy14962         65 RPDLLNDGRLHLRCRDGRTGL-LHQAPFDAIYLSTYVPE--------------------IPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        65 ~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~~--------------------~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      +....-.....+...+..... ....+||+|++++|+..                    ++..+.+.|++||++.+.+++
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~  309 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  309 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEeh
Confidence            421000011123333322111 12357999999999721                    567888999999999888765


Q ss_pred             C
Q psy14962        124 S  124 (216)
Q Consensus       124 ~  124 (216)
                      .
T Consensus       310 ~  310 (524)
T d2ar0a1         310 N  310 (524)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.30  E-value=1.1e-06  Score=62.39  Aligned_cols=97  Identities=25%  Similarity=0.244  Sum_probs=72.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC------CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT------GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~------~~   85 (216)
                      .+++|++|+-+|||. |..+..+++..+. .+|+++|.+++.++.+++.-.           ..++.-.-..      ..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa-----------~~~i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA-----------TDILNYKNGHIEDQVMKL   91 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC-----------SEEECGGGSCHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc-----------cccccccchhHHHHHHHH
Confidence            578999999999998 8999999998653 379999999999888876421           1222211110      11


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      .....+|+|+...+....+++..++++|+|++++.-
T Consensus        92 t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          92 TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             hhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEe
Confidence            123459999999988888899999999999998853

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.26  E-value=1.7e-06  Score=64.22  Aligned_cols=95  Identities=15%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCC
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELV---GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQA   89 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~   89 (216)
                      ..+|||+|++.|..+..++..+   ++.++++++|+++........          ..++++++.+|.....    ....
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~----------~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----------DMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----------GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc----------cccceeeeecccccHHHHHHHHhc
Confidence            5699999999998887766443   456799999998754332211          1378999999865322    1234


Q ss_pred             CccEEEecCCCCc--hH--HHHHhcCCCCeEEEEee
Q psy14962         90 PFDAIYLSTYVPE--IP--YSILLQLKPGGRLVCGV  121 (216)
Q Consensus        90 ~~D~i~~~~~~~~--~~--~~~~~~L~~gG~lv~~~  121 (216)
                      .+|.|+.+.....  ..  -.....|++||++++..
T Consensus       151 ~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         151 AHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIED  186 (232)
T ss_dssp             CSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEc
Confidence            6899998876433  11  13457999999999954

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.5e-06  Score=59.41  Aligned_cols=98  Identities=17%  Similarity=0.104  Sum_probs=72.3

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++|+-+|||+ |..+..+++..+. .+|+++|.++..++.|++.-.         +.  ++..+-....      
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~Ga---------~~--~~~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIGA---------DL--VLQISKESPQEIARKV   90 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTC---------SE--EEECSSCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhCC---------cc--cccccccccccccccc
Confidence            468999999999999 8888888888642 389999999999998876421         11  2221111100      


Q ss_pred             --CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         86 --LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                        .....+|+|+...+.+..++...+++++||++++.-.
T Consensus        91 ~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          91 EGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             cccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEec
Confidence              0124689999999988889999999999999988543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.21  E-value=3.6e-06  Score=59.99  Aligned_cols=96  Identities=20%  Similarity=0.136  Sum_probs=70.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--------   83 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--------   83 (216)
                      .+++|++||-+|||+ |..+..+++..+. .+|+++|.+++.++.+++...         +  .++...-..        
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lGa---------~--~vi~~~~~~~~~~~~~i   92 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIGA---------D--LTLNRRETSVEERRKAI   92 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTTC---------S--EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccccc---------e--EEEeccccchHHHHHHH
Confidence            467899999999998 8899999998753 389999999999988875311         1  122111110        


Q ss_pred             -CCCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         84 -GLLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 -~~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                       .......+|+|+...+.+..++...+.+++||++++.
T Consensus        93 ~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          93 MDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             HHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred             HHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEE
Confidence             0012345999999888888889999999999999775

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.21  E-value=3.8e-06  Score=59.45  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-----C
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-----L   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~   86 (216)
                      .+++|++|+-+|||. |..+..+++..+. ..++++|.++..++.+++.-.           ..++..+-....     .
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga-----------~~~i~~~~~~~~~~i~~~   92 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA-----------THVINSKTQDPVAAIKEI   92 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC-----------SEEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC-----------eEEEeCCCcCHHHHHHHH
Confidence            478999999999988 7788888888763 478889999999888876421           223322211100     1


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .++.+|+|+........++...++++|+|++++.
T Consensus        93 t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          93 TDGGVNFALESTGSPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEE
Confidence            2357999999988888889999999999999875

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.20  E-value=2.6e-06  Score=67.59  Aligned_cols=107  Identities=20%  Similarity=0.107  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC----------CCCCeEEEeccCCCCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL----------NDGRLHLRCRDGRTGL   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~d~~~~~   85 (216)
                      .+.+|||..||+|..++..++..+ ..+|++.|+|+..++.+++++..++....          ....+.+.+.|+....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            578999999999999998888754 35899999999999999999988763210          0123445555543221


Q ss_pred             -CCCCCccEEEecCCCC--chHHHHHhcCCCCeEEEEeecC
Q psy14962         86 -LHQAPFDAIYLSTYVP--EIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~--~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                       .....||+|.++.--.  .+++...+.++.||.+.++...
T Consensus       124 ~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         124 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence             1245799999985322  2668888899999999887543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.16  E-value=4.7e-06  Score=59.04  Aligned_cols=97  Identities=13%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++|+-+|||+ |..+..+++..+. ..|+++|.+++.++.|++.-.           ..++...-.+..      
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga-----------~~~i~~~~~~~~~~~~~~   92 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGA-----------TDCLNPRELDKPVQDVIT   92 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTC-----------SEEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCC-----------CcccCCccchhhhhhhHh
Confidence            478999999999999 9999999998753 489999999998888876421           122221111111      


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~  121 (216)
                       ...+.+|+++...+.+..+....+.+++| |++++.-
T Consensus        93 ~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          93 ELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             HHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             hhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecC
Confidence             12356999999999998999999999996 9998853

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.6e-06  Score=59.95  Aligned_cols=95  Identities=20%  Similarity=0.164  Sum_probs=70.5

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-CCCCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-TGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~   90 (216)
                      .+++|++|+-+|+|+ |.++..+++..  +++++++|.+++.++.+++.-.         +  .++...-. ........
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGa---------d--~~i~~~~~~~~~~~~~~   93 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGA---------D--EVVNSRNADEMAAHLKS   93 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTC---------S--EEEETTCHHHHHTTTTC
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCC---------c--EEEECchhhHHHHhcCC
Confidence            478999999999988 88999999986  4588899999988777765321         1  22221111 11112356


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|+++...+....+....+.++++|++++.
T Consensus        94 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          94 FDFILNTVAAPHNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred             CceeeeeeecchhHHHHHHHHhcCCEEEEe
Confidence            999999888888888899999999999885

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=7.3e-07  Score=62.95  Aligned_cols=95  Identities=22%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCC-CCCCCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRT-GLLHQA   89 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~-~~~~~~   89 (216)
                      .+++|++|+.+|+|+ |..+..+++..+  ++|+++|.+++.++.+++.-.         +  .++. .+... .....+
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~lGa---------~--~~i~~~~~~~~~~~~~~   90 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGA---------D--HYIATLEEGDWGEKYFD   90 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTC---------S--EEEEGGGTSCHHHHSCS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhccCC---------c--EEeeccchHHHHHhhhc
Confidence            578999999999997 888899998874  599999999999888876421         2  2222 11110 001235


Q ss_pred             CccEEEecCCCCc--hHHHHHhcCCCCeEEEEe
Q psy14962         90 PFDAIYLSTYVPE--IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        90 ~~D~i~~~~~~~~--~~~~~~~~L~~gG~lv~~  120 (216)
                      .+|+++.......  .+....+.++|+|++++.
T Consensus        91 ~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          91 TFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CEEEEEECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred             ccceEEEEecCCccchHHHHHHHhhccceEEEe
Confidence            6999987544322  356778999999999885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.11  E-value=7.7e-06  Score=57.68  Aligned_cols=96  Identities=16%  Similarity=0.075  Sum_probs=71.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-----CCC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-----GLL   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~   86 (216)
                      .+++|++|+-+|+|+ |..+..+++..+. ..|+++|.+++.++.+++...           ..++..+-..     ...
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~ga-----------~~~i~~~~~~~~~~~~~~   96 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLGA-----------DHVVDARRDPVKQVMELT   96 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTTC-----------SEEEETTSCHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhccc-----------ceeecCcccHHHHHHHhh
Confidence            468999999999998 7788888887753 488999999998887775421           1233222110     001


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ....+|+|+...+....++...+.++++|++++.
T Consensus        97 ~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2          97 RGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             TTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             CCCCceEEEEecCcchHHHHHHHHHhCCCEEEEE
Confidence            2346999999998888889999999999999975

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.97  E-value=1.4e-05  Score=55.92  Aligned_cols=95  Identities=13%  Similarity=0.071  Sum_probs=67.1

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CC
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LH   87 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~   87 (216)
                      .+++|++|+-+|+|+ |..+..+++..+  .+|+++|.+++.++.+++.-         .+  .++..+-....    ..
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~G---------a~--~~i~~~~~~~~~~~~~~   90 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLG---------AS--LTVNARQEDPVEAIQRD   90 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT---------CS--EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhccC---------cc--ccccccchhHHHHHHHh
Confidence            478999999999998 888899999864  59999999999988887531         11  22322211100    01


Q ss_pred             CCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         88 QAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        88 ~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ...+|.++........+....+.|+++|++++.
T Consensus        91 ~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          91 IGGAHGVLVTAVSNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             HSSEEEEEECCSCHHHHHHHHTTEEEEEEEEEC
T ss_pred             hcCCcccccccccchHHHHHHHHhcCCcEEEEE
Confidence            133566666666667778889999999999875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.97  E-value=2.8e-05  Score=55.89  Aligned_cols=95  Identities=17%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++||.+|||+ |..+..+++..+ ...|+++|.++..++.|++.-            ............      
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~G------------a~~~~~~~~~~~~~~i~~   88 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQG------------FEIADLSLDTPLHEQIAA   88 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTT------------CEEEETTSSSCHHHHHHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhcc------------ccEEEeCCCcCHHHHHHH
Confidence            478999999999999 778888888765 358999999999998887642            222221111111      


Q ss_pred             -CCCCCccEEEecCCC---------------CchHHHHHhcCCCCeEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYV---------------PEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~---------------~~~~~~~~~~L~~gG~lv~~  120 (216)
                       ..+..+|+++-....               ...++...+.++|||++++.
T Consensus        89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence             123468999876543               23678899999999999885

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.96  E-value=8.3e-06  Score=60.77  Aligned_cols=82  Identities=23%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCC----CCCCeEEEeccCCCCCC-CCCCcc
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLL----NDGRLHLRCRDGRTGLL-HQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~-~~~~~D   92 (216)
                      .+|||..||.|..+..++..   +++|+++|.++......++.+........    ...+++++++|...... ....||
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            48999999999999999987   45999999999877666655443210000    01378999999753332 235699


Q ss_pred             EEEecCCCCc
Q psy14962         93 AIYLSTYVPE  102 (216)
Q Consensus        93 ~i~~~~~~~~  102 (216)
                      +|+.+.+++.
T Consensus       167 vIYlDPMFp~  176 (250)
T d2oyra1         167 VVYLDPMFPH  176 (250)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCcc
Confidence            9999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.87  E-value=3.8e-05  Score=54.14  Aligned_cols=97  Identities=19%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++|+-+|||. |..+..+++..+. ..|+++|.+++.++.+++.-.           ..++...-.+..      
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa-----------~~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGA-----------TECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTC-----------SEEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCC-----------cEEEcCCCchhHHHHHHH
Confidence            478999999999998 7788888888753 489999999999998876421           122321111111      


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCC-CeEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKP-GGRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~-gG~lv~~~  121 (216)
                       ...+.+|+++...............+++ +|.+++.-
T Consensus        92 ~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          92 EKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEE
Confidence             1235699999988888777777766655 58887754

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.86  E-value=2.1e-05  Score=58.08  Aligned_cols=106  Identities=14%  Similarity=0.045  Sum_probs=64.5

Q ss_pred             cCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         13 KIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        13 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .+.++.+|+|+|||+|.++..++... ....|.|.++.-.... .    ... ...+..+-+.+...+.. .......+|
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-~----P~~-~~~~~~ni~~~~~~~dv-~~l~~~~~D  134 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-E----PIP-MSTYGWNLVRLQSGVDV-FFIPPERCD  134 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-C----CCC-CCSTTGGGEEEECSCCT-TTSCCCCCS
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-C----Ccc-ccccccccccchhhhhH-HhcCCCcCC
Confidence            36788899999999999999988763 2347777776322100 0    000 00001112334333322 122356799


Q ss_pred             EEEecCCCC------------chHHHHHhcCCCCeEEEEeecCCCC
Q psy14962         93 AIYLSTYVP------------EIPYSILLQLKPGGRLVCGVGKSKS  126 (216)
Q Consensus        93 ~i~~~~~~~------------~~~~~~~~~L~~gG~lv~~~~~~~~  126 (216)
                      +|+|+.+-.            .+++.+.+.|+|||-|++-+..++.
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~  180 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM  180 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCC
Confidence            999997531            1345666899999999998877653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=3.9e-05  Score=59.50  Aligned_cols=71  Identities=21%  Similarity=0.164  Sum_probs=54.0

Q ss_pred             HHHHHHHhccc----CCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe
Q psy14962          3 QARIIELLEPK----IQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC   78 (216)
Q Consensus         3 ~~~~~~~l~~~----~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (216)
                      +..+++.+...    ...+.+|||+|+|.|.+|..+....++ .+++++|.++......++....        +++.++.
T Consensus        26 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~--------~~~~ii~   96 (322)
T d1i4wa_          26 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEG--------SPLQILK   96 (322)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTT--------SSCEEEC
T ss_pred             HHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccC--------CCcEEEe
Confidence            45566665311    124678999999999999999987543 3899999999999888776533        6789999


Q ss_pred             ccCC
Q psy14962         79 RDGR   82 (216)
Q Consensus        79 ~d~~   82 (216)
                      +|+.
T Consensus        97 ~D~l  100 (322)
T d1i4wa_          97 RDPY  100 (322)
T ss_dssp             SCTT
T ss_pred             Cchh
Confidence            9975

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=4.1e-05  Score=53.36  Aligned_cols=95  Identities=20%  Similarity=0.136  Sum_probs=66.2

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-----   86 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   86 (216)
                      .+++|++||-.|+|+ |.....+++..+  ++|+++|.+++.++.+++.    |        .+...........     
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~----G--------a~~~~~~~~~~~~~~~~~   89 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKEL----G--------ADLVVNPLKEDAAKFMKE   89 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT----T--------CSEEECTTTSCHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhc----C--------cceecccccchhhhhccc
Confidence            478999999999998 778888888854  5899999999998877653    1        1112111111110     


Q ss_pred             CCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         87 HQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        87 ~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ....+|.++.+.+....+....+.++|+|++++.-
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          90 KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECC
T ss_pred             ccCCCceEEeecCCHHHHHHHHHHhccCCceEecc
Confidence            01235555566666778899999999999998853

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.78  E-value=9.1e-06  Score=57.59  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-----   85 (216)
                      .+++|++|+-+|||. |..+..+++..+ ..+|+++|.+++.++.|++.-..           .++. .+.....     
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~GA~-----------~~in~~~~~~~~~~~~~   93 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAVGAT-----------ECISPKDSTKPISEVLS   93 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHHTCS-----------EEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhcCCc-----------EEECccccchHHHHHHH
Confidence            478999999999998 778888888865 35999999999999999876332           1222 1211110     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcC-CCCeEEEEee
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQL-KPGGRLVCGV  121 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L-~~gG~lv~~~  121 (216)
                       .....+|+++...............+ +++|++++.-
T Consensus        94 ~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          94 EMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred             HhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEE
Confidence             12356999999888777665555555 5558888753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.76  E-value=5.2e-05  Score=53.06  Aligned_cols=96  Identities=18%  Similarity=0.165  Sum_probs=69.3

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCC------
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTG------   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~------   84 (216)
                      .++++++|+-+|| |. |..+..+++..+ ...|+++|.+++.++.+++.-.         +  .++..+-.+.      
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~Ga---------~--~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAGA---------D--YVINASMQDPLAEIRR   91 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHHTC---------S--EEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHcCC---------c--eeeccCCcCHHHHHHH
Confidence            4789999999997 54 777777787765 3589999999999888876421         1  2222221110      


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ......+|+|+...+....++...+.++|+|++++.
T Consensus        92 ~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          92 ITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             HTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred             HhhcccchhhhcccccchHHHhhhhhcccCCEEEEe
Confidence            012356999999888887788889999999999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.73  E-value=0.00016  Score=50.70  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~~~~-----   85 (216)
                      .++||++||-.|||. |..+..+++..+ ...|+++|.+++.++.+++.-.           ..++..+ .....     
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~lGa-----------~~~i~~~~~~~~~~~~~~   92 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEFGA-----------TECINPQDFSKPIQEVLI   92 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHHTC-----------SEEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHhCC-----------cEEEeCCchhhHHHHHHH
Confidence            478999999999986 778888888875 3589999999998888876422           1222221 11110     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEeec
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~  122 (216)
                       ...+.+|+|+.........+....++++||.+++...
T Consensus        93 ~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~  130 (176)
T d2fzwa2          93 EMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG  130 (176)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEe
Confidence             1235699999998888888999999999988766543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.8e-05  Score=53.48  Aligned_cols=94  Identities=18%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec-c--CCC---C
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR-D--GRT---G   84 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d--~~~---~   84 (216)
                      .+++|++||-.|+ |+ |..++.+++..  +++|++++.+++..+.+++.    |     .+.  ++.- +  ...   .
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~----G-----a~~--vi~~~~~~~~~~i~~   91 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQN----G-----AHE--VFNHREVNYIDKIKK   91 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT----T-----CSE--EEETTSTTHHHHHHH
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Cccccccccccccccccccc----C-----ccc--ccccccccHHHHhhh
Confidence            4789999999996 54 88889999886  45999999888877776642    2     122  2211 1  100   0


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ......+|+|+.... ...++...++|+|+|+++..
T Consensus        92 ~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          92 YVGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEEC
T ss_pred             hhccCCceEEeeccc-HHHHHHHHhccCCCCEEEEE
Confidence            112456999998766 45677888999999999875

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=2.3e-05  Score=55.11  Aligned_cols=94  Identities=19%  Similarity=0.102  Sum_probs=64.1

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCC
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAP   90 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (216)
                      .+++|++||-.|+ |. |..+..+++..  +++|++++.+++.++.+++.    |     .+.+ +...+..........
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~l----G-----a~~~-i~~~~~~~~~~~~~g   91 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLAL----G-----AEEA-ATYAEVPERAKAWGG   91 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHT----T-----CSEE-EEGGGHHHHHHHTTS
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhccc--cccccccccccccccccccc----c-----ccee-eehhhhhhhhhcccc
Confidence            4789999999885 55 78888899886  45999999888877776653    2     1222 211221111122356


Q ss_pred             ccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         91 FDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        91 ~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|+|+-..+  ..+....++|+|+|+++..
T Consensus        92 ~D~v~d~~G--~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          92 LDLVLEVRG--KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEEECSC--TTHHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc--hhHHHHHHHHhcCCcEEEE
Confidence            999987544  3467788999999999874

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.55  E-value=6.5e-05  Score=52.17  Aligned_cols=96  Identities=20%  Similarity=0.139  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      +..+|+-+|+|. |.-+...++.+  ++.|+.+|.+++.++..+..+..         ++.....+-......-...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhhccCcEE
Confidence            457999999999 88888888887  46999999999999888776543         3444443321111111357999


Q ss_pred             EecCCCCc------hHHHHHhcCCCCeEEEEeec
Q psy14962         95 YLSTYVPE------IPYSILLQLKPGGRLVCGVG  122 (216)
Q Consensus        95 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~  122 (216)
                      |.....+.      +.+++.+.+|||+.++=...
T Consensus       100 I~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         100 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EEeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            98776543      44899999999998875433

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.50  E-value=0.00037  Score=48.75  Aligned_cols=98  Identities=16%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-ccCCCCC-----
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RDGRTGL-----   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-----   85 (216)
                      .+++|++||-+|+|. |.....+++..+ ...|+++|.+++..+.+++...           ..++. .+..+..     
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~Ga-----------~~~i~~~~~~~~~~~~~~   92 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGA-----------TECVNPQDYKKPIQEVLT   92 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTC-----------SEEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhCC-----------eeEEecCCchhHHHHHHH
Confidence            478999999999977 556666777754 4599999999999888876421           12222 1211111     


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCC-eEEEEeec
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPG-GRLVCGVG  122 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  122 (216)
                       ...+.+|+++.....+...+.....++++ |.+++...
T Consensus        93 ~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2          93 EMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             HHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             HHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecC
Confidence             12357999999999988888888888886 55555433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.34  E-value=0.00032  Score=52.53  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      |+.++++..   -.+|+.|||..||+|..+.+..+.   +-+.+|+|+++...+.|++++..
T Consensus       196 L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         196 VIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHH
T ss_pred             HHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHH
Confidence            345555554   378999999999999998877766   45999999999999999999876

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=7.4e-05  Score=52.63  Aligned_cols=95  Identities=16%  Similarity=0.179  Sum_probs=66.9

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEe-cc--CCCC---
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRC-RD--GRTG---   84 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~d--~~~~---   84 (216)
                      .+++|++||-.|+|.  |..+..+++..+  ++|++++.+++..+.+++.-.         +  .++. .+  ....   
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa---------~--~vi~~~~~d~~~~v~~   91 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGA---------W--QVINYREEDLVERLKE   91 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTC---------S--EEEETTTSCHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCC---------e--EEEECCCCCHHHHHHH
Confidence            478999999997765  778899999874  599999999999888775421         2  2222 11  1110   


Q ss_pred             CCCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         85 LLHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        85 ~~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      ...+..+|+|+.... ..........++++|++++.-
T Consensus        92 ~t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          92 ITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECC
T ss_pred             HhCCCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeecc
Confidence            112456898887765 456688899999999987743

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.30  E-value=0.00019  Score=54.79  Aligned_cols=56  Identities=18%  Similarity=0.114  Sum_probs=45.8

Q ss_pred             hHHHHHHHhcccCCCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q psy14962          2 QQARIIELLEPKIQEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMR   63 (216)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~   63 (216)
                      |+.+++....   .+|+.|||..||+|..+.++.+.   +-+.+|+|++++.++.|++++..
T Consensus       239 L~~rlI~~~s---~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         239 LPEFFIRMLT---EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHC---CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHhhhhcc---cCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence            4556666654   78999999999999998876665   45999999999999999887643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=0.0004  Score=48.78  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=64.5

Q ss_pred             cCCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC---CCC--
Q psy14962         13 KIQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR---TGL--   85 (216)
Q Consensus        13 ~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~---~~~--   85 (216)
                      ++++|++||-.|+ |. |..+..+++..+  .+++++..+++..+.+++.    |     .+  .++.-.-.   ...  
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~----G-----a~--~vi~~~~~~~~~~v~~   88 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRL----G-----VE--YVGDSRSVDFADEILE   88 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTT----C-----CS--EEEETTCSTHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccccc----c-----cc--ccccCCccCHHHHHHH
Confidence            4788999999874 44 889999999875  4999988888776666532    2     12  22221111   000  


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                       .....+|+|+....- ..++.+.++|+++|+++..
T Consensus        89 ~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          89 LTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEEC
T ss_pred             HhCCCCEEEEEecccc-hHHHHHHHHhcCCCEEEEE
Confidence             123569999987774 5668888999999999885

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.26  E-value=0.0013  Score=45.74  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             cCCCCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------
Q psy14962         13 KIQEGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------   85 (216)
                      .+++|++|+-+|+|. |..+..+++..+ ...|+++|.+++.++.+++.-.           -.++...-....      
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~GA-----------d~~in~~~~~~~~~~~~~   92 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGA-----------TDFVNPNDHSEPISQVLS   92 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTC-----------CEEECGGGCSSCHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHcCC-----------cEEEcCCCcchhHHHHHH
Confidence            578999999999999 555566666654 4589999999999888876421           123322111111      


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEE
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~  119 (216)
                       .....+|+++........+....+.++++|..++
T Consensus        93 ~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~  127 (175)
T d1cdoa2          93 KMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSV  127 (175)
T ss_dssp             HHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEE
T ss_pred             hhccCCcceeeeecCCHHHHHHHHHHhhCCCccee
Confidence             1124699999998888888888887777644444

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.17  E-value=0.0011  Score=46.56  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             cCCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC-----CC
Q psy14962         13 KIQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT-----GL   85 (216)
Q Consensus        13 ~~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~   85 (216)
                      .+++|++||-.|++.  |..+..+++..  +++|+++..+++..+.+++..         .+.+ +...+...     ..
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~G---------a~~v-i~~~~~~~~~~~~~~   93 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIG---------FDAA-FNYKTVNSLEEALKK   93 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT---------CSEE-EETTSCSCHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhh---------hhhh-cccccccHHHHHHHH
Confidence            478999999988865  77888889986  459999998888776666531         1211 22222110     01


Q ss_pred             CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      .....+|+|+-... ........++|+++|.++..
T Consensus        94 ~~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          94 ASPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HCTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEEC
T ss_pred             hhcCCCceeEEecC-chhhhhhhhhccCCCeEEee
Confidence            12356999998776 45678999999999999874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.15  E-value=0.00054  Score=50.56  Aligned_cols=45  Identities=24%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVM   62 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~   62 (216)
                      .+|+.|||..||+|..+.+..+.   +-+.+|+|++++.++.|++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            78999999999999998876665   4599999999999999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.97  E-value=0.0005  Score=48.26  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc---CCC--------
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD---GRT--------   83 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d---~~~--------   83 (216)
                      +..+|+-+|+|. |..+...|..+  ++.|+++|.++..++..++...+         .+.+...+   .+.        
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~---------~i~~~~~~~~~~~~~~gyA~~~   96 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGK---------FITVDDEAMKTAETAGGYAKEM   96 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCE---------ECCC------------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcc---------eEEEeccccccccccccchhhc
Confidence            457999999999 88888888887  45999999999988877764322         11110000   000        


Q ss_pred             --CCCC---------CCCccEEEecCCCCc------hHHHHHhcCCCCeEEEEe
Q psy14962         84 --GLLH---------QAPFDAIYLSTYVPE------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        84 --~~~~---------~~~~D~i~~~~~~~~------~~~~~~~~L~~gG~lv~~  120 (216)
                        ....         -...|+|+.....+.      +.+++.+.+|||+.++=.
T Consensus        97 s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDv  150 (183)
T d1l7da1          97 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDL  150 (183)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred             CHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEE
Confidence              0000         135799998776643      448999999999998754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.66  E-value=0.00064  Score=47.70  Aligned_cols=98  Identities=12%  Similarity=-0.006  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC--CCCCCC
Q psy14962         14 IQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT--GLLHQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~   89 (216)
                      .++|++||--|++.  |..++.+++..  +++|+++..+++..+.+++...         +.+.-...+...  .....+
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~lGa---------~~vi~~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGA---------KEVLAREDVMAERIRPLDKQ   97 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTC---------SEEEECC---------CCSC
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhccc---------ceeeecchhHHHHHHHhhcc
Confidence            56789999998744  78889999886  5699999888887777765321         222111111111  112346


Q ss_pred             CccEEEecCCCCchHHHHHhcCCCCeEEEEeecC
Q psy14962         90 PFDAIYLSTYVPEIPYSILLQLKPGGRLVCGVGK  123 (216)
Q Consensus        90 ~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  123 (216)
                      .+|+|+-... ...+....++|+++|+++..-..
T Consensus        98 gvD~vid~vg-g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          98 RWAAAVDPVG-GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CEEEEEECST-TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             CcCEEEEcCC-chhHHHHHHHhCCCceEEEeecc
Confidence            7998887655 44678889999999999886443

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.48  E-value=0.0023  Score=47.22  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHhC---C------------------------------------CcEEEEEeCCHHHHH
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELVG---K------------------------------------TGRVFGVEHMREQCE   55 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~~---~------------------------------------~~~v~~~D~~~~~~~   55 (216)
                      ..+..++|-.||+|.+.++.+....   |                                    ...++|.|.++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            3445799999999999988775310   0                                    124577888888888


Q ss_pred             HHH---HHHHHhCCCCCCCCCeEEEeccCCCCCC-----CCCCccEEEecCCCCc---------------hHHHHHhcCC
Q psy14962         56 DAW---ETVMRIRPDLLNDGRLHLRCRDGRTGLL-----HQAPFDAIYLSTYVPE---------------IPYSILLQLK  112 (216)
Q Consensus        56 ~a~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~---------------~~~~~~~~L~  112 (216)
                      .|+   +++...++    ...+.+...|+.....     .....++|+++.+..+               +...+.+.+.
T Consensus       129 ~A~~~r~n~~~Agl----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p  204 (249)
T d1o9ga_         129 AARRLRERLTAEGG----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP  204 (249)
T ss_dssp             HHHHHHHHHHHTTS----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCC----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence            774   46777665    3668888888753221     2345789999999632               2345667776


Q ss_pred             CCeEEEEe
Q psy14962        113 PGGRLVCG  120 (216)
Q Consensus       113 ~gG~lv~~  120 (216)
                      ....++++
T Consensus       205 ~~s~~~it  212 (249)
T d1o9ga_         205 AHAVIAVT  212 (249)
T ss_dssp             TTCEEEEE
T ss_pred             CCcEEEEe
Confidence            65666664

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.47  E-value=0.0081  Score=41.26  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=54.6

Q ss_pred             eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|+-+|||. |. ++..+.+. +...+|++.|.+++.++.+++.           ..+.....+...  ......|+|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~-----------~~~~~~~~~~~~--~~~~~~dlIil   68 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL-----------GIIDEGTTSIAK--VEDFSPDFVML   68 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT-----------TSCSEEESCGGG--GGGTCCSEEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh-----------hcchhhhhhhhh--hhccccccccc
Confidence            688899977 44 33333333 4445899999999998888753           112222222111  11234799998


Q ss_pred             cCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         97 STYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        97 ~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+...   .+..+...++++..++-.
T Consensus        69 a~p~~~~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          69 SSPVRTFREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCchhhhhhhhhhhcccccccccccc
Confidence            888654   556778888887666543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.91  E-value=0.013  Score=41.01  Aligned_cols=98  Identities=10%  Similarity=0.047  Sum_probs=58.8

Q ss_pred             cCCCCCeEEEEcC--C-CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEec---cCCCCC-
Q psy14962         13 KIQEGAKVLDIGS--G-SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCR---DGRTGL-   85 (216)
Q Consensus        13 ~~~~~~~vldiG~--G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---d~~~~~-   85 (216)
                      .+++|.+|+-+.+  | .|..++.+++..+  ++|+++--+++..+...+.+.+.|     .+.  ++.-   +..... 
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lG-----ad~--vi~~~~~~~~~~~~   95 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELG-----ATQ--VITEDQNNSREFGP   95 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHT-----CSE--EEEHHHHHCGGGHH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhcc-----ccE--EEeccccchhHHHH
Confidence            4688988888733  3 2677888899874  588887544444444444444433     122  2221   211100 


Q ss_pred             -------CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 -------LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -------~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                             ...+.+|+|+-... ........++|+++|+++..
T Consensus        96 ~v~~~~~~~g~~vdvv~D~vg-~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          96 TIKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHHHTCCEEEEEESSC-HHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHhhccCCceEEEECCC-cchhhhhhhhhcCCcEEEEE
Confidence                   01346898886544 44557788999999999874

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.036  Score=38.55  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             CCCC--CeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----
Q psy14962         14 IQEG--AKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----   85 (216)
Q Consensus        14 ~~~~--~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----   85 (216)
                      +++|  ++||-.|+ |. |..++.+++..+. ..|+++..+++......+.+   +     .+  .++.-.-....    
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~~---g-----ad--~vi~~~~~~~~~~~~   94 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSEL---G-----FD--AAVNYKTGNVAEQLR   94 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHHS---C-----CS--EEEETTSSCHHHHHH
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhcc---c-----ce--EEeeccchhHHHHHH
Confidence            5666  78998884 44 9999999998753 36777776766544433221   1     11  22222111000    


Q ss_pred             -CCCCCccEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         86 -LHQAPFDAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                       .....+|+|+-... ...+....++|+++|+++..
T Consensus        95 ~~~~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          95 EACPGGVDVYFDNVG-GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHCTTCEEEEEESSC-HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHhccCceEEEecCC-chhHHHHhhhccccccEEEe
Confidence             11346999987665 45678889999999999864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=95.63  E-value=0.02  Score=39.32  Aligned_cols=95  Identities=17%  Similarity=0.134  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcC-CC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCC-C--CCCCC
Q psy14962         14 IQEGAKVLDIGS-GS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGR-T--GLLHQ   88 (216)
Q Consensus        14 ~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~-~--~~~~~   88 (216)
                      .+++.+||--|+ |. |.+++.+|+..+  ++|+++.-+++..+.+++.-.         +.+ +...|.. .  .....
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~lGa---------d~v-i~~~~~~~~~~~~~~~   88 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQLGA---------SEV-ISREDVYDGTLKALSK   88 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHHHTC---------SEE-EEHHHHCSSCCCSSCC
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHhhcc---------cce-EeccchhchhhhcccC
Confidence            345667887775 33 889999999975  599999988887777665421         222 2222211 1  11234


Q ss_pred             CCccEEEecCCCCchHHHHHhcCCCCeEEEEee
Q psy14962         89 APFDAIYLSTYVPEIPYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        89 ~~~D~i~~~~~~~~~~~~~~~~L~~gG~lv~~~  121 (216)
                      +.+|+|+-... ...+....+.|+++|+++..-
T Consensus        89 ~gvd~vid~vg-g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          89 QQWQGAVDPVG-GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             CCEEEEEESCC-THHHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEecCc-HHHHHHHHHHhccCceEEEee
Confidence            57998876654 556688999999999998853

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.08  Score=38.73  Aligned_cols=80  Identities=14%  Similarity=0.048  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      +|+.+|-.|++.|. +..+++.+ ..+++|+.++.+++.++.+.+.+...+.    ..++.++.+|+.....        
T Consensus         9 k~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           9 RDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY----PGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEEccCCCHHHHHHHHHHH
Confidence            47788999987654 33333332 2367999999999998888887776431    2467788899863220        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        84 ~~~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          84 RSQHSGVDICINNAGL   99 (257)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             HHhcCCCCEEEecccc
Confidence              12678999887764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.016  Score=40.21  Aligned_cols=91  Identities=14%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCC--CchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEecc-CC-CCCCCCCCc
Q psy14962         16 EGAKVLDIGSG--SGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRD-GR-TGLLHQAPF   91 (216)
Q Consensus        16 ~~~~vldiG~G--~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d-~~-~~~~~~~~~   91 (216)
                      ++.+||-.|+.  .|..++.+++..  +++|+++..+++..+.+++...         +  .++.-+ .. ........+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~lGa---------d--~vi~~~~~~~~~~l~~~~~   97 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSLGA---------S--RVLPRDEFAESRPLEKQVW   97 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTE---------E--EEEEGGGSSSCCSSCCCCE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhhcc---------c--cccccccHHHHHHHHhhcC
Confidence            34577766653  378889999996  4599999989888777765321         1  222222 11 111233557


Q ss_pred             cEEEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         92 DAIYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        92 D~i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      |.|+ +......+....+.|+++|+++..
T Consensus        98 ~~vv-D~Vgg~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2          98 AGAI-DTVGDKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             EEEE-ESSCHHHHHHHHHTEEEEEEEEEC
T ss_pred             CeeE-EEcchHHHHHHHHHhccccceEee
Confidence            8765 555566778899999999999885

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.058  Score=39.85  Aligned_cols=98  Identities=14%  Similarity=0.049  Sum_probs=68.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG--KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      |.+|.-|-.|++.++..+++.+.  .+..|+..+.+++.++.+.+.+...+      .++.++.+|+.+...        
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHHH
Confidence            67886666666666666655442  25699999999999998888887754      568899999863221        


Q ss_pred             --CCCCccEEEecCCCCc-------------------------hHHHHHhcCCCCeEEEEe
Q psy14962         87 --HQAPFDAIYLSTYVPE-------------------------IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        87 --~~~~~D~i~~~~~~~~-------------------------~~~~~~~~L~~gG~lv~~  120 (216)
                        ..+.+|+++.+.+...                         +.+.+...|+++|+++..
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence              1267999999887521                         124556777888887764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.07  E-value=0.055  Score=36.63  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|.-||+|. |. ++..+.+.   +.+|++.|.+++.++.+++.           ..+.....+..    .-...|+|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~---g~~V~~~d~~~~~~~~a~~~-----------~~~~~~~~~~~----~~~~~DiIil   63 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR---GHYLIGVSRQQSTCEKAVER-----------QLVDEAGQDLS----LLQTAKIIFL   63 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHT-----------TSCSEEESCGG----GGTTCSEEEE
T ss_pred             EEEEEeecHHHHHHHHHHHHC---CCEEEEEECCchHHHHHHHh-----------hccceeeeecc----cccccccccc
Confidence            577788765 33 33333333   56999999999888776542           11211111211    1235799998


Q ss_pred             cCCCCc---hHHHHHhcCCCCeEEEEe
Q psy14962         97 STYVPE---IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        97 ~~~~~~---~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+...   +++++...++++..++-.
T Consensus        64 avp~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          64 CTPIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             CSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             cCcHhhhhhhhhhhhhhcccccceeec
Confidence            776543   557777778888766543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.82  E-value=0.039  Score=35.03  Aligned_cols=94  Identities=14%  Similarity=-0.033  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCcc
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVE--HMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFD   92 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   92 (216)
                      .|.+||-+|.|. |.--...+..  .+++|+.++  .+++....+.            ..++.+..........  ..++
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~dl--~~~~   74 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALTFIPQFTVWAN------------EGMLTLVEGPFDETLL--DSCW   74 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESSCCHHHHHHHT------------TTSCEEEESSCCGGGG--TTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCChHHHHHHh------------cCCceeeccCCCHHHh--CCCc
Confidence            588999999988 4333333333  255776664  4444433221            1457777666543322  3478


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +|+....-+.+-..+.+..++.|.++=....|.
T Consensus        75 lv~~at~d~~~n~~i~~~a~~~~ilVNv~D~p~  107 (113)
T d1pjqa1          75 LAIAATDDDTVNQRVSDAAESRRIFCNVVDAPK  107 (113)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCEEEETTCTT
T ss_pred             EEeecCCCHHHHHHHHHHHHHcCCEEEeCCChh
Confidence            999888877777888888889998887665554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.74  E-value=0.11  Score=38.76  Aligned_cols=69  Identities=14%  Similarity=-0.002  Sum_probs=47.2

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC-CCCccEEEec
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH-QAPFDAIYLS   97 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~   97 (216)
                      +|+|+.||.|.+...+-+. |- --+.++|+++...+.-+.+.           .-.++.+|....... -...|+++.+
T Consensus         2 k~~~lF~G~Gg~~~gl~~a-G~-~~~~a~e~d~~a~~~~~~N~-----------~~~~~~~Di~~~~~~~~~~~dll~~g   68 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA-GF-RIICANEYDKSIWKTYESNH-----------SAKLIKGDISKISSDEFPKCDGIIGG   68 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH-TC-EEEEEEECCHHHHHHHHHHC-----------CSEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred             eEEEeCcCcCHHHHHHHHC-CC-EEEEEEeCCHHHHHHHHHHC-----------CCCCccCChhhCCHhHcccccEEeec
Confidence            6999999999998877655 22 24568999998766555442           235677887644322 2468999887


Q ss_pred             CCC
Q psy14962         98 TYV  100 (216)
Q Consensus        98 ~~~  100 (216)
                      .+-
T Consensus        69 ~PC   71 (324)
T d1dcta_          69 PPC   71 (324)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            774

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.58  E-value=0.31  Score=31.39  Aligned_cols=92  Identities=11%  Similarity=0.039  Sum_probs=54.3

Q ss_pred             eEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCccE
Q psy14962         19 KVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPFDA   93 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~   93 (216)
                      +|+-+|+|.  .+..+++.+. .+..|+.+|.+++.++.+.+.           ....++.+|.....    ..-..+|.
T Consensus         2 ~IvI~G~G~--~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-----------~~~~vi~Gd~~~~~~l~~~~i~~a~~   68 (132)
T d1lssa_           2 YIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----------IDALVINGDCTKIKTLEDAGIEDADM   68 (132)
T ss_dssp             EEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             EEEEECCCH--HHHHHHHHHHHCCCCcceecCChhhhhhhhhh-----------hhhhhccCcccchhhhhhcChhhhhh
Confidence            577777754  5555554431 246999999999988766543           24678889976322    11245788


Q ss_pred             EEecCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++......   +.....+.+.+... +..+.++
T Consensus        69 vv~~t~~d~~N~~~~~~~k~~~~~~i-I~~~~~~  101 (132)
T d1lssa_          69 YIAVTGKEEVNLMSSLLAKSYGINKT-IARISEI  101 (132)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCCCE-EEECSST
T ss_pred             hcccCCcHHHHHHHHHHHHHcCCceE-EEEecCH
Confidence            887554432   22444556666633 3433333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.84  E-value=0.45  Score=32.09  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=53.2

Q ss_pred             CeEEEEcCCC-chHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccC--CCCCC-CCCCcc
Q psy14962         18 AKVLDIGSGS-GFMS-CVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDG--RTGLL-HQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~-G~~~-~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-~~~~~D   92 (216)
                      .+|.-+|+|. |... ..+++.   +.+|+..|.+++.++..++.-....    ............  ..... .-..+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK---GQSVLAWDIDAQRIKEIQDRGAIIA----EGPGLAGTAHPDLLTSDIGLAVKDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHTSEEE----ESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHcCCCch----hhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence            5788999988 4433 333433   4699999999988776654311000    000000000000  00000 014589


Q ss_pred             EEEecCCCC---chHHHHHhcCCCCeEEEEe
Q psy14962         93 AIYLSTYVP---EIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        93 ~i~~~~~~~---~~~~~~~~~L~~gG~lv~~  120 (216)
                      +|++.-+..   ..++++...++++..+++.
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence            999876554   3567888899998876653

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=93.41  E-value=0.15  Score=39.86  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHhC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELVGK-TGRVFGVEHMREQCEDAWETVMRIR   65 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~   65 (216)
                      +.++..++|+||-.|..+..+++.... ..+|+++|+++...+..++++....
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            456789999999999999888776532 3589999999999999999887643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.24  Score=36.02  Aligned_cols=78  Identities=10%  Similarity=0.037  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++. .++..+++.+ ..+++|+.+|.+++.++.+.+.+...+      .++.++.+|+.+...        
T Consensus        10 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_          10 DGKCAIITGAGA-GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence            577777666554 4555555444 236799999999999888888777644      578888999863210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        83 ~~~~g~iDilvnnAG~   98 (255)
T d1fmca_          83 ISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHHcCCCCEeeeCCcC
Confidence              11679999887664

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.51  E-value=0.28  Score=35.54  Aligned_cols=78  Identities=12%  Similarity=0.143  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      +++.+|-.|++. .++..+++.+. .+++|+.+|.+++.++.+.+.+...+      .++..+.+|+.+..         
T Consensus         9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence            466677777655 46666666653 35699999999999988888776643      56888899986321         


Q ss_pred             -CCCCCccEEEecCCC
Q psy14962         86 -LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~  100 (216)
                       ...+..|+++.+...
T Consensus        82 ~~~~g~iDilvnnag~   97 (251)
T d2c07a1          82 LTEHKNVDILVNNAGI   97 (251)
T ss_dssp             HHHCSCCCEEEECCCC
T ss_pred             HHhcCCceeeeecccc
Confidence             112679999887664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.04  E-value=0.31  Score=35.34  Aligned_cols=78  Identities=14%  Similarity=0.076  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEE-eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGV-EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .|++||-.|++ +.++..+++.+. .+++|+.. ..+++.++.+.+.+.+.+      .++.++..|+.....       
T Consensus         5 ~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           5 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC------CCceEecCCCCCHHHHHHHHHH
Confidence            57888877755 544444444332 25688765 667777788777777754      578889999753210       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        78 ~~~~~g~idilinnag~   94 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGM   94 (259)
T ss_dssp             HHHHHSCEEEEECCCCC
T ss_pred             HHHHcCCCcEEEecccc
Confidence               12679999987775

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.03  E-value=0.14  Score=38.43  Aligned_cols=70  Identities=13%  Similarity=-0.018  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-CCCCccE
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-HQAPFDA   93 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~   93 (216)
                      .+.+|+|+.||.|.++..+-+.   +.+ +.++|.++...+.-+.+...            ..++|...... .-..+|+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~~------------~~~~Di~~~~~~~~~~~Dl   74 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGE------------KPEGDITQVNEKTIPDHDI   74 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSC------------CCBSCGGGSCGGGSCCCSE
T ss_pred             CCCeEEEECccccHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCCC------------CCcCchhcCchhhcceeee
Confidence            5689999999999998877654   334 56689999888777666422            12455543221 1245899


Q ss_pred             EEecCCC
Q psy14962         94 IYLSTYV  100 (216)
Q Consensus        94 i~~~~~~  100 (216)
                      ++.+.+-
T Consensus        75 l~ggpPC   81 (327)
T d2c7pa1          75 LCAGFPC   81 (327)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9877763

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.91  E-value=0.46  Score=36.38  Aligned_cols=104  Identities=15%  Similarity=0.054  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCchHHH-------HHHHH--------hCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe--EEEecc
Q psy14962         18 AKVLDIGSGSGFMSC-------VFAEL--------VGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL--HLRCRD   80 (216)
Q Consensus        18 ~~vldiG~G~G~~~~-------~l~~~--------~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~d   80 (216)
                      -+|+|+||.+|.-+.       ...+.        -.|..+|+--|....--...-+.+....   ....++  .-+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~---~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN---DVDGVCFINGVPGS  129 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC---SCTTCEEEEEEESC
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc---cCCCCeEEEecCCc
Confidence            458999999997663       22211        1234577777876543222222221110   001122  223345


Q ss_pred             CCCCCCCCCCccEEEecCCCCch---------------------------------------HHHHHhcCCCCeEEEEee
Q psy14962         81 GRTGLLHQAPFDAIYLSTYVPEI---------------------------------------PYSILLQLKPGGRLVCGV  121 (216)
Q Consensus        81 ~~~~~~~~~~~D~i~~~~~~~~~---------------------------------------~~~~~~~L~~gG~lv~~~  121 (216)
                      +-....+.++.|++++...++|+                                       ++.=.+-|+|||+++++.
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            55566677889999988877552                                       122236899999999976


Q ss_pred             cCC
Q psy14962        122 GKS  124 (216)
Q Consensus       122 ~~~  124 (216)
                      ...
T Consensus       210 ~gr  212 (359)
T d1m6ex_         210 LGR  212 (359)
T ss_dssp             EEC
T ss_pred             ecc
Confidence            544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.36  E-value=0.33  Score=31.16  Aligned_cols=92  Identities=11%  Similarity=0.008  Sum_probs=51.7

Q ss_pred             eEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCccE
Q psy14962         19 KVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFDA   93 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~   93 (216)
                      +++-+|+|.  ++..+++.+. .+..|+.+|.+++.++.++.            ....++.+|......    .-...|.
T Consensus         2 ~~iIiG~G~--~G~~la~~L~~~g~~vvvid~d~~~~~~~~~------------~~~~~~~gd~~~~~~l~~a~i~~a~~   67 (134)
T d2hmva1           2 QFAVIGLGR--FGGSIVKELHRMGHEVLAVDINEEKVNAYAS------------YATHAVIANATEENELLSLGIRNFEY   67 (134)
T ss_dssp             CEEEECCSH--HHHHHHHHHHHTTCCCEEEESCHHHHHHTTT------------TCSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred             EEEEECCCH--HHHHHHHHHHHCCCeEEEecCcHHHHHHHHH------------hCCcceeeecccchhhhccCCccccE
Confidence            456666655  4444444331 24589999999998876642            224567788754321    1135787


Q ss_pred             EEecCCCCc---hHHHHHhcCCCCeEEEEeecCC
Q psy14962         94 IYLSTYVPE---IPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        94 i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      +++..+-..   ....+.+.+.+...++......
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~  101 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKELDIPNIWVKAQNY  101 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred             EEEEcCchHHhHHHHHHHHHHcCCCcEEeecccH
Confidence            777655432   2233334445556666644433

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.24  E-value=0.48  Score=36.32  Aligned_cols=46  Identities=17%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHHH
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG------KTGRVFGVEHMREQCEDAWETVM   62 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~------~~~~v~~~D~~~~~~~~a~~~~~   62 (216)
                      ...|+|+|+|+|.++..+++.+.      ...+++.+|.|+...+.-++.+.
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            35799999999999988876543      12468999999998777666554

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.14  Score=38.51  Aligned_cols=73  Identities=21%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCC---CCCcc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVGKTGR-VFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLH---QAPFD   92 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D   92 (216)
                      ..+|+|+.||.|.+...+-+. |-..+ +.++|+++...+.-+.+.          +...++..|.......   ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~----------~~~~~~~~di~~~~~~~~~~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF----------PHTQLLAKTIEGITLEEFDRLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC----------TTSCEECSCGGGCCHHHHHHHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC----------CCCCcccCchhhCCHhHcCCCCcc
Confidence            357999999999988776554 32233 678999998776655542          2345666776533221   13589


Q ss_pred             EEEecCCC
Q psy14962         93 AIYLSTYV  100 (216)
Q Consensus        93 ~i~~~~~~  100 (216)
                      +++.+.+-
T Consensus        71 ll~ggpPC   78 (343)
T d1g55a_          71 MILMSPPC   78 (343)
T ss_dssp             EEEECCC-
T ss_pred             EEEeeccc
Confidence            99877774

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.90  E-value=0.5  Score=34.18  Aligned_cols=77  Identities=18%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----------
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----------   85 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------   85 (216)
                      |+.+|--|++. .++..+++.+. .+++|+.+|.+++.++.+.+.+...+      .++.++.+|+.+..          
T Consensus         2 gKValITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvs~~~~v~~~~~~~~   74 (257)
T d2rhca1           2 SEVALVTGATS-GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG------VEADGRTCDVRSVPEIEALVAAVV   74 (257)
T ss_dssp             CCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeecCCHHHHHHHHHHHH
Confidence            44556667654 44444444432 35799999999999988888777644      57888999975321          


Q ss_pred             CCCCCccEEEecCCC
Q psy14962         86 LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~  100 (216)
                      ...++.|+++.+.+.
T Consensus        75 ~~~g~iDilVnnAG~   89 (257)
T d2rhca1          75 ERYGPVDVLVNNAGR   89 (257)
T ss_dssp             HHTCSCSEEEECCCC
T ss_pred             HHhCCCCEEEecccc
Confidence            112679999987664

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.89  E-value=0.56  Score=34.00  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCCch---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC------
Q psy14962         16 EGAKVLDIGSGSGF---MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~---~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------   86 (216)
                      .|+++|-.|++.|.   .+..+++.   +++|+.+|.+++.++.+.+.+...+.    ..++..+.+|+.+...      
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~l~~~~~~~~~~~~----~~~~~~~~~Dvt~~~~v~~~~~   75 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE---GAKLSLVDVSSEGLEASKAAVLETAP----DAEVLTTVADVSDEAQVEAYVT   75 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHCT----TCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhhCC----CCeEEEEeccCCCHHHHHHHHH
Confidence            47788888877653   23333433   67999999999998887776655331    3467888899753221      


Q ss_pred             ----CCCCccEEEecCCC
Q psy14962         87 ----HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ----~~~~~D~i~~~~~~  100 (216)
                          ..+..|+++.+...
T Consensus        76 ~~~~~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          76 ATTERFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHHHHHSCCSEEEECCCC
T ss_pred             HHHHHhCCCCEEEECCcc
Confidence                11678999987653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.78  E-value=1.1  Score=32.50  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM-REQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL--------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------   85 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.++.+ ++.++...+.+.+.+      .++.++.+|.....        
T Consensus        17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC------CceeeEeCCCCCHHHHHHHHHH
Confidence            4778888887665 333333332 125699999876 556666666666644      56888888875321        


Q ss_pred             --CCCCCccEEEecCCC
Q psy14962         86 --LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 --~~~~~~D~i~~~~~~  100 (216)
                        ...+..|+++.+...
T Consensus        90 ~~~~~g~idilV~nag~  106 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGV  106 (272)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCCcccccccc
Confidence              012678999877664

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.56  E-value=0.8  Score=32.84  Aligned_cols=76  Identities=17%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCch---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGF---MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL-------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~---~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------   85 (216)
                      .|+.+|--|++.|.   ++..+++.   +++|+.+|.+++.++...+.+...+      .++..+.+|+.+..       
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~---G~~V~l~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~   76 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKL---KSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSNREDIYSSAK   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHH
Confidence            47788888887763   33444443   6799999999999988888777644      57888999986321       


Q ss_pred             ---CCCCCccEEEecCCC
Q psy14962         86 ---LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 ---~~~~~~D~i~~~~~~  100 (216)
                         ...+..|+++.+...
T Consensus        77 ~i~~~~g~idilinnag~   94 (244)
T d1yb1a_          77 KVKAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHHHTCCCSEEEECCCC
T ss_pred             HHHHHcCCCceeEeeccc
Confidence               123678999987775

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.54  E-value=0.78  Score=33.16  Aligned_cols=78  Identities=14%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|-.|+..| ++..+++.+ ..+++|+.++.+++.++.+.+.+...+      .++.++.+|+....         
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeecCCHHHHHHHHHHH
Confidence            5888999988654 333333322 226799999999999888888877654      56778889975321         


Q ss_pred             C--CCCCccEEEecCCC
Q psy14962         86 L--HQAPFDAIYLSTYV  100 (216)
Q Consensus        86 ~--~~~~~D~i~~~~~~  100 (216)
                      .  ..+..|+++.+...
T Consensus        78 ~~~~~g~idilinnag~   94 (258)
T d1ae1a_          78 AHVFDGKLNILVNNAGV   94 (258)
T ss_dssp             HHHTTSCCCEEEECCCC
T ss_pred             HHHhCCCcEEEeccccc
Confidence            0  12468888876664

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.49  E-value=0.51  Score=34.07  Aligned_cols=79  Identities=13%  Similarity=0.014  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.+..     ..++..+.+|+.....        
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4788888887765 333333332 126799999999988877666554322     2567888899753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        78 ~~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          78 KEKFGKLDTVVNAAGI   93 (251)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence              11579999987764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.39  E-value=0.73  Score=33.33  Aligned_cols=77  Identities=16%  Similarity=0.063  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.|. +..+++.+ ..+++|+.+|.+++.++.+.+.+...+      .++..+.+|+.....        
T Consensus         4 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKG------VEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------SCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence            57888888876653 33333332 126799999999999988888777644      568888899763210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+..|+++.+..
T Consensus        77 ~~~~g~iDilVnnaG   91 (260)
T d1zema1          77 VRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCeehhhhc
Confidence              1167899987655

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.15  E-value=0.36  Score=33.25  Aligned_cols=75  Identities=8%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCch---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---CCCC
Q psy14962         16 EGAKVLDIGSGSGF---MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---LHQA   89 (216)
Q Consensus        16 ~~~~vldiG~G~G~---~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~   89 (216)
                      .|++||-.|++.|.   .+..+++.   +++|+.++.+++.++...+.+...       .++.+...|.....   ..-+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~   91 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGE---GAEVVLCGRKLDKAQAAADSVNKR-------FKVNVTAAETADDASRAEAVK   91 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHH-------HTCCCEEEECCSHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhh---ccchhhcccchHHHHHHHHHHHhc-------cchhhhhhhcccHHHHHHHhc
Confidence            68899999876542   22333333   569999999999888777766553       23445555543211   1124


Q ss_pred             CccEEEecCCC
Q psy14962         90 PFDAIYLSTYV  100 (216)
Q Consensus        90 ~~D~i~~~~~~  100 (216)
                      ..|+++.+.+.
T Consensus        92 ~iDilin~Ag~  102 (191)
T d1luaa1          92 GAHFVFTAGAI  102 (191)
T ss_dssp             TCSEEEECCCT
T ss_pred             CcCeeeecCcc
Confidence            68999987654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.02  E-value=0.56  Score=33.83  Aligned_cols=74  Identities=15%  Similarity=-0.016  Sum_probs=49.8

Q ss_pred             EEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----------CCC
Q psy14962         20 VLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----------LHQ   88 (216)
Q Consensus        20 vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~   88 (216)
                      +|--|++. .++..+++.+ ..+++|+.+|.+++.++.+.+.+...+      .++.++.+|+.+..          ...
T Consensus         4 alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g------~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           4 ALVTGAGQ-GIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG------GHAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             EEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             EEEcCCcc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45566554 4444444433 236799999999999988888777644      57888889986321          112


Q ss_pred             CCccEEEecCCC
Q psy14962         89 APFDAIYLSTYV  100 (216)
Q Consensus        89 ~~~D~i~~~~~~  100 (216)
                      +..|+++.+...
T Consensus        77 g~iDilVnnAG~   88 (255)
T d1gega_          77 GGFDVIVNNAGV   88 (255)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCccEEEecccc
Confidence            679999987664

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.58  Score=30.77  Aligned_cols=98  Identities=11%  Similarity=0.021  Sum_probs=57.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC----CCCCcc
Q psy14962         18 AKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL----HQAPFD   92 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D   92 (216)
                      .+|+-+|+|.  .+..+++.+. .+..++.+|.+++......+....        ..+.++.+|......    .-...|
T Consensus         4 nHiII~G~g~--~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--------~~~~vi~Gd~~d~~~L~~a~i~~a~   73 (153)
T d1id1a_           4 DHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDSSVLKKAGIDRCR   73 (153)
T ss_dssp             SCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSHHHHHHHTTTTCS
T ss_pred             CEEEEECCCH--HHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--------CCcEEEEccCcchHHHHHhccccCC
Confidence            4678888865  4434433321 245899999988754433333322        468899999763221    124578


Q ss_pred             EEEecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         93 AIYLSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        93 ~i~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .+++...-..   ......+.+.|...++..+..+.
T Consensus        74 ~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          74 AILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             EEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence            8887655432   22344456678877777666554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.38  Score=33.34  Aligned_cols=100  Identities=12%  Similarity=-0.015  Sum_probs=56.6

Q ss_pred             CeEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-------CCCCC----------CCCCeEEEe
Q psy14962         18 AKVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRI-------RPDLL----------NDGRLHLRC   78 (216)
Q Consensus        18 ~~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-------~~~~~----------~~~~~~~~~   78 (216)
                      .+|.-+|+|+ |.- +..++..   +..|+..|.+++.++.+.+++.+.       +....          ...++.+. 
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~---G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-   80 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT---GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-   80 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred             EEEEEECcCHHHHHHHHHHHhC---CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-
Confidence            5889999988 443 3333433   569999999999998887765431       10000          00011111 


Q ss_pred             ccCCCCCCCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecCC
Q psy14962         79 RDGRTGLLHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        79 ~d~~~~~~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      .|...   .-...|+|+...+-.     .++.++.++++++..+.-.+...
T Consensus        81 ~d~~~---a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l  128 (192)
T d1f0ya2          81 TDAAS---VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL  128 (192)
T ss_dssp             SCHHH---HTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred             chhHh---hhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc
Confidence            11100   113468888765532     25567777888887776654433

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.33  E-value=0.36  Score=34.91  Aligned_cols=77  Identities=13%  Similarity=0.121  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+..       ..++.++.+|+.+...        
T Consensus         5 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4777777776554 444444333 1367999999999888777666533       3578889999863221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        77 ~~~~G~iDiLVnnAg~   92 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHHhCCceEEEecccc
Confidence              12678999887664

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.14  E-value=1  Score=32.44  Aligned_cols=78  Identities=13%  Similarity=0.146  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|-.|++.| ++..+++.+. .+++|+.+|.+++.++.+.+.+...+      .++.++.+|+.+..         
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeeCCCHHHHHHHHHHH
Confidence            5788888887654 3434443331 25799999999999988888777643      56778888875311         


Q ss_pred             -CC-CCCccEEEecCCC
Q psy14962         86 -LH-QAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~-~~~~D~i~~~~~~  100 (216)
                       .. .++.|+++.+...
T Consensus        80 ~~~~~~~idilvnnAG~   96 (259)
T d2ae2a_          80 ANHFHGKLNILVNNAGI   96 (259)
T ss_dssp             HHHTTTCCCEEEECCCC
T ss_pred             HHHhCCCceEEEECCce
Confidence             01 2368999987664

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.94  E-value=2  Score=28.00  Aligned_cols=88  Identities=16%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             eEEEEcCCC-ch-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GF-MSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|.-||||. |. +...+.+. + ..+++..|.+++.++...+.           ..+... .+.. .   -...|+|+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~-~-~~~i~v~~r~~~~~~~l~~~-----------~~~~~~-~~~~-~---v~~~Div~l   63 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQ-G-GYRIYIANRGAEKRERLEKE-----------LGVETS-ATLP-E---LHSDDVLIL   63 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-C-SCEEEEECSSHHHHHHHHHH-----------TCCEEE-SSCC-C---CCTTSEEEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-C-CCcEEEEeCChhHHHHhhhh-----------cccccc-cccc-c---ccccceEEE
Confidence            567788877 44 23334444 2 25999999999877665443           123332 2211 1   123699987


Q ss_pred             cCCCCchHHHHHhcCCCCeEEEEeecCCC
Q psy14962         97 STYVPEIPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        97 ~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      .-. +.....+.+-+++.+.++++.....
T Consensus        64 avk-P~~~~~v~~~l~~~~~~viS~~ag~   91 (152)
T d1yqga2          64 AVK-PQDMEAACKNIRTNGALVLSVAAGL   91 (152)
T ss_dssp             CSC-HHHHHHHHTTCCCTTCEEEECCTTC
T ss_pred             ecC-HHHHHHhHHHHhhcccEEeecccCC
Confidence            654 4445666677777777877765543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.94  E-value=0.75  Score=33.37  Aligned_cols=76  Identities=9%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+..       ..++.++.+|+.+..         
T Consensus         5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHHH
Confidence            5788888887765 444444333 2367999999999988877766644       246788888975321         


Q ss_pred             -CCCCCccEEEecCC
Q psy14962         86 -LHQAPFDAIYLSTY   99 (216)
Q Consensus        86 -~~~~~~D~i~~~~~   99 (216)
                       ...+..|+++.+..
T Consensus        77 ~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          77 IAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCcceeccccc
Confidence             01267899997665

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.93  E-value=0.63  Score=29.66  Aligned_cols=91  Identities=8%  Similarity=-0.036  Sum_probs=58.0

Q ss_pred             EEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC----CCCCCccEEE
Q psy14962         20 VLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL----LHQAPFDAIY   95 (216)
Q Consensus        20 vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~i~   95 (216)
                      |+-+  |.|..+..+++.+. +..++.+|.++...+..+.            ..+.++.+|.....    ..-..++.++
T Consensus         3 ivI~--G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~------------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           3 VVIC--GWSESTLECLRELR-GSEVFVLAEDENVRKKVLR------------SGANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             EEEE--SCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH------------TTCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             EEEE--CCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh------------cCccccccccCCHHHHHHhhhhcCcEEE
Confidence            4444  45667888888764 4578899999988765532            35788999976322    1124577787


Q ss_pred             ecCCCCc---hHHHHHhcCCCCeEEEEeecCCC
Q psy14962         96 LSTYVPE---IPYSILLQLKPGGRLVCGVGKSK  125 (216)
Q Consensus        96 ~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~  125 (216)
                      +...-..   ......+.+.|...++..+..+.
T Consensus        68 ~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~  100 (129)
T d2fy8a1          68 VNLESDSETIHCILGIRKIDESVRIIAEAERYE  100 (129)
T ss_dssp             ECCSSHHHHHHHHHHHHHHCSSSCEEEECSSGG
T ss_pred             EeccchhhhHHHHHHHHHHCCCceEEEEEcCHH
Confidence            7554432   22444566788887777665553

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=1.5  Score=31.24  Aligned_cols=74  Identities=19%  Similarity=0.224  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ   88 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~   88 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++...+..          .++..+..|+.+..      ..-
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~~   74 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHh
Confidence            5889999997765 333343333 22679999999998776654432          45777888875321      123


Q ss_pred             CCccEEEecCCC
Q psy14962         89 APFDAIYLSTYV  100 (216)
Q Consensus        89 ~~~D~i~~~~~~  100 (216)
                      ++.|+++.+...
T Consensus        75 g~iDilVnnAg~   86 (244)
T d1pr9a_          75 GPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            679999887664

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=87.56  E-value=0.78  Score=30.59  Aligned_cols=87  Identities=14%  Similarity=0.000  Sum_probs=51.4

Q ss_pred             eEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|.-+|||. |.. -...... .++..++.+|.+++..+...+.+.           +.....|..... . ..+|+|+.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~-~~~~~~~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~ll-~-~~iD~V~I   68 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQ-WPDIELVLCTRNPKVLGTLATRYR-----------VSATCTDYRDVL-Q-YGVDAVMI   68 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTT-STTEEEEEECSCHHHHHHHHHHTT-----------CCCCCSSTTGGG-G-GCCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHh-CCCcEEEEEECCHHHHHHHHHhcc-----------cccccccHHHhc-c-cccceecc
Confidence            678899986 422 2222333 235577889999887665544321           111223443322 2 35899988


Q ss_pred             cCCCCchHHHHHhcCCCCeEEEE
Q psy14962         97 STYVPEIPYSILLQLKPGGRLVC  119 (216)
Q Consensus        97 ~~~~~~~~~~~~~~L~~gG~lv~  119 (216)
                      ..+...-.+.+...|+.|=-+++
T Consensus        69 ~tp~~~H~~~~~~al~~gk~V~~   91 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLGIPTFV   91 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEE
T ss_pred             ccccccccccccccccccccccc
Confidence            87776666777777787755554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.52  E-value=1.3  Score=31.93  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|-.|++.|. +..+++.+ ..+++|+.+|.+++.++.+.+.+...+      .++..+.+|+....         
T Consensus         7 kgK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEeccCCCHHHHHHHHHHH
Confidence            57788888876653 33333332 236799999999999888877776643      57888889975321         


Q ss_pred             CC--CCCccEEEecCCC
Q psy14962         86 LH--QAPFDAIYLSTYV  100 (216)
Q Consensus        86 ~~--~~~~D~i~~~~~~  100 (216)
                      ..  .+..|+++.+...
T Consensus        80 ~~~~~g~idilvnnAG~   96 (259)
T d1xq1a_          80 SSMFGGKLDILINNLGA   96 (259)
T ss_dssp             HHHHTTCCSEEEEECCC
T ss_pred             HHHhCCCcccccccccc
Confidence            01  2568999987764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=1  Score=32.32  Aligned_cols=74  Identities=12%  Similarity=0.013  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++...+.          ..++.++.+|+.+...        
T Consensus         5 ~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~----------~~~~~~~~~Dvs~~~~v~~~~~~~   73 (250)
T d1ydea1           5 AGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQE----------LPGAVFILCDVTQEDDVKTLVSET   73 (250)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----------cCCCeEEEccCCCHHHHHHHHHHH
Confidence            5888888887765 444444333 2367999999999877665543          2457888889753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        74 ~~~~g~iDilVnnAG~   89 (250)
T d1ydea1          74 IRRFGRLDCVVNNAGH   89 (250)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEecccc
Confidence              11678999887663

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.61  E-value=1.3  Score=32.16  Aligned_cols=80  Identities=13%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|--|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.+.+.   ...++..+.+|+.+...        
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV---PAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEEeeCCCHHHHHHHHHHH
Confidence            4778888887665 444444333 2357999999999998888887776431   12467889999763220        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+..|+++.+..
T Consensus        79 ~~~~G~iDilVnnAG   93 (274)
T d1xhla_          79 LAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCceEEEeecc
Confidence              1157899998755

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.09  E-value=0.94  Score=30.69  Aligned_cols=92  Identities=11%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             eEEEEcCCC-chHHHHHHHHhCCCcEEEEE-eCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEEEe
Q psy14962         19 KVLDIGSGS-GFMSCVFAELVGKTGRVFGV-EHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAIYL   96 (216)
Q Consensus        19 ~vldiG~G~-G~~~~~l~~~~~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~   96 (216)
                      +|.-+|||. |..-....+.. ++.+++++ |.+++..+...+   ..+.    +....+ ..|..... .....|+|+.
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~---~~~~----~~~~~~-~~~~~~ll-~~~~iD~v~I   72 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFAT---ANNY----PESTKI-HGSYESLL-EDPEIDALYV   72 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHH---HTTC----CTTCEE-ESSHHHHH-HCTTCCEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchh---cccc----ccceee-cCcHHHhh-hccccceeee
Confidence            678899986 54433334432 46688876 888875544332   2221    122222 23332211 2345899998


Q ss_pred             cCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         97 STYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        97 ~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      ..+...-.+.+..+|+.|=-+++.
T Consensus        73 ~tp~~~h~~~~~~~l~~g~~v~~E   96 (184)
T d1ydwa1          73 PLPTSLHVEWAIKAAEKGKHILLE   96 (184)
T ss_dssp             CCCGGGHHHHHHHHHTTTCEEEEC
T ss_pred             cccchhhcchhhhhhhccceeecc
Confidence            877766667778888887666553

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.08  E-value=1.3  Score=32.06  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.+.+.   ...++..+.+|+.....        
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV---SEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC---CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CCCceEEEEccCCCHHHHHHHHHHH
Confidence            4777888776654 444444333 1257999999999999988888766431   12467888999753210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+..|+++.+..
T Consensus        80 ~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCceEEEeCCc
Confidence              1157899987755

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.82  E-value=2  Score=31.27  Aligned_cols=79  Identities=11%  Similarity=0.067  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.++..++.+.+.+....     ..++.++..|+....         
T Consensus        24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-----g~~~~~~~~D~~~~~~v~~~~~~~   97 (294)
T d1w6ua_          24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMVQNTVSEL   97 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-----CCceEEEEecccChHHHHHHhhhh
Confidence            4677888887664 444444433 135799999999988877666554422     256788888875321         


Q ss_pred             -CCCCCccEEEecCCC
Q psy14962         86 -LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~  100 (216)
                       ...+..|+++.+...
T Consensus        98 ~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          98 IKVAGHPNIVINNAAG  113 (294)
T ss_dssp             HHHTCSCSEEEECCCC
T ss_pred             hhhccccchhhhhhhh
Confidence             113678999887664

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.79  E-value=2.2  Score=30.23  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC------CCC
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL------LHQ   88 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~   88 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++...+..          .++..+..|+.+..      ..-
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHHHHc
Confidence            5888898887665 444444333 23679999999987766554432          45777888875321      122


Q ss_pred             CCccEEEecCCC
Q psy14962         89 APFDAIYLSTYV  100 (216)
Q Consensus        89 ~~~D~i~~~~~~  100 (216)
                      ++.|+++.+...
T Consensus        73 g~iDilVnnAg~   84 (242)
T d1cyda_          73 GPVDLLVNNAAL   84 (242)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            679999987664

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.62  E-value=1.6  Score=31.43  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+.+|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+...+.   ...++.++.+|+.....        
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV---SEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CcCceEEEEccCCCHHHHHHHHHHH
Confidence            4667777776654 444444333 2367999999999999888887766431   12468889999753210        


Q ss_pred             --CCCCccEEEecCC
Q psy14962         87 --HQAPFDAIYLSTY   99 (216)
Q Consensus        87 --~~~~~D~i~~~~~   99 (216)
                        ..+..|+++.+..
T Consensus        80 ~~~~g~iDilvnnAG   94 (264)
T d1spxa_          80 LGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEeecccc
Confidence              1267899987754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=85.29  E-value=1.1  Score=31.50  Aligned_cols=93  Identities=11%  Similarity=0.028  Sum_probs=52.1

Q ss_pred             CeEEEEcCCC-ch-HHHHHHHHhCCCcEEEEE-eCCHHHHHHHHHHHHHhCCCCCCCCCeEE-EeccCCCCCCCCCCccE
Q psy14962         18 AKVLDIGSGS-GF-MSCVFAELVGKTGRVFGV-EHMREQCEDAWETVMRIRPDLLNDGRLHL-RCRDGRTGLLHQAPFDA   93 (216)
Q Consensus        18 ~~vldiG~G~-G~-~~~~l~~~~~~~~~v~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~D~   93 (216)
                      -+|--||||. |. ......+. .++.+++++ |.+++..+...+.+   +.     ....+ ...|.... .....+|+
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~-~~~~~ivav~d~~~~~a~~~~~~~---~i-----~~~~~~~~~d~~el-l~~~~iD~  103 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAG-CQHSRIEALVSGNAEKAKIVAAEY---GV-----DPRKIYDYSNFDKI-AKDPKIDA  103 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTT-CSSEEEEEEECSCHHHHHHHHHHT---TC-----CGGGEECSSSGGGG-GGCTTCCE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHh-CCCceEEEEecCCHHHHHHHHHhh---cc-----ccccccccCchhhh-ccccccee
Confidence            4688999975 21 11112222 135677765 99998766554432   21     22222 22333322 23456899


Q ss_pred             EEecCCCCchHHHHHhcCCCCeEEEEe
Q psy14962         94 IYLSTYVPEIPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        94 i~~~~~~~~~~~~~~~~L~~gG~lv~~  120 (216)
                      |+...+...-.+.+.+.|+.|=-+++.
T Consensus       104 V~I~tp~~~H~~~~~~al~~gk~v~~E  130 (221)
T d1h6da1         104 VYIILPNSLHAEFAIRAFKAGKHVMCE  130 (221)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred             eeeccchhhhhhHHHHhhhcchhhhcC
Confidence            988777666566777777777666553

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.10  E-value=0.76  Score=26.67  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=34.9

Q ss_pred             CCCCCeEEEEcCCC--chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q psy14962         14 IQEGAKVLDIGSGS--GFMSCVFAELVGKTGRVFGVEHMREQCEDAWE   59 (216)
Q Consensus        14 ~~~~~~vldiG~G~--G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~   59 (216)
                      .+++.+||-.|+..  |.+++.+++..  +.+|+++.-+++..+.+++
T Consensus        29 ~~~~~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~k~~~~~~   74 (77)
T d1o8ca2          29 RPQDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS   74 (77)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH
T ss_pred             ccCCCcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence            46788898887744  77888889886  4599999988888777765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=85.02  E-value=1.3  Score=31.79  Aligned_cols=75  Identities=17%  Similarity=0.120  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+   +      .++..+.+|+.+...        
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~------~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEI---G------PAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C------CceEEEEeeCCCHHHHHHHHHHH
Confidence            4777888887654 333444333 12679999999988776655543   2      568888899853221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        74 ~~~~g~iDilVnnAg~   89 (256)
T d1k2wa_          74 LDRWGSIDILVNNAAL   89 (256)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCccEEEeeccc
Confidence              11678999987774

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.89  E-value=0.91  Score=32.75  Aligned_cols=75  Identities=13%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+. .+++|+.+|.+++.++...+.+         ..++.++.+|+.....        
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------CCceEEEEcccCCHHHHHHHHHHH
Confidence            4788888888775 3333333321 2579999999998766554432         2468889999863210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..++.|+++.+...
T Consensus        74 ~~~~g~iDilVnnAg~   89 (254)
T d1hdca_          74 REEFGSVDGLVNNAGI   89 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCccEEEecCcc
Confidence              11578998877664

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.71  E-value=0.16  Score=37.07  Aligned_cols=51  Identities=14%  Similarity=-0.037  Sum_probs=35.9

Q ss_pred             eEEEeccCCCC--CCCCCCccEEEecCCCC-----------------chHHHHHhcCCCCeEEEEeecCC
Q psy14962         74 LHLRCRDGRTG--LLHQAPFDAIYLSTYVP-----------------EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        74 ~~~~~~d~~~~--~~~~~~~D~i~~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                      -.++.+|....  ..+++++|+|+.+.|..                 ..+.++.++|+|+|.+++.....
T Consensus         5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~   74 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ   74 (279)
T ss_dssp             EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             ceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcc
Confidence            34667776422  13467899999999852                 13468889999999999866443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.50  E-value=1.2  Score=32.06  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCC-HHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHM-REQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.++.+ ++.++.+.+.+....     ..++.++.+|+.+...       
T Consensus         3 ~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~   76 (260)
T d1x1ta1           3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-----GVKVLYDGADLSKGEAVRGLVDN   76 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-----TSCEEEECCCTTSHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHHHH
Confidence            4777777676654 344444333 125799999986 566666665554322     2578888999863220       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        77 ~~~~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          77 AVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHhCCCcEEEeeccc
Confidence               11679999987764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.30  E-value=1.3  Score=31.57  Aligned_cols=73  Identities=18%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.           .+..++.+|+.+...        
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~~   71 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEA-----------VGAHPVVMDVADPASVERGFAEA   71 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----------cCCeEEEEecCCHHHHHHHHHHH
Confidence            4778888888765 444444433 2367999999999877665442           346778888753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+.+|+++.+...
T Consensus        72 ~~~~g~iDilVnnAG~   87 (242)
T d1ulsa_          72 LAHLGRLDGVVHYAGI   87 (242)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhcCCceEEEECCcc
Confidence              11578999877664

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.22  E-value=0.87  Score=32.78  Aligned_cols=75  Identities=13%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++...+.+.         .+..++..|+.....        
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~   74 (253)
T d1hxha_           5 QGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---------ERSMFVRHDVSSEADWTLVMAAV   74 (253)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEEECCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEeecCCHHHHHHHHHHH
Confidence            4777887776654 444444433 235799999999988776655432         467778888753211        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        75 ~~~~g~iDilVnnAG~   90 (253)
T d1hxha_          75 QRRLGTLNVLVNNAGI   90 (253)
T ss_dssp             HHHHCSCCEEEECCCC
T ss_pred             HHHhCCCCeEEecccc
Confidence              11678999987764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=2.2  Score=30.50  Aligned_cols=80  Identities=19%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|--|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+....    ...++.++.+|+.+...        
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF----EPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS----CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCCcEEEEEeecCCHHHHHHHHHHH
Confidence            4778888887654 444444433 236799999999998887776664421    13568888999863221        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        77 ~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          77 VDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcCeecccccc
Confidence              11679999988775

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=83.37  E-value=1.6  Score=31.46  Aligned_cols=78  Identities=15%  Similarity=0.157  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCH-HHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMR-EQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      .|+++|-.|++.| ++..+++.+. .+++|+.++.+. ..++...+.+...+      .++..+.+|+.+...       
T Consensus         6 ~gK~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g------~~~~~~~~Dvt~~~~v~~~~~~   78 (261)
T d1geea_           6 EGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG------GEAIAVKGDVTVESDVINLVQS   78 (261)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT------CEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHH
Confidence            4777777777665 4444444332 256999999774 45666666666543      567888889763210       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        79 ~~~~~G~iDiLVnnAG~   95 (261)
T d1geea_          79 AIKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCCEeecccee
Confidence               11578999987764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=83.17  E-value=0.69  Score=31.70  Aligned_cols=101  Identities=10%  Similarity=0.065  Sum_probs=56.0

Q ss_pred             CeEEEEcCCC-chH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCe----------EEEeccCCCCC
Q psy14962         18 AKVLDIGSGS-GFM-SCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRL----------HLRCRDGRTGL   85 (216)
Q Consensus        18 ~~vldiG~G~-G~~-~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~d~~~~~   85 (216)
                      .+|.-||+|+ |.- +..++..   +..|+..|.+++.++.+.++..............          .+....-..  
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~---G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   79 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASK---GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG--   79 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT---TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST--
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc--
Confidence            5788999987 432 2333333   5699999999999888776644211000000000          011111111  


Q ss_pred             CCCCCccEEEecCCCC-----chHHHHHhcCCCCeEEEEeecCC
Q psy14962         86 LHQAPFDAIYLSTYVP-----EIPYSILLQLKPGGRLVCGVGKS  124 (216)
Q Consensus        86 ~~~~~~D~i~~~~~~~-----~~~~~~~~~L~~gG~lv~~~~~~  124 (216)
                       .-...|+|+...+-.     .++.++-+.++++-++.-.+...
T Consensus        80 -~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l  122 (186)
T d1wdka3          80 -DFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI  122 (186)
T ss_dssp             -TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred             -cccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence             113468898855532     25577778888888876655443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.00  E-value=1.9  Score=28.36  Aligned_cols=89  Identities=13%  Similarity=-0.009  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCCCcc
Q psy14962         17 GAKVLDIGSGSGFMSCVFAELVG-KTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQAPFD   92 (216)
Q Consensus        17 ~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D   92 (216)
                      +++||-+|+|-  .+..+++.+. .+.+|+.+|.+.+..+...+.+          ........+......   .-...|
T Consensus         2 ~K~IliiGaG~--~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~   69 (182)
T d1e5qa1           2 TKSVLMLGSGF--VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----------QHSTPISLDVNDDAALDAEVAKHD   69 (182)
T ss_dssp             CCEEEEECCST--THHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC----------TTEEEEECCTTCHHHHHHHHTTSS
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc----------cccccccccccchhhhHhhhhccc
Confidence            56899998854  4444444332 2469999999998665544321          223333333221110   013467


Q ss_pred             EEEecCCCCchHHHHHhcCCCCeEE
Q psy14962         93 AIYLSTYVPEIPYSILLQLKPGGRL  117 (216)
Q Consensus        93 ~i~~~~~~~~~~~~~~~~L~~gG~l  117 (216)
                      .+++..+.......+...++.+..+
T Consensus        70 ~~i~~~~~~~~~~~~~~~~~~~~~~   94 (182)
T d1e5qa1          70 LVISLIPYTFHATVIKSAIRQKKHV   94 (182)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHTCEE
T ss_pred             eeEeeccchhhhHHHHHHHhhccce
Confidence            7777666554444444444444333

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.50  E-value=0.91  Score=31.10  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=26.9

Q ss_pred             eEEEEcCCCchHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q psy14962         19 KVLDIGSGSGFMSCVFAELVGKTGRVFGVEHMREQCEDAW   58 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~   58 (216)
                      +|.-+|  .|+.+..+|..+..+.+|+|+|++++.++..+
T Consensus         2 kI~ViG--lG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAG--SGYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEEC--CSHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEEC--CChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            466665  55666555555545679999999999887665

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=81.73  E-value=0.9  Score=30.01  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=25.8

Q ss_pred             CCCeEEEEcCCCchH-HHHHHHHhCCCcEEEEEeCCH
Q psy14962         16 EGAKVLDIGSGSGFM-SCVFAELVGKTGRVFGVEHMR   51 (216)
Q Consensus        16 ~~~~vldiG~G~G~~-~~~l~~~~~~~~~v~~~D~~~   51 (216)
                      .|++|+-||+|...+ ....+++.++..+|+.+|.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999999443 334445556667899998776

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.14  E-value=1.3  Score=30.14  Aligned_cols=81  Identities=17%  Similarity=0.200  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCCCCCCccEE
Q psy14962         16 EGAKVLDIGSGS-GFMSCVFAELVGKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLLHQAPFDAI   94 (216)
Q Consensus        16 ~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i   94 (216)
                      .|.+|.-+|.|. |.-...+++.++  .+|++.|.++..                  ....+ ..+....   -...|+|
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g--~~v~~~d~~~~~------------------~~~~~-~~~l~el---l~~sDiv   96 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTPKE------------------GPWRF-TNSLEEA---LREARAA   96 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSCCC------------------SSSCC-BSCSHHH---HTTCSEE
T ss_pred             cCceEEEeccccccccceeeeeccc--cccccccccccc------------------cceee-eechhhh---hhccchh
Confidence            478899999988 666666666654  599999976420                  00100 1111111   1347999


Q ss_pred             EecCCCCc-----hHHHHHhcCCCCeEEEEe
Q psy14962         95 YLSTYVPE-----IPYSILLQLKPGGRLVCG  120 (216)
Q Consensus        95 ~~~~~~~~-----~~~~~~~~L~~gG~lv~~  120 (216)
                      ++..++..     +-....+.+|+|.+|+-.
T Consensus        97 ~~~~pl~~~t~~li~~~~l~~mk~~ailIN~  127 (181)
T d1qp8a1          97 VCALPLNKHTRGLVKYQHLALMAEDAVFVNV  127 (181)
T ss_dssp             EECCCCSTTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred             hcccccccccccccccceeeeccccceEEec
Confidence            98887642     237888899999988775

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.97  E-value=7.1  Score=28.40  Aligned_cols=84  Identities=11%  Similarity=0.021  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         15 QEGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        15 ~~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      -.|+++|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+...... ....++..+.+|+.+...       
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-ccCceEEEEeccCCCHHHHHHHHHH
Confidence            36788888887665 444444333 23679999999999888777766542210 113568888899763221       


Q ss_pred             ---CCCCccEEEecCCC
Q psy14962         87 ---HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 ---~~~~~D~i~~~~~~  100 (216)
                         ..+..|+++.+...
T Consensus        88 ~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCeEEEEeeccc
Confidence               12678999987664

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.66  E-value=3.1  Score=29.55  Aligned_cols=75  Identities=11%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|--|++.| ++..+++.+ ..+++|+.+|.+++.++...+.+.         .++.++.+|+.+...        
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------CcceEEEeecCCHHHHHHHHHHH
Confidence            5778888887765 344443332 125799999999987766655432         467788889753210        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        75 ~~~~g~idilinnAG~   90 (244)
T d1nffa_          75 VTAFGGLHVLVNNAGI   90 (244)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence              11578999887664

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.66  E-value=3.9  Score=29.28  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC--------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL--------   86 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------   86 (216)
                      .|+++|-.|++.| ++..+++.+ ..+++|+.++.+++.++.+.+......     ...+.+...|......        
T Consensus        13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~   86 (269)
T d1xu9a_          13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-----AASAHYIAGTMEDMTFAEQFVAQA   86 (269)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-----cccchhhhhhhhhHHHHHHHHHHH
Confidence            5788988888776 333333332 125799999999999988777655432     2456677777542110        


Q ss_pred             --CCCCccEEEecCCC
Q psy14962         87 --HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 --~~~~~D~i~~~~~~  100 (216)
                        ..+..|+++.+...
T Consensus        87 ~~~~g~~~~li~nag~  102 (269)
T d1xu9a_          87 GKLMGGLDMLILNHIT  102 (269)
T ss_dssp             HHHHTSCSEEEECCCC
T ss_pred             HHHhCCcccccccccc
Confidence              12567888776653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.64  E-value=2  Score=30.43  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC-------
Q psy14962         18 AKVLDIGSGSGFMSCVFAELV----GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL-------   86 (216)
Q Consensus        18 ~~vldiG~G~G~~~~~l~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   86 (216)
                      ++||--|++.| ++..+++.+    ..+..|+.++.+++.++.+++....       ..++.++..|+.+...       
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~~~   74 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-------HSNIHILEIDLRNFDAYDKLVAD   74 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-------CTTEEEEECCTTCGGGHHHHHHH
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-------CCcEEEEEEEeccHHHHHHHHhh
Confidence            57887776654 666666544    2456999999888877766554443       2678999999863221       


Q ss_pred             -----CCCCccEEEecCCC
Q psy14962         87 -----HQAPFDAIYLSTYV  100 (216)
Q Consensus        87 -----~~~~~D~i~~~~~~  100 (216)
                           ..+..|+++.+...
T Consensus        75 i~~~~~~~~iDiLvnNAg~   93 (248)
T d1snya_          75 IEGVTKDQGLNVLFNNAGI   93 (248)
T ss_dssp             HHHHHGGGCCSEEEECCCC
T ss_pred             hHHHhhcCCcceEEeeccc
Confidence                 12568999987664

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.63  E-value=7  Score=27.58  Aligned_cols=61  Identities=15%  Similarity=0.045  Sum_probs=41.0

Q ss_pred             eEEEEcCCCchHHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCC
Q psy14962         19 KVLDIGSGSGFMSCVFAELV----GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRT   83 (216)
Q Consensus        19 ~vldiG~G~G~~~~~l~~~~----~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (216)
                      +|.-|-.|+..++..+++.+    ..+++|+.++.+++.++.+.+.+...+.    ..++.++.+|+..
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP----DLKVVLAAADLGT   71 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT----TSEEEEEECCTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcC----CceEEEEEccCCC
Confidence            45555444545566665544    2467999999999999888777765431    2467888899753

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=80.60  E-value=8.7  Score=28.16  Aligned_cols=81  Identities=15%  Similarity=0.055  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCCC---CCC
Q psy14962         14 IQEGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGLL---HQA   89 (216)
Q Consensus        14 ~~~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~   89 (216)
                      +++|++||-.|+ +|.++..+++.+ ..+.+|+++..+........+.......    .....++.+|......   .-.
T Consensus         8 ~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~   82 (342)
T d1y1pa1           8 LPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP----GRFETAVVEDMLKQGAYDEVIK   82 (342)
T ss_dssp             SCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST----TTEEEEECSCTTSTTTTTTTTT
T ss_pred             CCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhcccc----ccccEEEeccccchhhhhhhcc
Confidence            567899998885 588888887654 2256999987777665554444333221    2334556677653221   113


Q ss_pred             CccEEEecCC
Q psy14962         90 PFDAIYLSTY   99 (216)
Q Consensus        90 ~~D~i~~~~~   99 (216)
                      ..|.|+....
T Consensus        83 ~~~~v~~~a~   92 (342)
T d1y1pa1          83 GAAGVAHIAS   92 (342)
T ss_dssp             TCSEEEECCC
T ss_pred             cchhhhhhcc
Confidence            4677765444

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.24  E-value=2.2  Score=30.56  Aligned_cols=79  Identities=11%  Similarity=0.034  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHhCCCCCCCCCeEEEeccCCCCC---------
Q psy14962         16 EGAKVLDIGSGSGFMSCVFAELV-GKTGRVFGVEHMREQCEDAWETVMRIRPDLLNDGRLHLRCRDGRTGL---------   85 (216)
Q Consensus        16 ~~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------   85 (216)
                      .|+++|-.|++. .++..+++.+ ..+++|+.+|.+++.++.+.+.+.+..     ..++.++.+|+....         
T Consensus         8 ~gK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   81 (260)
T d1h5qa_           8 VNKTIIVTGGNR-GIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQQI   81 (260)
T ss_dssp             TTEEEEEETTTS-HHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            477788888655 4444444433 236799999999877766555543321     257888899975322         


Q ss_pred             -CCCCCccEEEecCCC
Q psy14962         86 -LHQAPFDAIYLSTYV  100 (216)
Q Consensus        86 -~~~~~~D~i~~~~~~  100 (216)
                       ...+..|+++.+...
T Consensus        82 ~~~~g~iDilVnnAg~   97 (260)
T d1h5qa_          82 DADLGPISGLIANAGV   97 (260)
T ss_dssp             HHHSCSEEEEEECCCC
T ss_pred             HHHhCCCcEecccccc
Confidence             112679999887664