Psyllid ID: psy14971
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 156 | 2.2.26 [Sep-21-2011] | |||||||
| Q5F3N1 | 228 | Protein-L-isoaspartate(D- | yes | N/A | 0.660 | 0.451 | 0.388 | 5e-10 | |
| P22061 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.660 | 0.453 | 0.370 | 1e-09 | |
| Q4R5H0 | 227 | Protein-L-isoaspartate(D- | N/A | N/A | 0.660 | 0.453 | 0.370 | 2e-09 | |
| Q5RA89 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.660 | 0.453 | 0.370 | 2e-09 | |
| P23506 | 227 | Protein-L-isoaspartate(D- | no | N/A | 0.403 | 0.277 | 0.5 | 2e-09 | |
| P80895 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.403 | 0.277 | 0.5 | 2e-09 | |
| Q92047 | 228 | Protein-L-isoaspartate(D- | no | N/A | 0.403 | 0.276 | 0.5 | 3e-09 | |
| Q42539 | 230 | Protein-L-isoaspartate O- | no | N/A | 0.403 | 0.273 | 0.469 | 3e-09 | |
| P22062 | 227 | Protein-L-isoaspartate(D- | yes | N/A | 0.403 | 0.277 | 0.5 | 3e-09 | |
| Q43209 | 230 | Protein-L-isoaspartate O- | N/A | N/A | 0.391 | 0.265 | 0.453 | 6e-09 |
| >sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAEEGPYDI 65
+VG KG+ V+ ++H ++ + NN K + S + + V DG G+AEE PYD
Sbjct: 99 MVGPKGQ---VVGIDHIKELVDDSINNVKKDDPTLLSSGRVKLIVGDGRMGYAEEAPYDA 155
Query: 66 IHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGT 113
IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L +G+
Sbjct: 156 IHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKLEDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Gallus gallus (taxid: 9031) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7 |
| >sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAEEGPYDI 65
+VG G+ V+ ++H ++ + NN + + S + + V DG G+AEE PYD
Sbjct: 99 MVGCTGK---VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 155
Query: 66 IHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGT 113
IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L +G+
Sbjct: 156 IHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKLQDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAEEGPYDI 65
+VG G+ V+ ++H ++ + NN + + S + + V DG G+AEE PYD
Sbjct: 99 MVGCTGK---VIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 155
Query: 66 IHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGT 113
IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L +G+
Sbjct: 156 IHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKLQDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAEEGPYDI 65
+VG G+ V+ ++H ++ + NN + + S + + V DG G+AEE PYD
Sbjct: 99 MVGCTGK---VIGIDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 155
Query: 66 IHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGT 113
IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L +G+
Sbjct: 156 IHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKLQDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G EE PYD IH+GAA VP+ +L QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 EDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 48 VSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYID 107
V V DG +G AE PYD IH+GAA E+P+ ++ QLKPGGRLV G +Q L +D
Sbjct: 144 VHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVG---NIFQDLQVVD 200
Query: 108 RLPNGT 113
+ +G+
Sbjct: 201 KNSDGS 206
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G + PYD IH+GAA E+P+ +L QLKPGGR+V G ++ Q L ID+
Sbjct: 146 VSDGRLGWPDAAPYDAIHVGAAAPEIPRPLLEQLKPGGRMVIPVGTYS---QDLQVIDKS 202
Query: 110 PNGT 113
+G+
Sbjct: 203 ADGS 206
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 156 | ||||||
| 321473043 | 227 | hypothetical protein DAPPUDRAFT_47356 [D | 0.410 | 0.281 | 0.538 | 6e-10 | |
| 427781597 | 232 | Putative protein-l-isoaspartated-asparta | 0.730 | 0.491 | 0.367 | 1e-09 | |
| 241566262 | 277 | protein-L-isoaspartate(D-aspartate) O-me | 0.423 | 0.238 | 0.507 | 2e-09 | |
| 225710608 | 250 | Protein-L-isoaspartateD-aspartate O-meth | 0.429 | 0.268 | 0.5 | 3e-09 | |
| 41152134 | 228 | l-isoaspartyl protein carboxyl methyltra | 0.467 | 0.320 | 0.475 | 4e-09 | |
| 223648330 | 228 | Protein-L-isoaspartateD-aspartate O-meth | 0.660 | 0.451 | 0.398 | 6e-09 | |
| 168015445 | 218 | predicted protein [Physcomitrella patens | 0.403 | 0.288 | 0.5 | 7e-09 | |
| 260830152 | 230 | hypothetical protein BRAFLDRAFT_284774 [ | 0.391 | 0.265 | 0.467 | 1e-08 | |
| 307104665 | 237 | hypothetical protein CHLNCDRAFT_56300 [C | 0.493 | 0.324 | 0.423 | 1e-08 | |
| 410916985 | 269 | PREDICTED: protein-L-isoaspartate(D-aspa | 0.403 | 0.234 | 0.515 | 2e-08 |
| >gi|321473043|gb|EFX84011.1| hypothetical protein DAPPUDRAFT_47356 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG KG+ EEGP+D IH+GAA +P E++AQLKPGGRLV G G+ QSL ID+
Sbjct: 142 VGDGRKGYPEEGPFDAIHVGAAAPTLPYELMAQLKPGGRLVVPVGPEGGN-QSLEQIDKR 200
Query: 110 PNGTY 114
+G++
Sbjct: 201 KDGSF 205
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427781597|gb|JAA56250.1| Putative protein-l-isoaspartated-aspartate o-methyltransferase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 2 GDLNVIVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAE 59
G L +G+ GE L + ++H ++ +++ N + + Q KS + + V DG +G+ E
Sbjct: 90 GYLTACMGLMVGETGLAVGIDHIPELVNESIANIERDQPQLLKSKRVKMIVGDGREGYPE 149
Query: 60 EGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLR 116
PYD IH+GAA ++PK+++ QLKPGGRL+ G G Q+L +D+L +GT R
Sbjct: 150 HAPYDAIHVGAAAPDMPKKLVEQLKPGGRLICPVG-PAGASQTLEQVDKLEDGTVRR 205
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241566262|ref|XP_002402129.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis] gi|215499989|gb|EEC09483.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+ EE PYD IH+GAA E+PK+++ QLKPGGRL+ G G Q+L +D+L
Sbjct: 160 VGDGRVGYPEEAPYDAIHVGAAAPELPKQLIEQLKPGGRLICPVG-PAGQSQTLEQVDKL 218
Query: 110 PNGTYLR 116
+GT R
Sbjct: 219 QDGTVKR 225
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|225710608|gb|ACO11150.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Caligus rogercresseyi] | Back alignment and taxonomy information |
|---|
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG KG+A EGPY+ I++GAA +E+ +E++ QL PGGRLV G NG Q + ID+L
Sbjct: 163 VGDGRKGYASEGPYNAINVGAAAVELHQELVDQLAPGGRLVLPIGPSNGD-QHMEQIDKL 221
Query: 110 PNGTYLRE 117
+G+ RE
Sbjct: 222 ADGSIKRE 229
|
Source: Caligus rogercresseyi Species: Caligus rogercresseyi Genus: Caligus Family: Caligidae Order: Siphonostomatoida Class: Maxillopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|41152134|ref|NP_957062.1| l-isoaspartyl protein carboxyl methyltransferase, like [Danio rerio] gi|37589722|gb|AAH59599.1| L-isoaspartyl protein carboxyl methyltransferase, like [Danio rerio] | Back alignment and taxonomy information |
|---|
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G +E PYD IH+GAA +PK +L QLKPGGRLV G G Q L DR
Sbjct: 140 VGDGRFGFPDEAPYDAIHVGAAAPTLPKALLEQLKPGGRLVLPVGPEGGS-QVLEQYDRQ 198
Query: 110 PNGTYLREKSGYPIDKPLGGLI 131
+GT+LR KPL G++
Sbjct: 199 SDGTFLR--------KPLMGVV 212
|
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|223648330|gb|ACN10923.1| Protein-L-isoaspartateD-aspartate O-methyltransferase [Salmo salar] | Back alignment and taxonomy information |
|---|
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFK-NVSVKDGSKGHAEEGPYDI 65
+VG KG+ V+ ++H ++ + NN K + S + + V DG GH EE PYD
Sbjct: 99 MVGPKGK---VIGIDHIKELVDDSINNVKKDDPSLMSSGRVKLIVGDGRMGHPEEAPYDA 155
Query: 66 IHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGT 113
IH+GAA VP+ +L QLKPGGRL+ G G+ Q L D+L +G+
Sbjct: 156 IHVGAAAPNVPQALLDQLKPGGRLILPVGPAGGN-QMLEQYDKLADGS 202
|
Source: Salmo salar Species: Salmo salar Genus: Salmo Family: Salmonidae Order: Salmoniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|168015445|ref|XP_001760261.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688641|gb|EDQ75017.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 48 VSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYID 107
V V DG G+ E PYD IH+GAA E+P+ ++ QLKPGGR+V G N Q L ID
Sbjct: 141 VHVADGKLGNEEGAPYDCIHVGAAAPELPEALVQQLKPGGRMVIPLGTDN---QDLVIID 197
Query: 108 RLPNGT 113
+LP+G+
Sbjct: 198 KLPDGS 203
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|260830152|ref|XP_002610025.1| hypothetical protein BRAFLDRAFT_284774 [Branchiostoma floridae] gi|229295388|gb|EEN66035.1| hypothetical protein BRAFLDRAFT_284774 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN 111
DG +G E+ P+D IH+GAA ++P+ ++ QLKPGGRL+ G G+ Q+L +D+LP+
Sbjct: 142 DGREGSPEDAPFDAIHVGAAAPQIPQALIDQLKPGGRLILPVGPAGGN-QNLEQVDKLPD 200
Query: 112 GT 113
GT
Sbjct: 201 GT 202
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|307104665|gb|EFN52918.1| hypothetical protein CHLNCDRAFT_56300 [Chlorella variabilis] | Back alignment and taxonomy information |
|---|
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 42 RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQ 101
R+ + V DG KG+ E PYD IH+GAA +P+E++ QL PGGR+V G G Q
Sbjct: 139 RQGHLALVVGDGRKGYPAEAPYDAIHVGAAAPRLPQELVEQLAPGGRMVVPVGPEGG-MQ 197
Query: 102 SLAYIDRLPNGTYLREKS 119
SLA +D+ +G+ R +
Sbjct: 198 SLAVVDKGADGSVRRRNA 215
|
Source: Chlorella variabilis Species: Chlorella variabilis Genus: Chlorella Family: Chlorellaceae Order: Chlorellales Class: Trebouxiophyceae Phylum: Chlorophyta Superkingdom: Eukaryota |
| >gi|410916985|ref|XP_003971967.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Takifugu rubripes] | Back alignment and taxonomy information |
|---|
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG GH EE PYD IH+GAA VP+ +L QLKPGGRL+ G G+ Q L D+L
Sbjct: 182 VGDGRMGHGEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGN-QMLEQYDKL 240
Query: 110 PNGT 113
+G+
Sbjct: 241 EDGS 244
|
Source: Takifugu rubripes Species: Takifugu rubripes Genus: Takifugu Family: Tetraodontidae Order: Tetraodontiformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 156 | ||||||
| ZFIN|ZDB-GENE-040426-1738 | 249 | pcmtl "l-isoaspartyl protein c | 0.429 | 0.269 | 0.514 | 1.4e-11 | |
| UNIPROTKB|F1NJV4 | 197 | PCMT1 "Protein-L-isoaspartate | 0.403 | 0.319 | 0.5 | 5.8e-11 | |
| UNIPROTKB|Q5F3N1 | 228 | PCMT1 "Protein-L-isoaspartate( | 0.403 | 0.276 | 0.5 | 5.8e-11 | |
| UNIPROTKB|B7Z972 | 192 | PCMT1 "Protein-L-isoaspartate | 0.403 | 0.328 | 0.5 | 5.8e-11 | |
| UNIPROTKB|P22061 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.403 | 0.277 | 0.5 | 5.8e-11 | |
| UNIPROTKB|J9JIK8 | 208 | PCMT1 "Protein-L-isoaspartate | 0.403 | 0.302 | 0.5 | 5.8e-11 | |
| UNIPROTKB|P80895 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.403 | 0.277 | 0.5 | 5.8e-11 | |
| MGI|MGI:97502 | 227 | Pcmt1 "protein-L-isoaspartate | 0.403 | 0.277 | 0.5 | 5.8e-11 | |
| RGD|3268 | 227 | Pcmt1 "protein-L-isoaspartate | 0.403 | 0.277 | 0.5 | 1.2e-10 | |
| UNIPROTKB|P22062 | 227 | Pcmt1 "Protein-L-isoaspartate( | 0.403 | 0.277 | 0.5 | 1.2e-10 |
| ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 35/68 (51%), Positives = 42/68 (61%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G +E PYD IH+GAA +PK +L QLKPGGRLV G G Q L DR
Sbjct: 161 VGDGRFGFPDEAPYDAIHVGAAAPTLPKALLEQLKPGGRLVLPVGPEGGS-QVLEQYDRQ 219
Query: 110 PNGTYLRE 117
+GT+LR+
Sbjct: 220 SDGTFLRK 227
|
|
| UNIPROTKB|F1NJV4 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 109 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 167
Query: 110 PNGT 113
+G+
Sbjct: 168 EDGS 171
|
|
| UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 EDGS 202
|
|
| UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 105 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 163
Query: 110 PNGT 113
+G+
Sbjct: 164 QDGS 167
|
|
| UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
|
| UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 121 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 179
Query: 110 PNGT 113
+G+
Sbjct: 180 QDGS 183
|
|
| UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
|
| MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
|
| RGD|3268 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
|
| UNIPROTKB|P22062 Pcmt1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 50 VKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRL 109
V DG G AEE PYD IH+GAA VP+ ++ QLKPGGRL+ G G+ Q L D+L
Sbjct: 140 VGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN-QMLEQYDKL 198
Query: 110 PNGT 113
+G+
Sbjct: 199 QDGS 202
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.1.1.77 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 156 | |||
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 8e-16 | |
| PRK00312 | 212 | PRK00312, pcm, protein-L-isoaspartate O-methyltran | 8e-13 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 4e-12 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 7e-09 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 4e-08 | |
| TIGR04364 | 394 | TIGR04364, methyltran_FxLD, methyltransferase, FxL | 2e-07 | |
| TIGR04188 | 363 | TIGR04188, methyltr_grsp, methyltransferase, ATP-g | 1e-05 | |
| PRK13943 | 322 | PRK13943, PRK13943, protein-L-isoaspartate O-methy | 2e-05 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 6e-04 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-16
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
++NV+V+ DGSKG EE PYD I + AA EVP+ +L QLKPGGRLV G Q
Sbjct: 119 YENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGP--AQR 176
Query: 103 LAYIDRLPNGTYLRE 117
L I + +G + R
Sbjct: 177 LLRITKDGDGNFERR 191
|
Length = 209 |
| >gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 8e-13
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 31 QNNKKLNIKQNRKSFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGR 88
+ K+L + NVSV+ DG KG P+D I + AA E+P+ +L QLK GG
Sbjct: 118 RRLKQLGLH-------NVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGI 170
Query: 89 LV 90
LV
Sbjct: 171 LV 172
|
Length = 212 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-12
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 35 KLNIKQNRKSFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92
+ N++ + +NV V DG +G E PYD IH+GAA E+P+ ++ QLK GGRLV
Sbjct: 115 RRNLE--KLGLENVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIP 172
Query: 93 KGLHNGHYQSLAYIDRLPNG 112
G NG+ Q L D+ +G
Sbjct: 173 VGP-NGN-QVLQQFDKRNDG 190
|
Length = 210 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 45 FKNVSV--KDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+ NV V DG+ G+ E PYD I++ AA ++PK ++ QLK GG +V G ++ Q
Sbjct: 126 YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYS---QE 182
Query: 103 LAYIDRLPNGTYLREKSGYPIDKPLGG 129
L +++ NG +++K G PL G
Sbjct: 183 LIRVEKD-NGKIIKKKLGEVAFVPLIG 208
|
Length = 212 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-08
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 47 NVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
NV V DG++G PYD I++ AA ++P+ ++ QLK GG LV
Sbjct: 129 NVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILV 174
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 47 NVSV--KDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
V+V D G E PYD I + ++P L QL PGGRLV
Sbjct: 133 QVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLV 178
|
Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394 |
| >gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 48 VSVKDGSKGHAEEGPYD-IIHLGAAC--IEVPKEILAQLKPGGRLV 90
V DG GH PYD II A C VP L Q +PGG ++
Sbjct: 160 VVTGDGLLGHPPRAPYDRII---ATCAVRRVPPAWLRQTRPGGVIL 202
|
Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363 |
| >gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 6 VIVGIKGERALVLILNHYMKV-KSKNQNNKKLNIKQNRKSFKNVSV--KDGSKGHAEEGP 62
V+ + GE+ LV+ + + K+ + +N ++L I+ NV DG G E P
Sbjct: 97 VMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-------NVIFVCGDGYYGVPEFAP 149
Query: 63 YDIIHLGAACIEVPKEILAQLKPGGRLV 90
YD+I + EVP+ QLK GGR++
Sbjct: 150 YDVIFVTVGVDEVPETWFTQLKEGGRVI 177
|
Length = 322 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 6e-04
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDR 108
DG +G + P+D I + AA +P ++ QLK GG LV + G Q L + +
Sbjct: 132 DGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVI--PVEEGVGQVLYKVVK 186
|
Length = 205 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 156 | |||
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.95 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.94 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.88 | |
| KOG1661|consensus | 237 | 99.87 | ||
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.85 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.84 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.77 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.71 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.62 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.48 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.44 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.43 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.41 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.38 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.34 | |
| PLN02476 | 278 | O-methyltransferase | 99.33 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.32 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.31 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.31 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.28 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.28 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.28 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.2 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.19 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.18 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.16 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.16 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.15 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.14 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.12 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.09 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.08 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.04 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.04 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.02 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.01 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.97 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.94 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.94 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.94 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.93 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.91 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.91 | |
| KOG1663|consensus | 237 | 98.91 | ||
| KOG1540|consensus | 296 | 98.89 | ||
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.86 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.85 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.85 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.85 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.84 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.82 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.82 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.81 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.81 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.81 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.81 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.8 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.79 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.79 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.76 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.75 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.74 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.74 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.74 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.73 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.72 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.71 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.7 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.7 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.69 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.68 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.68 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.67 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.67 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.66 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.66 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.65 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.64 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.63 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.63 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.62 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.62 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.62 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.61 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.6 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.59 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.59 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.59 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.59 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.58 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.58 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.57 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.54 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.51 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.51 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.5 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.5 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.5 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.5 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.49 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.49 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.49 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.48 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.47 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.47 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.46 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.45 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.45 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.45 | |
| PLN02366 | 308 | spermidine synthase | 98.41 | |
| KOG1122|consensus | 460 | 98.41 | ||
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.41 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.4 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.4 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.39 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.36 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.35 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.35 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.34 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.3 | |
| KOG2915|consensus | 314 | 98.29 | ||
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.28 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.28 | |
| PLN02823 | 336 | spermine synthase | 98.28 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.24 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.23 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.21 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.2 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.18 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.16 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.15 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.14 | |
| KOG4300|consensus | 252 | 98.13 | ||
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.12 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.09 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.08 | |
| KOG1270|consensus | 282 | 98.08 | ||
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.07 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.06 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.06 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.05 | |
| KOG2899|consensus | 288 | 98.04 | ||
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.03 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.02 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.99 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.99 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.97 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.96 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.96 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.96 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.96 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.95 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.94 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.92 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.91 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.87 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.87 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.86 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.86 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.86 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.83 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.83 | |
| KOG1271|consensus | 227 | 97.82 | ||
| PRK05785 | 226 | hypothetical protein; Provisional | 97.8 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.76 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.75 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 97.74 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.73 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.73 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.71 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.7 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.68 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.66 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.61 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.6 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.53 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.52 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.52 | |
| KOG2904|consensus | 328 | 97.51 | ||
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.48 | |
| KOG3420|consensus | 185 | 97.42 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.4 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.37 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.34 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.31 | |
| KOG1499|consensus | 346 | 97.28 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.27 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.25 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.25 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.22 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.15 | |
| KOG2730|consensus | 263 | 97.11 | ||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.09 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.09 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.05 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.05 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.0 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.98 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.98 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.93 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.91 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 96.88 | |
| KOG1500|consensus | 517 | 96.87 | ||
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.84 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.79 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.79 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.77 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.76 | |
| KOG1541|consensus | 270 | 96.66 | ||
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.56 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.43 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 96.32 | |
| KOG1596|consensus | 317 | 96.31 | ||
| KOG1975|consensus | 389 | 96.15 | ||
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.07 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 96.04 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.04 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 96.02 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.99 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 95.94 | |
| KOG2361|consensus | 264 | 95.86 | ||
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 95.81 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.79 | |
| KOG1709|consensus | 271 | 95.78 | ||
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 95.77 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.75 | |
| KOG2198|consensus | 375 | 95.7 | ||
| KOG1562|consensus | 337 | 95.6 | ||
| PRK04148 | 134 | hypothetical protein; Provisional | 95.48 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.07 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.06 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.05 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.05 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.0 | |
| KOG3010|consensus | 261 | 94.94 | ||
| KOG2187|consensus | 534 | 94.7 | ||
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.64 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 94.64 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 94.58 | |
| KOG2671|consensus | 421 | 94.56 | ||
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.4 | |
| KOG0820|consensus | 315 | 94.38 | ||
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 94.36 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.34 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 94.3 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.18 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.11 | |
| KOG3191|consensus | 209 | 94.08 | ||
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.07 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 93.98 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.29 | |
| KOG1253|consensus | 525 | 93.06 | ||
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 92.94 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 92.51 | |
| KOG3178|consensus | 342 | 92.33 | ||
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 92.24 | |
| KOG0024|consensus | 354 | 91.97 | ||
| KOG1269|consensus | 364 | 91.95 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.91 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 91.2 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.59 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 90.56 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.55 | |
| KOG0023|consensus | 360 | 90.41 | ||
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 90.27 | |
| KOG2352|consensus | 482 | 89.77 | ||
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.65 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 89.51 | |
| PHA01634 | 156 | hypothetical protein | 88.78 | |
| KOG1501|consensus | 636 | 88.61 | ||
| KOG1227|consensus | 351 | 87.63 | ||
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 87.4 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 87.02 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 86.71 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 86.31 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.07 | |
| KOG2352|consensus | 482 | 85.44 | ||
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 85.25 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.59 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 84.47 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 84.19 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 83.51 | |
| PRK13699 | 227 | putative methylase; Provisional | 83.37 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 81.96 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 81.58 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 81.58 | |
| KOG3115|consensus | 249 | 81.15 | ||
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 81.1 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 80.83 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 80.69 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 80.04 |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=180.65 Aligned_cols=124 Identities=33% Similarity=0.411 Sum_probs=113.9
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+||.| +||++++ +|+++|+++++++.|++|++. +|+.| |.+++||+..+|++.+|||+|+++++.+++|+.|
T Consensus 83 sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~-lg~~n---V~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~L 155 (209)
T COG2518 83 SGYQAAVLARLVG---RVVSIERIEELAEQARRNLET-LGYEN---VTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEAL 155 (209)
T ss_pred chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHH-cCCCc---eEEEECCcccCCCCCCCcCEEEEeeccCCCCHHH
Confidence 47777 5688874 999999999999999999999 69999 9999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISL 133 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~ 133 (156)
.+|||+|||||+|++..+ .|.+..++|.+++.+..+.+++++|+||.+...|
T Consensus 156 l~QL~~gGrlv~PvG~~~--~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~~~ 207 (209)
T COG2518 156 LDQLKPGGRLVIPVGSGP--AQRLLRITKDGDGNFERRDLFNVRFVPLVGGDGF 207 (209)
T ss_pred HHhcccCCEEEEEEccCC--cEEEEEEEEcCCCcEEEeeeccceeeecCCcccc
Confidence 999999999999999544 5999999998788899999999999999986554
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=176.65 Aligned_cols=125 Identities=32% Similarity=0.410 Sum_probs=107.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.||+|. +|+++++.++|+++|+++++++.|++|++. ++..| |++++||+..++++.+|||+|+++++++++|..|
T Consensus 83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~n---v~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l 158 (209)
T PF01135_consen 83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDN---VEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEAL 158 (209)
T ss_dssp TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHS---EEEEES-GGGTTGGG-SEEEEEESSBBSS--HHH
T ss_pred CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCc---eeEEEcchhhccccCCCcCEEEEeeccchHHHHH
Confidence 488885 688899999999999999999999999999 58889 9999999999999889999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLI 131 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~ 131 (156)
.+||++|||||+|++. +. .|.+..++|.+++.++.+.++.|+|+||.+..
T Consensus 159 ~~qL~~gGrLV~pi~~-~~-~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 159 LEQLKPGGRLVAPIGQ-GG-SQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp HHTEEEEEEEEEEESS-SS-SEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHhcCCCcEEEEEEcc-CC-ceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 9999999999999997 43 69999999997789999999999999998753
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=148.65 Aligned_cols=125 Identities=29% Similarity=0.400 Sum_probs=111.2
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+|+++. +++++++.++|+++|+++++++.|++|++. .+.+| ++++.+|+.++++..++||+|+++++.+++|+.+
T Consensus 87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~-~g~~~---v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~l 162 (212)
T PRK13942 87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-LGYDN---VEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPL 162 (212)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC---eEEEECCcccCCCcCCCcCEEEECCCcccchHHH
Confidence 478885 577778889999999999999999999998 58888 9999999988777778999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISL 133 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~ 133 (156)
.++|||||+|+++.++. .+.+..++|. ++.++.+.++.++|+||.+..++
T Consensus 163 ~~~LkpgG~lvi~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~ 212 (212)
T PRK13942 163 IEQLKDGGIMVIPVGSY---SQELIRVEKD-NGKIIKKKLGEVAFVPLIGKNGF 212 (212)
T ss_pred HHhhCCCcEEEEEEcCC---CcEEEEEEEE-CCEEEEEEeccEEEEecccCCCC
Confidence 99999999999999864 4788889997 46799999999999999987653
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=147.52 Aligned_cols=133 Identities=33% Similarity=0.444 Sum_probs=115.1
Q ss_pred CchHHH-HHHhcCCCCEE-EEEeCCHHHHHHHHHHHhhhcC---------CCCccceEEEEccCCCCCCCCCCcCEEEEc
Q psy14971 1 MGDLNV-IVGIKGERALV-LILNHYMKVKSKNQNNKKLNIK---------QNRKSFKNVSVKDGSKGHAEEGPYDIIHLG 69 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V-~avD~~~~~~~~A~~~l~~~~g---------~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~ 69 (156)
+|||+. ++.++++.|.+ ++||..+++++.+++|++.+.. ..+ +.++.||+..++++..+||+|+++
T Consensus 93 SGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~---l~ivvGDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 93 SGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE---LSIVVGDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred ccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc---eEEEeCCccccCCccCCcceEEEc
Confidence 589985 56688887765 9999999999999999987421 124 899999999999999999999999
Q ss_pred cCCCchHHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 70 AACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 70 ~~~~~i~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
++.+++|+.++++|++||+|++|.+.... .|.+.++.|..++.+..+.+|.+.++|+.+..+ |.++|
T Consensus 170 Aaa~~~pq~l~dqL~~gGrllip~~~~~~-~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~---q~~~~ 236 (237)
T KOG1661|consen 170 AAASELPQELLDQLKPGGRLLIPVGQDGG-TQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRES---QPSRF 236 (237)
T ss_pred cCccccHHHHHHhhccCCeEEEeecccCc-eeEEEeecccccCceeeeEeeceEEEecccccc---ccCCC
Confidence 99999999999999999999999997555 688889999888999999999999999997655 44444
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=140.05 Aligned_cols=122 Identities=22% Similarity=0.214 Sum_probs=105.7
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++ ++++++++.++|+++|+++++++.|++|+++ .++.++ ++++.+|+.++++..++||+|+++++..++|+.+
T Consensus 83 sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~-~~~~~~--v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l 159 (205)
T PRK13944 83 SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGYWGV--VEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSAL 159 (205)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCc--EEEEECCcccCCccCCCccEEEEccCcchhhHHH
Confidence 37777 4677887778999999999999999999998 476533 9999999988776667999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLG 128 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~ 128 (156)
.++|+|||+|++++.... .|.+..++|. ++.++.+.++.|+|+||.
T Consensus 160 ~~~L~~gG~lvi~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 160 VRQLKDGGVLVIPVEEGV--GQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred HHhcCcCcEEEEEEcCCC--ceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 999999999999997654 4788889996 457999999999999984
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=138.58 Aligned_cols=124 Identities=26% Similarity=0.332 Sum_probs=109.2
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++. ++++.++.++|+++|+++++++.|++|+++ .+++| ++++.+|+.+.++...+||+|+++++.+.+++.+
T Consensus 88 sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~-~g~~~---v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~ 163 (215)
T TIGR00080 88 SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK-LGLDN---VIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEAL 163 (215)
T ss_pred ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCC---eEEEECCcccCCcccCCCCEEEEcCCcccccHHH
Confidence 377775 577777778999999999999999999999 58888 9999999988766667899999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLIS 132 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~ 132 (156)
.++|+|||+|+++++. . .+.+..++|. ++.+..+.++.+.|+||.+...
T Consensus 164 ~~~L~~gG~lv~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~ 212 (215)
T TIGR00080 164 IDQLKEGGILVMPVGE-Y--LQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEG 212 (215)
T ss_pred HHhcCcCcEEEEEEcC-C--ceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCcc
Confidence 9999999999999986 3 5888888886 5679999999999999987654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=126.29 Aligned_cols=121 Identities=26% Similarity=0.272 Sum_probs=103.8
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++.+ +.+. ++|+++|+++++++.|++++++ .++.| ++++.+|+.+.++..++||+|++++++..+++.+
T Consensus 89 sG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l 161 (212)
T PRK00312 89 SGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ-LGLHN---VSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRAL 161 (212)
T ss_pred ccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH-CCCCc---eEEEECCcccCCCcCCCcCEEEEccCchhhhHHH
Confidence 3777764 4443 5899999999999999999998 58888 9999999987776667899999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLI 131 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~ 131 (156)
.++|+|||+|+++.+. ++ .+.+..++|. ++.+..+.+++++|+|+.++.
T Consensus 162 ~~~L~~gG~lv~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~ 210 (212)
T PRK00312 162 LEQLKEGGILVAPVGG-EE-QQLLTRVRKR-GGRFEREVLEEVRFVPLVKGE 210 (212)
T ss_pred HHhcCCCcEEEEEEcC-CC-ceEEEEEEEc-CCeEEEEEEccEEEEecCCCC
Confidence 9999999999999983 33 4778888885 567999999999999998754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=125.01 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=109.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
+|.+++-+.+++|.++|+|+|.+++.++..++|+++ +|++| ++++.||+.+.+++...||+||++++.. .+.+.
T Consensus 45 tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~-fg~~n---~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~ 120 (187)
T COG2242 45 TGSITIEWALAGPSGRVIAIERDEEALELIERNAAR-FGVDN---LEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEA 120 (187)
T ss_pred ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH-hCCCc---EEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHH
Confidence 478888777999999999999999999999999999 69999 9999999998777656799999999832 45678
Q ss_pred HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 79 ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
+++.||||||||+...+.++ ...+....+..++. +...+.-.+..++.++..|...++.+
T Consensus 121 ~~~~l~~ggrlV~naitlE~-~~~a~~~~~~~g~~-ei~~v~is~~~~lg~~~~~~~~nPv~ 180 (187)
T COG2242 121 AWERLKPGGRLVANAITLET-LAKALEALEQLGGR-EIVQVQISRGKPLGGGTMFRPVNPVF 180 (187)
T ss_pred HHHHcCcCCeEEEEeecHHH-HHHHHHHHHHcCCc-eEEEEEeecceeccCeeEeecCCCEE
Confidence 89999999999999887654 33333222332443 77777888888999999988888763
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=117.92 Aligned_cols=126 Identities=22% Similarity=0.269 Sum_probs=103.7
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|++++ +++..+..+.|+++|+++++++.|+++++. .|.+| ++++.+|+.+..++.++||+|+++.+.+++|+.+
T Consensus 91 tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-~g~~n---V~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~ 166 (322)
T PRK13943 91 TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR-LGIEN---VIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETW 166 (322)
T ss_pred ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-cCCCc---EEEEeCChhhcccccCCccEEEECCchHHhHHHH
Confidence 377775 566666667999999999999999999998 58888 9999999887766667899999999999999999
Q ss_pred HhhCCCCcEEEEEeccC-CCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLH-NGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLIS 132 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~ 132 (156)
.++|+|||+++++.... .. .+.....+|. ++.++...+++++|++..|..+
T Consensus 167 ~~~LkpgG~Lvv~~~~~l~~-~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg 218 (322)
T PRK13943 167 FTQLKEGGRVIVPINLKLSR-RQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLG 218 (322)
T ss_pred HHhcCCCCEEEEEeCCccCC-CCceEEEEec-CCCceEEEEEEeeEEcccchHH
Confidence 99999999999988643 12 3556667776 4568999999999998866433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=111.08 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=97.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
+|.||+ ||..+++.|+|+++|++++.++.|++|++. +++.|+ |++..+|..+...+. .||+||++.+-+ ++-+.
T Consensus 105 SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~-~~l~d~--v~~~~~Dv~~~~~~~-~vDav~LDmp~PW~~le~ 180 (256)
T COG2519 105 SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-FGLGDR--VTLKLGDVREGIDEE-DVDAVFLDLPDPWNVLEH 180 (256)
T ss_pred chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH-hccccc--eEEEecccccccccc-ccCEEEEcCCChHHHHHH
Confidence 477775 788899999999999999999999999999 488766 999999998876554 899999998765 56678
Q ss_pred HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCC-CcEEEEEeeceEeeecCCCCCccccchhhhhhccc
Q psy14971 79 ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN-GTYLREKSGYPIDKPLGGLISLKEQMDEYKVQLQG 146 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~-~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~~~ 146 (156)
+.+.|+|||++++...+.+ |....+++..+ | +.+.+.++.+.++|+++-++
T Consensus 181 ~~~~Lkpgg~~~~y~P~ve---Qv~kt~~~l~~~g--------------~~~ie~~E~l~R~~~v~~~~ 232 (256)
T COG2519 181 VSDALKPGGVVVVYSPTVE---QVEKTVEALRERG--------------FVDIEAVETLVRRWEVRKEA 232 (256)
T ss_pred HHHHhCCCcEEEEEcCCHH---HHHHHHHHHHhcC--------------ccchhhheeeeheeeecccc
Confidence 8999999999999988653 33332222211 2 34555777777888776554
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-13 Score=104.39 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=77.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-ccCCCCCCC--CCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-KDGSKGHAE--EGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-gD~~~~~~~--~~~fD~I~i~~~~~~i~~ 77 (156)
||-|+ ||..+...++++++|+++++++.|++|+++ .|+.++ |+++. ||+.+.+.. .++||.||+++....+|+
T Consensus 71 GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~-ag~~~~--i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 71 GYSALWMALALPDDGRLTTIERDEERAEIARENLAE-AGVDDR--IELLLGGDALDVLSRLLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-cCCcce--EEEEecCcHHHHHHhccCCCccEEEEeCChhhCHH
Confidence 77775 677777689999999999999999999999 498775 88888 588765543 589999999999998885
Q ss_pred ---HHHhhCCCCcEEEEEecc
Q psy14971 78 ---EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~~~~ 95 (156)
.+.++|+|||.+|+...-
T Consensus 148 ~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 148 YLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHHHHHHhCCCcEEEEeecc
Confidence 568899999999997653
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-13 Score=104.25 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=77.9
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
+|++|+ +++.+| .++|+++|+++.|++.|++++.. .+..+ +++++||+.+..-++.+||++.+..+.++++
T Consensus 62 TGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~-~~~~~---i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~ 136 (238)
T COG2226 62 TGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK-KGVQN---VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDID 136 (238)
T ss_pred ccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc-cCccc---eEEEEechhhCCCCCCccCEEEeeehhhcCCCHH
Confidence 488887 467777 79999999999999999999998 58888 9999999988655678999999999998766
Q ss_pred ---HHHHhhCCCCcEEEEEecc
Q psy14971 77 ---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~~ 95 (156)
.++.+.|||||++++..-.
T Consensus 137 ~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 137 KALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred HHHHHHHHhhcCCeEEEEEEcC
Confidence 3678999999999987643
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-13 Score=104.23 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=67.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
+|+++. +++.+++.++|+++|++++|++.|+++++. .+..| |+++++|+.+....+.+||+|++..+.++++
T Consensus 58 tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-~~~~~---i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~ 133 (233)
T PF01209_consen 58 TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-EGLQN---IEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRE 133 (233)
T ss_dssp TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH-TT--S---EEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHH
T ss_pred hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh-hCCCC---eeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHH
Confidence 488886 567788899999999999999999999998 47778 9999999987544568899999999998776
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
.++.+.|||||++++..-
T Consensus 134 ~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEeec
Confidence 367899999999998653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=100.13 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCC-CCCcCEEEEccCCCch--
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i-- 75 (156)
.|.+++. +..+++.++|+++|+++++++.|++|++. +++ ++ ++++.+|..+.++. .+.||+||++.....+
T Consensus 51 tG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~-~g~~~~---v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~ 126 (198)
T PRK00377 51 TGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK-FGVLNN---IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKE 126 (198)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCC---eEEEEechhhhHhhcCCCCCEEEECCCcccHHH
Confidence 3777765 45667778999999999999999999998 484 67 99999998764433 3579999997765444
Q ss_pred -HHHHHhhCCCCcEEEEEeccCCCcceEEE-EEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhh
Q psy14971 76 -PKEILAQLKPGGRLVFHKGLHNGHYQSLA-YIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKV 142 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~~~~~~~~~~~-~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~ 142 (156)
.+.+.+.|+|||++++...+.+. ...+. .+++. +-......++..+-.++.+...|..+++.+-+
T Consensus 127 ~l~~~~~~LkpgG~lv~~~~~~~~-~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~npv~~~ 193 (198)
T PRK00377 127 IISASWEIIKKGGRIVIDAILLET-VNNALSALENI-GFNLEITEVIIAKGMKTKVGTAMMTRNPIFII 193 (198)
T ss_pred HHHHHHHHcCCCcEEEEEeecHHH-HHHHHHHHHHc-CCCeEEEEEehhhcccccCCcEeecCCCEEEE
Confidence 34667899999999986554322 22332 22232 22456666666667778888888877776544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-12 Score=94.89 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=98.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---H
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---K 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~ 77 (156)
+|.+++.+....+.++|+++|+++++++.|++|+++ .++.+ ++++.+|+.... ...||+|++++....++ +
T Consensus 42 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-~~~~~---i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~ 115 (187)
T PRK08287 42 TGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-FGCGN---IDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIID 115 (187)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCC---eEEEecCchhhc--CcCCCEEEECCCccCHHHHHH
Confidence 477887655556778999999999999999999988 47777 999999975433 25799999987655443 4
Q ss_pred HHHhhCCCCcEEEEEeccCCCcceE-EEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhhhc
Q psy14971 78 EILAQLKPGGRLVFHKGLHNGHYQS-LAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKVQL 144 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~ 144 (156)
.+.+.|+|||++++.....+. ... ...+.+.+-..+.........+.++.++..|...++.|-+..
T Consensus 116 ~~~~~Lk~gG~lv~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (187)
T PRK08287 116 WSLAHLHPGGRLVLTFILLEN-LHSALAHLEKCGVSELDCVQLQVSSLTPLGAGHYFKPNNPTFIISC 182 (187)
T ss_pred HHHHhcCCCeEEEEEEecHhh-HHHHHHHHHHCCCCcceEEEEEEEeeeEcCcceeeccCCCEEEEEE
Confidence 567899999999987532222 222 223333322235555666677888999999988888875543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-12 Score=101.92 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=75.6
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|+.|+ +|..+++.|+|+++|.+++.++.|++|+++ .|+.++ |+++.||+.+.++. .++||+||+++...
T Consensus 129 tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~-aGl~~~--I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~ 205 (278)
T PLN02476 129 TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL-AGVSHK--VNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKR 205 (278)
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHH
Confidence 488887 566677789999999999999999999999 488644 99999999764432 35899999999998
Q ss_pred chHH---HHHhhCCCCcEEEEEec
Q psy14971 74 EVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
.+++ .+.+.|+|||.+++...
T Consensus 206 ~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 206 MYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecC
Confidence 7764 56889999999999754
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-12 Score=98.38 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=73.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|+.++ ++..+++.++|+++|+++++++.|++|++++ |+.++ ++++.||+.+.++. .++||+||+++..+
T Consensus 79 ~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~--i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~ 155 (234)
T PLN02781 79 TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GVDHK--INFIQSDALSALDQLLNNDPKPEFDFAFVDADKP 155 (234)
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH
Confidence 367654 5666777899999999999999999999994 87654 99999999764331 36899999999877
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
.++ +.+.+.|+|||.+++...
T Consensus 156 ~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 156 NYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcC
Confidence 655 456889999999998643
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-12 Score=100.38 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=74.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.||-|+ ||..++++++|+++|++++.++.|+++++++ |+.++ |+++.||+.+.++. .++||.||+++...
T Consensus 56 ~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g~~~~--I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~ 132 (205)
T PF01596_consen 56 TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-GLDDR--IEVIEGDALEVLPELANDGEEGQFDFVFIDADKR 132 (205)
T ss_dssp TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-TGGGG--EEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGG
T ss_pred cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-CCCCc--EEEEEeccHhhHHHHHhccCCCceeEEEEccccc
Confidence 477785 6777888899999999999999999999994 87554 99999999753321 25899999999999
Q ss_pred chHH---HHHhhCCCCcEEEEEec
Q psy14971 74 EVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
++++ .+.+.|+|||.+++...
T Consensus 133 ~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 133 NYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp GHHHHHHHHHHHEEEEEEEEEETT
T ss_pred chhhHHHHHhhhccCCeEEEEccc
Confidence 8774 45789999999999754
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=92.07 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=73.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---H
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---K 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~ 77 (156)
.|.+++.+...++.++|+++|+++++++.+++++++ .+++| ++++.+|+.+. ...++||.|++++ ...++ +
T Consensus 53 tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-~~~~~---i~~i~~d~~~~-~~~~~fD~I~s~~-~~~~~~~~~ 126 (181)
T TIGR00138 53 AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-LGLNN---VEIVNGRAEDF-QHEEQFDVITSRA-LASLNVLLE 126 (181)
T ss_pred CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-hCCCC---eEEEecchhhc-cccCCccEEEehh-hhCHHHHHH
Confidence 477887766677778999999999999999999998 48888 99999998763 4457899999987 54444 4
Q ss_pred HHHhhCCCCcEEEEEeccC
Q psy14971 78 EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.|+|||++++..+..
T Consensus 127 ~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 127 LTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred HHHHhcCCCCEEEEEcCCC
Confidence 5678999999999987643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=84.11 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=66.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCch---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEV--- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i--- 75 (156)
.|.+++.+....+..+|+++|+++++++.|++++... +. ++ ++++++|+........+||+|++.. ....+
T Consensus 12 ~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~---i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~ 87 (112)
T PF12847_consen 12 TGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-GLSDR---ITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPL 87 (112)
T ss_dssp TSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-TTTTT---EEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHH
T ss_pred CCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCC---eEEEECccccCcccCCCCCEEEECCCccccccch
Confidence 3666665544446799999999999999999999552 44 45 9999999821233356799999999 44322
Q ss_pred ------HHHHHhhCCCCcEEEEEe
Q psy14971 76 ------PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~ 93 (156)
-+.+.+.|+|||+|++..
T Consensus 88 ~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 88 DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 245788999999999864
|
... |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-12 Score=98.72 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=75.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-------CCCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-------EGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-------~~~fD~I~i~~~~ 72 (156)
.||-|+ ||..++++|+|+++|++++.++.|++++++ .|+.++ |+++.||+.+.++. .++||+||+++..
T Consensus 90 ~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~-ag~~~~--I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK 166 (247)
T PLN02589 90 TGYSLLATALALPEDGKILAMDINRENYELGLPVIQK-AGVAHK--IDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK 166 (247)
T ss_pred hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCc--eEEEeccHHHHHHHHHhccccCCcccEEEecCCH
Confidence 367775 677778889999999999999999999999 487554 99999999764432 2689999999999
Q ss_pred CchHH---HHHhhCCCCcEEEEEec
Q psy14971 73 IEVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
..+++ .+.++|+|||.+++...
T Consensus 167 ~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 167 DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 88775 45789999999998754
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.3e-11 Score=90.74 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=73.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC--CchHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC--IEVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~--~~i~~~ 78 (156)
.|++++......+.++|+++|+++++++.|+++++. .++++ ++++.+|+.+... .++||+|++++.. ..+...
T Consensus 56 tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-~~l~~---i~~~~~d~~~~~~-~~~fDlV~~~~~~~~~~~l~~ 130 (187)
T PRK00107 56 AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-LGLKN---VTVVHGRAEEFGQ-EEKFDVVTSRAVASLSDLVEL 130 (187)
T ss_pred CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-cCCCC---EEEEeccHhhCCC-CCCccEEEEccccCHHHHHHH
Confidence 477777655556679999999999999999999999 48888 9999999877444 5689999997642 234457
Q ss_pred HHhhCCCCcEEEEEeccC
Q psy14971 79 ILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~ 96 (156)
+.+.|+|||++++..+..
T Consensus 131 ~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 131 CLPLLKPGGRFLALKGRD 148 (187)
T ss_pred HHHhcCCCeEEEEEeCCC
Confidence 789999999999987653
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=91.87 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=75.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCC-CCCCC--CCCcCEEEEccCCCc-
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGS-KGHAE--EGPYDIIHLGAACIE- 74 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~-~~~~~--~~~fD~I~i~~~~~~- 74 (156)
.|.||+ +++.++|.|+|+++|++++.++.|++|++.+ |+. | |++.++|.. ++... ...+|+||+|.+.+.
T Consensus 51 SG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl~~~---v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~ 126 (247)
T PF08704_consen 51 SGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GLDDN---VTVHHRDVCEEGFDEELESDFDAVFLDLPDPWE 126 (247)
T ss_dssp TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TCCTT---EEEEES-GGCG--STT-TTSEEEEEEESSSGGG
T ss_pred cHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CCCCC---ceeEecceecccccccccCcccEEEEeCCCHHH
Confidence 478885 6889999999999999999999999999994 885 6 999999984 45532 367999999998874
Q ss_pred hHHHHHhhC-CCCcEEEEEeccC
Q psy14971 75 VPKEILAQL-KPGGRLVFHKGLH 96 (156)
Q Consensus 75 i~~~l~~~L-~pGGrLv~~~~~~ 96 (156)
.-+.+.+.| ++||++++....-
T Consensus 127 ~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 127 AIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp GHHHHHHHE-EEEEEEEEEESSH
T ss_pred HHHHHHHHHhcCCceEEEECCCH
Confidence 556788899 8999999987643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=92.10 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=72.3
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|..+ .++.++++.+.|+++|+++.+++.+++|+++ .|+.| ++++.+|+.......+.||+|+++++|+..
T Consensus 83 G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~-~g~~~---v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~ 158 (264)
T TIGR00446 83 GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR-CGVLN---VAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRK 158 (264)
T ss_pred hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-cCCCc---EEEecCCHHHhhhhccCCCEEEEcCCCCCCccccc
Confidence 5555 4677887778999999999999999999999 59888 999999986533334569999999987632
Q ss_pred -----------------------HHHHHhhCCCCcEEEEEeccC
Q psy14971 76 -----------------------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 -----------------------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+...+.|||||+||...++.
T Consensus 159 ~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 159 DPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred ChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 124467899999999987643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-11 Score=90.33 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=88.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC--chHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI--EVPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~--~i~~ 77 (156)
+|.+++.+....+.++|+++|+++++++.|++|+++ ++.++ ++++.+|+.+.+.. ...+|.+++++... .+.+
T Consensus 51 ~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-~~~~~---v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~ 126 (196)
T PRK07402 51 TGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-FGVKN---VEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQ 126 (196)
T ss_pred CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-hCCCC---eEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHH
Confidence 477777554456678999999999999999999998 58878 99999998653332 23479998876532 4446
Q ss_pred HHHhhCCCCcEEEEEeccCCCcceEEE-EEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 78 EILAQLKPGGRLVFHKGLHNGHYQSLA-YIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~~~~~~~~~-~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
.+.+.|+|||++++....... ...+. .+++.....+...........++.+...|.++++.+
T Consensus 127 ~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 189 (196)
T PRK07402 127 AVWQYLKPGGRLVATASSLEG-LYAISEGLAQLQARNIEVVQAAVNRLETRGFSQVFAAVDPIF 189 (196)
T ss_pred HHHHhcCCCeEEEEEeecHHH-HHHHHHHHHhcCCCCceEEEEEhhhcccccCcCeeecCCCEE
Confidence 778899999999998764321 11111 122211112444444433344566666666666543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=83.09 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=73.5
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC--CCcCEEEEccCCCchH--
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE--GPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~--~~fD~I~i~~~~~~i~-- 76 (156)
|.++.. +..+++.++|+++|+++++++.|++++++ .+++| ++++++|..+ ++.. ..||.|++......++
T Consensus 15 G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-~~~~n---i~~~~~d~~~-l~~~~~~~~D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 15 GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-LGLDN---IEFIQGDIED-LPQELEEKFDIIISNGVLHHFPDP 89 (152)
T ss_dssp SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-TTSTT---EEEEESBTTC-GCGCSSTTEEEEEEESTGGGTSHH
T ss_pred cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-ccccc---cceEEeehhc-cccccCCCeeEEEEcCchhhccCH
Confidence 666654 44778889999999999999999999998 58888 9999999988 5532 6899999998876543
Q ss_pred ----HHHHhhCCCCcEEEEEecc
Q psy14971 77 ----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.|++||++++....
T Consensus 90 ~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 90 EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEECC
Confidence 3578999999999987653
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-10 Score=76.69 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=68.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc---hHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE---VPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~---i~~ 77 (156)
|.+++.+....+.++|+++|+++.+++.|+++++. .+..+ ++++.+|+..... ....||.|+++.+... +.+
T Consensus 31 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~ 106 (124)
T TIGR02469 31 GSITIEAARLVPNGRVYAIERNPEALRLIERNARR-FGVSN---IVIVEGDAPEALEDSLPEPDRVFIGGSGGLLQEILE 106 (124)
T ss_pred CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH-hCCCc---eEEEeccccccChhhcCCCCEEEECCcchhHHHHHH
Confidence 66665433333448999999999999999999998 47777 9999999764322 2358999999886654 456
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||++++.+-
T Consensus 107 ~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 107 AIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHcCCCCEEEEEec
Confidence 77899999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.5e-10 Score=89.02 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=71.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh--cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLN--IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~--~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~- 76 (156)
.|.++. +++..++.++|+++|++++|++.|+++.... ....+ ++++++|+.+.....++||+|++..+.++++
T Consensus 84 tG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~---i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 84 SGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKN---IEWIEGDATDLPFDDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCC---eEEEEcccccCCCCCCCEeEEEEecccccCCC
Confidence 367775 4566677789999999999999999876421 12356 9999999876433456899999998887664
Q ss_pred -----HHHHhhCCCCcEEEEEecc
Q psy14971 77 -----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~~~ 95 (156)
.++.+.|||||++++..-.
T Consensus 161 ~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 161 RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred HHHHHHHHHHHcCcCcEEEEEECC
Confidence 3678999999999987643
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=95.47 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=71.9
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCch-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIEV- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~i- 75 (156)
|..+ .++.++++.++|+++|+++.+++.+++|+++ +|++| |+++.+|+.... ...+.||+|+++++|+..
T Consensus 264 G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r-~g~~~---v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G 339 (434)
T PRK14901 264 GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR-LGLKS---IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLG 339 (434)
T ss_pred chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-cCCCe---EEEEeCChhhcccccccccccCCEEEEeCCCCccc
Confidence 5555 4677777789999999999999999999999 59988 999999987643 123579999999887521
Q ss_pred ---------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ---------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ---------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.|||||+||..+++
T Consensus 340 ~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 340 TLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred ccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 12457899999999987764
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-10 Score=85.46 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=71.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++..++.++|+++|+++++++.|+++++. .+.++ ++++.+|+.+.....++||.|+++...+.++
T Consensus 57 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 132 (231)
T TIGR02752 57 ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-AGLHN---VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQ 132 (231)
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh-cCCCc---eEEEEechhcCCCCCCCccEEEEecccccCCCHHH
Confidence 56554 566778889999999999999999999987 47777 9999999876433457899999988776543
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 133 ~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 133 VLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred HHHHHHHHcCcCeEEEEEEC
Confidence 356789999999998654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-10 Score=83.15 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=72.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
.|.+++.+...++..+|+++|+++.+++.|++|++.+ ++++ ++++.+|..+..+ ..+||.|+++.+...-
T Consensus 42 ~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-~~~~---v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~ 116 (170)
T PF05175_consen 42 SGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-GLEN---VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGL 116 (170)
T ss_dssp TSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-TCTT---EEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHH
T ss_pred hHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-Cccc---ccccccccccccc-ccceeEEEEccchhcccccch
Confidence 4889988878888789999999999999999999995 8888 9999999987655 5789999999876421
Q ss_pred ------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-....+.|+|||+|++....
T Consensus 117 ~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 117 DLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHhccCCCEEEEEeec
Confidence 12457899999999887653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=94.24 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=72.1
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCch----
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i---- 75 (156)
|..| .++.++++.++|+++|+++.+++.+++|+++ +|+++ ++++.+|+.... ...++||+|+++++|+..
T Consensus 249 Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r-~g~~~---v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~ 324 (431)
T PRK14903 249 GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR-LKLSS---IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTAR 324 (431)
T ss_pred cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-cCCCe---EEEEECchhhhhhhhhccCCEEEECCCCCCCcccc
Confidence 5555 4677888889999999999999999999999 59888 999999987532 124679999999988421
Q ss_pred --H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 --P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| +...+.|||||+||..+++
T Consensus 325 ~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 325 NHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 2346889999999998874
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=87.02 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=70.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|..++ ++...++.++|+++|+++++++.|+++.+. .++++ ++++.+|..+.....+.||.|+++......
T Consensus 89 G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-~g~~~---v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~ 164 (272)
T PRK11873 89 GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-AGYTN---VEFRLGEIEALPVADNSVDVIISNCVINLSPDKER 164 (272)
T ss_pred CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-cCCCC---EEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHH
Confidence 55554 456678888999999999999999999988 58878 999999986533234689999998765433
Q ss_pred -HHHHHhhCCCCcEEEEEe
Q psy14971 76 -PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~ 93 (156)
...+.+.|||||+|++..
T Consensus 165 ~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 165 VFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred HHHHHHHHcCCCcEEEEEE
Confidence 346789999999999853
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=91.31 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
|..+ .++++++..++|+++|+++++++.+++|+++ .|++| |+++.+|+.... ...+||+|+++++|+.
T Consensus 262 G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~g~~~---v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r 336 (445)
T PRK14904 262 GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA-LGITI---IETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGR 336 (445)
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-hCCCe---EEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhc
Confidence 5555 4677777778999999999999999999999 59888 999999987643 3467999999987632
Q ss_pred ----------------------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 75 ----------------------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 ----------------------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.....+.|||||+|++.+++.
T Consensus 337 ~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 337 RAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1224567899999999988744
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=72.01 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=62.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|..+. ++.. +..+|+++|+++++++.++++... .+ ++++.+|..+....+..||.|++......++
T Consensus 8 G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~----~~---~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 8 GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN----EG---VSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT----ST---EEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc----cC---chheeehHHhCccccccccccccccceeeccCHHH
Confidence 44443 3444 568999999999999999998865 24 7899999887644568999999999887663
Q ss_pred --HHHHhhCCCCcEEEE
Q psy14971 77 --KEILAQLKPGGRLVF 91 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~ 91 (156)
.++.+.|||||++++
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 367899999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=90.19 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=70.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~----- 74 (156)
|..++ ++..+++.++|+++|+++++++.+++|+++ .|+++ ++++++|+.+.... ...||+|++++++..
T Consensus 262 G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~-~g~~~---v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 262 GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR-LGLTN---IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe---EEEEeCCcccccchhcccCCEEEEcCCCCCCeeec
Confidence 66664 567777779999999999999999999999 59888 99999998764321 257999999987642
Q ss_pred -----------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -----------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.....+.|||||+||...++
T Consensus 338 ~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 338 RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 112346789999999987654
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=87.07 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=67.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-------chHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------~i~~~l 79 (156)
+++...|+++++++|+++++++.||+++++..++.++ |+|+.+|+.+.....+.||.||+.+-.. .+-+.+
T Consensus 142 laa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r--V~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l 219 (296)
T PLN03075 142 LAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKR--MFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHL 219 (296)
T ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCC--cEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHH
Confidence 4556678899999999999999999999531366554 9999999987544457899999994221 233577
Q ss_pred HhhCCCCcEEEEEec
Q psy14971 80 LAQLKPGGRLVFHKG 94 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~ 94 (156)
.+.|+|||.|++-..
T Consensus 220 ~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 220 GKHMAPGALLMLRSA 234 (296)
T ss_pred HHhcCCCcEEEEecc
Confidence 899999999999753
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-09 Score=90.14 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=73.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i----- 75 (156)
|..+.+|.+++..|.|+|.|+++..++..++|+++ +|+.| +.+...|+..... ....||+|++|++|+..
T Consensus 126 gKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r-~G~~n---v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk 201 (470)
T PRK11933 126 SKTTQIAALMNNQGAIVANEYSASRVKVLHANISR-CGVSN---VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRK 201 (470)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe---EEEEeCchhhhhhhchhhcCeEEEcCCCCCCccccc
Confidence 45567888998889999999999999999999999 69999 9999999865221 13569999999999731
Q ss_pred -H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 -P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| +...+.|||||+||..+++
T Consensus 202 ~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 202 DPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2 1236789999999998775
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.1e-09 Score=87.27 Aligned_cols=91 Identities=26% Similarity=0.317 Sum_probs=67.0
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCch---
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i--- 75 (156)
|..+ .++++++ .++|+++|+++++++.+++|+++ .|++.. +++..+|...... ...+||+|+++++|+..
T Consensus 250 G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r-~g~~~~--v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 250 GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKR-LGLTIK--AETKDGDGRGPSQWAENEQFDRILLDAPCSATGVI 325 (426)
T ss_pred cHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHH-cCCCeE--EEEeccccccccccccccccCEEEEcCCCCCCccc
Confidence 5555 4566666 68999999999999999999999 586422 5557777654222 34679999999876521
Q ss_pred ---H----------------------HHHHhhCCCCcEEEEEeccC
Q psy14971 76 ---P----------------------KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 ---~----------------------~~l~~~L~pGGrLv~~~~~~ 96 (156)
| ....+.|||||+||+.+++-
T Consensus 326 ~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 326 RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 23567899999999987743
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=74.41 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=67.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCch---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i--- 75 (156)
.|.+.+.+...+ ..+|+++|+++..++.|+.|++. .+...+ ++++.+|..+.. ....+||.|+.+.+....
T Consensus 11 ~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~--~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~ 86 (117)
T PF13659_consen 11 SGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NGLDDR--VEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGD 86 (117)
T ss_dssp TCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CTTTTT--EEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT-
T ss_pred hHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-ccCCce--EEEEECchhhchhhccCceeEEEEECCCCcccccc
Confidence 366666655556 68999999999999999999998 476433 999999986643 235789999999876421
Q ss_pred -----------HHHHHhhCCCCcEEEEEec
Q psy14971 76 -----------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -----------~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||++++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 87 KAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp ---GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2356899999999999764
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=84.00 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=67.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++.. +++|+++|+++.+++.|+++.+.. +..++ ++++.+|+.+.....+.||+|++..+..+++
T Consensus 130 G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~-g~~~~--v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~ 204 (340)
T PLN02244 130 GGSSRYLARKY--GANVKGITLSPVQAARANALAAAQ-GLSDK--VSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRK 204 (340)
T ss_pred CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc-CCCCc--eEEEEcCcccCCCCCCCccEEEECCchhccCCHHH
Confidence 55554 34444 479999999999999999998873 66422 9999999876433457899999988876654
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 205 ~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 205 FVQELARVAAPGGRIIIVT 223 (340)
T ss_pred HHHHHHHHcCCCcEEEEEE
Confidence 36789999999999865
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=86.27 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=66.6
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCc----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIE---- 74 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~---- 74 (156)
|..++. ++.. +.++|+++|+++++++.+++|+++ .|+ + ++++.+|+.+.. ....+||+|+++++|..
T Consensus 256 G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~-~g~-~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~ 329 (427)
T PRK10901 256 GGKTAHILELA-PQAQVVALDIDAQRLERVRENLQR-LGL-K---ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVI 329 (427)
T ss_pred ChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH-cCC-C---eEEEEcCcccchhhcccCCCCEEEECCCCCccccc
Confidence 666654 4444 348999999999999999999999 576 4 789999987532 22467999999998752
Q ss_pred ------------------------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ------------------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ------------------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.+.|||||+|++.++
T Consensus 330 ~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 330 RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12345678999999998775
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.8e-09 Score=79.14 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=69.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCC-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~----- 73 (156)
|.+++......|.+.|+++|+++++++.|+++++. .++.| ++++.+|+.+.. ...+.+|.|+++.+.+
T Consensus 28 G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~-~~l~n---i~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~ 103 (194)
T TIGR00091 28 GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK-LGLKN---LHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKR 103 (194)
T ss_pred cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-hCCCC---EEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCC
Confidence 55665333446778999999999999999999988 48888 999999986432 2335799999987543
Q ss_pred ---------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|||||+|++....
T Consensus 104 h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 104 HNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred ccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 1335678999999999987654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=81.45 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++......+..+|+++|+++++++.|++|++.+ ++.++ ++++.+|..+..+ ...||.|+++.+...
T Consensus 132 sG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~~~~--i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~ 207 (284)
T TIGR03533 132 SGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GLEDR--VTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMAD 207 (284)
T ss_pred hhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEECchhhccC-CCCccEEEECCCCCCccchhh
Confidence 3666665545556789999999999999999999984 77433 9999999876554 357999999854210
Q ss_pred -------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+...+.+.|+|||++++-++.
T Consensus 208 l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 208 LPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 112346799999999998764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-09 Score=81.60 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=75.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~ 73 (156)
.||-++ +|..+.++|+|+++|++++-++.+.+-.+.+ |+... |++++|++.+.+. +.+.||.+|+++-..
T Consensus 84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-gv~~K--I~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~ 160 (237)
T KOG1663|consen 84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-GVDHK--ITFIEGPALESLDELLADGESGTFDFAFVDADKD 160 (237)
T ss_pred cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-cccce--eeeeecchhhhHHHHHhcCCCCceeEEEEccchH
Confidence 367675 4777888999999999999999999888884 87544 9999999976542 247899999999887
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
++- +.+.++||+||.|++...
T Consensus 161 nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 161 NYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred HHHHHHHHHHhhcccccEEEEecc
Confidence 654 678899999999999763
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=79.94 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=72.0
Q ss_pred CchHHH-HHHhcCCC-----CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc
Q psy14971 1 MGDLNV-IVGIKGER-----ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 1 ~G~la~-la~l~g~~-----g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~ 74 (156)
+||+|+ +...+... ++|+.+|++|+|++.++++..+ .++.....+.+++||+.+...++..||+..+..+.++
T Consensus 111 TGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN 189 (296)
T KOG1540|consen 111 TGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRN 189 (296)
T ss_pred cchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceec
Confidence 488887 46666653 8999999999999999999866 3442211289999999876556788999999998876
Q ss_pred hH------HHHHhhCCCCcEEEEEe
Q psy14971 75 VP------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~------~~l~~~L~pGGrLv~~~ 93 (156)
.+ .+..+.||||||+.+..
T Consensus 190 ~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 190 VTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 54 35689999999998754
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=77.97 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=67.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC-CCCC--CCCCCcCEEEEccCCC-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG-SKGH--AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~-~~~~--~~~~~fD~I~i~~~~~----- 73 (156)
|.++.......+..+|+++|+++++++.|+++++.. +..| ++++.+|+ .... ...++||.|++..+.+
T Consensus 52 G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-~~~~---v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~ 127 (202)
T PRK00121 52 GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-GLTN---LRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKR 127 (202)
T ss_pred CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc-CCCC---EEEEecCHHHHHHHHcCccccceEEEECCCCCCCcc
Confidence 666654333346689999999999999999999884 7778 99999998 3211 2246799999976432
Q ss_pred ---------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+-..+.+.|||||++++....
T Consensus 128 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 128 HHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred ccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 1235678899999999997643
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=80.98 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------- 73 (156)
|.+++......+..+|+++|+++++++.|++|++.+ ++.++ ++++++|..+..+ ..+||.|+++.+..
T Consensus 145 G~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l~~~--i~~~~~D~~~~l~-~~~fDlIvsNPPyi~~~~~~~l 220 (307)
T PRK11805 145 GCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GLEDR--VTLIESDLFAALP-GRRYDLIVSNPPYVDAEDMADL 220 (307)
T ss_pred hHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCc--EEEEECchhhhCC-CCCccEEEECCCCCCccchhhc
Confidence 666665544556789999999999999999999984 76433 9999999876554 35799999985321
Q ss_pred -----------------------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -----------------------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -----------------------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|+|||++++-++.
T Consensus 221 ~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 221 PAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0112346789999999998764
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.9e-09 Score=81.97 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=65.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCC-CCCcCEEEEccCCC-ch---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI-EV--- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~-~i--- 75 (156)
|.++.......|..+|+++|+++++++.|++++... +. ++ ++++.+|+.+.... ..+||.|++++-.. .+
T Consensus 78 G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~r---v~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~ 153 (262)
T PRK04457 78 GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-ENGER---FEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDA 153 (262)
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-CCCCc---eEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccc
Confidence 666654433446789999999999999999998642 33 45 99999998654332 35799999986321 22
Q ss_pred ------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||++++...
T Consensus 154 l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 154 LCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred cCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 2456789999999999754
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=81.49 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=68.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------- 73 (156)
|.+.+.+... +..|+++|++++|++.|++|++. .|+.+ +.++.+|+.+.......||.|+++.+..
T Consensus 194 G~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~-~g~~~---i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~ 267 (329)
T TIGR01177 194 GGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEH-YGIED---FFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGD 267 (329)
T ss_pred CHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHH-hCCCC---CeEEecchhcCCcccCCCCEEEECCCCcCcccccCC
Confidence 5565555554 47999999999999999999999 58888 9999999976433346899999986531
Q ss_pred -------chHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 -------EVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 -------~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.+.+.|+|||++++.+.+.
T Consensus 268 ~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 268 GLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 11235678999999999987653
|
This family is found exclusively in the Archaea. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=78.66 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=66.3
Q ss_pred chHHH-HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. +++.+ .++++|+++|++++|++.|+++++. .+..++ ++++.+|+.+. + ...+|.|+++...+.++
T Consensus 68 G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~--v~~~~~d~~~~-~-~~~~D~vv~~~~l~~l~~~~ 142 (247)
T PRK15451 68 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTP--VDVIEGDIRDI-A-IENASMVVLNFTLQFLEPSE 142 (247)
T ss_pred CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCC--eEEEeCChhhC-C-CCCCCEEehhhHHHhCCHHH
Confidence 55553 34433 5778999999999999999999987 465432 99999998753 2 24599999987765442
Q ss_pred -----HHHHhhCCCCcEEEEEe
Q psy14971 77 -----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||+|++..
T Consensus 143 ~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 143 RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 46789999999999964
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=82.03 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=66.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---chHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---EVPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~i~~ 77 (156)
+|.||+.|..+|. .+|+|+|+||..++.|++|.+.+ +++.. +.....+..+ .+..++||.|+.+--.. .+.+
T Consensus 173 SGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N-~v~~~--~~~~~~~~~~-~~~~~~~DvIVANILA~vl~~La~ 247 (300)
T COG2264 173 SGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN-GVELL--VQAKGFLLLE-VPENGPFDVIVANILAEVLVELAP 247 (300)
T ss_pred hhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc-CCchh--hhcccccchh-hcccCcccEEEehhhHHHHHHHHH
Confidence 5899999999996 88999999999999999999986 65431 2233334333 23447999999987332 3446
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
.+.+.|||||++++.
T Consensus 248 ~~~~~lkpgg~lIlS 262 (300)
T COG2264 248 DIKRLLKPGGRLILS 262 (300)
T ss_pred HHHHHcCCCceEEEE
Confidence 778999999999995
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-08 Score=72.79 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=64.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|.++..+...++ +|+++|+++++++.|++|++.+ +. + ++++.+|..+.. .++||.|+++.+....
T Consensus 31 G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~ 101 (179)
T TIGR00537 31 GLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NV-G---LDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR 101 (179)
T ss_pred hHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CC-c---eEEEEccccccc--CCcccEEEECCCCCCCcchhcc
Confidence 566655444443 8999999999999999999873 65 6 899999987643 3589999998764211
Q ss_pred ---------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ---------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ---------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||++++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 102 GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 23456899999999997654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=79.35 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=65.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++...... +.+|+++|++++|++.|+++++. .|+ ++ ++++++|+.+..+ ..++||.|++....+.++
T Consensus 56 G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~-~g~~~~---v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~ 129 (255)
T PRK11036 56 GQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEA-KGVSDN---MQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPK 129 (255)
T ss_pred hHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHh-cCCccc---eEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHH
Confidence 5555433222 47999999999999999999988 476 45 9999999865321 246899999988765442
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 130 ~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHHcCCCeEEEEEEE
Confidence 467899999999988653
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.4e-08 Score=76.24 Aligned_cols=84 Identities=15% Similarity=0.056 Sum_probs=63.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i-- 75 (156)
|.++. ++..++ .++|+++|++++|++.++++++. . .| +.++.+|+.... .-..+||+|+++.+.+..
T Consensus 84 G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-~--~n---v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~ 156 (226)
T PRK04266 84 GTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-R--KN---IIPILADARKPERYAHVVEKVDVIYQDVAQPNQAE 156 (226)
T ss_pred CHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-c--CC---cEEEECCCCCcchhhhccccCCEEEECCCChhHHH
Confidence 66664 566776 68999999999999988888765 2 57 999999986521 112469999998765432
Q ss_pred --HHHHHhhCCCCcEEEEE
Q psy14971 76 --PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~ 92 (156)
-..+.+.|||||++++.
T Consensus 157 ~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 157 IAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 34667899999999995
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=74.76 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=58.3
Q ss_pred EEEeCCHHHHHHHHHHHhhh-cC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCcEE
Q psy14971 18 LILNHYMKVKSKNQNNKKLN-IK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGGRL 89 (156)
Q Consensus 18 ~avD~~~~~~~~A~~~l~~~-~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGGrL 89 (156)
+|+|++++|++.|+++.+.. .+ ..+ ++++++|+.+.....++||+|++..+.++++ .++.+.|||||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~---i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKC---IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCc---eEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 47999999999998876531 11 246 9999999976433456899999998887654 3678999999999
Q ss_pred EEEecc
Q psy14971 90 VFHKGL 95 (156)
Q Consensus 90 v~~~~~ 95 (156)
++..-.
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 987543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-08 Score=80.82 Aligned_cols=90 Identities=26% Similarity=0.314 Sum_probs=72.1
Q ss_pred chHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNVIVGIKGE-RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~la~l~g~-~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i-- 75 (156)
|..+.+|+++.. ++.|+++|+++..++..++|+++ +|+.| +.++..|+... ++...+||+|+++++|+..
T Consensus 169 GKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R-lG~~n---v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~ 244 (355)
T COG0144 169 GKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR-LGVRN---VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGV 244 (355)
T ss_pred CHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH-cCCCc---eEEEecccccccccccccCcCcEEEECCCCCCCcc
Confidence 667888988875 45679999999999999999999 69999 99999987532 2223369999999999732
Q ss_pred ----H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 ----P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ----~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| +..++.|||||+||..+++
T Consensus 245 irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 245 IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 1 1346889999999998873
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.7e-08 Score=73.89 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=63.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..... .+.+|+++|+++++++.|+++.+.. ++.+ ++++.+|..+... ..+||.|++......++
T Consensus 42 G~~a~~La~--~g~~V~gvD~S~~~i~~a~~~~~~~-~~~~---v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~ 114 (197)
T PRK11207 42 GRNSLYLAA--NGFDVTAWDKNPMSIANLERIKAAE-NLDN---LHTAVVDLNNLTF-DGEYDFILSTVVLMFLEAKTIP 114 (197)
T ss_pred CHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCc---ceEEecChhhCCc-CCCcCEEEEecchhhCCHHHHH
Confidence 555543222 2469999999999999999999884 7777 9999999865322 35799999988765432
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 115 ~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 115 GLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 35678999999965543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-08 Score=75.22 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=65.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++.. +..+|+++|+++++++.|+++++. .|+.++ ++++.+|.... +..++||.|++.....+++
T Consensus 11 G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~-~gl~~~--i~~~~~d~~~~-~~~~~fD~I~~~~~l~~~~~~~~ 85 (224)
T smart00828 11 GSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRA-LGLQGR--IRIFYRDSAKD-PFPDTYDLVFGFEVIHHIKDKMD 85 (224)
T ss_pred CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-cCCCcc--eEEEecccccC-CCCCCCCEeehHHHHHhCCCHHH
Confidence 44444 34433 457999999999999999999988 476543 99999998553 2235799999877665443
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 86 ~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 86 LFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHcCCCCEEEEEEc
Confidence 467889999999998653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=78.28 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|+++|+++|+++.|++.|+++ + ++++.+|+.+. ...++||+|+++...+.+++
T Consensus 41 G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~---~~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~d~~~~ 108 (255)
T PRK14103 41 GNLTRYLARRWPGAVIEALDSSPEMVAAARER--------G---VDARTGDVRDW-KPKPDTDVVVSNAALQWVPEHADL 108 (255)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------C---CcEEEcChhhC-CCCCCceEEEEehhhhhCCCHHHH
Confidence 66665433334678999999999999998642 3 77889998653 34578999999998876653
Q ss_pred --HHHhhCCCCcEEEEEec
Q psy14971 78 --EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 --~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|||||++++.+.
T Consensus 109 l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 109 LVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred HHHHHHhCCCCcEEEEEcC
Confidence 56788999999998653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-07 Score=79.87 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=69.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC---CCccceEEEEccCCCCCCCCCCcCEEEEccCCCc---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ---NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE--- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~---~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~--- 74 (156)
.|.+++.+....|..+|+++|+++.+++.|++|++.+ +. .+ ++++.+|+....+ ...||.|+++.+.+.
T Consensus 239 tGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~---v~~~~~D~l~~~~-~~~fDlIlsNPPfh~~~~ 313 (378)
T PRK15001 239 NGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDR---CEFMINNALSGVE-PFRFNAVLCNPPFHQQHA 313 (378)
T ss_pred ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CcccCce---EEEEEccccccCC-CCCEEEEEECcCcccCcc
Confidence 3778877666678899999999999999999999874 43 35 8999999876543 357999999877542
Q ss_pred --------hHHHHHhhCCCCcEEEEEe
Q psy14971 75 --------VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 --------i~~~l~~~L~pGGrLv~~~ 93 (156)
+.....+.|+|||+|+++.
T Consensus 314 ~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 314 LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1234578999999999985
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7e-08 Score=76.14 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=63.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......+.++|+++|++++|++.|++++ .+ ++++.+|+.+.. ...+||+|+++.+.+.++
T Consensus 43 G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~---~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~ 112 (258)
T PRK01683 43 GNSTELLVERWPAARITGIDSSPAMLAEARSRL------PD---CQFVEADIASWQ-PPQALDLIFANASLQWLPDHLEL 112 (258)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CC---CeEEECchhccC-CCCCccEEEEccChhhCCCHHHH
Confidence 666654333345689999999999999998764 34 788999986533 345899999999887654
Q ss_pred -HHHHhhCCCCcEEEEEe
Q psy14971 77 -KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 113 l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 113 FPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHhcCCCcEEEEEC
Confidence 35788999999999865
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=73.62 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.++.......+...|+++|+++.+++.|+++++. .++.+ ++++.+|..+..+ ..+||.|+++.+...
T Consensus 99 G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~---~~~~~~d~~~~~~-~~~fD~Vi~npPy~~~~~~~~~ 173 (251)
T TIGR03534 99 GAIALALAKERPDARVTAVDISPEALAVARKNAAR-LGLDN---VTFLQSDWFEPLP-GGKFDLIVSNPPYIPEADIHLL 173 (251)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCCCe---EEEEECchhccCc-CCceeEEEECCCCCchhhhhhc
Confidence 56665444444567999999999999999999988 48877 9999999876443 468999999754321
Q ss_pred -------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+.+.+.|+|||++++..+.
T Consensus 174 ~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 174 DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 113456789999999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-08 Score=80.36 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=66.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++..... .++.|++||.++++++.|+++.+.. +. .+ ++++++|+.+.....+.||+|++....++++
T Consensus 143 G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~-~~~~~---i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~ 216 (322)
T PLN02396 143 GLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMD-PVTST---IEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAE 216 (322)
T ss_pred CHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhc-Ccccc---eeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHH
Confidence 666653333 3479999999999999999987652 33 36 9999999865333456899999998877664
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 217 ~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 217 FCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHHHHHHHcCCCcEEEEEEC
Confidence 357899999999998764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.4e-08 Score=77.22 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=65.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch---HH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---PK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~~ 77 (156)
.|.+++.+...|. .+|+++|+++.+++.|++|++.+ ++.++ +.+..++... . ...+||+|+++.....+ ..
T Consensus 170 sG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n-~~~~~--~~~~~~~~~~-~-~~~~fDlVvan~~~~~l~~ll~ 243 (288)
T TIGR00406 170 SGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN-QVSDR--LQVKLIYLEQ-P-IEGKADVIVANILAEVIKELYP 243 (288)
T ss_pred hhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CCCcc--eEEEeccccc-c-cCCCceEEEEecCHHHHHHHHH
Confidence 3778876666664 69999999999999999999885 66543 7777776332 2 24689999998765533 34
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
.+.+.|||||+|++.-
T Consensus 244 ~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 244 QFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHHHcCCCcEEEEEe
Confidence 6789999999999853
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=76.50 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=67.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------- 73 (156)
|.+++......+..+|+++|+++++++.|++|++. .++.++ ++++.+|..+..+. .+||+|+++.+.-
T Consensus 126 G~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~-~~~~~~--v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~ 201 (284)
T TIGR00536 126 GCIALALAYEFPNAEVIAVDISPDALAVAEENAEK-NQLEHR--VEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADL 201 (284)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEECchhccCcC-CCccEEEECCCCCCcchhhcC
Confidence 66776555555668999999999999999999998 477543 99999998775433 3799999974321
Q ss_pred -----c------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -----E------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -----~------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
. +.....+.|+|||+|++-++.
T Consensus 202 ~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 202 PNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 0 112345789999999998875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-08 Score=77.94 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|..+-+...--|.+.|+|+|.|++|++.|++++ .| .+|..+|..+ |....+.|.+|.++..+.+|+
T Consensus 42 GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~---~~f~~aDl~~-w~p~~~~dllfaNAvlqWlpdH~~l 111 (257)
T COG4106 42 GNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PD---ATFEEADLRT-WKPEQPTDLLFANAVLQWLPDHPEL 111 (257)
T ss_pred CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CC---CceecccHhh-cCCCCccchhhhhhhhhhccccHHH
Confidence 445544444457799999999999999997665 35 7899999876 666688999999999987774
Q ss_pred --HHHhhCCCCcEEEEEecc
Q psy14971 78 --EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 --~l~~~L~pGGrLv~~~~~ 95 (156)
.|+.+|+|||.|.+-+..
T Consensus 112 l~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 112 LPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred HHHHHHhhCCCceEEEECCC
Confidence 688999999999998763
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.4e-08 Score=75.63 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch---HHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---PKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~~~ 78 (156)
|.+++.+...+. .+|+++|+++.+++.|++|++.+ ++... +.+..+|. +||.|+++.....+ .+.
T Consensus 131 G~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~-~~~~~--~~~~~~~~--------~fD~Vvani~~~~~~~l~~~ 198 (250)
T PRK00517 131 GILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN-GVELN--VYLPQGDL--------KADVIVANILANPLLELAPD 198 (250)
T ss_pred HHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc-CCCce--EEEccCCC--------CcCEEEEcCcHHHHHHHHHH
Confidence 677776666665 47999999999999999999884 65221 55544432 79999987654433 346
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
+.+.|||||++++.-
T Consensus 199 ~~~~LkpgG~lilsg 213 (250)
T PRK00517 199 LARLLKPGGRLILSG 213 (250)
T ss_pred HHHhcCCCcEEEEEE
Confidence 788999999999963
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=73.30 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=64.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.+++.+...+ .++|+++|+++++++.|++|++.. +. + ++++.+|..+..+ ..+||+|+++.+...
T Consensus 48 G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-~~-~---~~~~~~d~~~~~~-~~~fD~Vi~npPy~~~~~~~~~ 120 (223)
T PRK14967 48 GALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-GV-D---VDVRRGDWARAVE-FRPFDVVVSNPPYVPAPPDAPP 120 (223)
T ss_pred HHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-CC-e---eEEEECchhhhcc-CCCeeEEEECCCCCCCCccccc
Confidence 55665544444 369999999999999999999884 65 5 8999999876433 468999999854211
Q ss_pred --------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 --------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 --------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+...+.|||||++++...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 121 SRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 112356899999999987654
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-08 Score=82.32 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=67.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCC----CCCCcCEEEEccCCC-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACI- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~- 73 (156)
.|.+++.+.. +...+|+++|+++.+++.|++|++.+ |++ + ++++.+|+.+.+. ...+||.|+++.+.-
T Consensus 231 tG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~N-gl~~~~---v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 231 TGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELN-KLDLSK---AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV 305 (396)
T ss_pred CCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCc---EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 3666665443 43469999999999999999999985 764 6 9999999876432 235799999997641
Q ss_pred ----chH----------HHHHhhCCCCcEEEEEecc
Q psy14971 74 ----EVP----------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ----~i~----------~~l~~~L~pGGrLv~~~~~ 95 (156)
.+. ....+.|+|||.|+...+.
T Consensus 306 ~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 306 ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 111 1346899999999986653
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=71.13 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=66.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|.++. ++...++.++|+++|+++++++.|+++... ...+ ++++.+|........+.||.|++......+
T Consensus 31 G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~---~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~ 105 (241)
T PRK08317 31 GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPN---VEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPAR 105 (241)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCc---eEEEecccccCCCCCCCceEEEEechhhccCCHHH
Confidence 55554 566666778999999999999999998443 2356 999999976532234689999998776543
Q ss_pred -HHHHHhhCCCCcEEEEEec
Q psy14971 76 -PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||++++...
T Consensus 106 ~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 106 ALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred HHHHHHHHhcCCcEEEEEec
Confidence 3467899999999998653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=76.78 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=67.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++.+....+..+|+++|+++.+++.|++|++.+ ++ . .+++.+|+.... .++||.|+++.+.+.
T Consensus 207 ~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l-~---~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~ 279 (342)
T PRK09489 207 AGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GL-E---GEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSL 279 (342)
T ss_pred cCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC-C---CEEEEccccccc--CCCccEEEECCCccCCccccH
Confidence 3777776555567789999999999999999999985 65 3 577888876533 468999999987653
Q ss_pred -----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|||||+|+++..
T Consensus 280 ~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 280 DAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred HHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 12345788999999988764
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=73.79 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=63.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~----- 74 (156)
|.+++......+..+|+++|+++++++.|++|++.+ + ++++.+|..+..+. .+.||.|+++.+...
T Consensus 98 G~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~----~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~ 170 (251)
T TIGR03704 98 GAVGAALAAALDGIELHAADIDPAAVRCARRNLADA----G---GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIA 170 (251)
T ss_pred HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----C---CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhh
Confidence 666765433344579999999999999999999873 3 57899998764432 257999999976421
Q ss_pred ---------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ---------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ---------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+...+.|+|||++++..+.
T Consensus 171 ~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 171 LMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred cCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 011235789999999998864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=70.33 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=61.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..+... +.+|+++|+++++++.++++.+.. ++ + +++..+|.... +...+||.|++......++
T Consensus 42 G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~-~~-~---v~~~~~d~~~~-~~~~~fD~I~~~~~~~~~~~~~~~ 113 (195)
T TIGR00477 42 GRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE-NL-P---LRTDAYDINAA-ALNEDYDFIFSTVVFMFLQAGRVP 113 (195)
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh-CC-C---ceeEeccchhc-cccCCCCEEEEecccccCCHHHHH
Confidence 6677654433 379999999999999999998773 65 4 77788886542 2235799999987765432
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 114 ~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 114 EIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred HHHHHHHHHhCCCcEEEEEE
Confidence 35678999999966654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-09 Score=70.46 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCchH------HHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEVP------KEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i~------~~l~~~L~ 84 (156)
+..+++++|+++.|++.|++++.. .+..+ ......+..+.... ..+||.|++....++++ ..+.+.||
T Consensus 19 ~~~~~~~~D~s~~~l~~a~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 19 PDARYTGVDISPSMLERARERLAE-LGNDN---FERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLK 94 (99)
T ss_dssp -EEEEEEEESSSSTTSTTCCCHHH-CT------EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-T
T ss_pred CCCEEEEEECCHHHHHHHHHHhhh-cCCcc---eeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcC
Confidence 679999999999999999999988 35444 44555444332222 25899999999988764 25678999
Q ss_pred CCcEE
Q psy14971 85 PGGRL 89 (156)
Q Consensus 85 pGGrL 89 (156)
|||+|
T Consensus 95 pgG~l 99 (99)
T PF08242_consen 95 PGGIL 99 (99)
T ss_dssp SS-EE
T ss_pred CCCCC
Confidence 99986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-08 Score=79.55 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=62.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc---hHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE---VPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~---i~~ 77 (156)
+|.|++.|.++|. .+|+|+|+||..++.|++|++.+ |+.++ +.+. ...+ .. ..+||.|+.+--..- +.+
T Consensus 172 SGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N-~~~~~--~~v~--~~~~-~~-~~~~dlvvANI~~~vL~~l~~ 243 (295)
T PF06325_consen 172 SGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN-GVEDR--IEVS--LSED-LV-EGKFDLVVANILADVLLELAP 243 (295)
T ss_dssp TSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT-T-TTC--EEES--CTSC-TC-CS-EEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc-CCCee--EEEE--Eecc-cc-cccCCEEEECCCHHHHHHHHH
Confidence 5899999999986 78999999999999999999987 76553 5443 2111 22 278999999765542 335
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
.+.+.|+|||+|++.
T Consensus 244 ~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 244 DIASLLKPGGYLILS 258 (295)
T ss_dssp HCHHHEEEEEEEEEE
T ss_pred HHHHhhCCCCEEEEc
Confidence 677899999999995
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=75.35 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i---- 75 (156)
|.+++++..-.+..+|++||++++++++|++|++.+ ++..+ |+++++|..+.... ...||.|+++-+.-..
T Consensus 56 G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~r--i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~ 132 (248)
T COG4123 56 GALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEER--IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRL 132 (248)
T ss_pred CHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhc--eeEehhhHHHhhhcccccccCEEEeCCCCCCCcccc
Confidence 677776555434499999999999999999999985 66444 99999998764432 3469999998764211
Q ss_pred ----------------HH----HHHhhCCCCcEEEEEec
Q psy14971 76 ----------------PK----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ----------------~~----~l~~~L~pGGrLv~~~~ 94 (156)
.+ .....|||||++.++..
T Consensus 133 ~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 133 NENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 01 23578999999999865
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=71.85 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=65.6
Q ss_pred chHHH-HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--
Q psy14971 2 GDLNV-IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~-la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~-- 76 (156)
|.++. ++... .|.++|+++|++++|++.|+++++. .+.. + ++++.+|..+... ..+|+|++..+.+.++
T Consensus 65 G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~ 138 (239)
T TIGR00740 65 GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIP---VEILCNDIRHVEI--KNASMVILNFTLQFLPPE 138 (239)
T ss_pred CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCC---eEEEECChhhCCC--CCCCEEeeecchhhCCHH
Confidence 55543 44443 4678999999999999999999987 3543 5 9999999876322 3589999988876653
Q ss_pred ------HHHHhhCCCCcEEEEEe
Q psy14971 77 ------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ------~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 139 ~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 139 DRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHHHHHhcCCCeEEEEee
Confidence 35678999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-07 Score=77.72 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=70.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEccCCCc-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~~~~~----- 74 (156)
|..++..+...|...++|+|+++++++.|.+++.. .+++| +.++.+|+... ....+.+|.|++..+.+.
T Consensus 134 G~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~-~gL~N---V~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrH 209 (390)
T PRK14121 134 GRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL-LNLKN---LLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPH 209 (390)
T ss_pred cHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-cCCCc---EEEEECCHHHhhhhCCCCceeEEEEeCCCCccccch
Confidence 55555444445789999999999999999999988 48889 99999998643 123578999999987652
Q ss_pred -------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
....+.+.|+|||.+.+....
T Consensus 210 RRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 210 RRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 234668999999999997653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-08 Score=66.62 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=55.5
Q ss_pred HHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC-CCchH-------
Q psy14971 7 IVGIK--GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA-CIEVP------- 76 (156)
Q Consensus 7 la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~-~~~i~------- 76 (156)
++... ++..+++++|++++|++.|+++... .+. + ++++++|+.+.....++||+|++.+. ...+.
T Consensus 15 l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~-~---~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 15 LARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGP-K---VRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp HHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTT-T---SEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHH
T ss_pred HHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCC-c---eEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHH
Confidence 34444 4458999999999999999999987 365 6 99999999773334679999999544 55443
Q ss_pred -HHHHhhCCCCc
Q psy14971 77 -KEILAQLKPGG 87 (156)
Q Consensus 77 -~~l~~~L~pGG 87 (156)
+.+.+.|+|||
T Consensus 90 l~~~~~~l~pgG 101 (101)
T PF13649_consen 90 LRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHTEEEEE
T ss_pred HHHHHHHhCCCC
Confidence 35678899987
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=78.62 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.+++ ++... +.+|+++|+++++++.|++|... .+ .+ ++++.+|........++||.|++.....+++
T Consensus 278 G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~-~~-~~---v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~ 350 (475)
T PLN02336 278 GGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG-RK-CS---VEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPA 350 (475)
T ss_pred CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc-CC-Cc---eEEEEcCcccCCCCCCCEEEEEECCcccccCCHHH
Confidence 55554 44444 46999999999999999998764 23 35 9999999876433346899999988876554
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 351 ~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 351 LFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred HHHHHHHHcCCCeEEEEEEe
Confidence 467899999999998653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-07 Score=69.67 Aligned_cols=90 Identities=21% Similarity=0.276 Sum_probs=66.2
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.. +...++..+|+++|+++.+++.|++++... +..+. ++++.+|..+.....++||+|++......++
T Consensus 63 G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~--~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~ 139 (239)
T PRK00216 63 GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-GLSGN--VEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDK 139 (239)
T ss_pred CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-ccccC--eEEEecccccCCCCCCCccEEEEecccccCCCHHH
Confidence 555543 444433689999999999999999998762 44322 8999999876443456899999887655432
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 140 ~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 140 ALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred HHHHHHHhccCCcEEEEEEe
Confidence 456789999999988643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=73.73 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------HHHHhhCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------KEILAQLKP 85 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~~l~~~L~p 85 (156)
.++|+++|+++++++.|+++... .++ ++++.+|+.+.....++||+|++..+..+++ ..+.+.|||
T Consensus 75 ~~~v~giD~s~~~~~~a~~~~~~---~~~---i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP 148 (263)
T PTZ00098 75 GAHVHGVDICEKMVNIAKLRNSD---KNK---IEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP 148 (263)
T ss_pred CCEEEEEECCHHHHHHHHHHcCc---CCc---eEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999998754 246 9999999875333347899999965543332 356799999
Q ss_pred CcEEEEEec
Q psy14971 86 GGRLVFHKG 94 (156)
Q Consensus 86 GGrLv~~~~ 94 (156)
||++++...
T Consensus 149 GG~lvi~d~ 157 (263)
T PTZ00098 149 NGILLITDY 157 (263)
T ss_pred CcEEEEEEe
Confidence 999998653
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-07 Score=73.53 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C-CCCCcCEEEEccCCCchH-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A-EEGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~-~~~~fD~I~i~~~~~~i~- 76 (156)
|+++ .+|.++++.++|+++|+++++.+...+..+. . .| |.++.+|+.... . ....||+||++.+.++-.
T Consensus 144 G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r--~N---I~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pdq~~ 217 (293)
T PTZ00146 144 GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-R--PN---IVPIIEDARYPQKYRMLVPMVDVIFADVAQPDQAR 217 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-c--CC---CEEEECCccChhhhhcccCCCCEEEEeCCCcchHH
Confidence 5555 5788999999999999999866554444333 1 47 999999986532 1 124799999999755422
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++.+
T Consensus 218 il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 218 IVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred HHHHHHHHhccCCCEEEEEE
Confidence 24567899999999954
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=71.77 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=64.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------h
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------V 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------i 75 (156)
|.+++......+..+|+++|+++++++.|++|++. ....+ ++++.+|..+... .++||.|+++.+... +
T Consensus 120 G~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~~~~---i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~ 194 (275)
T PRK09328 120 GAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GLGAR---VEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLL 194 (275)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CCCCc---EEEEEccccCcCC-CCceeEEEECCCcCCcchhhhC
Confidence 55665444444668999999999999999999983 13356 9999999876543 468999999754321 0
Q ss_pred --------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 --------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-..+.+.|+|||++++.++.
T Consensus 195 ~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 195 QPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY 240 (275)
T ss_pred CchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 11234899999999998764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-07 Score=72.78 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=63.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|..++.+... +.+|+++|+++++++.++++.+.. ++ + +++..+|...... ..+||.|++......++
T Consensus 132 G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l-~---v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~ 203 (287)
T PRK12335 132 GRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NL-N---IRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIP 203 (287)
T ss_pred CHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CC-c---eEEEEechhcccc-cCCccEEEEcchhhhCCHHHHH
Confidence 5555443333 479999999999999999999883 76 6 8999999765322 46899999988765332
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 204 ~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 204 AIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 35678999999977644
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.8e-07 Score=72.48 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=73.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.|++.+....|..+|+-+|++...++.||+|++.+ +.++ ..+...|..+...+ .||.|+++-+.+.
T Consensus 170 Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N-~~~~---~~v~~s~~~~~v~~--kfd~IisNPPfh~G~~v~~~ 243 (300)
T COG2813 170 GVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN-GVEN---TEVWASNLYEPVEG--KFDLIISNPPFHAGKAVVHS 243 (300)
T ss_pred cHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-CCCc---cEEEEecccccccc--cccEEEeCCCccCCcchhHH
Confidence 789988878888999999999999999999999986 7777 67888888776554 8999999998763
Q ss_pred ----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+-....+.|++||.|.++..
T Consensus 244 ~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 244 LAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHHHHHHHHHhhccCCEEEEEEc
Confidence 22345789999999999875
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.3e-07 Score=75.50 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=65.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~~~~fD~I~i~~~~~~------ 74 (156)
|.+++......+..+|+++|+++++++.|++|++. .+. + ++++.+|..+. .+...+||.|+++.+.-.
T Consensus 263 G~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~-~g~-r---V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l 337 (423)
T PRK14966 263 GAVAVTVALERPDAFVRASDISPPALETARKNAAD-LGA-R---VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHL 337 (423)
T ss_pred hHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCC-c---EEEEEcchhccccccCCCccEEEECCCCCCcchhhh
Confidence 66666544445678999999999999999999988 464 6 99999998653 223457999999875310
Q ss_pred h-------H------------------HHHHhhCCCCcEEEEEecc
Q psy14971 75 V-------P------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i-------~------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
. | +.+.+.|+|||++++-++.
T Consensus 338 ~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 338 LQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred cchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 0 1 1235689999999987764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=74.48 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=59.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCch----------HH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEV----------PK 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i----------~~ 77 (156)
..+|+++|+++++++.|++++.. ++ -++ ++++.+|+.+.... .++||+|+++..-+.- -+
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~-~~~~~~~d~r---v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~ 175 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPE-IAGGAYDDPR---VELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYE 175 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHH-hccccccCCc---eEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHH
Confidence 46999999999999999999875 22 134 99999998764332 4689999998754421 13
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||++++..+
T Consensus 176 ~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 176 NCKRALKEDGIFVAQSG 192 (283)
T ss_pred HHHHhcCCCcEEEEeCC
Confidence 56789999999998654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=83.76 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=68.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCCC-CCCcCEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~---- 73 (156)
+|.+++.+..-| ..+|+++|+++.+++.|++|++.+ |++ + ++++.+|+.+.+.. ..+||.|+++.+.-
T Consensus 549 tG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n-g~~~~~---v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~ 623 (702)
T PRK11783 549 TGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN-GLSGRQ---HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSK 623 (702)
T ss_pred CCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCCccc---eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCC
Confidence 477887766544 357999999999999999999986 764 5 99999998653321 35799999997631
Q ss_pred ---c----------hHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---E----------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---~----------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
. +.....+.|+|||.|++....
T Consensus 624 ~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 624 RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1 123457789999999887654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-07 Score=75.91 Aligned_cols=83 Identities=20% Similarity=0.124 Sum_probs=63.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++.++ ..+|+++|.+++|++.|+++... .+ ++++.+|+.+.....+.||+|++.......+
T Consensus 125 G~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~---i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~ 196 (340)
T PLN02490 125 GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KE---CKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 196 (340)
T ss_pred cHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cC---CeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHH
Confidence 55554 344443 47999999999999999998642 36 8899999876333356899999988776543
Q ss_pred --HHHHhhCCCCcEEEEE
Q psy14971 77 --KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~ 92 (156)
+.+.+.|+|||++++.
T Consensus 197 ~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 197 GIKEAYRVLKIGGKACLI 214 (340)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 4678999999999875
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-07 Score=70.34 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=65.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCC-CchHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAAC-IEVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~-~~i~~~ 78 (156)
.|.+++.+...+ .++|+++|++++.++.|++|++.+ +++| ++++.+|+.+.++. ..+||.||++.+. ..+.+.
T Consensus 64 sG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~-~~~~---v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~ 138 (199)
T PRK10909 64 SGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATL-KAGN---ARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEE 138 (199)
T ss_pred ccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh-CCCc---EEEEEchHHHHHhhcCCCceEEEECCCCCCChHHH
Confidence 367776443333 379999999999999999999994 8878 99999998764432 3469999999994 343332
Q ss_pred H----Hh--hCCCCcEEEEEec
Q psy14971 79 I----LA--QLKPGGRLVFHKG 94 (156)
Q Consensus 79 l----~~--~L~pGGrLv~~~~ 94 (156)
+ .+ .|+|++.+++-..
T Consensus 139 ~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 139 TINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHHHCCCcCCCcEEEEEec
Confidence 2 22 3688888887654
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=71.76 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=59.1
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|.|+.. |... .+++++|+++..++.||+++.. .++ |+++.+|..+.+|+ +.||.|++.....-+
T Consensus 55 G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~---~~~---V~~~~~dvp~~~P~-~~FDLIV~SEVlYYL~~~~~ 124 (201)
T PF05401_consen 55 GVLTERLAPRC---DRLLAVDISPRALARARERLAG---LPH---VEWIQADVPEFWPE-GRFDLIVLSEVLYYLDDAED 124 (201)
T ss_dssp SHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SS---EEEEES-TTT---S-S-EEEEEEES-GGGSSSHHH
T ss_pred cHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC---CCC---eEEEECcCCCCCCC-CCeeEEEEehHhHcCCCHHH
Confidence 555543 3332 6999999999999999999976 367 99999999886664 789999998765433
Q ss_pred ----HHHHHhhCCCCcEEEEEec
Q psy14971 76 ----PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ----~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||.||+-..
T Consensus 125 L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 125 LRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEe
Confidence 2356789999999999743
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-07 Score=71.63 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=65.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|.+++.+....|..+|+++|. +++++.|++|++. .|+.++ ++++.+|..+... +.+|.|++....+..
T Consensus 161 G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~gl~~r--v~~~~~d~~~~~~--~~~D~v~~~~~lh~~~~~~~~ 234 (306)
T TIGR02716 161 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KGVADR--MRGIAVDIYKESY--PEADAVLFCRILYSANEQLST 234 (306)
T ss_pred hHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh-CCccce--EEEEecCccCCCC--CCCCEEEeEhhhhcCChHHHH
Confidence 666664444467789999997 8999999999998 487544 9999999875222 347999987765533
Q ss_pred --HHHHHhhCCCCcEEEEEe
Q psy14971 76 --PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~~ 93 (156)
...+.+.|+|||+|++..
T Consensus 235 ~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 235 IMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 235678999999999974
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=73.53 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=66.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.|+.-.+..| +.|+++|+++++++.|+.+.... |+ + +........+.....++||+|++--.+.++|+
T Consensus 71 G~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-gv-~---i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~ 143 (243)
T COG2227 71 GILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-GV-N---IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESF 143 (243)
T ss_pred cHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-cc-c---ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHH
Confidence 55665444555 89999999999999999998874 54 3 55666665554444479999999998888873
Q ss_pred --HHHhhCCCCcEEEEEec
Q psy14971 78 --EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 --~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.+||||++++...
T Consensus 144 ~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 144 LRACAKLVKPGGILFLSTI 162 (243)
T ss_pred HHHHHHHcCCCcEEEEecc
Confidence 46889999999999744
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-07 Score=76.59 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=76.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCCCchH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACIEVP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~~i~ 76 (156)
.|.+++.+...+ .+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.... ..+||+|+++.+.....
T Consensus 308 tG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~-~~~~---v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~ 381 (443)
T PRK13168 308 LGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN-GLDN---VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA 381 (443)
T ss_pred CCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH
Confidence 366766433322 79999999999999999999984 8888 99999998654321 35799999998876555
Q ss_pred HH--HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeec
Q psy14971 77 KE--ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPL 127 (156)
Q Consensus 77 ~~--l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL 127 (156)
+. ....++|++.+++...+. .....+.......|..+.+..+..-|-
T Consensus 382 ~~~~~l~~~~~~~ivyvSCnp~----tlaRDl~~L~~~gY~l~~i~~~DmFP~ 430 (443)
T PRK13168 382 EVMQALAKLGPKRIVYVSCNPA----TLARDAGVLVEAGYRLKRAGMLDMFPH 430 (443)
T ss_pred HHHHHHHhcCCCeEEEEEeChH----HhhccHHHHhhCCcEEEEEEEeccCCC
Confidence 32 334568888777766432 122211111112266666665555443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-07 Score=72.10 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh--c-C----------------------C-CCccceEEEEccCCCCCCCCCCcCEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN--I-K----------------------Q-NRKSFKNVSVKDGSKGHAEEGPYDIIH 67 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~--~-g----------------------~-~n~~~v~~~~gD~~~~~~~~~~fD~I~ 67 (156)
..+|+|+|+++++++.|++..-.. + + + ++ |+|..+|..+..+..++||.|+
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~---V~F~~~dl~~~~~~~~~fD~I~ 208 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKER---VRFAKHNLLAESPPLGDFDLIF 208 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCc---CEEeeccCCCCCCccCCCCEEE
Confidence 579999999999999999864100 0 0 1 24 8999999987555467899999
Q ss_pred EccCCCch--------HHHHHhhCCCCcEEEEEec
Q psy14971 68 LGAACIEV--------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 68 i~~~~~~i--------~~~l~~~L~pGGrLv~~~~ 94 (156)
+......+ ...+.+.|+|||.|++-..
T Consensus 209 crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 209 CRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred echhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 97765443 2357889999999998554
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=75.67 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++.....-+.++|+++|+++++++.|++|++.+ ++.++ ++++.+|..+..+ ..+||.|+++.+.-.
T Consensus 149 sG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l~~~--v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~ 224 (506)
T PRK01544 149 SGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EVTDR--IQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSE 224 (506)
T ss_pred hhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CCccc--eeeeecchhhhCc-CCCccEEEECCCCCCchhhhh
Confidence 3667764333335689999999999999999999884 76433 9999999866443 357999999764210
Q ss_pred --------hH------------------HHHHhhCCCCcEEEEEec
Q psy14971 75 --------VP------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --------i~------------------~~l~~~L~pGGrLv~~~~ 94 (156)
-| +.+.+.|+|||++++-++
T Consensus 225 l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 225 MAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred cCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 01 123568999999999765
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=66.73 Aligned_cols=87 Identities=22% Similarity=0.305 Sum_probs=64.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. ++...+..++++++|+++++++.+++++.. . .+ ++++.+|..+.....++||+|++....+.++
T Consensus 51 G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--~-~~---i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~ 124 (223)
T TIGR01934 51 GDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--P-LN---IEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQK 124 (223)
T ss_pred ChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--C-CC---ceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHH
Confidence 55554 344443337999999999999999998762 2 35 8999999876433346899999987665433
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|+|||++++...
T Consensus 125 ~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 125 ALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred HHHHHHHHcCCCcEEEEEEe
Confidence 467889999999998543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=63.65 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.++...... ..+|+++|+++++++.++++++.. +..+ ..+.++.+|..+...+ ..||.|+++.+...
T Consensus 35 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~-~~~~-~~~~~~~~d~~~~~~~-~~~d~vi~n~p~~~~~~~~~~ 109 (188)
T PRK14968 35 GIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN-NIRN-NGVEVIRSDLFEPFRG-DKFDVILFNPPYLPTEEEEEW 109 (188)
T ss_pred CHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc-CCCC-cceEEEeccccccccc-cCceEEEECCCcCCCCchhhh
Confidence 5555433333 489999999999999999999873 5432 0167888998765543 37999998764321
Q ss_pred --------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 --------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 --------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|+|||.+++....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 110 DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 224567899999999887654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.1e-07 Score=70.20 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------HHHHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------PKEILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------~~~l~~~L~pGG 87 (156)
+.+|+++|++++|++.|+++... ..++.+|+........+||+|+++.+.... ...+.+.|+|||
T Consensus 64 ~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 64 GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG 134 (251)
T ss_pred CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe
Confidence 47999999999999999987532 457888986533335689999998876543 246788999999
Q ss_pred EEEEEec
Q psy14971 88 RLVFHKG 94 (156)
Q Consensus 88 rLv~~~~ 94 (156)
++++...
T Consensus 135 ~l~~~~~ 141 (251)
T PRK10258 135 VVAFTTL 141 (251)
T ss_pred EEEEEeC
Confidence 9999753
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-06 Score=69.96 Aligned_cols=84 Identities=14% Similarity=0.032 Sum_probs=62.2
Q ss_pred chHHH-HHHhcCCC--CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHH
Q psy14971 2 GDLNV-IVGIKGER--ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~--g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~ 78 (156)
|+++. ++..+... ..|+++|+++++++.|+++. .+ +++..+|+.+.....++||.|+...+ +...+.
T Consensus 97 G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~---~~~~~~d~~~lp~~~~sfD~I~~~~~-~~~~~e 166 (272)
T PRK11088 97 GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQ---VTFCVASSHRLPFADQSLDAIIRIYA-PCKAEE 166 (272)
T ss_pred CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CC---CeEEEeecccCCCcCCceeEEEEecC-CCCHHH
Confidence 55554 45454332 47999999999999997653 35 88899998764334578999998765 344567
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|||||++++....
T Consensus 167 ~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 167 LARVVKPGGIVITVTPG 183 (272)
T ss_pred HHhhccCCCEEEEEeCC
Confidence 89999999999997654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.1e-07 Score=68.35 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=64.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|.++......++..+|+++|+++++++.+++++. ++ ++++.+|..+......+||+|++....+.+
T Consensus 46 G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~---~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~ 117 (240)
T TIGR02072 46 GYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----EN---VQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQA 117 (240)
T ss_pred cHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CC---CeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHH
Confidence 5555443334567889999999999999987653 25 889999987644345689999999877543
Q ss_pred HHHHHhhCCCCcEEEEEec
Q psy14971 76 PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||++++...
T Consensus 118 l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 118 LSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHcCCCcEEEEEeC
Confidence 2467889999999998653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-07 Score=68.81 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=62.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|++++.+...+...+|+|+|++|+.++..++|++.+ ++.++ +.++.+|+.+-.+ ...||+|+++-+.. +..+..
T Consensus 113 G~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv~~~--i~~~~~D~~~~~~-~~~~drvim~lp~~~~~fl~~~ 188 (200)
T PF02475_consen 113 GPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-KVENR--IEVINGDAREFLP-EGKFDRVIMNLPESSLEFLDAA 188 (200)
T ss_dssp TTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-T-TTT--EEEEES-GGG----TT-EEEEEE--TSSGGGGHHHH
T ss_pred cHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-CCCCe--EEEEcCCHHHhcC-ccccCEEEECChHHHHHHHHHH
Confidence 788887666566689999999999999999999987 77665 9999999987555 67899999988754 344677
Q ss_pred HhhCCCCcEEE
Q psy14971 80 LAQLKPGGRLV 90 (156)
Q Consensus 80 ~~~L~pGGrLv 90 (156)
...+++||.+-
T Consensus 189 ~~~~~~~g~ih 199 (200)
T PF02475_consen 189 LSLLKEGGIIH 199 (200)
T ss_dssp HHHEEEEEEEE
T ss_pred HHHhcCCcEEE
Confidence 88899998874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=77.74 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=64.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i---- 75 (156)
|.++.......|.+.|+++|+++.|++.|+++... .+ .+ +.++++|+.+.. ...++||.|+++...+++
T Consensus 430 G~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g-~~---ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syI 504 (677)
T PRK06922 430 GVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EG-RS---WNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYI 504 (677)
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cC-CC---eEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhc
Confidence 55554333334679999999999999999999866 24 35 889999986532 234689999987654432
Q ss_pred ---------------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ---------------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ---------------~~~l~~~L~pGGrLv~~~~ 94 (156)
-..+.+.|||||++++..+
T Consensus 505 p~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 505 EYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1356789999999999754
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-07 Score=76.46 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=69.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCC----CCCcCEEEEccCCC--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACI-- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~-- 73 (156)
+|-.|+.|.+-| ..+|++||.+...++.|++|++.+ |++ .+ +.++.+|+.+-+.. ...||+|+++.+.=
T Consensus 228 TGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN-g~~~~~--~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r 303 (393)
T COG1092 228 TGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN-GLDGDR--HRFIVGDVFKWLRKAERRGEKFDLIILDPPSFAR 303 (393)
T ss_pred CcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc-CCCccc--eeeehhhHHHHHHHHHhcCCcccEEEECCccccc
Confidence 355667776655 369999999999999999999987 652 22 88999999764432 34899999997631
Q ss_pred ---c----------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 ---E----------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 ---~----------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
. +.....+.|+|||.+++..+..
T Consensus 304 ~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 304 SKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 1 1235688999999999987754
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.2e-07 Score=73.09 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=73.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|++|+..+..+. .+|+|+|++|+.++..++|++.+ ++.++ |+.++||+.+..+..+.+|+|+++.... +.-+..
T Consensus 200 Gpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN-~v~~~--v~~i~gD~rev~~~~~~aDrIim~~p~~a~~fl~~A 275 (341)
T COG2520 200 GPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLN-KVEGR--VEPILGDAREVAPELGVADRIIMGLPKSAHEFLPLA 275 (341)
T ss_pred ccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhc-Cccce--eeEEeccHHHhhhccccCCEEEeCCCCcchhhHHHH
Confidence 788887666664 33999999999999999999987 77665 8999999988666557899999998764 344566
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
.+.|++||++.+..-.
T Consensus 276 ~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 276 LELLKDGGIIHYYEFV 291 (341)
T ss_pred HHHhhcCcEEEEEecc
Confidence 7899999999997653
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=70.38 Aligned_cols=89 Identities=27% Similarity=0.350 Sum_probs=69.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--c----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--E---- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~---- 74 (156)
+|.+++......+...|+++|++++.++.|++|++.+ |+.+ +.++.+|..+... ++||.|+++.+.- +
T Consensus 121 SG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l~~---~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~ 194 (280)
T COG2890 121 SGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GLVR---VLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPEL 194 (280)
T ss_pred hHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CCcc---EEEEeeecccccC--CceeEEEeCCCCCCCccccc
Confidence 4777876666677789999999999999999999995 8766 7888888776555 3899999987531 1
Q ss_pred h-------H------------------HHHHhhCCCCcEEEEEecc
Q psy14971 75 V-------P------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i-------~------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
. | ..+.+.|+|||.+++-++.
T Consensus 195 ~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 195 LPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred ChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 1 1 1346789999999998874
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-07 Score=74.49 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=71.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i---- 75 (156)
|..+.+|+++...|.|++.|+++..++..++|+++ +|..| +.+...|+....+ ....||+|+++++|+..
T Consensus 98 gKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r-~g~~~---v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~ 173 (283)
T PF01189_consen 98 GKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR-LGVFN---VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIR 173 (283)
T ss_dssp HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH-TT-SS---EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTT
T ss_pred CceeeeeecccchhHHHHhccCHHHHHHHHHHHHh-cCCce---EEEEeeccccccccccccccchhhcCCCccchhhhh
Confidence 55678899998889999999999999999999999 69989 9999888765422 22359999999998742
Q ss_pred --H----------------------HHHHhhC----CCCcEEEEEec
Q psy14971 76 --P----------------------KEILAQL----KPGGRLVFHKG 94 (156)
Q Consensus 76 --~----------------------~~l~~~L----~pGGrLv~~~~ 94 (156)
| +...+.| ||||+||..++
T Consensus 174 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 174 RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 1 1346788 99999999987
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.2e-07 Score=71.15 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=61.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|-+++ +|+.-| .+|+++.++++.++.|++++++ .|+.++ +++..+|..+ ++ .+||+|++-.+..++.
T Consensus 74 G~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~-~gl~~~--v~v~~~D~~~-~~--~~fD~IvSi~~~Ehvg~~~~ 145 (273)
T PF02353_consen 74 GGLAIYAAERYG--CHVTGITLSEEQAEYARERIRE-AGLEDR--VEVRLQDYRD-LP--GKFDRIVSIEMFEHVGRKNY 145 (273)
T ss_dssp SHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-STSSST--EEEEES-GGG------S-SEEEEESEGGGTCGGGH
T ss_pred cHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHh-cCCCCc--eEEEEeeccc-cC--CCCCEEEEEechhhcChhHH
Confidence 55554 344444 7999999999999999999998 588665 9999999654 23 3899999988877652
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 146 ~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 146 PAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp HHHHHHHHHHSETTEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEec
Confidence 356789999999998643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=70.76 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=58.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-cCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch----------HHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-IKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV----------PKE 78 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i----------~~~ 78 (156)
..+|+.+|+|+++++.|++.+... .++ ++ ++++.+|+.+-... .+.||+|+++...+.- -+.
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpR---v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~ 191 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPR---VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFES 191 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCc---eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHH
Confidence 478999999999999999998652 012 34 99999998653322 3579999999866432 235
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+|||+++...+
T Consensus 192 ~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 192 VARALRPGGVVCTQAE 207 (308)
T ss_pred HHHhcCCCcEEEECcC
Confidence 6789999999987543
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.5e-06 Score=71.81 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=73.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc--hH-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE--VP- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~--i~- 76 (156)
|..+.+|.++...|.|+|.|.+...+...++|+.+ +|++| -.+...|+.+.... .+.||+|+++|+|+. +.
T Consensus 254 GKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r-lGv~n---tiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~ 329 (460)
T KOG1122|consen 254 GKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR-LGVTN---TIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVIS 329 (460)
T ss_pred chHHHHHHHHcCCceEEecccchHHHHHHHHHHHH-hCCCc---eEEEccCcccccccccCcccceeeecCCCCCCcccc
Confidence 67789999999999999999999999999999999 69999 78888888752111 237999999999975 21
Q ss_pred -------------------------HHHHhhCCCCcEEEEEec
Q psy14971 77 -------------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -------------------------~~l~~~L~pGGrLv~~~~ 94 (156)
....+.+++||.||..++
T Consensus 330 K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 330 KDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 123578999999999876
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=69.93 Aligned_cols=86 Identities=19% Similarity=0.149 Sum_probs=61.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
.|+++......++ ..|+++|.++.++..++...+. .+. .+ +.++.+|..+. +....||.|++.+...++.
T Consensus 133 ~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~-~~~~~~---i~~~~~d~e~l-p~~~~FD~V~s~~vl~H~~dp~ 206 (322)
T PRK15068 133 NGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKL-LGNDQR---AHLLPLGIEQL-PALKAFDTVFSMGVLYHRRSPL 206 (322)
T ss_pred CcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHh-cCCCCC---eEEEeCCHHHC-CCcCCcCEEEECChhhccCCHH
Confidence 3666654333354 4799999999999766544332 222 36 99999998653 3357899999988776543
Q ss_pred ---HHHHhhCCCCcEEEEE
Q psy14971 77 ---KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~ 92 (156)
..+.+.|+|||++++.
T Consensus 207 ~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 207 DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 4678999999999985
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-06 Score=69.79 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=59.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|+++..+...++ ..|+++|.++.|+..++..-+. .+ ..+ +.+..++..+. +....||.|++.+...+++
T Consensus 133 G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~-~~~~~~---v~~~~~~ie~l-p~~~~FD~V~s~gvL~H~~dp~~ 206 (314)
T TIGR00452 133 GYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKL-LDNDKR---AILEPLGIEQL-HELYAFDTVFSMGVLYHRKSPLE 206 (314)
T ss_pred cHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHH-hccCCC---eEEEECCHHHC-CCCCCcCEEEEcchhhccCCHHH
Confidence 666544333444 5899999999999876543322 12 234 78888876553 3345799999998876553
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||+||+..
T Consensus 207 ~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 207 HLKQLKHQLVIKGELVLET 225 (314)
T ss_pred HHHHHHHhcCCCCEEEEEE
Confidence 46789999999999853
|
Known examples to date are restricted to the proteobacteria. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=71.10 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=68.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
|-+.+.|.++| ++|+|.|++..|++-|+.|++. ++++. ..+..+ |+.........+|+|.++.+.-.
T Consensus 209 GgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~-y~i~~---~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~ 282 (347)
T COG1041 209 GGILIEAGLMG--ARVIGSDIDERMVRGAKINLEY-YGIED---YPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKG 282 (347)
T ss_pred cHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhh-hCcCc---eeEEEecccccCCCCCCccceEEecCCCCccccccc
Confidence 55556688887 8999999999999999999999 68877 666666 98764333336999999976421
Q ss_pred ---------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ---------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ---------i~~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.+.|++||++|++..
T Consensus 283 ~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 283 EGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 12456899999999999876
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=69.95 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc----------hHHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE----------VPKEI 79 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~----------i~~~l 79 (156)
..+|+++|+++++++.|++++... +...+ ++++.+|+.+.+.. ..+||+|+++...+. .-+.+
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~---v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~ 172 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPR---VDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELL 172 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCc---eEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHH
Confidence 478999999999999999998652 11234 88999998653322 468999999886332 12356
Q ss_pred HhhCCCCcEEEEEec
Q psy14971 80 LAQLKPGGRLVFHKG 94 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~ 94 (156)
.+.|+|||++++...
T Consensus 173 ~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 173 KKALNEDGIFVAQSE 187 (270)
T ss_pred HHHhCCCcEEEEcCC
Confidence 789999999999744
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-07 Score=72.86 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=61.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCC---CCCCcCEEEEccCCC---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACI--- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~--- 73 (156)
|-+++.|.. +...+|++||.+...++.|++|++.+ |+ ++ ++++.+|+.+-+. ..++||.|+++.+.-
T Consensus 135 Ggfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lN-g~~~~~---~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~ 209 (286)
T PF10672_consen 135 GGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALN-GLDLDR---HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKS 209 (286)
T ss_dssp THHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHT-T-CCTC---EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESS
T ss_pred CHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCccc---eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 556666655 43468999999999999999999986 65 35 9999999865332 246899999998641
Q ss_pred --ch-------HHHHHhhCCCCcEEEEEeccC
Q psy14971 74 --EV-------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 --~i-------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+ -..+++.|+|||.|++.....
T Consensus 210 ~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 210 KFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp TCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 11 234678999999999877643
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=72.36 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHH--Hh---hh-cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc-----------
Q psy14971 13 ERALVLILNHYMKVKSKNQNN--KK---LN-IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE----------- 74 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~--l~---~~-~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~----------- 74 (156)
+..+|+++|+|+++++.|++. +. +. +.-++ ++++.+|+.+-+.. ...||+|+++..-+.
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpR---V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~E 249 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNR---VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSE 249 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCc---eEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHH
Confidence 457999999999999999972 22 10 12234 99999999764332 457999999975431
Q ss_pred hHHHHHhhCCCCcEEEEEec
Q psy14971 75 VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-..+.+.|+|||++++-..
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHHHHhcCCCcEEEEecC
Confidence 11356789999999988654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.4e-06 Score=53.80 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=58.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc---hH----HHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE---VP----KEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~---i~----~~l~~~L~ 84 (156)
+..+++++|.+++.++.++++... .+..+ ++++.+|..+... ...+||.|+++..... .+ ..+.+.|+
T Consensus 20 ~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~ 95 (107)
T cd02440 20 PGARVTGVDISPVALELARKAAAA-LLADN---VEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLK 95 (107)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhc-ccccc---eEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcC
Confidence 568999999999999999965544 24456 8999999876543 3567999999998754 22 35678899
Q ss_pred CCcEEEEE
Q psy14971 85 PGGRLVFH 92 (156)
Q Consensus 85 pGGrLv~~ 92 (156)
+||++++.
T Consensus 96 ~~g~~~~~ 103 (107)
T cd02440 96 PGGVLVLT 103 (107)
T ss_pred CCCEEEEE
Confidence 99999874
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=69.57 Aligned_cols=115 Identities=11% Similarity=0.017 Sum_probs=74.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchHHH--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVPKE-- 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~~~-- 78 (156)
|.+++.+.. ...+|+++|+++++++.|++|++.+ +++| ++++.+|+.+... ....||.|+++.+...+...
T Consensus 185 G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~-~l~~---v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~ 258 (315)
T PRK03522 185 GGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAEL-GLTN---VQFQALDSTQFATAQGEVPDLVLVNPPRRGIGKELC 258 (315)
T ss_pred CHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHH
Confidence 666654433 3479999999999999999999984 8878 9999999865332 23469999999887655443
Q ss_pred -HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecC
Q psy14971 79 -ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLG 128 (156)
Q Consensus 79 -l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~ 128 (156)
+...++|++.+++.+.+.. ....+... . .|+.+.+..+..-|-+
T Consensus 259 ~~l~~~~~~~ivyvsc~p~t----~~rd~~~l-~-~y~~~~~~~~DmFP~T 303 (315)
T PRK03522 259 DYLSQMAPRFILYSSCNAQT----MAKDLAHL-P-GYRIERVQLFDMFPHT 303 (315)
T ss_pred HHHHHcCCCeEEEEECCccc----chhHHhhc-c-CcEEEEEEEeccCCCC
Confidence 3445677665555444321 11122122 2 3666666555444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.4e-06 Score=74.43 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred CEEEEEeCCHHHHHHHHHH--Hhhh----cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH-----------
Q psy14971 15 ALVLILNHYMKVKSKNQNN--KKLN----IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP----------- 76 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~--l~~~----~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~----------- 76 (156)
.+|+.+|+|+++++.|+++ +... +.-++ ++++.+|+.+.... .++||.|+++...+..+
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dpr---v~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPR---VTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCc---eEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 7999999999999999994 3321 11134 99999998763322 36899999997654322
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|||||++++...
T Consensus 399 ~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 399 RLLKRRLAPDGLLVVQST 416 (521)
T ss_pred HHHHHhcCCCeEEEEecC
Confidence 356789999999998654
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.9e-06 Score=65.82 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=67.8
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCC-CCCC-CCCcCEEEEccCCCc--
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSK-GHAE-EGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~-~~~~-~~~fD~I~i~~~~~~-- 74 (156)
.|.++ .+++.++|.|++++.|.+++.++.|++.++.+ |+ +| +++.+-|.-. +... ...+|+||++.+.+.
T Consensus 116 SGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-gi~~~---vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~A 191 (314)
T KOG2915|consen 116 SGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-GIGDN---VTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEA 191 (314)
T ss_pred cchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-CCCcc---eEEEEeecccCCccccccccceEEEcCCChhhh
Confidence 36677 47899999999999999999999999999996 76 46 9999988643 3332 467999999998874
Q ss_pred hHHHHHhhCCCCc-EEEEE
Q psy14971 75 VPKEILAQLKPGG-RLVFH 92 (156)
Q Consensus 75 i~~~l~~~L~pGG-rLv~~ 92 (156)
+|.. ...||.+| ||+..
T Consensus 192 iPha-~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 192 IPHA-AKILKDEGGRLCSF 209 (314)
T ss_pred hhhh-HHHhhhcCceEEec
Confidence 4544 44777755 77764
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.7e-06 Score=70.03 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=66.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
.|.+++.+....+..+|+++|++++.++.+++|++.+ ++++ +++..+|+.........||.|+++..-. .+-+.
T Consensus 68 sG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-~~~~---~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~~~~l~~ 143 (382)
T PRK04338 68 SGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-GLEN---EKVFNKDANALLHEERKFDVVDIDPFGSPAPFLDS 143 (382)
T ss_pred ccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc---eEEEhhhHHHHHhhcCCCCEEEECCCCCcHHHHHH
Confidence 3667775443323468999999999999999999986 8877 8899999865433235699999986421 22244
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
....+++||.|.+...
T Consensus 144 al~~~~~~gilyvSAt 159 (382)
T PRK04338 144 AIRSVKRGGLLCVTAT 159 (382)
T ss_pred HHHHhcCCCEEEEEec
Confidence 4677899999999744
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.5e-07 Score=70.76 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i-- 75 (156)
||.|+-|..-|. .+|+++|.||..++.|.-|=-.- ++ .+ ++++.||+.+...+ +.+||+|+-+.+.-..
T Consensus 146 GYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~---i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~Ag 220 (287)
T COG2521 146 GYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIA---IKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAG 220 (287)
T ss_pred cHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccc---cEEecccHHHHHhcCCccccceEeeCCCccchhh
Confidence 788877766652 49999999999999998774221 22 24 89999999875543 5789999998764221
Q ss_pred ---H----HHHHhhCCCCcEEEEEeccCC
Q psy14971 76 ---P----KEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 76 ---~----~~l~~~L~pGGrLv~~~~~~~ 97 (156)
. .++.+.|||||+|+=.+++++
T Consensus 221 eLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 221 ELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred hHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 1 467899999999999998764
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.9e-06 Score=69.41 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=58.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc------------hH
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE------------VP 76 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~------------i~ 76 (156)
+..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+..-+.. ...||+|+++..-+. .-
T Consensus 126 ~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dpr---v~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~ 202 (336)
T PLN02823 126 TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKR---LELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFY 202 (336)
T ss_pred CCCeEEEEECCHHHHHHHHHhcccccccccCCc---eEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHH
Confidence 3478999999999999999998641 11234 99999999764433 467999999964321 11
Q ss_pred H-HHHhhCCCCcEEEEEec
Q psy14971 77 K-EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~-~l~~~L~pGGrLv~~~~ 94 (156)
+ .+.+.|+|||.+++..+
T Consensus 203 ~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 203 ERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred HHHHHHhcCCCcEEEEecc
Confidence 3 56778999999998654
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.1e-06 Score=68.63 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=60.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----- 75 (156)
|.++. +++.. +.+|+++|+++++++.|+++.+. . + +++..+|..+. .++||.|++.....++
T Consensus 179 G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~---l-~---v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~ 246 (383)
T PRK11705 179 GGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG---L-P---VEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNY 246 (383)
T ss_pred cHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc---C-e---EEEEECchhhc---CCCCCEEEEeCchhhCChHHH
Confidence 55665 34333 36999999999999999999854 2 4 88888887542 3679999987765543
Q ss_pred ---HHHHHhhCCCCcEEEEEec
Q psy14971 76 ---PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ---~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|||||++++...
T Consensus 247 ~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 247 RTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHHHHHcCCCcEEEEEEc
Confidence 2356789999999999654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=65.23 Aligned_cols=86 Identities=22% Similarity=0.217 Sum_probs=66.6
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---- 75 (156)
|-+++- |+.. +.+|+|+++|++..+.|+++++. .|++ + |+++..|-.+. .++||+|++-++.+++
T Consensus 84 G~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~-~gl~~~---v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~ 154 (283)
T COG2230 84 GGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAA-RGLEDN---VEVRLQDYRDF---EEPFDRIVSVGMFEHVGKEN 154 (283)
T ss_pred hHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHH-cCCCcc---cEEEecccccc---ccccceeeehhhHHHhCccc
Confidence 455553 4443 48999999999999999999998 5987 6 99999885542 2459999998876643
Q ss_pred -H---HHHHhhCCCCcEEEEEeccC
Q psy14971 76 -P---KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 -~---~~l~~~L~pGGrLv~~~~~~ 96 (156)
+ ..+.+.|+|||++++...+.
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecC
Confidence 3 35678999999999987543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.4e-06 Score=69.91 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=62.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++.+... ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.++ ....||+|+++.+...+..
T Consensus 304 G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~-~~~n---v~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~ 377 (431)
T TIGR00479 304 GTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELN-GIAN---VEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAA 377 (431)
T ss_pred CHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHh-CCCc---eEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCH
Confidence 6666543332 368999999999999999999985 8888 9999999865322 1346999999988655322
Q ss_pred H---HHhhCCCCcEEEEEec
Q psy14971 78 E---ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~---l~~~L~pGGrLv~~~~ 94 (156)
. ....|+|++.+++...
T Consensus 378 ~~l~~l~~l~~~~ivyvsc~ 397 (431)
T TIGR00479 378 EVLRTIIELKPERIVYVSCN 397 (431)
T ss_pred HHHHHHHhcCCCEEEEEcCC
Confidence 2 2345889876666443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.9e-06 Score=68.10 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=64.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchHHH--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVPKE-- 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~~-- 78 (156)
|.+++.+. ....+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.... ..+||.|+++-+...+...
T Consensus 245 G~~~l~la--~~~~~v~~vE~~~~av~~a~~N~~~~-~~~~---~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l 318 (374)
T TIGR02085 245 GGFGLHCA--GPDTQLTGIEIESEAIACAQQSAQML-GLDN---LSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELC 318 (374)
T ss_pred cHHHHHHh--hcCCeEEEEECCHHHHHHHHHHHHHc-CCCc---EEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHH
Confidence 55665443 33479999999999999999999984 8888 99999998653322 2469999999887654432
Q ss_pred -HHhhCCCCcEEEEEecc
Q psy14971 79 -ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 -l~~~L~pGGrLv~~~~~ 95 (156)
....++|++.+++...+
T Consensus 319 ~~l~~~~p~~ivyvsc~p 336 (374)
T TIGR02085 319 DYLSQMAPKFILYSSCNA 336 (374)
T ss_pred HHHHhcCCCeEEEEEeCH
Confidence 23467888877776643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=62.38 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=56.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--------CCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~ 72 (156)
|.++. +++..++.++|+++|+++ | . ...+ ++++++|+.+.. ...++||.|+++.+.
T Consensus 63 G~~t~~l~~~~~~~~~V~aVDi~~-~--------~---~~~~---v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 63 GGWSQYAVTQIGDKGRVIACDILP-M--------D---PIVG---VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAP 127 (209)
T ss_pred CHHHHHHHHHcCCCceEEEEeccc-c--------c---CCCC---cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCC
Confidence 56664 667778889999999998 1 1 2356 999999987631 224689999998753
Q ss_pred Cc-----------------hHHHHHhhCCCCcEEEEEec
Q psy14971 73 IE-----------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~~-----------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
.. +-..+.+.|+|||++++.+-
T Consensus 128 ~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 128 NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 21 12456789999999999543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=61.35 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=63.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i----- 75 (156)
|.++......+ .+|+++|.++.+++.+++++... +..+ +++..+|+.+.... ..+||.|++......+
T Consensus 57 G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~ 130 (224)
T TIGR01983 57 GLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD-PLLK---IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQA 130 (224)
T ss_pred CHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHH
Confidence 44554332333 57999999999999999999873 6556 89999887653322 3689999998655433
Q ss_pred -HHHHHhhCCCCcEEEEEec
Q psy14971 76 -PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||.+++...
T Consensus 131 ~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 131 FIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHHHHHHhcCCCcEEEEEec
Confidence 2456789999999987653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=74.51 Aligned_cols=66 Identities=17% Similarity=-0.044 Sum_probs=51.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC----------------CCccceEEEEccCCCCCCC-CCCcC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ----------------NRKSFKNVSVKDGSKGHAE-EGPYD 64 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~----------------~n~~~v~~~~gD~~~~~~~-~~~fD 64 (156)
|.+++.+....+.++|+++|+++++++.|++|++.+ ++ ++ ++++++|..+.... ..+||
T Consensus 130 G~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n-~l~~~~~~~~~~~~~~l~~r---V~f~~sDl~~~~~~~~~~fD 205 (1082)
T PLN02672 130 GWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN-ALDDDGLPVYDGEGKTLLDR---VEFYESDLLGYCRDNNIELD 205 (1082)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-Cccccccccccccccccccc---EEEEECchhhhccccCCceE
Confidence 677776555556689999999999999999999873 32 24 99999998876543 23799
Q ss_pred EEEEccC
Q psy14971 65 IIHLGAA 71 (156)
Q Consensus 65 ~I~i~~~ 71 (156)
+|+++-+
T Consensus 206 lIVSNPP 212 (1082)
T PLN02672 206 RIVGCIP 212 (1082)
T ss_pred EEEECCC
Confidence 9999875
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=63.57 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=53.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCC-----CcCEEEEccCCCchH--------HHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEG-----PYDIIHLGAACIEVP--------KEIL 80 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~-----~fD~I~i~~~~~~i~--------~~l~ 80 (156)
..+|+++|++++|++.|++++...+..-+ +.+++||..+..+-.. +...++++....+++ ..+.
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~---v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~ 164 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQLE---VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIR 164 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCCce---EEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHH
Confidence 47899999999999999999876211124 7778999876432222 233455555555443 3567
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
+.|+|||++++.+.
T Consensus 165 ~~L~pgG~~lig~d 178 (301)
T TIGR03438 165 QLLGPGGGLLIGVD 178 (301)
T ss_pred HhcCCCCEEEEecc
Confidence 89999999998653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-05 Score=62.65 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceE-EEEccCCCCC-CCCCCcCEEEEccCC---Cc---hHHHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKN-VSVKDGSKGH-AEEGPYDIIHLGAAC---IE---VPKEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~-~~~gD~~~~~-~~~~~fD~I~i~~~~---~~---i~~~l~~~L~ 84 (156)
|..+|+.+|.++.|-+.|.+.++.. ...+ +. |+++++.... ..+++||.|+.+-.. .+ ...++.+.|+
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~-k~~~---~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEK-KPLQ---VERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR 173 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhc-cCcc---eEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC
Confidence 5679999999999999999999874 4455 66 9999987643 146899999988643 22 2246789999
Q ss_pred CCcEEEEEec
Q psy14971 85 PGGRLVFHKG 94 (156)
Q Consensus 85 pGGrLv~~~~ 94 (156)
|||++++...
T Consensus 174 pgG~iifiEH 183 (252)
T KOG4300|consen 174 PGGRIIFIEH 183 (252)
T ss_pred CCcEEEEEec
Confidence 9999999753
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-05 Score=60.19 Aligned_cols=77 Identities=23% Similarity=0.195 Sum_probs=53.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-----------cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-----------IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-----------~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~----- 76 (156)
+-.|+|+|+++..++.+.+..... ....+ |+++++|..+.... .++||.|+-.+...++|
T Consensus 56 G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~ 132 (213)
T TIGR03840 56 GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN---IEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQ 132 (213)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc---eEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHH
Confidence 468999999999999864422100 01124 99999999774332 45799998877655554
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 133 ~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 133 RYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred HHHHHHHHHcCCCCeEEEEE
Confidence 35789999999866543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=64.81 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=55.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-------chHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------~i~~~l 79 (156)
++...+++..|+.+|++++..+.|++-++...|+.++ ++|+++|+.+...+...||.|++.+-+. ++-+.+
T Consensus 139 la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~--m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l 216 (276)
T PF03059_consen 139 LAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKR--MSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHL 216 (276)
T ss_dssp HH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SS--EEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHH
T ss_pred HHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCC--eEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHH
Confidence 4555666789999999999999999887721355444 9999999876444457899999988664 355678
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.++||.+|++=.
T Consensus 217 ~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 217 AKHMAPGARLVVRS 230 (276)
T ss_dssp HHHS-TTSEEEEEE
T ss_pred HhhCCCCcEEEEec
Confidence 88899999988853
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=67.74 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=60.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CC-CCCCcCEEEEccCCCchH--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HA-EEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~-~~~~fD~I~i~~~~~~i~-- 76 (156)
|.++. ++.. ..+|+++|+++++++.+++... ..++ ++++++|+... .+ ...+||.|++..+...++
T Consensus 49 G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~---~~~~---i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~ 119 (475)
T PLN02336 49 GRFTGELAKK---AGQVIALDFIESVIKKNESING---HYKN---VKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDK 119 (475)
T ss_pred CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc---cCCc---eEEEEecccccccCCCCCCEEEEehhhhHHhCCHH
Confidence 55554 3333 3699999999999998865332 2356 99999998632 22 246899999998876543
Q ss_pred ------HHHHhhCCCCcEEEEEe
Q psy14971 77 ------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ------~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 120 ~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 120 EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEe
Confidence 34678899999998853
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-06 Score=65.99 Aligned_cols=88 Identities=22% Similarity=0.191 Sum_probs=59.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCcc---ceEEEEccCCCCCCCCCCcCEEEEccCCCch--H
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKS---FKNVSVKDGSKGHAEEGPYDIIHLGAACIEV--P 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~---~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i--~ 76 (156)
|-|+.-...+| +.|+|+|.++++++.|+++.... -..+.. .+++.+.|+.. . .++||+|++.-.++++ |
T Consensus 101 GLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~-~--~~~fDaVvcsevleHV~dp 174 (282)
T KOG1270|consen 101 GLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG-L--TGKFDAVVCSEVLEHVKDP 174 (282)
T ss_pred cccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh-c--ccccceeeeHHHHHHHhCH
Confidence 44554223334 89999999999999999994321 111100 04555555543 2 3569999999988877 4
Q ss_pred H----HHHhhCCCCcEEEEEecc
Q psy14971 77 K----EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ~----~l~~~L~pGGrLv~~~~~ 95 (156)
. .+.+.|||||+|++..-.
T Consensus 175 ~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 175 QEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHHHHHhCCCCceEeeehh
Confidence 3 568999999999998653
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=59.55 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
+|.|++-|.++|+ .+|+++|+|+++++.+++|..+ ++ .+ |.|+.+|..+. .++||.+++|.+.
T Consensus 56 TG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~-g~---v~f~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 56 TGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LL-GD---VEFVVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred cCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hC-Cc---eEEEEcchhhc---CCccceEEECCCC
Confidence 4889999999997 8999999999999999999998 34 46 99999998763 3578988888764
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=59.47 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=66.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i--- 75 (156)
|...+-.+...|+..++|+|++...+..|.+++.+ .++.| +.++.+|+...+ ...++.|.|++..+-+..
T Consensus 29 G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-~~l~N---v~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~r 104 (195)
T PF02390_consen 29 GEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-RGLKN---VRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKR 104 (195)
T ss_dssp SHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-HTTSS---EEEEES-CTTHHHHHSTTTSEEEEEEES-----SGG
T ss_pred CHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-hcccc---eEEEEccHHHHHhhcccCCchheEEEeCCCCCcccc
Confidence 44444333456789999999999999999999999 49999 999999998733 235789999999876521
Q ss_pred -----------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 -----------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -----------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||+|.+....
T Consensus 105 H~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 105 HHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp GGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred hhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 13567899999999987653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.5e-05 Score=59.81 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCchH------HHHHhhCCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEVP------KEILAQLKPG 86 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i~------~~l~~~L~pG 86 (156)
..+|+++|.++++++.|++++.. .+. + ++++.+|..+.. ...+.||+|++......++ ..+.+.|+||
T Consensus 70 ~~~v~~iD~s~~~~~~a~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 70 GADVTGIDASEENIEVARLHALE-SGL-K---IDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHH-cCC-c---eEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 36899999999999999999877 354 5 888888876532 1346899999977665433 4567899999
Q ss_pred cEEEEEec
Q psy14971 87 GRLVFHKG 94 (156)
Q Consensus 87 GrLv~~~~ 94 (156)
|++++...
T Consensus 145 G~l~v~~~ 152 (233)
T PRK05134 145 GLVFFSTL 152 (233)
T ss_pred cEEEEEec
Confidence 99998653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.1e-05 Score=59.69 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=47.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++. ++... +..+|+++|+++++++.|++++. + ++++.+|+.+.. ..+.||.|++.....+++
T Consensus 55 G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~------~---~~~~~~d~~~~~-~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 55 GMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP------N---INIIQGSLFDPF-KDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC------C---CcEEEeeccCCC-CCCCEEEEEECChhhhCC
Confidence 55554 44443 45899999999999999997643 3 667889987733 357899999999887664
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=63.96 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=30.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhh
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKL 36 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~ 36 (156)
.|+|++ ||...++ ..|+++|||+-+++.|+++++.
T Consensus 69 sG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 69 SGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 488886 6888886 7799999999999999999875
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=66.76 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=62.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----------------CCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----------------EGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----------------~~~fD 64 (156)
.|.+++....- ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.+.. ...||
T Consensus 217 ~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~-~~~~---v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D 290 (362)
T PRK05031 217 NGNFTLALARN--FRRVLATEISKPSVAAAQYNIAAN-GIDN---VQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFS 290 (362)
T ss_pred ccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHh-CCCc---EEEEECCHHHHHHHHhhcccccccccccccCCCCC
Confidence 36667632221 369999999999999999999985 8888 99999998653211 12589
Q ss_pred EEEEccCCCchHHHHHhhC-CCCcEEEEEec
Q psy14971 65 IIHLGAACIEVPKEILAQL-KPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l~~~L-~pGGrLv~~~~ 94 (156)
.|++|.+...+.+.+.+.| ++++.+++...
T Consensus 291 ~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~ 321 (362)
T PRK05031 291 TIFVDPPRAGLDDETLKLVQAYERILYISCN 321 (362)
T ss_pred EEEECCCCCCCcHHHHHHHHccCCEEEEEeC
Confidence 9999999877655554443 56665555444
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=62.82 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=62.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhc-CC-CCccceEEEEccCCCCCCCC-CCcCEEEEccCCCch----------HHH
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNI-KQ-NRKSFKNVSVKDGSKGHAEE-GPYDIIHLGAACIEV----------PKE 78 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~-g~-~n~~~v~~~~gD~~~~~~~~-~~fD~I~i~~~~~~i----------~~~ 78 (156)
.+-.+++.+|+|+++++.||+.+.... +. +.| ++++.+|+.+-..+. ..||+|+++..-+.= -+.
T Consensus 98 ~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpR--v~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~ 175 (282)
T COG0421 98 LPVERITMVEIDPAVIELARKYLPEPSGGADDPR--VEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEG 175 (282)
T ss_pred CCcceEEEEEcCHHHHHHHHHhccCcccccCCCc--eEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHH
Confidence 345899999999999999999987631 11 222 999999998755543 369999999865521 246
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+++|.+++..+
T Consensus 176 ~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 176 CRRALKEDGIFVAQAG 191 (282)
T ss_pred HHHhcCCCcEEEEecC
Confidence 7899999999999844
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-05 Score=58.31 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=64.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---C-CCCcCEEEEccCCCc--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---E-EGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~-~~~fD~I~i~~~~~~-- 74 (156)
.|.+++.|...|. .+|+++|.+++.++.+++|++.+ ++.++ ++++.+|+.+.+. . ...||.|+++.+...
T Consensus 60 sG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~-~~~~~--~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~ 135 (189)
T TIGR00095 60 SGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL-KSGEQ--AEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGA 135 (189)
T ss_pred CcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCccc--EEEEehhHHHHHHHhhccCCCceEEEECcCCCCCc
Confidence 3777777766665 58999999999999999999984 77522 9999999854321 1 234899999987642
Q ss_pred hH---HHHH--hhCCCCcEEEEEec
Q psy14971 75 VP---KEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~---~~l~--~~L~pGGrLv~~~~ 94 (156)
+. +.+. ..|+++|.+|+-..
T Consensus 136 ~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 136 LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 22 2222 35788998887654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.7e-05 Score=59.75 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=58.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHh------------hhcCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCCchH
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKK------------LNIKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~------------~~~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~~i~ 76 (156)
..+-.|+|+|+++..++.+.+... . ..-.+ |++.+||..+..+ ..++||.|+--++...+|
T Consensus 63 ~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~-~~~~~---i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alp 138 (226)
T PRK13256 63 SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKL-YKGDD---IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALP 138 (226)
T ss_pred hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccce-eccCc---eEEEEccCcCCCccccccCCcCeeeeehhHhcCC
Confidence 345689999999999999866321 1 11135 9999999987432 136899999988877766
Q ss_pred H--------HHHhhCCCCcEEEEEec
Q psy14971 77 K--------EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~--------~l~~~L~pGGrLv~~~~ 94 (156)
+ .+.+.|+|||++++..-
T Consensus 139 p~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 139 NDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4 46788999999998764
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8e-05 Score=56.78 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=66.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCC-chH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACI-EVP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~-~i~ 76 (156)
+|-|++.|.--|. .+|+.||.+.+.+...++|++. ++...+ .+++.+|+...+ ....+||.||+|.+.. .+.
T Consensus 54 SGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~-l~~~~~--~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~ 129 (187)
T COG0742 54 SGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKA-LGLEGE--ARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL 129 (187)
T ss_pred ccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHH-hCCccc--eEEEeecHHHHHHhcCCCCcccEEEeCCCCccchh
Confidence 4667776655554 7999999999999999999998 685433 899999987432 2234699999999886 222
Q ss_pred --H--HH----HhhCCCCcEEEEEec
Q psy14971 77 --K--EI----LAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~--~l----~~~L~pGGrLv~~~~ 94 (156)
. .+ ...|+|+|.+|+-..
T Consensus 130 ~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 130 DKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred hHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 1 11 256999999999765
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=8e-05 Score=57.41 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++..... ...+|+++|+++++++.|++++... +. ++ +++.++|+... + .+||+|++...+..++
T Consensus 67 G~~~~~la~--~~~~v~gvD~s~~~i~~a~~~~~~~-~~~~~---i~~~~~d~~~~-~--~~fD~ii~~~~l~~~~~~~~ 137 (219)
T TIGR02021 67 GLLSIELAK--RGAIVKAVDISEQMVQMARNRAQGR-DVAGN---VEFEVNDLLSL-C--GEFDIVVCMDVLIHYPASDM 137 (219)
T ss_pred CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhc-CCCCc---eEEEECChhhC-C--CCcCEEEEhhHHHhCCHHHH
Confidence 555543322 2469999999999999999999873 54 36 99999998653 2 6799999877665443
Q ss_pred ----HHHHhhCCCCcEEEE
Q psy14971 77 ----KEILAQLKPGGRLVF 91 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~ 91 (156)
..+.+.+++++.+.+
T Consensus 138 ~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 138 AKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHHHHHHHHHhCCCEEEEE
Confidence 234455665544433
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.8e-06 Score=64.24 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-cC--CCCccceEEEEccCCCCCCC-CC-CcCEEEEccCCCch----------HHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-IK--QNRKSFKNVSVKDGSKGHAE-EG-PYDIIHLGAACIEV----------PKE 78 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-~g--~~n~~~v~~~~gD~~~~~~~-~~-~fD~I~i~~~~~~i----------~~~ 78 (156)
..+|+.+|+|+++++.|++.+... .+ -++ ++++.+|+..-+.. .. .||.|+++..-+.- -+.
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r---~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~ 176 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPR---VRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQL 176 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTT---EEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHH
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCc---eEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHH
Confidence 479999999999999999988652 11 134 99999999653332 23 79999998875421 245
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+|||.+++...
T Consensus 177 ~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 177 CKRRLKPDGVLVLQAG 192 (246)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHhhcCCCcEEEEEcc
Confidence 6899999999999874
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.4e-06 Score=62.24 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=63.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCch-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIEV- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~i- 75 (156)
+|-+++.|.--|. .+|+.||.+++.++..++|++. ++..++ ++++.+|+...+. ...+||.||+|.+...-
T Consensus 53 SGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~-l~~~~~--~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~ 128 (183)
T PF03602_consen 53 SGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEK-LGLEDK--IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL 128 (183)
T ss_dssp TSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHH-HT-GGG--EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH
T ss_pred cCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHH-hCCCcc--eeeeccCHHHHHHhhcccCCCceEEEECCCcccch
Confidence 4667777655553 7999999999999999999999 587654 8999999754332 24789999999887532
Q ss_pred --HH---HHH--hhCCCCcEEEEEecc
Q psy14971 76 --PK---EIL--AQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --~~---~l~--~~L~pGGrLv~~~~~ 95 (156)
++ .+. ..|+++|.+|+-...
T Consensus 129 ~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 129 YYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 32 333 578899999987653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.96 E-value=8e-05 Score=55.32 Aligned_cols=83 Identities=11% Similarity=-0.040 Sum_probs=56.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---H
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---E 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---~ 78 (156)
|.++..+... .++|+++|+++.+++.+++++.. .+| ++++.+|+.+.......||.|+.+.+.....+ .
T Consensus 25 G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---~~~---v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~~~~i~~ 96 (169)
T smart00650 25 GALTEELLER--AARVTAIEIDPRLAPRLREKFAA---ADN---LTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFK 96 (169)
T ss_pred cHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---CCC---EEEEECchhcCCccccCCCEEEECCCcccHHHHHHH
Confidence 5566533222 47999999999999999999864 246 99999999875444446999999877653222 3
Q ss_pred HHhh--CCCCcEEEEE
Q psy14971 79 ILAQ--LKPGGRLVFH 92 (156)
Q Consensus 79 l~~~--L~pGGrLv~~ 92 (156)
+.+. +.++|.+++-
T Consensus 97 ~l~~~~~~~~~~l~~q 112 (169)
T smart00650 97 LLEEPPAFRDAVLMVQ 112 (169)
T ss_pred HHhcCCCcceEEEEEE
Confidence 3332 2356666554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.1e-05 Score=59.35 Aligned_cols=88 Identities=11% Similarity=-0.082 Sum_probs=60.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~ 77 (156)
|+.+.+=+.+.-..+|+-+|+|+++++.+|+.+... +.-++ ++++.. ..+ .....||+|+++...+ +.-+
T Consensus 82 GDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~-~~~--~~~~~fDVIIvDs~~~~~fy~ 155 (262)
T PRK00536 82 FDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQ-LLD--LDIKKYDLIICLQEPDIHKID 155 (262)
T ss_pred CchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeeh-hhh--ccCCcCCEEEEcCCCChHHHH
Confidence 555666555543359999999999999999977652 22233 777762 211 1135799999996543 3335
Q ss_pred HHHhhCCCCcEEEEEecc
Q psy14971 78 EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|+|||.+|.-.+.
T Consensus 156 ~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 156 GLKRMLKEDGVFISVAKH 173 (262)
T ss_pred HHHHhcCCCcEEEECCCC
Confidence 688999999999996553
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-05 Score=64.14 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=62.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----------------CCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----------------EGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----------------~~~fD 64 (156)
.|.+++....- ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+.... ...||
T Consensus 208 ~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~-~~~~---v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 281 (353)
T TIGR02143 208 NGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAAN-NIDN---VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCS 281 (353)
T ss_pred ccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc-CCCc---EEEEEcCHHHHHHHHhhccccccccccccccCCCC
Confidence 36677643222 259999999999999999999985 8888 99999998653221 11389
Q ss_pred EEEEccCCCchHHHH-HhhCCCCcEEEEEec
Q psy14971 65 IIHLGAACIEVPKEI-LAQLKPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l-~~~L~pGGrLv~~~~ 94 (156)
.|++|-+...+.+.+ ...++|++.+++.+.
T Consensus 282 ~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~ 312 (353)
T TIGR02143 282 TIFVDPPRAGLDPDTCKLVQAYERILYISCN 312 (353)
T ss_pred EEEECCCCCCCcHHHHHHHHcCCcEEEEEcC
Confidence 999999976655444 334456665555443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.5e-05 Score=58.07 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=70.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i-- 75 (156)
|...+ || ...|.--++|||+....+..|.+.+.+ .+++| +.++++||.+.+ .++++.|.|++..+-+.-
T Consensus 60 G~~l~~~A-~~nP~~nfiGiEi~~~~v~~~l~k~~~-~~l~N---lri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKk 134 (227)
T COG0220 60 GEFLVEMA-KKNPEKNFLGIEIRVPGVAKALKKIKE-LGLKN---LRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKK 134 (227)
T ss_pred CHHHHHHH-HHCCCCCEEEEEEehHHHHHHHHHHHH-cCCCc---EEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCc
Confidence 44333 44 446778999999999999999999999 59888 999999997643 345689999999986532
Q ss_pred ------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||.|.+.+..
T Consensus 135 RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 135 RHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred cccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 24678999999999998764
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.8e-05 Score=60.90 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=49.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i 75 (156)
.|.+++..... +.+|+++|++++|++.|+++.+. .+ ..+ +++..+|..+. .+.||.|++.....++
T Consensus 155 tG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~---~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 155 TGSLAIPLALE--GAIVSASDISAAMVAEAERRAKE-ALAALPPEVL---PKFEANDLESL---SGKYDTVTCLDVLIHY 225 (315)
T ss_pred CCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh-cccccccccc---eEEEEcchhhc---CCCcCEEEEcCEEEec
Confidence 36666543333 36999999999999999999876 22 235 88999886532 3679999988777666
Q ss_pred HH
Q psy14971 76 PK 77 (156)
Q Consensus 76 ~~ 77 (156)
|+
T Consensus 226 p~ 227 (315)
T PLN02585 226 PQ 227 (315)
T ss_pred CH
Confidence 53
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.8e-05 Score=62.92 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=66.8
Q ss_pred chHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC--chHH
Q psy14971 2 GDLNVIVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI--EVPK 77 (156)
Q Consensus 2 G~la~la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~--~i~~ 77 (156)
|.+++-+..- +...+|+++|++++.++.+++|++.+ +..+ ++++++|+...... ...||.|+++.--. .+-+
T Consensus 56 G~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N-~~~~---~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~~~fld 131 (374)
T TIGR00308 56 GIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN-SVEN---IEVPNEDAANVLRYRNRKFHVIDIDPFGTPAPFVD 131 (374)
T ss_pred hHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc---EEEEchhHHHHHHHhCCCCCEEEeCCCCCcHHHHH
Confidence 5566654433 22368999999999999999999985 7777 99999998764432 35699999988322 2335
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
...+.+++||.|.+...
T Consensus 132 ~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 132 SAIQASAERGLLLVTAT 148 (374)
T ss_pred HHHHhcccCCEEEEEec
Confidence 67788999999999743
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.2e-05 Score=58.46 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=58.9
Q ss_pred HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH----
Q psy14971 4 LNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 4 la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~---- 76 (156)
++.++.++++.|.|+|+|.++...+.--.-.++ . +| |-.+.+|+..+..- -+..|.||.+-+-++=.
T Consensus 88 VSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R-~N---IiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~ 161 (229)
T PF01269_consen 88 VSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--R-PN---IIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARIAA 161 (229)
T ss_dssp HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--S-TT---EEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHHHH
T ss_pred cchhhhccCCCCcEEEEEecchhHHHHHHHhcc--C-Cc---eeeeeccCCChHHhhcccccccEEEecCCChHHHHHHH
Confidence 467899999999999999999554443322222 1 47 99999999764221 25789999999877533
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
.+....||+||.+++.+.
T Consensus 162 ~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 162 LNARHFLKPGGHLIISIK 179 (229)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHhhccCCcEEEEEEe
Confidence 344568999999999864
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.9e-05 Score=56.57 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=52.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--------CCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~ 72 (156)
|.++. ++....+.++|+++|+++.+ . . .+ ++++.+|..+.. .....||+|+++++.
T Consensus 44 G~~~~~l~~~~~~~~~v~~vDis~~~---------~-~--~~---i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 44 GGWSQVAVEQVGGKGRVIAVDLQPMK---------P-I--EN---VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CHHHHHHHHHhCCCceEEEEeccccc---------c-C--CC---ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 55554 45555566899999999864 2 1 35 888888976531 123569999997642
Q ss_pred C-----------------chHHHHHhhCCCCcEEEEEec
Q psy14971 73 I-----------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~-----------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
+ .+-..+.+.|+|||++++...
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 112346789999999999543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=57.19 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=48.3
Q ss_pred chHHH-HHHh---cCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGI---KGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l---~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.++. ++.. .|+..+|+++|++++|++.|+++... .+ +++..+++.......++||+|+++...+++++
T Consensus 72 G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~---~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 72 GDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PG---VTFRQAVSDELVAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CC---CeEEEEecccccccCCCccEEEECCeeecCCh
Confidence 56553 3433 35567999999999999999988654 24 56666655432223468999999999887754
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.6e-06 Score=59.42 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=39.4
Q ss_pred chHH-HHHHhcCCCC--EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCC--c
Q psy14971 2 GDLN-VIVGIKGERA--LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACI--E 74 (156)
Q Consensus 2 G~la-~la~l~g~~g--~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~--~ 74 (156)
|..+ .+++.+.+.+ +++++|..+. .+.+++.+++. ++.++ ++++.|+..+.++. ..+||.|++++.-. .
T Consensus 8 G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~--~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~ 83 (106)
T PF13578_consen 8 GYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDR--VEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEA 83 (106)
T ss_dssp -------------------EEEESS-------------G-GG-BT--EEEEES-THHHHHHHHH--EEEEEEES---HHH
T ss_pred ccccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCe--EEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHH
Confidence 4444 3555555544 8999999996 45555555542 44332 99999998654433 36899999999743 2
Q ss_pred h---HHHHHhhCCCCcEEEEE
Q psy14971 75 V---PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 75 i---~~~l~~~L~pGGrLv~~ 92 (156)
+ -+.+.+.|+|||.+++.
T Consensus 84 ~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 84 VLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 2 24578899999999874
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=55.05 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=49.7
Q ss_pred chHHHHHHhcCCCCE---------EEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERAL---------VLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~---------V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
|-+.+.|.+.+.... +++.|+++++++.|++|++. .|+... +.+..+|+.+.....+.+|.|+++.+.
T Consensus 40 GtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~-ag~~~~--i~~~~~D~~~l~~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 40 GTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA-AGVEDY--IDFIQWDARELPLPDGSVDAIVTNPPY 116 (179)
T ss_dssp SHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-TT-CGG--EEEEE--GGGGGGTTSBSCEEEEE--S
T ss_pred CHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-cccCCc--eEEEecchhhcccccCCCCEEEECcch
Confidence 555555666665555 99999999999999999999 487654 899999988644345689999999875
Q ss_pred C
Q psy14971 73 I 73 (156)
Q Consensus 73 ~ 73 (156)
-
T Consensus 117 G 117 (179)
T PF01170_consen 117 G 117 (179)
T ss_dssp T
T ss_pred h
Confidence 3
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.5e-05 Score=55.61 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=49.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH------HHHhhCCCCcE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK------EILAQLKPGGR 88 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~------~l~~~L~pGGr 88 (156)
.+|+++|+++.+++. . + +....-+........++||.|++....+++++ .+.+.|||||+
T Consensus 45 ~~~~g~D~~~~~~~~------~-----~---~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 45 FEVTGVDISPQMIEK------R-----N---VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp SEEEEEESSHHHHHH------T-----T---SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred CEEEEEECCHHHHhh------h-----h---hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence 499999999999988 2 1 22222222232334578999999999887763 56899999999
Q ss_pred EEEEeccC
Q psy14971 89 LVFHKGLH 96 (156)
Q Consensus 89 Lv~~~~~~ 96 (156)
+++.....
T Consensus 111 l~~~~~~~ 118 (161)
T PF13489_consen 111 LVISDPNR 118 (161)
T ss_dssp EEEEEEBT
T ss_pred EEEEEcCC
Confidence 99988653
|
... |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=55.29 Aligned_cols=80 Identities=14% Similarity=0.070 Sum_probs=59.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--------------chHHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--------------EVPKEI 79 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--------------~i~~~l 79 (156)
.+..+++|.++..++.|+...++. +++|. |+|.+.|...+....+.||.|+=-+... -+-+.+
T Consensus 91 ~~~L~GvDYs~~AV~LA~niAe~~-~~~n~--I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v 167 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQNIAERD-GFSNE--IRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSV 167 (227)
T ss_pred CCCccccccCHHHHHHHHHHHHhc-CCCcc--eeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhH
Confidence 466999999999999999888884 88886 9999999987533345566555433221 123567
Q ss_pred HhhCCCCcEEEEEeccC
Q psy14971 80 LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~ 96 (156)
.+.|+|||++|+..+..
T Consensus 168 ~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 168 EKLLSPGGIFVITSCNF 184 (227)
T ss_pred hhccCCCcEEEEEecCc
Confidence 78999999999987754
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=56.23 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=51.3
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
.|.++.. ++.. +++|+++|++++|++.|+++. .++++|+......+.+||+|++..+.++++
T Consensus 62 tG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 62 KGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD------------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc------------ceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 3666643 3333 379999999999999998531 135677765433457899999999887654
Q ss_pred ---HHHHhhCCCC
Q psy14971 77 ---KEILAQLKPG 86 (156)
Q Consensus 77 ---~~l~~~L~pG 86 (156)
.++.+.|||.
T Consensus 128 ~~l~e~~RvLkp~ 140 (226)
T PRK05785 128 KVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHhcCc
Confidence 3567899993
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=54.29 Aligned_cols=73 Identities=18% Similarity=0.051 Sum_probs=53.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------HHHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------KEILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~~l~~~L~pG 86 (156)
-.|+|+|+++..++.+++..++ .++ + |+....|..+... ...||.|+++.....++ +.+.+.++||
T Consensus 53 ~~VtAvD~s~~al~~l~~~a~~-~~l-~---i~~~~~Dl~~~~~-~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 53 FDVTAVDISPVALEKLQRLAEE-EGL-D---IRTRVADLNDFDF-PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp -EEEEEESSHHHHHHHHHHHHH-TT--T---EEEEE-BGCCBS--TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHhh-cCc-e---eEEEEecchhccc-cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc
Confidence 6899999999999999887776 365 4 8899999765333 36799999876554332 3567789999
Q ss_pred cEEEEEe
Q psy14971 87 GRLVFHK 93 (156)
Q Consensus 87 GrLv~~~ 93 (156)
|.+++..
T Consensus 127 G~~li~~ 133 (192)
T PF03848_consen 127 GYNLIVT 133 (192)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9988854
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=55.43 Aligned_cols=76 Identities=18% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh-----------cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH----
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN-----------IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~-----------~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~---- 76 (156)
.+-.|+|+|+++..++.+.+..... ....+ |++.++|..+..+. .+.||.|+-.+....+|
T Consensus 58 ~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~---v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R 134 (218)
T PRK13255 58 QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE---ITIYCGDFFALTAADLADVDAVYDRAALIALPEEMR 134 (218)
T ss_pred CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCc---eEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHH
Confidence 3469999999999999875321100 01134 89999999875433 35799999777655554
Q ss_pred ----HHHHhhCCCCcEEEE
Q psy14971 77 ----KEILAQLKPGGRLVF 91 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~ 91 (156)
..+.+.|+|||++++
T Consensus 135 ~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 135 ERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred HHHHHHHHHHcCCCCeEEE
Confidence 356889999997444
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=59.29 Aligned_cols=63 Identities=6% Similarity=0.007 Sum_probs=46.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
+|.+++.+....+..+|+++|+++++++.|++++ .+ ++++.+|+.+.. ....||.|+++.+..
T Consensus 75 sGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~---v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 75 IGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PE---AEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cC---CEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 3666654433333479999999999999999864 24 789999988643 345799999988764
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00014 Score=55.33 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=69.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|+=++..+++.|..+|+-+|.....++.-++-.+. +|++| ++++++.+.+ ......||.|++-|-.+ .+-+..
T Consensus 60 GfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~-L~L~n---v~v~~~R~E~-~~~~~~fd~v~aRAv~~l~~l~~~~ 134 (184)
T PF02527_consen 60 GFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE-LGLSN---VEVINGRAEE-PEYRESFDVVTARAVAPLDKLLELA 134 (184)
T ss_dssp TTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-HT-SS---EEEEES-HHH-TTTTT-EEEEEEESSSSHHHHHHHH
T ss_pred CChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH-hCCCC---EEEEEeeecc-cccCCCccEEEeehhcCHHHHHHHH
Confidence 55667777888889999999999999999999988 69999 9999999876 33457899999977653 333556
Q ss_pred HhhCCCCcEEEEEeccC
Q psy14971 80 LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~ 96 (156)
...|++||++++.-+..
T Consensus 135 ~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 135 RPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp GGGEEEEEEEEEEESS-
T ss_pred HHhcCCCCEEEEEcCCC
Confidence 77899999999998753
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=56.57 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=56.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch----HH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----PK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----~~ 77 (156)
|||.+.+-.-+...+|+++|+++.-++.|++++++ .|+.++ |+++.||+.+.++.....|.|++.++=... -+
T Consensus 9 gyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~--i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI~~ILe 85 (205)
T PF04816_consen 9 GYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDR--IEVRLGDGLEVLKPGEDVDTIVIAGMGGELIIEILE 85 (205)
T ss_dssp THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTT--EEEEE-SGGGG--GGG---EEEEEEE-HHHHHHHHH
T ss_pred hHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCccc--EEEEECCcccccCCCCCCCEEEEecCCHHHHHHHHH
Confidence 78887665666667899999999999999999999 487665 999999998877654447999887754322 22
Q ss_pred HHHhhCCCCcEEEE
Q psy14971 78 EILAQLKPGGRLVF 91 (156)
Q Consensus 78 ~l~~~L~pGGrLv~ 91 (156)
...+.++..-+||+
T Consensus 86 ~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 86 AGPEKLSSAKRLIL 99 (205)
T ss_dssp HTGGGGTT--EEEE
T ss_pred hhHHHhccCCeEEE
Confidence 22344444445555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=61.20 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=63.0
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchHHHH---HhhCCC
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVPKEI---LAQLKP 85 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~~~l---~~~L~p 85 (156)
....+|+|+|++++.++.|++|++.+ +++| ++|+.+|+.+-.+. ...||.|++|-+.....+.+ ...++|
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n-~i~N---~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p 388 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAAN-GIDN---VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKP 388 (432)
T ss_pred ccCCEEEEEecCHHHHHHHHHHHHHc-CCCc---EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999996 9999 99999998764333 24789999999888777544 345677
Q ss_pred CcEEEEEec
Q psy14971 86 GGRLVFHKG 94 (156)
Q Consensus 86 GGrLv~~~~ 94 (156)
-.++++.+.
T Consensus 389 ~~IvYVSCN 397 (432)
T COG2265 389 KRIVYVSCN 397 (432)
T ss_pred CcEEEEeCC
Confidence 777777654
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0004 Score=53.43 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=44.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
..+|+++|+++++++.|++++.. .+. ++ +.+..+|... ..++||.|++.....+++
T Consensus 85 ~~~v~~~D~s~~~i~~a~~~~~~-~~~~~~---i~~~~~d~~~---~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 85 GAKVVASDISPQMVEEARERAPE-AGLAGN---ITFEVGDLES---LLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred CCEEEEEECCHHHHHHHHHHHHh-cCCccC---cEEEEcCchh---ccCCcCEEEEcchhhcCC
Confidence 35799999999999999999987 365 35 9999999432 246799999988775543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00034 Score=55.30 Aligned_cols=62 Identities=8% Similarity=0.000 Sum_probs=44.6
Q ss_pred chHHHH-HHhc--CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVI-VGIK--GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~l-a~l~--g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.+++. ++.+ .+..+|+++|+++.+++.|++|+. + +.++.+|..... ....||.|+++.+..
T Consensus 61 G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~---~~~~~~D~~~~~-~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 61 GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------E---ATWINADALTTE-FDTLFDMAISNPPFG 125 (241)
T ss_pred HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------C---CEEEEcchhccc-ccCCccEEEECCCCC
Confidence 555543 3332 235799999999999999998753 3 678889986532 245899999987643
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=9e-05 Score=61.65 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=54.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------------CCCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------------EEGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------------~~~~fD 64 (156)
+|-+++... ....+|+|+|+++++++.|++|++.+ +++| ++|+.+++.+... ....+|
T Consensus 207 ~G~fsl~la--~~~~~V~gvE~~~~av~~A~~Na~~N-~i~n---~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d 280 (352)
T PF05958_consen 207 VGTFSLPLA--KKAKKVIGVEIVEEAVEDARENAKLN-GIDN---VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFD 280 (352)
T ss_dssp TTCCHHHHH--CCSSEEEEEES-HHHHHHHHHHHHHT-T--S---EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTES
T ss_pred CCHHHHHHH--hhCCeEEEeeCCHHHHHHHHHHHHHc-CCCc---ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCC
Confidence 355554322 22379999999999999999999996 8899 9999987643211 012589
Q ss_pred EEEEccCCCchHHHHHhhCCCCcEEEEEeccC
Q psy14971 65 IIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+|+++.+...+.+.+.+.++.=.++|.+.+.+
T Consensus 281 ~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP 312 (352)
T PF05958_consen 281 AVILDPPRAGLDEKVIELIKKLKRIVYVSCNP 312 (352)
T ss_dssp EEEE---TT-SCHHHHHHHHHSSEEEEEES-H
T ss_pred EEEEcCCCCCchHHHHHHHhcCCeEEEEECCH
Confidence 99999988776654444332224777776654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=52.34 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=51.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCC-C----c---hH-------HH
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAAC-I----E---VP-------KE 78 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~-~----~---i~-------~~ 78 (156)
+|+|+||.++.++.++++++.. +..++ +++++.+-..... +.+++|+++.+-+. + . -+ +.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~--v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GLEDR--VTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-GSG--EEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CCCCc--EEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 6999999999999999999984 76444 9999965433111 12479999887542 1 1 12 35
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
.++.|+|||+|++.+
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 689999999999976
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.1e-05 Score=55.94 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=37.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC--C-CcCEEEEcc
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE--G-PYDIIHLGA 70 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~--~-~fD~I~i~~ 70 (156)
.+|+++|+++..++.|+.|++- +|+.++ |.+++||..+..... . .||+||++.
T Consensus 22 ~~Viaidid~~~~~~a~hNa~v-YGv~~~--I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 22 DRVIAIDIDPERLECAKHNAEV-YGVADN--IDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp -EEEEEES-HHHHHHHHHHHHH-TT-GGG--EEEEES-HHHHGGGB------SEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEeCCHHHHHhhccccccccEEEECC
Confidence 6899999999999999999999 697533 999999987654331 1 289999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=56.51 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=55.4
Q ss_pred CEEEEEeCCHHHHHHHHHHH--------------hhhc--------C-------CCCccceEEEEccCCCC-CCCCCCcC
Q psy14971 15 ALVLILNHYMKVKSKNQNNK--------------KLNI--------K-------QNRKSFKNVSVKDGSKG-HAEEGPYD 64 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l--------------~~~~--------g-------~~n~~~v~~~~gD~~~~-~~~~~~fD 64 (156)
-+|+|.|+++..++.|++.. ++.+ + +.+ .|+|...|..+. ++..+.||
T Consensus 148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~--~V~F~~~NL~~~~~~~~~~fD 225 (287)
T PRK10611 148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELAN--YVDFQQLNLLAKQWAVPGPFD 225 (287)
T ss_pred cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHc--cCEEEcccCCCCCCccCCCcc
Confidence 57999999999999999752 0101 0 112 289999998763 34357899
Q ss_pred EEEEccCCCc--------hHHHHHhhCCCCcEEEEEec
Q psy14971 65 IIHLGAACIE--------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~--------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+|++-..... +-..+.+.|+|||.|++-..
T Consensus 226 ~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 226 AIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 9999765433 33467899999999887554
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=54.76 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=62.8
Q ss_pred chHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchH--
Q psy14971 2 GDLNVIVGIKG-ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 2 G~la~la~l~g-~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~-- 76 (156)
|+-++|+.+.. .+..++++|++++.+..+.++ | +.++++|..+++. ++.+||.|+++-+...+.
T Consensus 23 GdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----G------v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P 91 (193)
T PF07021_consen 23 GDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----G------VSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRP 91 (193)
T ss_pred CchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----C------CCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHH
Confidence 55566666654 457899999999987666533 4 6689999988764 367899999999988654
Q ss_pred H-HHHhhCCCCcEEEEEecc
Q psy14971 77 K-EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ~-~l~~~L~pGGrLv~~~~~ 95 (156)
+ -+.+.|+-|.+.++.+..
T Consensus 92 ~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 92 DEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHhcCeEEEEecC
Confidence 3 356788999999988764
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=54.88 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=61.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC------Cc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC------IE 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~------~~ 74 (156)
+|.|++.|... ..+|+++|.+|..+..|++|+.-. |..| ++++.||+..-.. ..-|.|++..-- ..
T Consensus 43 sGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~-g~~n---~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~q 114 (252)
T COG4076 43 SGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP-GDVN---WEVVVGDARDYDF--ENADVVICEMLDTALIEEKQ 114 (252)
T ss_pred cchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC-CCcc---eEEEecccccccc--cccceeHHHHhhHHhhcccc
Confidence 47889887655 369999999999999999998764 7788 9999999986333 235888774421 12
Q ss_pred hH--HHHHhhCCCCcEEEE
Q psy14971 75 VP--KEILAQLKPGGRLVF 91 (156)
Q Consensus 75 i~--~~l~~~L~pGGrLv~ 91 (156)
+| ....+.|+..+.++=
T Consensus 115 VpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 115 VPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cHHHHHHHHHhhcCCcccc
Confidence 33 456677888887653
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=53.43 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=64.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEE----EccCCCCCC-CCCCcCEEEEccCCC--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVS----VKDGSKGHA-EEGPYDIIHLGAACI-- 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~----~gD~~~~~~-~~~~fD~I~i~~~~~-- 73 (156)
|.+++ +++-++ .++|+|+|.++..+..|.+|.++ +++.++ +.++ .+|..+..+ ..+++|.++++.+.-
T Consensus 160 GaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr-~~l~g~--i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~ 235 (328)
T KOG2904|consen 160 GAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQR-LKLSGR--IEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRK 235 (328)
T ss_pred cHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHH-HhhcCc--eEEEecccccccccccccccCceeEEecCCCcccc
Confidence 55554 344445 69999999999999999999999 587765 8877 455555443 247899999987531
Q ss_pred -chH-----------------------------HHHHhhCCCCcEEEEEec
Q psy14971 74 -EVP-----------------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -~i~-----------------------------~~l~~~L~pGGrLv~~~~ 94 (156)
+++ .-..+.|+|||.+.+-..
T Consensus 236 dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 236 DDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 110 123588999999999877
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00097 Score=54.48 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=58.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
||-++-+...|+ ..|+|+|-++-...+.+---+- +|.++ ..+....+.+.++..+.||.||+-+..-+..
T Consensus 127 GY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~-lg~~~---~~~~lplgvE~Lp~~~~FDtVF~MGVLYHrr~Pl~~ 201 (315)
T PF08003_consen 127 GYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHF-LGQDP---PVFELPLGVEDLPNLGAFDTVFSMGVLYHRRSPLDH 201 (315)
T ss_pred cHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHH-hCCCc---cEEEcCcchhhccccCCcCEEEEeeehhccCCHHHH
Confidence 666654444454 6899999998877664432222 45444 3344444555556577899999998875432
Q ss_pred -HHHHhhCCCCcEEEEEe
Q psy14971 77 -KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|++||.||+-.
T Consensus 202 L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 202 LKQLKDSLRPGGELVLET 219 (315)
T ss_pred HHHHHHhhCCCCEEEEEE
Confidence 45678999999999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00031 Score=51.82 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=53.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.|++.+...+ ...|+|+|++|+.++.+.+|.+. +.+ + +.++++|..+..+..+-||..+++.+..
T Consensus 60 GmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeE-fEv-q---idlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 60 GMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEE-FEV-Q---IDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred hhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHH-hhh-h---hheeeeeccchhccCCeEeeEEecCCCC
Confidence 55664444444 47899999999999999999999 466 4 7899999988777778899999998654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=53.75 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=42.0
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-ccC---CCCC-CCCCCcCEEEEccCCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-KDG---SKGH-AEEGPYDIIHLGAACI 73 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-gD~---~~~~-~~~~~fD~I~i~~~~~ 73 (156)
++.+++++|+++..++.|++|++.+-++.++ |+++. .|. ..+. .....||.|+++-+..
T Consensus 137 ~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~--I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 137 YGWRFVGSDIDPQALASAQAIISANPGLNGA--IRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhccCCcCc--EEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 4579999999999999999999873035443 88764 332 2222 1246799999998754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=51.49 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=60.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|+-+++.+|. |++++.+++ . ++ |+++.||..+.+|. +|++++..-++..++
T Consensus 112 G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~r---v~~~~gd~f~~~P~---~D~~~l~~vLh~~~d~~~~ 177 (241)
T PF00891_consen 112 GHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DR---VEFVPGDFFDPLPV---ADVYLLRHVLHDWSDEDCV 177 (241)
T ss_dssp SHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TT---EEEEES-TTTCCSS---ESEEEEESSGGGS-HHHHH
T ss_pred hHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cc---cccccccHHhhhcc---ccceeeehhhhhcchHHHH
Confidence 566655555678899999999 889998888 2 35 99999999865554 999999998886653
Q ss_pred ----HHHhhCCCC--cEEEEEec
Q psy14971 78 ----EILAQLKPG--GRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pG--GrLv~~~~ 94 (156)
.+.+.|+|| |+|++...
T Consensus 178 ~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 178 KILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCeEEEEee
Confidence 567889999 99999653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=54.07 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=47.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-CCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.++... +....+|+++|+|+++++.++++++. .+ .++ ++++.+|+.+.. ...||.|+.+.+..
T Consensus 48 G~LT~~L--l~~~~~V~avEiD~~li~~l~~~~~~-~~~~~~---v~ii~~Dal~~~--~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 48 GNLTEKL--LQLAKKVIAIEIDPRMVAELKKRFQN-SPLASK---LEVIEGDALKTE--FPYFDVCVANVPYQ 112 (294)
T ss_pred HHHHHHH--HHhCCcEEEEECCHHHHHHHHHHHHh-cCCCCc---EEEEECCHhhhc--ccccCEEEecCCcc
Confidence 5565432 22246899999999999999999987 35 356 999999997632 24689998876653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00066 Score=52.93 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhh--h---------cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKL--N---------IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~--~---------~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~----- 76 (156)
+-.|+|+|+++..++.+.+.... . ....+ |++.+||..+..+. .++||+|+=-++.-.+|
T Consensus 59 G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~---i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~ 135 (218)
T PF05724_consen 59 GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR---ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRE 135 (218)
T ss_dssp TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS---EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHH
T ss_pred CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc---eEEEEcccccCChhhcCCceEEEEecccccCCHHHHH
Confidence 46999999999999998432211 0 01234 89999999874443 35899999888776665
Q ss_pred ---HHHHhhCCCCcEE
Q psy14971 77 ---KEILAQLKPGGRL 89 (156)
Q Consensus 77 ---~~l~~~L~pGGrL 89 (156)
+.+.++|+|||++
T Consensus 136 ~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 136 RYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHHHHHHHCEEEEEEE
T ss_pred HHHHHHHHHhCCCCcE
Confidence 3567899999993
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00095 Score=55.22 Aligned_cols=86 Identities=16% Similarity=0.020 Sum_probs=64.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----h
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-----V 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-----i 75 (156)
+|.|++.|...|+ .+|+|+|-+ ++++.|++.++.+ ++.+. |+++.|...+..-+....|.|++...-.. +
T Consensus 71 tGILS~F~akAGA-~~V~aVe~S-~ia~~a~~iv~~N-~~~~i--i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsM 145 (346)
T KOG1499|consen 71 TGILSMFAAKAGA-RKVYAVEAS-SIADFARKIVKDN-GLEDV--ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESM 145 (346)
T ss_pred ccHHHHHHHHhCc-ceEEEEech-HHHHHHHHHHHhc-Cccce--EEEeecceEEEecCccceeEEeehhhhHHHHHhhh
Confidence 5899999999884 899999988 5669999999886 77665 89999998764222567999999654322 2
Q ss_pred HHHH----HhhCCCCcEEEE
Q psy14971 76 PKEI----LAQLKPGGRLVF 91 (156)
Q Consensus 76 ~~~l----~~~L~pGGrLv~ 91 (156)
.+.. =+.|+|||.++=
T Consensus 146 ldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 146 LDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhhhhhhhccCCCceEcc
Confidence 2222 257999998753
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=55.58 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------hH-------HHHHh
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-------VP-------KEILA 81 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-------i~-------~~l~~ 81 (156)
.++++|+|+.+++.|+.|.+++ |+... |+|.++|+....+...++|+|+++.+.-. +. ..+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~A-Gv~d~--I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAA-GVGDL--IEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhc-CCCce--EEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 4779999999999999999995 98654 99999999864443378999999986531 11 23446
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.++--++.|+...
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 6666667776543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00043 Score=56.41 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=51.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CC-CCCcCEEEEccCCCc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AE-EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~-~~~fD~I~i~~~~~~ 74 (156)
|+...++..+++.++|+|+|+|+++++.|++++.. .++ ++++++|..+.. +. ..++|.|+++-+++.
T Consensus 32 GhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~r---i~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvSs 102 (296)
T PRK00050 32 GHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGR---FTLVHGNFSNLKEVLAEGLGKVDGILLDLGVSS 102 (296)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCc---EEEEeCCHHHHHHHHHcCCCccCEEEECCCccc
Confidence 34446777777789999999999999999998864 246 999999986521 11 127999999987753
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0014 Score=50.37 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=48.1
Q ss_pred CEEEEEeCCHHHHHHHHHHH--------------hhhc----C--C-------CCccceEEEEccCCCCCCCCCCcCEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNK--------------KLNI----K--Q-------NRKSFKNVSVKDGSKGHAEEGPYDIIH 67 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l--------------~~~~----g--~-------~n~~~v~~~~gD~~~~~~~~~~fD~I~ 67 (156)
-+|+|.|+|+..++.|++-. ++.+ + . ++ |+|...|..+..+..++||+|+
T Consensus 65 ~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~---V~F~~~NL~~~~~~~~~fD~I~ 141 (196)
T PF01739_consen 65 FRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKM---VRFRRHNLLDPDPPFGRFDLIF 141 (196)
T ss_dssp EEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTT---EEEEE--TT-S------EEEEE
T ss_pred eEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCc---eEEEecccCCCCcccCCccEEE
Confidence 48999999999999998431 1111 1 0 23 9999999887445568899999
Q ss_pred EccCCC--------chHHHHHhhCCCCcEEEEEec
Q psy14971 68 LGAACI--------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 68 i~~~~~--------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
|-...- .+-+.+.+.|+|||.|++-..
T Consensus 142 CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 142 CRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred ecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 977653 233567899999999999654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=57.04 Aligned_cols=86 Identities=21% Similarity=0.114 Sum_probs=55.9
Q ss_pred CchHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC----C
Q psy14971 1 MGDLNVIVGIK----GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA----C 72 (156)
Q Consensus 1 ~G~la~la~l~----g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~----~ 72 (156)
.|-|+..|... +...+|+|||.++......++.++.+ +.+++ |+++.+|..+. ....+.|+|++--. .
T Consensus 197 rGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~w~~~--V~vi~~d~r~v-~lpekvDIIVSElLGsfg~ 272 (448)
T PF05185_consen 197 RGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-GWGDK--VTVIHGDMREV-ELPEKVDIIVSELLGSFGD 272 (448)
T ss_dssp TSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-TTTTT--EEEEES-TTTS-CHSS-EEEEEE---BTTBT
T ss_pred ccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-CCCCe--EEEEeCcccCC-CCCCceeEEEEeccCCccc
Confidence 36676544332 33479999999998887777776664 66444 99999999874 33358999999532 2
Q ss_pred Cc-hHH---HHHhhCCCCcEEE
Q psy14971 73 IE-VPK---EILAQLKPGGRLV 90 (156)
Q Consensus 73 ~~-i~~---~l~~~L~pGGrLv 90 (156)
.+ +|+ ...+.|||||+++
T Consensus 273 nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 273 NELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTSHHHHHHHGGGGEEEEEEEE
T ss_pred cccCHHHHHHHHhhcCCCCEEe
Confidence 23 333 3356899998764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0045 Score=55.95 Aligned_cols=79 Identities=14% Similarity=0.042 Sum_probs=58.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc-------hHH---H---H
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE-------VPK---E---I 79 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~-------i~~---~---l 79 (156)
.+++|+|+++++++.|++|+..+ |+.+. +.+..+|..+.... .+.||.|+++.+.-. +.+ . .
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~-g~~~~--i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRA-GVAEL--ITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHc-CCCcc--eEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 47999999999999999999994 88654 89999998764322 246999999976421 111 1 2
Q ss_pred HhhCCCCcEEEEEeccC
Q psy14971 80 LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~ 96 (156)
++.+.+|+++++..+..
T Consensus 334 lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 334 LKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHhCCCCeEEEEeCCH
Confidence 34445999999887643
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00031 Score=54.99 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAA 71 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~ 71 (156)
..|++||+||..+..|++|++- +|++++ |+|++||..+.... ..-+|++|.+.+
T Consensus 117 ~~VisIdiDPikIa~AkhNaei-YGI~~r--ItFI~GD~ld~~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 117 PYVIAIDIDPVKIACARHNAEV-YGVPDR--ITFICGDFLDLASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred CeEEEEeccHHHHHHHhcccee-ecCCce--eEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence 5899999999999999999999 699877 99999998653221 223678887654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0032 Score=54.86 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=68.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~~~~~i---- 75 (156)
|...+-.+...|...++|+|++...+..|.+...+ .++.| +.++.+|+... .-...++|.|++..+-+..
T Consensus 359 G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~-~~l~N---~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh 434 (506)
T PRK01544 359 GEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE-QNITN---FLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ 434 (506)
T ss_pred hHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-cCCCe---EEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC
Confidence 44444344556789999999999999999999888 48889 99998886321 1234679999999987632
Q ss_pred ----------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ----------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ----------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|+|||.+.+....
T Consensus 435 ~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 435 KKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred ccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 13678999999999987653
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=51.78 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=53.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-----cCC---CCccceEEEEccCCCCCCC-CCCcCEEEEccC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-----IKQ---NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAA 71 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-----~g~---~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~ 71 (156)
+|-.++.+...| ++|+.+|.++.+....++++++. ++. .+ ++++++|+.+.+.. ...||+||++-+
T Consensus 99 lG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~r---i~l~~~da~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 99 LGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER---LQLIHASSLTALTDITPRPQVVYLDPM 173 (250)
T ss_pred ccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhce---EEEEeCcHHHHHhhCCCCCcEEEECCC
Confidence 466777776665 67999999999999999999882 021 35 99999998764432 236999999998
Q ss_pred CCc
Q psy14971 72 CIE 74 (156)
Q Consensus 72 ~~~ 74 (156)
.++
T Consensus 174 fp~ 176 (250)
T PRK10742 174 FPH 176 (250)
T ss_pred CCC
Confidence 764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0021 Score=53.26 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=54.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cC--CCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DG--SKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~--~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+.+| ++|+++|++++-++.|++- |.+. ++.+ |. .+... ..||.|+.+.+ ..-.+
T Consensus 179 Gh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l-----GAd~-----~i~~~~~~~~~~~~--~~~d~ii~tv~-~~~~~ 243 (339)
T COG1064 179 GHMAVQYAKAMG--AEVIAITRSEEKLELAKKL-----GADH-----VINSSDSDALEAVK--EIADAIIDTVG-PATLE 243 (339)
T ss_pred HHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh-----CCcE-----EEEcCCchhhHHhH--hhCcEEEECCC-hhhHH
Confidence 45555 356676 8999999999999988854 4322 2222 21 11112 23999999999 76667
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
..++.|++||++++.=
T Consensus 244 ~~l~~l~~~G~~v~vG 259 (339)
T COG1064 244 PSLKALRRGGTLVLVG 259 (339)
T ss_pred HHHHHHhcCCEEEEEC
Confidence 8899999999999953
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=46.83 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=50.2
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc--hH---HH
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE--VP---KE 78 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~--i~---~~ 78 (156)
+.+.+.+...+|+-+|+|+.+++.-++..++ .|+ + |+.++.|...++|+ .+.||++|.+.+-.- +. ..
T Consensus 59 lA~al~~~~~~I~VvDiDeRll~fI~~~a~~-~gl-~---i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsR 133 (243)
T PF01861_consen 59 LALALTGLPKRITVVDIDERLLDFINRVAEE-EGL-P---IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSR 133 (243)
T ss_dssp HHHHHHT--SEEEEE-S-HHHHHHHHHHHHH-HT------EEEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHH
T ss_pred HHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH-cCC-c---eEEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHH
Confidence 3345667779999999999999999999998 587 5 99999999998887 488999999876542 11 23
Q ss_pred HHhhCCC-CcEEEEEeccC
Q psy14971 79 ILAQLKP-GGRLVFHKGLH 96 (156)
Q Consensus 79 l~~~L~p-GGrLv~~~~~~ 96 (156)
-.+.||. ||..++..+..
T Consensus 134 gi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 134 GIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp HHHTB-STT-EEEEEE-TT
T ss_pred HHHHhCCCCceEEEEEecC
Confidence 3567776 44666666544
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0018 Score=48.73 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=57.8
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-----CCCCCcCEEEEccCCCchH----
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-----AEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-----~~~~~fD~I~i~~~~~~i~---- 76 (156)
++++.+.+ ..++++|.+++.+..-.+... . +.++.||+...- .....||.|+++-+...+|
T Consensus 66 IL~~gv~~-~~L~~iE~~~dF~~~L~~~~p------~---~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~ 135 (194)
T COG3963 66 ILSRGVRP-ESLTAIEYSPDFVCHLNQLYP------G---VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRR 135 (194)
T ss_pred HHhcCCCc-cceEEEEeCHHHHHHHHHhCC------C---ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHH
Confidence 45555544 789999999999987776543 3 668889986421 2245699999999887766
Q ss_pred ----HHHHhhCCCCcEEEEEe
Q psy14971 77 ----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~ 93 (156)
+.+...|.+||-+|-..
T Consensus 136 iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 136 IAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHHHHHhcCCCCeEEEEE
Confidence 45678899999888754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0066 Score=48.88 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCEEEEEeCCHHHHHHHHHH------H---------hhhc--CCCC-c-------cceEEEEccCCCCCCCCCCcCEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNN------K---------KLNI--KQNR-K-------SFKNVSVKDGSKGHAEEGPYDIIHL 68 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~------l---------~~~~--g~~n-~-------~~v~~~~gD~~~~~~~~~~fD~I~i 68 (156)
.-+|+|.|+|...++.|++- . ++.+ +-+. . +-|+|...|.....+-.+.||.|||
T Consensus 129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC 208 (268)
T COG1352 129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC 208 (268)
T ss_pred ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEE
Confidence 46899999999999999832 1 1110 0000 0 1288888888775544578999999
Q ss_pred ccCCC--------chHHHHHhhCCCCcEEEEEec
Q psy14971 69 GAACI--------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 69 ~~~~~--------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
-..+- .+-..+.++|+|||.|++-..
T Consensus 209 RNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 209 RNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred cceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 66542 344567899999999998654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0032 Score=49.12 Aligned_cols=88 Identities=20% Similarity=0.147 Sum_probs=69.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCC-cCEEEEccCCC--chHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGP-YDIIHLGAACI--EVPKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~-fD~I~i~~~~~--~i~~~ 78 (156)
|+=++..+++.|..+|+-+|.....+..-++-... ++++| ++++++.+.+-.++ .+ ||.|.+-|-.+ .+.+-
T Consensus 79 GfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e-L~L~n---v~i~~~RaE~~~~~-~~~~D~vtsRAva~L~~l~e~ 153 (215)
T COG0357 79 GFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE-LGLEN---VEIVHGRAEEFGQE-KKQYDVVTSRAVASLNVLLEL 153 (215)
T ss_pred CCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH-hCCCC---eEEehhhHhhcccc-cccCcEEEeehccchHHHHHH
Confidence 44455555788888899999999999999999888 79999 99999998764432 34 99999976543 45566
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
....|++||.+++..+
T Consensus 154 ~~pllk~~g~~~~~k~ 169 (215)
T COG0357 154 CLPLLKVGGGFLAYKG 169 (215)
T ss_pred HHHhcccCCcchhhhH
Confidence 6789999999877654
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0092 Score=47.41 Aligned_cols=62 Identities=8% Similarity=0.023 Sum_probs=46.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.++...... ..+|+++|+++.+++.+++++.. .+| ++++++|+.+.. ...||.|+.+-+..
T Consensus 41 G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---~~~---v~ii~~D~~~~~--~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 41 GALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---AGN---VEIIEGDALKVD--LPEFNKVVSNLPYQ 102 (258)
T ss_pred CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---CCC---EEEEEeccccCC--chhceEEEEcCCcc
Confidence 6676543333 36999999999999999998864 257 999999997632 23589998876654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0084 Score=47.37 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=51.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcC---EEEEccCCCchHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYD---IIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD---~I~i~~~~~~i~~~ 78 (156)
|.++......+ ..|+++|+++++++.+++++.. ..+ ++++.+|+.+.... .|| .|+.+-+..--.+.
T Consensus 41 G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~---~~~---v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~i 110 (253)
T TIGR00755 41 GALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL---YER---LEVIEGDALKVDLP--DFPKQLKVVSNLPYNISSPL 110 (253)
T ss_pred CHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc---CCc---EEEEECchhcCChh--HcCCcceEEEcCChhhHHHH
Confidence 66665433333 4699999999999999988754 246 99999998764332 466 66665554322334
Q ss_pred HHhhC-CCCcEEEE
Q psy14971 79 ILAQL-KPGGRLVF 91 (156)
Q Consensus 79 l~~~L-~pGGrLv~ 91 (156)
+.+.| .+|+...+
T Consensus 111 l~~ll~~~~~~~~~ 124 (253)
T TIGR00755 111 IFKLLEKPKFRLAV 124 (253)
T ss_pred HHHHhccCCCceEE
Confidence 44555 45554433
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0058 Score=46.21 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=50.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchH---HHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVP---KEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~---~~l~~~L~pGGr 88 (156)
...++++|+++++++.|++ + + ++++.+|+.+..+ ...+||.|++..+.++++ ..+.+.++++|.
T Consensus 36 ~~~~~giD~s~~~i~~a~~---~-----~---~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 36 QVRGYGIEIDQDGVLACVA---R-----G---VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCcEEEEeCCHHHHHHHHH---c-----C---CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 3578999999999988753 1 3 6778888765332 246799999999887664 345566677887
Q ss_pred EEEEec
Q psy14971 89 LVFHKG 94 (156)
Q Consensus 89 Lv~~~~ 94 (156)
+++.+.
T Consensus 105 ~ii~~p 110 (194)
T TIGR02081 105 AIVSFP 110 (194)
T ss_pred EEEEcC
Confidence 776653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0044 Score=51.60 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=64.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
.|.|++.|...|. .+|+++|-+ +|++.||+-.+.+ .+..+ |+++.|...+.- -....|+|+....-- .+
T Consensus 188 SGILS~FAaqAGA-~~vYAvEAS-~MAqyA~~Lv~~N-~~~~r--ItVI~GKiEdie-LPEk~DviISEPMG~mL~NERM 261 (517)
T KOG1500|consen 188 SGILSFFAAQAGA-KKVYAVEAS-EMAQYARKLVASN-NLADR--ITVIPGKIEDIE-LPEKVDVIISEPMGYMLVNERM 261 (517)
T ss_pred ccHHHHHHHHhCc-ceEEEEehh-HHHHHHHHHHhcC-Cccce--EEEccCcccccc-CchhccEEEeccchhhhhhHHH
Confidence 4889999888886 899999986 8999999988875 44333 999999987632 235689999865432 22
Q ss_pred HHH---HHhhCCCCcEEEEEec
Q psy14971 76 PKE---ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~---l~~~L~pGGrLv~~~~ 94 (156)
.+. ..+.|+|.|.|+=.++
T Consensus 262 LEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 262 LESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred HHHHHHHHhhcCCCCcccCccc
Confidence 222 3578999999976555
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0071 Score=47.28 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=56.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
+||.+-+-.-++..++++.|+++..++.|.+|++++ ++..+ +++..||+...+..+..+|.|++.++-
T Consensus 28 AYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-~l~~~--i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 28 AYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-NLSER--IDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred hHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-CCcce--EEEeccCCccccCccCCcCEEEEeCCc
Confidence 567766656677789999999999999999999985 65443 999999998877766789999998754
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0079 Score=50.56 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHH--hhhcCC---CCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchHH----------
Q psy14971 14 RALVLILNHYMKVKSKNQNNK--KLNIKQ---NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVPK---------- 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l--~~~~g~---~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~---------- 77 (156)
..+|+-+|.||+|++.++++. +. ++. ++ ++++++..|+..-+.. ...||.|+++-.-+.-|.
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~-~N~~sf~d-pRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRA-LNQGSFSD-PRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhh-hccCCccC-CeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 689999999999999999554 33 221 11 1299999998764333 347999999987665441
Q ss_pred -HHHhhCCCCcEEEEEeccC
Q psy14971 78 -EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 -~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.|+++|++|+-.+..
T Consensus 391 ~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 391 RLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred HHHHHhcCcCceEEEecCCC
Confidence 3568999999999987643
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0023 Score=52.37 Aligned_cols=66 Identities=9% Similarity=-0.029 Sum_probs=50.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CC--CCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HA--EEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~--~~~~fD~I~i~~~~~ 73 (156)
|+-..++..+++ ++|+|+|.|++.++.|+++++. ++ ++ +++++++-.+. +. ...++|.|+.+-+++
T Consensus 33 GHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~-~~-~R---~~~i~~nF~~l~~~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 33 GHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSD-FE-GR---VVLIHDNFANFFEHLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhh-cC-Cc---EEEEeCCHHHHHHHHHhcCCCcccEEEEeccCC
Confidence 455567777765 9999999999999999999987 43 45 99999887542 11 124699999987664
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0043 Score=48.77 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=51.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHH-HHHHHh--hhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSK-NQNNKK--LNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~-A~~~l~--~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
.|.++..+...| ..+|+|+|+++.++.. .+++.+ . ++..| ++. -+..+.+++...+|++|++... +.+
T Consensus 86 tG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~-~~~~n---i~~--~~~~~~~~d~~~~DvsfiS~~~--~l~ 156 (228)
T TIGR00478 86 TGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKV-LERTN---IRY--VTPADIFPDFATFDVSFISLIS--ILP 156 (228)
T ss_pred CCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeE-eecCC---ccc--CCHhHcCCCceeeeEEEeehHh--HHH
Confidence 477776544444 3799999999977654 443322 1 23345 441 1211222333568887776554 566
Q ss_pred HHHhhCCCCcEEEEEecc
Q psy14971 78 EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|++ |.+++.+.+
T Consensus 157 ~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 157 ELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred HHHHHhCc-CeEEEEcCh
Confidence 78899999 988887653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=45.65 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=61.1
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH----H
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP----K 77 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~----~ 77 (156)
+.++.+++ .|.|+++|.++.....--.-+++ -+| +-.+.+|+..+..- -...|+|+.+-+-++=. .
T Consensus 92 SHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~N---i~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~ 164 (231)
T COG1889 92 SHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPN---IIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILAD 164 (231)
T ss_pred hHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCC---ceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHH
Confidence 46788888 79999999999877655554443 147 89999999764321 24589999999987533 3
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
+...-||+||.+++.+.
T Consensus 165 Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 165 NAEFFLKKGGYVVIAIK 181 (231)
T ss_pred HHHHhcccCCeEEEEEE
Confidence 45567999998888764
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=46.60 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC---------chHH-----
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI---------EVPK----- 77 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~---------~i~~----- 77 (156)
++-..+++|+++.|++.|.+ +. +. -.++.+|.-+++|. .+.||.+++-.++. +.|.
T Consensus 71 ~Gh~wiGvDiSpsML~~a~~--~e-~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~ 141 (270)
T KOG1541|consen 71 SGHQWIGVDISPSMLEQAVE--RE-LE------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLR 141 (270)
T ss_pred CCceEEeecCCHHHHHHHHH--hh-hh------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHH
Confidence 34568999999999999998 33 22 24788898888765 58899999876653 2332
Q ss_pred ---HHHhhCCCCcEEEEEeccC
Q psy14971 78 ---EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~~~~~ 96 (156)
.+...|+.|+|-|+-.-+.
T Consensus 142 FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 142 FFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred HhhhhhhhhccCceeEEEeccc
Confidence 4678999999999976543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=47.20 Aligned_cols=63 Identities=11% Similarity=-0.067 Sum_probs=43.8
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
.|.++......+ .+|+++|++++|++.+++++.. ++ ++++.+|+.+...+.-.+|.|+.+-+.
T Consensus 53 ~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~----~~---v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 53 LGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE----DN---LTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred ccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc----Cc---eEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 366775433333 4999999999999999987742 46 999999987643221115778776554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.014 Score=41.52 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=40.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS 54 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~ 54 (156)
|+.++.....++.++|+++|.++++.+.+++|++.+ ++.| ++++.....
T Consensus 10 G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n-~~~~---v~~~~~al~ 58 (143)
T TIGR01444 10 GDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN-NLPN---VVLLNAAVG 58 (143)
T ss_pred cHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc-CCCc---EEEEEeeee
Confidence 778877666677789999999999999999999884 7777 888886654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=48.15 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCc------cc-eEEEEccCCCC-----CCC-CCCcCEEEEccCCCch-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRK------SF-KNVSVKDGSKG-----HAE-EGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~------~~-v~~~~gD~~~~-----~~~-~~~fD~I~i~~~~~~i----- 75 (156)
-++++++|++++.++.|+++.+.. .-.+. .+ ..++.+|+... +.. ..+||+|=+-.+.+-.
T Consensus 85 i~~~vg~Dis~~si~ea~~Ry~~~-~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~ 163 (331)
T PF03291_consen 85 IKHYVGIDISEESIEEARERYKQL-KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEE 163 (331)
T ss_dssp -SEEEEEES-HHHHHHHHHHHHHH-HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHh-ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHH
Confidence 489999999999999999999431 11000 01 67899998642 222 2589999998877632
Q ss_pred -----HHHHHhhCCCCcEEEEEeccC
Q psy14971 76 -----PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 76 -----~~~l~~~L~pGGrLv~~~~~~ 96 (156)
...+.+.|+|||+++..+...
T Consensus 164 ~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 164 KARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 346789999999999988753
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=46.78 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=57.9
Q ss_pred HHHHHhcCCCCEEEEEeCCHH----HHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchHH
Q psy14971 5 NVIVGIKGERALVLILNHYMK----VKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~----~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~~ 77 (156)
+..+.++||.+.|+++|.++. ++.+|+++ .| |..+.-|+..+..- -+..|+||.+-+-+....
T Consensus 172 SHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tN---iiPIiEDArhP~KYRmlVgmVDvIFaDvaqpdq~R 241 (317)
T KOG1596|consen 172 SHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TN---IIPIIEDARHPAKYRMLVGMVDVIFADVAQPDQAR 241 (317)
T ss_pred ehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CC---ceeeeccCCCchheeeeeeeEEEEeccCCCchhhh
Confidence 457789999999999998863 44444322 46 88888898754321 246799999988875443
Q ss_pred ----HHHhhCCCCcEEEEEec
Q psy14971 78 ----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~ 94 (156)
+....||+||-+|+.+.
T Consensus 242 ivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 242 IVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred hhhhhhhhhhccCCeEEEEEe
Confidence 33567999999999764
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=47.53 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCC-CCccc-eEEEEccCCCC-----CCCCCC-cCEEEEccCCCc----------hH
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSF-KNVSVKDGSKG-----HAEEGP-YDIIHLGAACIE----------VP 76 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~-v~~~~gD~~~~-----~~~~~~-fD~I~i~~~~~~----------i~ 76 (156)
+.++++||.+--++.|+++.+...+. .+..| +.|+.||+... ++...| ||+|=+-.+++- ..
T Consensus 141 ~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l 220 (389)
T KOG1975|consen 141 GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIAL 220 (389)
T ss_pred cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHH
Confidence 78999999999999999998764111 10001 78999998642 223345 999988776652 12
Q ss_pred HHHHhhCCCCcEEEEEeccC
Q psy14971 77 KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~~~ 96 (156)
....+.|+|||.++..+++.
T Consensus 221 ~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 221 RNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHhhcCCCcEEEEecCcH
Confidence 35678999999999987653
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.024 Score=43.90 Aligned_cols=81 Identities=11% Similarity=0.152 Sum_probs=41.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCC-----CC---CCCCcCEEEEccCCC--ch
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKG-----HA---EEGPYDIIHLGAACI--EV 75 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~-----~~---~~~~fD~I~i~~~~~--~i 75 (156)
|.+++++.++|+++|++.....+. .++.+ .. ++ |+++.||..+. .. .......|+.++.-. ++
T Consensus 53 ml~~~~~~~~VigiDIdir~~~~~--a~e~h-p~~~r---I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hv 126 (206)
T PF04989_consen 53 MLELLGGKGKVIGIDIDIRPHNRK--AIESH-PMSPR---ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHV 126 (206)
T ss_dssp HHHHTT---EEEEEES-GTT--S---GGGG-----TT---EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSH
T ss_pred HHHHhCCCceEEEEeCCcchhchH--HHhhc-cccCc---eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHH
Confidence 456777889999999975543322 22221 12 34 99999998652 11 123456888888732 33
Q ss_pred H---HHHHhhCCCCcEEEEEe
Q psy14971 76 P---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~---~~l~~~L~pGGrLv~~~ 93 (156)
. +.+...+++|+.+|+--
T Consensus 127 l~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 127 LAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp HHHHHHHHHT--TT-EEEETS
T ss_pred HHHHHHhCccCCCCCEEEEEe
Confidence 3 45678999999999843
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.011 Score=46.09 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH--------HHHhhCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--------EILAQLKP 85 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--------~l~~~L~p 85 (156)
..+|.-+|..+.+++.|++.+... + ... .++.+.-..+-.|+...||+|.+--...++.+ .+.+.|+|
T Consensus 78 f~~VDlVEp~~~Fl~~a~~~l~~~-~-~~v--~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 78 FDEVDLVEPVEKFLEQAKEYLGKD-N-PRV--GEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp -SEEEEEES-HHHHHHHHHHTCCG-G-CCE--EEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred cCEeEEeccCHHHHHHHHHHhccc-C-CCc--ceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 468999999999999999887651 1 231 34444333332344578999999888877653 45788999
Q ss_pred CcEEEEEe
Q psy14971 86 GGRLVFHK 93 (156)
Q Consensus 86 GGrLv~~~ 93 (156)
+|.+|+=.
T Consensus 154 ~G~IvvKE 161 (218)
T PF05891_consen 154 NGVIVVKE 161 (218)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEe
Confidence 99999844
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.025 Score=39.38 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=56.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC------CCCCCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK------GHAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~------~~~~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..| ++|+++|.+++..+.+++. |.+. ++..+-.+ .......+|.+|-..+...
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~-----Ga~~-----~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAKEL-----GADH-----VIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT-----TESE-----EEETTTSSHHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh-----cccc-----cccccccccccccccccccccceEEEEecCcHH
Confidence 55565 467777 9999999999998888742 4221 22222111 0111247999999988777
Q ss_pred hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~~~ 95 (156)
..+...+.|+++|++++.-..
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 777888999999999997654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.07 Score=39.86 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=51.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC--C-CCccceEEEEccCCCCC----CCCCCcCEEEEccCCC-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK--Q-NRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACI- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g--~-~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~- 73 (156)
|-.++.+.......+|+..|.++ .++..+.|++.+ + . .+ +++..-|=.+.. .+..+||.|+..-.+-
T Consensus 57 Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N-~~~~~~~---v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 57 GLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELN-GSLLDGR---VSVRPLDWGDELDSDLLEPHSFDVILASDVLYD 131 (173)
T ss_dssp SHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-
T ss_pred chhHHHHHhccCCceEEEeccch-hhHHHHHHHHhc-ccccccc---ccCcEEEecCcccccccccccCCEEEEecccch
Confidence 66777766664458999999998 999999999875 3 2 33 777765522211 1235799888765442
Q ss_pred -----chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -----EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -----~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|+++|.+++....
T Consensus 132 ~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 132 EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 2335677899999886665543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.016 Score=46.88 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch-------------
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV------------- 75 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i------------- 75 (156)
....++|+|+++.++..|+.|+.-. +. .+ ..+..+|....... ...||.|+.+.+....
T Consensus 76 ~~~~i~G~ei~~~~~~la~~nl~l~-~~~~~~---~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 76 KEINIYGIEIDPEAVALAKLNLLLH-GIDNSN---INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp CCEEEEEEES-HHHHHHHHHHHHHT-THHCBG---CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred ccceeEeecCcHHHHHHHHhhhhhh-cccccc---ccccccccccccccccccccccccCCCCccccccccccccccccc
Confidence 4579999999999999999998652 43 33 56889997653222 3689999998754321
Q ss_pred -----H---------HHHHhhCCCCcEEEEEec
Q psy14971 76 -----P---------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -----~---------~~l~~~L~pGGrLv~~~~ 94 (156)
+ ....+.|++||++++.+.
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 0 234789999999887754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.085 Score=43.08 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=62.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCC-CCCcCEEEEccCCCchHH---------HHHhh
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAE-EGPYDIIHLGAACIEVPK---------EILAQ 82 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~-~~~fD~I~i~~~~~~i~~---------~l~~~ 82 (156)
.+|.-.|.++.-++..++.++. .|+.+. ++|.++|+.+. +.. ...++.+++++-..-.++ -+.+.
T Consensus 162 ~~i~LrDys~~Nv~~g~~li~~-~gL~~i--~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a 238 (311)
T PF12147_consen 162 DSILLRDYSPINVEKGRALIAE-RGLEDI--ARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARA 238 (311)
T ss_pred ceEEEEeCCHHHHHHHHHHHHH-cCCccc--eEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHH
Confidence 5899999999999999999998 598882 39999999764 222 345899999987765553 24677
Q ss_pred CCCCcEEEEEeccCC
Q psy14971 83 LKPGGRLVFHKGLHN 97 (156)
Q Consensus 83 L~pGGrLv~~~~~~~ 97 (156)
|.|||.||..-.+.+
T Consensus 239 l~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 239 LEPGGYLIYTGQPWH 253 (311)
T ss_pred hCCCcEEEEcCCCCC
Confidence 999999999765443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.021 Score=45.37 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=52.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC----CCCCCCCCcCEEEEccCCCchH--------HHHHh
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHAEEGPYDIIHLGAACIEVP--------KEILA 81 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~----~~~~~~~~fD~I~i~~~~~~i~--------~~l~~ 81 (156)
+-.|++.|.+|..++..+++-... -.+ +..-..|.. ....+.+++|.|.+-...+.++ +.+.+
T Consensus 97 ~l~v~acDfsp~Ai~~vk~~~~~~--e~~---~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ 171 (264)
T KOG2361|consen 97 RLKVYACDFSPRAIELVKKSSGYD--ESR---VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRT 171 (264)
T ss_pred CeEEEEcCCChHHHHHHHhccccc--hhh---hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHH
Confidence 368999999999999999886542 122 333333433 2234467899988877666554 46789
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
+|||||.|++-
T Consensus 172 llKPGG~llfr 182 (264)
T KOG2361|consen 172 LLKPGGSLLFR 182 (264)
T ss_pred HhCCCcEEEEe
Confidence 99999999995
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.043 Score=43.99 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=46.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~ 72 (156)
|.||. .++....+|+++|+|+.+++..++.+.. .+| ++++.||+...... ...+++|+.+-+.
T Consensus 42 GaLT~--~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---~~n---~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 42 GALTE--PLLERAARVTAIEIDRRLAEVLKERFAP---YDN---LTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CHHHH--HHHhhcCeEEEEEeCHHHHHHHHHhccc---ccc---eEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 55553 2333347899999999999999998864 257 99999999874332 2268999987665
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.018 Score=47.06 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=51.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CC--CCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HA--EEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~--~~~~fD~I~i~~~~~ 73 (156)
|+--.+...+++.++++++|.|++.++.|++.+.. ++ ++ +++++++-... +. ..+.+|.|+.+-+++
T Consensus 36 GHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-~~-~r---~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 36 GHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-FD-GR---VTLVHGNFANLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-cC-Cc---EEEEeCcHHHHHHHHHhcCCCceeEEEEeccCC
Confidence 44556666777789999999999999999999988 45 46 99999875432 11 135789999987665
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.091 Score=41.36 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=60.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc---cCCCCCCCCCCcCEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK---DGSKGHAEEGPYDIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g---D~~~~~~~~~~fD~I~i~~~~~---- 73 (156)
||...-..+...| -+-+-||-+|+.+++-|++--. .-+| |.++.| |....+++ +.||.|+-+.=.+
T Consensus 112 MgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~--ek~n---Viil~g~WeDvl~~L~d-~~FDGI~yDTy~e~yEd 184 (271)
T KOG1709|consen 112 MGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR--EKEN---VIILEGRWEDVLNTLPD-KHFDGIYYDTYSELYED 184 (271)
T ss_pred hHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc--cccc---eEEEecchHhhhccccc-cCcceeEeechhhHHHH
Confidence 4444433344444 4566799999999988877543 3367 888887 44433444 5599999987543
Q ss_pred --chHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 --EVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 --~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+..+.+.++|||+|.+-+..+..
T Consensus 185 l~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 185 LRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred HHHHHHHHhhhcCCCceEEEecCcc
Confidence 33456789999999999987754
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.054 Score=42.25 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-CCCCCCCcCEEEEccCCCchHHHHHhh--CCCCcEE
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAEEGPYDIIHLGAACIEVPKEILAQ--LKPGGRL 89 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~~~~fD~I~i~~~~~~i~~~l~~~--L~pGGrL 89 (156)
-+|+++.|-.+++-+...++.+.. .+..+. ++|+.||..+ ..+.....|++++++-..+.-..+++. +.|.|-+
T Consensus 68 TgGR~vCIvp~~~~~~~~~~~l~~-~~~~~~--vEfvvg~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaV 144 (218)
T PF07279_consen 68 TGGRHVCIVPDEQSLSEYKKALGE-AGLSDV--VEFVVGEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAV 144 (218)
T ss_pred cCCeEEEEcCChhhHHHHHHHHhh-cccccc--ceEEecCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceE
Confidence 359999999999988888888877 476553 7999998643 445556799999999987777445444 4455654
Q ss_pred EE
Q psy14971 90 VF 91 (156)
Q Consensus 90 v~ 91 (156)
|+
T Consensus 145 VV 146 (218)
T PF07279_consen 145 VV 146 (218)
T ss_pred EE
Confidence 44
|
The function of this family is unknown. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.013 Score=48.62 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=55.4
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCC---CCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSK---GHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~---~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++++ +++.|. .+|+.+|++++.++.|++..... -..| ... +... .......+|.+|-..+....-
T Consensus 181 GLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~-~~~~------~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~ 252 (350)
T COG1063 181 GLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD-VVVN------PSEDDAGAEILELTGGRGADVVIEAVGSPPAL 252 (350)
T ss_pred HHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe-Eeec------CccccHHHHHHHHhCCCCCCEEEECCCCHHHH
Confidence 556544 555554 89999999999999999865321 1111 111 1100 111123599999988855555
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
....+.+++||++++.-.
T Consensus 253 ~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 253 DQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHHHHHhcCCCEEEEEec
Confidence 678899999999999644
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.081 Score=44.34 Aligned_cols=78 Identities=24% Similarity=0.215 Sum_probs=55.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-------CC--CCCCcCEEEEccCCCch------HH-
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-------HA--EEGPYDIIHLGAACIEV------PK- 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-------~~--~~~~fD~I~i~~~~~~i------~~- 77 (156)
.|.|++=|.++..+..-+..+.+ +...+ +.+...|+... +. +.-.||+|+++.+|+.- +.
T Consensus 183 ~g~vvaND~d~~R~~~L~~q~~~-l~~~~---~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i 258 (375)
T KOG2198|consen 183 RGYVVANDVDPKRLNMLVHQLKR-LPSPN---LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNI 258 (375)
T ss_pred CCeeEecccCHHHHHHHHHHHhc-cCCcc---eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchH
Confidence 47999999999999999888866 34444 55555555321 11 22469999999988631 10
Q ss_pred ----------------------HHHhhCCCCcEEEEEecc
Q psy14971 78 ----------------------EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ----------------------~l~~~L~pGGrLv~~~~~ 95 (156)
.-+++||+||+||..+++
T Consensus 259 ~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 259 WKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 126789999999998764
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.019 Score=46.84 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=59.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhh-cCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCchH----------HHHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLN-IKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEVP----------KEIL 80 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~-~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i~----------~~l~ 80 (156)
-+.+.-+|++..+++..++-+... -|+++ +.|.+..||+..-+.. ..+||+|+++.+-+..| ..+.
T Consensus 145 ve~i~~~eiD~~Vie~sk~y~p~la~gy~~-~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~ 223 (337)
T KOG1562|consen 145 VENILLCEIDENVIESSKQYLPTLACGYEG-KKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVL 223 (337)
T ss_pred ccceeeehhhHHHHHHHHHHhHHHhcccCC-CceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHH
Confidence 367889999999999999998763 23321 1299999998653322 57899999999877665 2467
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.||++|.++..
T Consensus 224 ~aLk~dgv~~~q 235 (337)
T KOG1562|consen 224 DALKGDGVVCTQ 235 (337)
T ss_pred HhhCCCcEEEEe
Confidence 899999999886
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=37.71 Aligned_cols=67 Identities=18% Similarity=0.018 Sum_probs=49.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchHHHHHhhCC-CCcEEEE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVPKEILAQLK-PGGRLVF 91 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~~~l~~~L~-pGGrLv~ 91 (156)
+..|+++|++++.++.|+++ + +.++.+|..+...+ ...+|+|+.--+.+++...+.+.=+ -|.-|++
T Consensus 39 G~~ViaIDi~~~aV~~a~~~-----~------~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 39 GFDVIVIDINEKAVEKAKKL-----G------LNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred CCEEEEEECCHHHHHHHHHh-----C------CeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 47999999999988777644 2 56888998875444 4679999999888888776665433 3555555
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.58 Score=31.08 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=50.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCCC--CCcCEEEEccCC-----CchHHHHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAEE--GPYDIIHLGAAC-----IEVPKEILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~~--~~fD~I~i~~~~-----~~i~~~l~~~L~pG 86 (156)
..++++|.++.+++.++..... .+..+ +.+..+|.... .+-. ..||.+...... ......+.+.|+|+
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (257)
T COG0500 73 AYVVGVDLSPEMLALARARAEG-AGLGL---VDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPG 148 (257)
T ss_pred ceEEEEeCCHHHHHHHHhhhhh-cCCCc---eEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCC
Confidence 4899999999999996655432 12222 46777776642 2222 379999443333 23335678899999
Q ss_pred cEEEEEecc
Q psy14971 87 GRLVFHKGL 95 (156)
Q Consensus 87 GrLv~~~~~ 95 (156)
|.+++....
T Consensus 149 g~~~~~~~~ 157 (257)
T COG0500 149 GRLVLSDLL 157 (257)
T ss_pred cEEEEEecc
Confidence 999997754
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.029 Score=46.04 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=43.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC------CCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG------HAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~------~~~~~~fD~I~i~~~~~ 73 (156)
|+-..+.+..++ ++|+++|.|+++++.|++++.. ++ ++ +.+++++-.+. ......+|.|+++-+++
T Consensus 33 GHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-~~-~r---~~~~~~~F~~l~~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 33 GHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-FD-DR---FIFIHGNFSNLDEYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp HHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-CC-TT---EEEEES-GGGHHHHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-cc-ce---EEEEeccHHHHHHHHHHccCCCccCEEEEccccC
Confidence 455566666666 9999999999999999999886 33 45 99999886542 11235799999988664
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=44.50 Aligned_cols=54 Identities=7% Similarity=-0.069 Sum_probs=38.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---C-C-CCCCcCEEEEccCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---H-A-EEGPYDIIHLGAAC 72 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~-~-~~~~fD~I~i~~~~ 72 (156)
-.++++|+++..++.|+.++.. ++... +.+..+|.... . . ..+.||+|+.+-+.
T Consensus 64 ~~i~g~DId~~a~~~a~~~l~~-~~~~~---~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 64 LNIYFADIDKTLLKRAKKLLGE-FALLE---INVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred eeeeeechhHHHHHHHHHHHhh-cCCCC---ceeeecccccccccccccccCcccEEEeCCCc
Confidence 5799999999999999999987 35223 56666664321 1 1 13579999998753
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.16 Score=37.96 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=57.0
Q ss_pred chHHH---HHHhcCCCCE--EEEEeCCHHHHHHHH---HHHhhhcCCCCccceEEEE-ccCCCCCC----CCCCcCEEEE
Q psy14971 2 GDLNV---IVGIKGERAL--VLILNHYMKVKSKNQ---NNKKLNIKQNRKSFKNVSV-KDGSKGHA----EEGPYDIIHL 68 (156)
Q Consensus 2 G~la~---la~l~g~~g~--V~avD~~~~~~~~A~---~~l~~~~g~~n~~~v~~~~-gD~~~~~~----~~~~fD~I~i 68 (156)
|++++ +++..++... .+++|..+++.+.-. +|++. +.-.+ +++.. -|+..... ....||+|+.
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~-L~~~g---~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE-LRELG---VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH-HhhcC---CccccCCCCCcccccccccCCcCCEEEE
Confidence 56664 4445453334 556777777776644 67766 43333 55554 36655322 2478999999
Q ss_pred ccCCCc---------h----------HHHHHhhCCCCcEEEEEeccC
Q psy14971 69 GAACIE---------V----------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 69 ~~~~~~---------i----------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.+... + ..+..+.|+++|.+.+...+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 886543 1 124568899999999988754
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=41.15 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=38.4
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-cCCCC----ccceEEEEccCCCCCC-CCCCcCEEEEccCCCc
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-IKQNR----KSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE 74 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-~g~~n----~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~ 74 (156)
|+++..+| ++|+++|.+|-+....++-++++ -+.+- -+.++++++|..+.+. ...+||+|+++-+.++
T Consensus 90 a~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 90 AFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 45444566 68999999999998888777653 01110 0129999999987554 2578999999998764
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.024 Score=45.03 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch--H---HHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV--P---KEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i--~---~~l~~~L~pGGr 88 (156)
..+|+|+|++++|++.|++.......... .++...+..+......+.|.|.+.-+++.. + ....+.||+.|-
T Consensus 55 ~k~VIatD~s~~mL~~a~k~~~~~y~~t~---~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 55 YKEVIATDVSEAMLKVAKKHPPVTYCHTP---STMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGG 131 (261)
T ss_pred hhhheeecCCHHHHHHhhcCCCcccccCC---ccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCC
Confidence 36899999999999999876543101011 233333333333235689999998888732 2 456789988664
Q ss_pred EEEE
Q psy14971 89 LVFH 92 (156)
Q Consensus 89 Lv~~ 92 (156)
++++
T Consensus 132 ~iav 135 (261)
T KOG3010|consen 132 LIAV 135 (261)
T ss_pred EEEE
Confidence 4443
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.045 Score=47.62 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=55.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCC-----CCcC-EEEEccCCCchHHHHHhh---CC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEE-----GPYD-IIHLGAACIEVPKEILAQ---LK 84 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~-----~~fD-~I~i~~~~~~i~~~l~~~---L~ 84 (156)
..+|++||++++.++-|+.|.+.+ |++| .+|++|-+.+..+.. +.-+ .++++-+...+...+..+ .+
T Consensus 405 ~~~ViGvEi~~~aV~dA~~nA~~N-gisN---a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 405 VKRVIGVEISPDAVEDAEKNAQIN-GISN---ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYK 480 (534)
T ss_pred ccceeeeecChhhcchhhhcchhc-Cccc---eeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence 379999999999999999999997 9999 999999665544331 2346 777777766555444333 33
Q ss_pred CCcEEEEEecc
Q psy14971 85 PGGRLVFHKGL 95 (156)
Q Consensus 85 pGGrLv~~~~~ 95 (156)
.-=|++...+.
T Consensus 481 ~~~rlvyvSCn 491 (534)
T KOG2187|consen 481 NPRRLVYVSCN 491 (534)
T ss_pred CccceEEEEcC
Confidence 23456665554
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.23 Score=35.68 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=56.3
Q ss_pred CchHHHHHHh-c---CCCCEEEEEeCCHHHHHHHHHHHhhhcC--C-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGI-K---GERALVLILNHYMKVKSKNQNNKKLNIK--Q-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l-~---g~~g~V~avD~~~~~~~~A~~~l~~~~g--~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.|||+.+... + .+.-+|++||.++++++.|+++.+. ++ . .+ +++..++.... ....+.+.++---++.
T Consensus 36 ~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~vgLHaCG 110 (141)
T PF13679_consen 36 KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK-LGSDLEKR---LSFIQGDIADE-SSSDPPDILVGLHACG 110 (141)
T ss_pred hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH-hcchhhcc---chhhccchhhh-cccCCCeEEEEeeccc
Confidence 3899975444 2 4678999999999999999999887 46 3 34 66777664432 2234567777666777
Q ss_pred chHHHHHh-hCCCCcEEEE
Q psy14971 74 EVPKEILA-QLKPGGRLVF 91 (156)
Q Consensus 74 ~i~~~l~~-~L~pGGrLv~ 91 (156)
.+.+.+++ .++++-+.++
T Consensus 111 ~Ls~~~l~~~~~~~~~~l~ 129 (141)
T PF13679_consen 111 DLSDRALRLFIRPNARFLV 129 (141)
T ss_pred chHHHHHHHHHHcCCCEEE
Confidence 76654433 2235555444
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.17 Score=40.60 Aligned_cols=68 Identities=19% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC------chHHHHHhhCCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI------EVPKEILAQLKPG 86 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~------~i~~~l~~~L~pG 86 (156)
..+|++.|.++.|.. ++++ -|+ +++..| + +. ...+||+|.+-.-+. .+-..+.+.|+|+
T Consensus 116 f~~v~aTE~S~~Mr~----rL~~-kg~------~vl~~~--~-w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 116 FKEVYATEASPPMRW----RLSK-KGF------TVLDID--D-WQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred cceEEeecCCHHHHH----HHHh-CCC------eEEehh--h-hhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCC
Confidence 468999999999964 4444 243 333333 2 32 345899999866543 2335678899999
Q ss_pred cEEEEEecc
Q psy14971 87 GRLVFHKGL 95 (156)
Q Consensus 87 GrLv~~~~~ 95 (156)
|+|++.+.-
T Consensus 182 G~lilAvVl 190 (265)
T PF05219_consen 182 GRLILAVVL 190 (265)
T ss_pred CEEEEEEEe
Confidence 999998764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.11 Score=40.10 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=50.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh------cCC--CCccceEEEEccCCCCCC-C--CCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN------IKQ--NRKSFKNVSVKDGSKGHA-E--EGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~------~g~--~n~~~v~~~~gD~~~~~~-~--~~~fD~I~i~~ 70 (156)
|-+.+.|.+..+-.+++|||+.+.+.+.|+...+.+ +|. .. +++..||..+... . -..-|+||++.
T Consensus 54 G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~---v~l~~gdfl~~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 54 GNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGK---VELIHGDFLDPDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp SHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---E---EEEECS-TTTHHHHHHHGHC-SEEEE--
T ss_pred CHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccc---ceeeccCccccHhHhhhhcCCCEEEEec
Confidence 555555666555567999999999999998755432 232 33 8888999765311 0 12359999998
Q ss_pred CCC--chHH---HHHhhCCCCcEEEEE
Q psy14971 71 ACI--EVPK---EILAQLKPGGRLVFH 92 (156)
Q Consensus 71 ~~~--~i~~---~l~~~L~pGGrLv~~ 92 (156)
-+= .+.. ..+..||+|-++|..
T Consensus 131 ~~F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 131 TCFDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 762 2222 345678888887763
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.036 Score=46.25 Aligned_cols=60 Identities=18% Similarity=0.085 Sum_probs=44.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHH-------HHHHHHhhhcCCCCccceEEEEccCCC-CCCCCCCcCEEEEccC
Q psy14971 8 VGIKGERALVLILNHYMKVKS-------KNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAEEGPYDIIHLGAA 71 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~-------~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~~~~fD~I~i~~~ 71 (156)
|..-| +.|+|-|||-.++. ..+.|+++ +|... .++.+..+|... +|.....||+|+++.+
T Consensus 226 aa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQ-Yg~~~-~fldvl~~D~sn~~~rsn~~fDaIvcDPP 293 (421)
T KOG2671|consen 226 AAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQ-YGSSS-QFLDVLTADFSNPPLRSNLKFDAIVCDPP 293 (421)
T ss_pred hhhhc--ceeeccccchheeecccCCCcchhHhHHH-hCCcc-hhhheeeecccCcchhhcceeeEEEeCCC
Confidence 44444 79999999998887 35678888 57422 137889999865 4555778999999864
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.38 Score=37.27 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--------CCCCcCEEEEccCCC---
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--------EEGPYDIIHLGAACI--- 73 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--------~~~~fD~I~i~~~~~--- 73 (156)
-++++.+++.++|+++|+.|= + -..+ |.++.+|...... ...++|.|+++++..
T Consensus 61 Qva~~~~~~~~~ivavDi~p~---------~---~~~~---V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g 125 (205)
T COG0293 61 QVAAKKLGAGGKIVAVDILPM---------K---PIPG---VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSG 125 (205)
T ss_pred HHHHHHhCCCCcEEEEECccc---------c---cCCC---ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCC
Confidence 357788898899999999863 2 2356 9999999875321 134579999998762
Q ss_pred -----ch---------HHHHHhhCCCCcEEEEEec
Q psy14971 74 -----EV---------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -----~i---------~~~l~~~L~pGGrLv~~~~ 94 (156)
+. ++...+.|+|||.+++-.-
T Consensus 126 ~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 126 NRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 11 1234678999999999764
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.29 Score=39.73 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=45.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
|-||. .++..+..|+|+|+|+.|+...+++.+. ....+. .++++||.... +..-||.++.+-+.
T Consensus 70 GnLT~--~lLe~~kkVvA~E~Dprmvael~krv~g-tp~~~k--LqV~~gD~lK~--d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 70 GNLTV--KLLEAGKKVVAVEIDPRMVAELEKRVQG-TPKSGK--LQVLHGDFLKT--DLPRFDGCVSNLPY 133 (315)
T ss_pred CHHHH--HHHHhcCeEEEEecCcHHHHHHHHHhcC-CCccce--eeEEecccccC--CCcccceeeccCCc
Confidence 55553 2333358999999999999999999875 233344 99999998753 23458999986543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.078 Score=44.71 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=56.1
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCC-ccceEEEEccCCCCC-CCCCCcCEEEEccC--CCchHHHHHhhCCCCc
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNR-KSFKNVSVKDGSKGH-AEEGPYDIIHLGAA--CIEVPKEILAQLKPGG 87 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n-~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~--~~~i~~~l~~~L~pGG 87 (156)
....+|++-|++++.++..++|++.+ ++.. + +++.+.|+.... .....||.|=+|.= ....-+...+.++.||
T Consensus 72 ~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~--~~v~~~DAn~ll~~~~~~fD~IDlDPfGSp~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 72 AGVDKVTANDISPEAVELIKRNLELN-GLEDER--IEVSNMDANVLLYSRQERFDVIDLDPFGSPAPFLDSALQAVKDGG 148 (377)
T ss_dssp SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCC--EEEEES-HHHHHCHSTT-EEEEEE--SS--HHHHHHHHHHEEEEE
T ss_pred CCCCEEEEecCCHHHHHHHHHhHhhc-cccCce--EEEehhhHHHHhhhccccCCEEEeCCCCCccHhHHHHHHHhhcCC
Confidence 33479999999999999999999886 6543 3 889999986533 23567999999853 2234467788899999
Q ss_pred EEEEEec
Q psy14971 88 RLVFHKG 94 (156)
Q Consensus 88 rLv~~~~ 94 (156)
.|.+...
T Consensus 149 ll~vTaT 155 (377)
T PF02005_consen 149 LLCVTAT 155 (377)
T ss_dssp EEEEEE-
T ss_pred EEEEecc
Confidence 9999754
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.17 Score=41.22 Aligned_cols=83 Identities=18% Similarity=0.113 Sum_probs=50.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceE-EEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKN-VSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~-~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
|.+++ +|+..|. .+|+++|.+++.++.|++ +|.+. +- ....+..+.....+.+|.||-..+.+..-+..
T Consensus 182 G~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~-----lGa~~---vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~ 252 (343)
T PRK09880 182 GCLIVAAVKTLGA-AEIVCADVSPRSLSLARE-----MGADK---LVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTC 252 (343)
T ss_pred HHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH-----cCCcE---EecCCcccHHHHhccCCCCCEEEECCCCHHHHHHH
Confidence 44444 4555552 479999999998888764 24322 11 00011111111124599999877765555667
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.|++||+++..-
T Consensus 253 ~~~l~~~G~iv~~G 266 (343)
T PRK09880 253 LEVTRAKGVMVQVG 266 (343)
T ss_pred HHHhhcCCEEEEEc
Confidence 88999999999853
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.013 Score=43.78 Aligned_cols=78 Identities=18% Similarity=0.108 Sum_probs=46.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-----C----C-CCCCcCEEEEccC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-----H----A-EEGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-----~----~-~~~~fD~I~i~~~ 71 (156)
|+..++++..++.++|+|+|+.+. . ...+ +..+.+|..+. . . ...+||.|++|++
T Consensus 36 Gws~~~~~~~~~~~~v~avDl~~~---------~---~~~~---~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 36 GWSQVLLQRGGPAGRVVAVDLGPM---------D---PLQN---VSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp HHHHHHHTSTTTEEEEEEEESSST---------G---S-TT---EEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred ceeeeeeecccccceEEEEecccc---------c---cccc---eeeeecccchhhHHHhhhhhccccccCcceeccccc
Confidence 455567777667799999999977 1 1234 55556665321 1 1 1258999999994
Q ss_pred CC--chH---------------HHHHhhCCCCcEEEEEec
Q psy14971 72 CI--EVP---------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 72 ~~--~i~---------------~~l~~~L~pGGrLv~~~~ 94 (156)
.. ..+ ....+.|+|||.+|+-+-
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 32 110 123578999999888653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.095 Score=40.52 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=62.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|-.++.|.+.|. ..|++.|++|...+..+-|.+.+ |+ + |.+...|..- +...||.++.+--+-+=+
T Consensus 91 gLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an-gv-~---i~~~~~d~~g---~~~~~Dl~LagDlfy~~~~a~~l 161 (218)
T COG3897 91 GLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN-GV-S---ILFTHADLIG---SPPAFDLLLAGDLFYNHTEADRL 161 (218)
T ss_pred ChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc-cc-e---eEEeeccccC---CCcceeEEEeeceecCchHHHHH
Confidence 555667777775 89999999999999999999985 75 5 8899988653 446799999876543211
Q ss_pred HHHHhhCCCCcEEEEEe
Q psy14971 77 KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~ 93 (156)
-.|+..|+..|.-|++.
T Consensus 162 ~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 162 IPWKDRLAEAGAAVLVG 178 (218)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 13788888888777743
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.27 Score=39.64 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=54.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---C--------CCCCcCEEEEccCCCch
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---A--------EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~--------~~~~fD~I~i~~~~~~i 75 (156)
+|+.+.|.++|+=+|++|-.+..+|.-+... .-.. ..++.+|..+.- . +....=++++.+-++.+
T Consensus 88 vAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-~~g~---t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v 163 (267)
T PF04672_consen 88 VAQRVAPDARVVYVDNDPVVLAHARALLADN-PRGR---TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFV 163 (267)
T ss_dssp HHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSE---EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS
T ss_pred HHHhhCCCceEEEECCCchHHHHHHhhhcCC-CCcc---EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccC
Confidence 5777889999999999999999999998763 2223 789999987521 1 11222356666666655
Q ss_pred H---------HHHHhhCCCCcEEEEEeccCC
Q psy14971 76 P---------KEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 76 ~---------~~l~~~L~pGGrLv~~~~~~~ 97 (156)
+ ..+.+.|.||..|++...+.+
T Consensus 164 ~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 164 PDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 4 357899999999999887554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.23 Score=38.07 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=67.8
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
|..+ +++...++.....+.|++|+.++..++.++.+ +. + +.++..|...++.. ++.|.++.+-+.- .+
T Consensus 55 GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-~~-~---~~~V~tdl~~~l~~-~~VDvLvfNPPYVpt~~~~i 128 (209)
T KOG3191|consen 55 GVVSTFLASVIGPQALYLATDINPEALEATLETARCN-RV-H---IDVVRTDLLSGLRN-ESVDVLVFNPPYVPTSDEEI 128 (209)
T ss_pred chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-CC-c---cceeehhHHhhhcc-CCccEEEECCCcCcCCcccc
Confidence 4554 67888889999999999999999999888764 43 4 78899998877765 7899999886531 11
Q ss_pred ------------------HHH----HHhhCCCCcEEEEEeccCCC
Q psy14971 76 ------------------PKE----ILAQLKPGGRLVFHKGLHNG 98 (156)
Q Consensus 76 ------------------~~~----l~~~L~pGGrLv~~~~~~~~ 98 (156)
.+. +-+.|.|.|.++......+.
T Consensus 129 ~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 129 GDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred hhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 122 33567899999998765543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.2 Score=40.99 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=48.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeC---CHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNH---YMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~---~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+..| .+|++++. +++..+.++ + +|.+. +.....|..+ ......+|.||-..+.+....
T Consensus 185 G~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~----~-~Ga~~---v~~~~~~~~~-~~~~~~~d~vid~~g~~~~~~ 253 (355)
T cd08230 185 GLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE----E-LGATY---VNSSKTPVAE-VKLVGEFDLIIEATGVPPLAF 253 (355)
T ss_pred HHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH----H-cCCEE---ecCCccchhh-hhhcCCCCEEEECcCCHHHHH
Confidence 44554 456665 48999997 566666654 3 34321 2111111111 112246999999887655556
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
...+.|++||+++..-
T Consensus 254 ~~~~~l~~~G~~v~~G 269 (355)
T cd08230 254 EALPALAPNGVVILFG 269 (355)
T ss_pred HHHHHccCCcEEEEEe
Confidence 6789999999998753
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.16 Score=39.36 Aligned_cols=76 Identities=14% Similarity=-0.021 Sum_probs=53.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCC-------CCCcCEEEEccCCCchH--------HH
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAE-------EGPYDIIHLGAACIEVP--------KE 78 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~-------~~~fD~I~i~~~~~~i~--------~~ 78 (156)
-.=..-|.++......+..+.. .+.+|. ..-+.-|+... ++. ..+||+||+-..++=+| ..
T Consensus 50 l~WqPSD~~~~~~~sI~a~~~~-~~~~Nv--~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~ 126 (204)
T PF06080_consen 50 LTWQPSDPDDNLRPSIRAWIAE-AGLPNV--RPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAG 126 (204)
T ss_pred CEEcCCCCChHHHhhHHHHHHh-cCCccc--CCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHH
Confidence 4556678888888777777777 377773 23555676654 332 35899999988776444 34
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
..+.|++||.|++.=
T Consensus 127 a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 127 AARLLKPGGLLFLYG 141 (204)
T ss_pred HHHhCCCCCEEEEeC
Confidence 568999999999853
|
The function of this family is unknown. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.17 Score=39.26 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=46.9
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHH----HHHHHHHHHhh-hcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMK----VKSKNQNNKKL-NIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-- 73 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~----~~~~A~~~l~~-~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-- 73 (156)
||.+ +++..+++.|.|+++=-.+- ..+..+.+... .-...| ++.+-.+..... ...+.|.++.....+
T Consensus 60 Gy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN---~e~~~~~~~A~~-~pq~~d~~~~~~~yhdm 135 (238)
T COG4798 60 GYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN---VEVIGKPLVALG-APQKLDLVPTAQNYHDM 135 (238)
T ss_pred ccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh---hhhhCCcccccC-CCCcccccccchhhhhh
Confidence 6666 67899999999999854432 11111111100 002234 444444433222 123345555433222
Q ss_pred -----------chHHHHHhhCCCCcEEEEEe
Q psy14971 74 -----------EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 -----------~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+-..+.+.|||||.+++..
T Consensus 136 h~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 136 HNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred hccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 22346789999999999864
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.2 Score=43.56 Aligned_cols=84 Identities=14% Similarity=0.049 Sum_probs=64.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC----CCCCCCcCEEEEcc--CCCchHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG----HAEEGPYDIIHLGA--ACIEVPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~----~~~~~~fD~I~i~~--~~~~i~~~l~~ 81 (156)
|..++.-..|++-|.++..++..++|.+.+ +.++. ++..++|+... ......||+|-++. +...+-+..++
T Consensus 128 a~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-~v~~i--ve~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs~s~FLDsAvq 204 (525)
T KOG1253|consen 128 AKELPGVRQVVANDLNENAVTSIQRNVELN-GVEDI--VEPHHSDANVLMYEHPMVAKFFDVIDLDPYGSPSPFLDSAVQ 204 (525)
T ss_pred HHHhcchhhhcccCCCHHHHHHHHhhhhhc-Cchhh--cccccchHHHHHHhccccccccceEecCCCCCccHHHHHHHH
Confidence 444555678999999999999999999875 55543 77788887431 11136799999984 55667788899
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.++.||.|.+...
T Consensus 205 av~~gGLL~vT~T 217 (525)
T KOG1253|consen 205 AVRDGGLLCVTCT 217 (525)
T ss_pred HhhcCCEEEEEec
Confidence 9999999999754
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.83 Score=37.72 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=51.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEE--EEccCCCCC---CC---CCCcCEE-EEccCCCchHH-------
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNV--SVKDGSKGH---AE---EGPYDII-HLGAACIEVPK------- 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~--~~gD~~~~~---~~---~~~fD~I-~i~~~~~~i~~------- 77 (156)
...-+++|++.++++.+.+++... .+++ +++ ++||-.++. +. ......+ |.+.+..++++
T Consensus 104 ~~~Y~plDIS~~~L~~a~~~L~~~-~~p~---l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL 179 (319)
T TIGR03439 104 SVDYYALDVSRSELQRTLAELPLG-NFSH---VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFL 179 (319)
T ss_pred CceEEEEECCHHHHHHHHHhhhhc-cCCC---eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHH
Confidence 467899999999999999999831 3455 655 788875542 21 1223444 44556666542
Q ss_pred -HHHh-hCCCCcEEEEEec
Q psy14971 78 -EILA-QLKPGGRLVFHKG 94 (156)
Q Consensus 78 -~l~~-~L~pGGrLv~~~~ 94 (156)
.+.+ .|+|||.|++-+.
T Consensus 180 ~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 180 AGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHHHHhhCCCCCEEEEecC
Confidence 4556 7999999999654
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.25 Score=40.27 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=52.6
Q ss_pred hHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccC
Q psy14971 3 DLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAA 71 (156)
Q Consensus 3 ~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~ 71 (156)
+|+-+ +.+.+-..+|.-+|||+.+++.-.+-.+. +|++| ++...-|...++|+ ...||.++.+.+
T Consensus 163 DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee-~g~~~---ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 163 DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE-LGYNN---IEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH-hCccc---hhheeehhcccChHHHHhhCCeeecCch
Confidence 34544 34555567999999999999999999999 69999 99999999988887 378998887654
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.61 Score=38.83 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=58.4
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------H
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------K 77 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~ 77 (156)
++-.++....+|-+++.+...+-.++.++. . | |+.+.||..+..|. -|+|++--.+++.+ .
T Consensus 191 v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~-g------V~~v~gdmfq~~P~---~daI~mkWiLhdwtDedcvkiLk 259 (342)
T KOG3178|consen 191 VLKNLLSKYPHIKGINFDLPFVLAAAPYLA-P-G------VEHVAGDMFQDTPK---GDAIWMKWILHDWTDEDCVKILK 259 (342)
T ss_pred HHHHHHHhCCCCceeecCHHHHHhhhhhhc-C-C------cceecccccccCCC---cCeEEEEeecccCChHHHHHHHH
Confidence 333444345679999999999988888875 2 4 66688998876443 47999988777654 4
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+++.|+|||.+++...
T Consensus 260 nC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 260 NCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHhCCCCCEEEEEec
Confidence 67899999999999765
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.61 Score=37.04 Aligned_cols=46 Identities=13% Similarity=-0.015 Sum_probs=34.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG 56 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~ 56 (156)
|.+|- +++.. .+|+++|+|+.+.+..++++.. .+| ++++.+|+.+.
T Consensus 42 G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~---~~~---~~vi~~D~l~~ 88 (262)
T PF00398_consen 42 GALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS---NPN---VEVINGDFLKW 88 (262)
T ss_dssp SCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT---CSS---EEEEES-TTTS
T ss_pred ccchhhHhccc---CcceeecCcHhHHHHHHHHhhh---ccc---ceeeecchhcc
Confidence 55664 33332 7999999999999999988764 257 99999999863
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.66 Score=38.53 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=55.0
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC--------CCCCCCCCCcCEEEEccCC
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG--------SKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~--------~~~~~~~~~fD~I~i~~~~ 72 (156)
|-++.+ |+..|. .+|+.+|..+..++.|++ + |.+. +....... .+..-....||..|-....
T Consensus 182 Gl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~----Ga~~---~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~ 252 (354)
T KOG0024|consen 182 GLLTGLVAKAMGA-SDVVITDLVANRLELAKK-F----GATV---TDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA 252 (354)
T ss_pred HHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-h----CCeE---EeeccccccHHHHHHHHHhhccccCCCeEEEccCc
Confidence 445544 566775 899999999999999997 4 4332 22222211 0111112348999988888
Q ss_pred CchHHHHHhhCCCCcEEEEEe
Q psy14971 73 IEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..-.+.....|+.||.++...
T Consensus 253 ~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 253 EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred hHHHHHHHHHhccCCEEEEec
Confidence 766677788999999966654
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.26 Score=41.38 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=59.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGG 87 (156)
...+++++.++.-+.++.+..... +++|. -.++.+|..+...++..||.+.+--.....| .++.+.++|||
T Consensus 133 ~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k--~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 133 KAGVVGLDNNAYEAFRANELAKKA-YLDNK--CNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHH-Hhhhh--cceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCc
Confidence 368999999999999988877663 55443 4458889888777778899998765554444 46788999999
Q ss_pred EEEEEe
Q psy14971 88 RLVFHK 93 (156)
Q Consensus 88 rLv~~~ 93 (156)
..++-.
T Consensus 210 ~~i~~e 215 (364)
T KOG1269|consen 210 LFIVKE 215 (364)
T ss_pred eEEeHH
Confidence 999864
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.041 Score=43.65 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=49.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCC------CchHHHHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAAC------IEVPKEILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~------~~i~~~l~~~L~pG 86 (156)
.+.+++|+|+.|++.|.++=- ++ ++.++|+..-. .+..+||.|...-.. ..+.......|+||
T Consensus 148 ~~ltGvDiS~nMl~kA~eKg~----YD-----~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 148 DRLTGVDISENMLAKAHEKGL----YD-----TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred hhccCCchhHHHHHHHHhccc----hH-----HHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence 578999999999999987621 11 13334443211 234679998875433 33444567899999
Q ss_pred cEEEEEeccCCC
Q psy14971 87 GRLVFHKGLHNG 98 (156)
Q Consensus 87 GrLv~~~~~~~~ 98 (156)
|.+.+.+.+...
T Consensus 219 GlfaFSvE~l~~ 230 (287)
T COG4976 219 GLFAFSVETLPD 230 (287)
T ss_pred ceEEEEecccCC
Confidence 999998865443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=2.5 Score=37.16 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=51.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc---CCCC----C------------CC-C
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD---GSKG----H------------AE-E 60 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD---~~~~----~------------~~-~ 60 (156)
|-.++ .|+.+| +.|+++|++++.++.+++ +|.+. +.+-..+ ...+ . .+ .
T Consensus 177 GL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes-----lGA~~---v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 177 GLAAIGAAGSLG--AIVRAFDTRPEVAEQVES-----MGAEF---LELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-----cCCeE---EEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 33444 355666 489999999999988875 24321 2111111 0000 0 00 1
Q ss_pred CCcCEEEEccCCCc-----h-HHHHHhhCCCCcEEEEEec
Q psy14971 61 GPYDIIHLGAACIE-----V-PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 61 ~~fD~I~i~~~~~~-----i-~~~l~~~L~pGGrLv~~~~ 94 (156)
..+|.+|.++..+. + .+...+.+||||+++..-.
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 35899999987643 3 4678899999999888654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.27 Score=39.58 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.0
Q ss_pred eEEEEccCCCCCC--CCCCcCEEEEccCCC----------------------chHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHA--EEGPYDIIHLGAACI----------------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~--~~~~fD~I~i~~~~~----------------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.++++||+.+... ...+||+|+++.+.. .....+.+.|||||.|++...
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 6789999877422 246899999987631 112356789999999998654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.56 E-value=2 Score=34.93 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
+|+..| .+|++++.+++..+.|++ +|.+. + +. ..+ .....+|.++...+........++.|++|
T Consensus 184 ~a~~~G--~~vi~~~~~~~~~~~a~~-----~Ga~~---v--i~--~~~--~~~~~~d~~i~~~~~~~~~~~~~~~l~~~ 247 (329)
T TIGR02822 184 VALAQG--ATVHVMTRGAAARRLALA-----LGAAS---A--GG--AYD--TPPEPLDAAILFAPAGGLVPPALEALDRG 247 (329)
T ss_pred HHHHCC--CeEEEEeCChHHHHHHHH-----hCCce---e--cc--ccc--cCcccceEEEECCCcHHHHHHHHHhhCCC
Confidence 455554 579999999988766653 36533 2 11 111 11235888776554444555677899999
Q ss_pred cEEEEE
Q psy14971 87 GRLVFH 92 (156)
Q Consensus 87 GrLv~~ 92 (156)
|++++.
T Consensus 248 G~~v~~ 253 (329)
T TIGR02822 248 GVLAVA 253 (329)
T ss_pred cEEEEE
Confidence 999874
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.2 Score=35.91 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=46.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.+++ +|+..|. ..|+++|.+++.++.|++. ..-| . .+ + ....+|.||=..+.....+..+
T Consensus 157 G~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~-----~~i~---~----~~--~---~~~g~Dvvid~~G~~~~~~~~~ 218 (308)
T TIGR01202 157 GRLLARLTKAAGG-SPPAVWETNPRRRDGATGY-----EVLD---P----EK--D---PRRDYRAIYDASGDPSLIDTLV 218 (308)
T ss_pred HHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc-----cccC---h----hh--c---cCCCCCEEEECCCCHHHHHHHH
Confidence 55555 4555552 3477889988877665531 1111 1 00 0 1235899988777665566778
Q ss_pred hhCCCCcEEEEE
Q psy14971 81 AQLKPGGRLVFH 92 (156)
Q Consensus 81 ~~L~pGGrLv~~ 92 (156)
+.|++||++++.
T Consensus 219 ~~l~~~G~iv~~ 230 (308)
T TIGR01202 219 RRLAKGGEIVLA 230 (308)
T ss_pred HhhhcCcEEEEE
Confidence 999999999974
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.52 Score=39.12 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=51.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC--CCchHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA--CIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~--~~~i~~~ 78 (156)
|.+++ .|...| .+|+++|.++.--+.|-+ + +|.+.. +.+. .|....-.-.+..|.++-+.. ..+-.+.
T Consensus 194 Gh~aVq~AKAMG--~rV~vis~~~~kkeea~~---~-LGAd~f--v~~~-~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~ 264 (360)
T KOG0023|consen 194 GHMAVQYAKAMG--MRVTVISTSSKKKEEAIK---S-LGADVF--VDST-EDPDIMKAIMKTTDGGIDTVSNLAEHALEP 264 (360)
T ss_pred chHHHHHHHHhC--cEEEEEeCCchhHHHHHH---h-cCccee--EEec-CCHHHHHHHHHhhcCcceeeeeccccchHH
Confidence 66676 477776 799999999765554444 4 465551 2222 121110011234566666555 4455577
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.||++|.+|+.--+
T Consensus 265 ~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 265 LLGLLKVNGTLVLVGLP 281 (360)
T ss_pred HHHHhhcCCEEEEEeCc
Confidence 89999999999996543
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.2 Score=37.60 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEcc--CCCchHHHHHhhCCCCcEEEEE
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGA--ACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~--~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
+|+.=|++|+.++.+++|++.+ ...+ ..++..|+.....+ ...||.|=++. +...+.+...+.++.||.|-+.
T Consensus 78 ~v~lNDisp~Avelik~Nv~~N-~~~~---~~v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 78 KVVLNDISPKAVELIKENVRLN-SGED---AEVINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred EEEEccCCHHHHHHHHHHHHhc-Cccc---ceeecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 8999999999999999999874 3456 77777887654333 46799998875 2223346777788899999987
Q ss_pred ecc
Q psy14971 93 KGL 95 (156)
Q Consensus 93 ~~~ 95 (156)
..+
T Consensus 154 ATD 156 (380)
T COG1867 154 ATD 156 (380)
T ss_pred ecc
Confidence 653
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.48 Score=41.11 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-------CCCCCCcCEEEEccCCCc-----------
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-------HAEEGPYDIIHLGAACIE----------- 74 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-------~~~~~~fD~I~i~~~~~~----------- 74 (156)
+..+++++|++|++++.|++++.. ..-.+ ..++..|+.+- -++...||+++++-.-..
T Consensus 318 p~~~i~~ve~dP~~l~va~q~f~f-~q~~r---~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~f 393 (482)
T KOG2352|consen 318 PKFQITAVEIDPEMLEVATQYFGF-MQSDR---NKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAF 393 (482)
T ss_pred CccceeEEEEChhHhhccHhhhch-hhhhh---hhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHH
Confidence 457999999999999999999864 22222 45566666431 124578999999764432
Q ss_pred hH----HHHHhhCCCCcEEEEEeccCC
Q psy14971 75 VP----KEILAQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 75 i~----~~l~~~L~pGGrLv~~~~~~~ 97 (156)
+. ......|.|-|.+++...+.+
T Consensus 394 va~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 394 VAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred HHHHHHHHHhhccCccceEEEEEecCC
Confidence 11 134678999999999876543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.6 Score=35.56 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC---CchHHHHHhhCCCCcEEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC---IEVPKEILAQLKPGGRLVF 91 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~---~~i~~~l~~~L~pGGrLv~ 91 (156)
.+|+++|.+++.++.|++ + +. ...+ .+ +.+...+|.||=..+- +...+...+.|++||++++
T Consensus 190 ~~vi~~~~~~~k~~~a~~-~----~~-----~~~~-~~----~~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 190 SKLVVFGKHQEKLDLFSF-A----DE-----TYLI-DD----IPEDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CcEEEEeCcHhHHHHHhh-c----Cc-----eeeh-hh----hhhccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 689999999998888864 2 21 1111 11 1112248999865552 2334566889999999987
Q ss_pred E
Q psy14971 92 H 92 (156)
Q Consensus 92 ~ 92 (156)
.
T Consensus 255 ~ 255 (341)
T cd08237 255 M 255 (341)
T ss_pred E
Confidence 5
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.61 Score=36.45 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEEccCCCCCCCCCCcCEEEEccCCC--chH---HHHHhhCCCCcEEEEEecc
Q psy14971 48 VSVKDGSKGHAEEGPYDIIHLGAACI--EVP---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 48 ~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~---~~l~~~L~pGGrLv~~~~~ 95 (156)
++.+|.....-+++..|+++.+-++- +.+ .+..+.|||||.|.+....
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 56688765434567899999987764 444 4668899999999998654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.4 Score=30.82 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=40.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~ 70 (156)
|+-++--.+.|. .+|+++|.++.+.+..++|++.+ .+-+ .+-+...|+ .-++||...++.
T Consensus 40 GdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~n-nI~D-------K~v~~~eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 40 GSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYF-NICD-------KAVMKGEWNGEYEDVDIFVMDC 100 (156)
T ss_pred cchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhh-eeee-------ceeecccccccCCCcceEEEEc
Confidence 555555445554 79999999999999999999863 3211 112222344 358999999986
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.2 Score=38.57 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=59.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---------CCCCCCcCEEEEcc-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---------HAEEGPYDIIHLGA- 70 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---------~~~~~~fD~I~i~~- 70 (156)
.|-|+.||...|. -.|+|+|.-..|++.|++-..++ |.+.+ |+++.--..+. ....+-||.=+++-
T Consensus 77 TGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn-g~Sdk--I~vInkrStev~vg~~~RadI~v~e~fdtEligeG 152 (636)
T KOG1501|consen 77 TGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN-GMSDK--INVINKRSTEVKVGGSSRADIAVREDFDTELIGEG 152 (636)
T ss_pred ccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC-CCccc--eeeeccccceeeecCcchhhhhhHhhhhhhhhccc
Confidence 4889999988884 67999999999999999998886 76433 77776443331 11123466544443
Q ss_pred CCCchHHHHHhhCCCCcEEEE
Q psy14971 71 ACIEVPKEILAQLKPGGRLVF 91 (156)
Q Consensus 71 ~~~~i~~~l~~~L~pGGrLv~ 91 (156)
+.+.+..+.-.+|++|.+.|=
T Consensus 153 alps~qhAh~~L~~~nc~~VP 173 (636)
T KOG1501|consen 153 ALPSLQHAHDMLLVDNCKTVP 173 (636)
T ss_pred cchhHHHHHHHhcccCCeecc
Confidence 566666666667777777654
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.51 Score=38.85 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=53.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---chHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---EVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~i~~ 77 (156)
||+++ ..-..| ...|+++|.+|..++.-|++++.+ ++..+ -.++.||....-+ ...-|+|.++--.+ .-|
T Consensus 206 GYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N-~V~~r--~~i~~gd~R~~~~-~~~AdrVnLGLlPSse~~W~- 279 (351)
T KOG1227|consen 206 GYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEAN-NVMDR--CRITEGDNRNPKP-RLRADRVNLGLLPSSEQGWP- 279 (351)
T ss_pred ceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhc-chHHH--HHhhhccccccCc-cccchheeeccccccccchH-
Confidence 66665 222223 368999999999999999999875 43221 4566777665333 35679999975332 122
Q ss_pred HHHhhCCC-Cc-EEEE
Q psy14971 78 EILAQLKP-GG-RLVF 91 (156)
Q Consensus 78 ~l~~~L~p-GG-rLv~ 91 (156)
.....|+| || +|-+
T Consensus 280 ~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 280 TAIKALKPEGGSILHI 295 (351)
T ss_pred HHHHHhhhcCCcEEEE
Confidence 34567777 55 4444
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=87.40 E-value=3.1 Score=34.93 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHhcCCC-CEEEEEeCCHHHHHHHHHHHhhhc---CCCCccceEEEEc----cCCCC---CCCCCCcCEEEEccCCCch
Q psy14971 7 IVGIKGER-ALVLILNHYMKVKSKNQNNKKLNI---KQNRKSFKNVSVK----DGSKG---HAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 7 la~l~g~~-g~V~avD~~~~~~~~A~~~l~~~~---g~~n~~~v~~~~g----D~~~~---~~~~~~fD~I~i~~~~~~i 75 (156)
+|+..|.+ .+|+++|.+++.++.|++.+...- |.+ ..++.. +..+. ......+|.++...+....
T Consensus 195 ~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~----~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~ 270 (410)
T cd08238 195 YAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE----LLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPEL 270 (410)
T ss_pred HHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce----EEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHH
Confidence 34454422 479999999999999987532100 211 112211 10000 1122359999987655455
Q ss_pred HHHHHhhCCCCcEEEEEec
Q psy14971 76 PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~ 94 (156)
.....+.|+++|++++..+
T Consensus 271 ~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 271 VEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHHHHhccCCeEEEEEc
Confidence 5566889999998877654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=87.02 E-value=0.54 Score=37.67 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=31.6
Q ss_pred EEEEccCCCCCCCC-----C-CcCEEEEccCCC----chH------HHHHhhCCCCcEEEEEecc
Q psy14971 47 NVSVKDGSKGHAEE-----G-PYDIIHLGAACI----EVP------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 47 ~~~~gD~~~~~~~~-----~-~fD~I~i~~~~~----~i~------~~l~~~L~pGGrLv~~~~~ 95 (156)
.++..|..+.-+-. . +||+|++...+. ... ..+.++|||||.|++....
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 37778887643221 2 499999876543 322 3678999999999997653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=86.71 E-value=0.92 Score=36.61 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=34.3
Q ss_pred eEEEEccCCCCCCCC---CCcCEEEEccCC---Cch---HHHHHhhCCCCcEEEEEecc
Q psy14971 46 KNVSVKDGSKGHAEE---GPYDIIHLGAAC---IEV---PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 46 v~~~~gD~~~~~~~~---~~fD~I~i~~~~---~~i---~~~l~~~L~pGGrLv~~~~~ 95 (156)
+++..||..+..... +.||+|+...=. +++ -+.+.+.||||| +.+.+|+
T Consensus 146 ~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 146 LSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred eeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 777888887765544 789999886532 233 357789999999 5555653
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.31 E-value=5.3 Score=34.84 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=47.0
Q ss_pred chHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCC-CC----CCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGE---RALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKG-HA----EEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~---~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~-~~----~~~~fD~I~i~~~~ 72 (156)
|.|...+..++. ....++.|+++.....|+.|+--+ |.+ + +....+|.... .. ....||.|+.+.+.
T Consensus 199 g~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~~---~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 199 GMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEGD---ANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred HHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCcc---ccccccccccCCcccccCCccceeEEEeCCCC
Confidence 444445556653 367999999999999999999775 664 4 56777775432 22 23679999987654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.5 Score=34.61 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=48.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+..|. .+|+++|.+++..+.|++ +|.+. + +-..+..+. ......+|.++-..+.....+
T Consensus 133 G~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~-----~Ga~~---~-i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~ 202 (280)
T TIGR03366 133 GLTAAAAAAAAGA-ARVVAADPSPDRRELALS-----FGATA---L-AEPEVLAERQGGLQNGRGVDVALEFSGATAAVR 202 (280)
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-----cCCcE---e-cCchhhHHHHHHHhCCCCCCEEEECCCChHHHH
Confidence 34443 3555552 359999999988877764 24322 1 111110000 111235899988766555556
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
...+.|+++|+++..-
T Consensus 203 ~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 203 ACLESLDVGGTAVLAG 218 (280)
T ss_pred HHHHHhcCCCEEEEec
Confidence 6788999999999854
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=85.44 E-value=3.4 Score=35.97 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=55.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch----------------HH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV----------------PK 77 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i----------------~~ 77 (156)
...|+.+|+++-.++.....-.+ .... ..+...|.....-+.++||+++.-+....+ ..
T Consensus 71 ~~dI~~iD~S~V~V~~m~~~~~~--~~~~---~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~ 145 (482)
T KOG2352|consen 71 FEDITNIDSSSVVVAAMQVRNAK--ERPE---MQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLD 145 (482)
T ss_pred CCCceeccccHHHHHHHHhcccc--CCcc---eEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHh
Confidence 45799999999999888866533 2233 889999998766677889998886654322 13
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
...+.|++||+.+...-
T Consensus 146 eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 146 EVSRVLAPGGKYISVTL 162 (482)
T ss_pred hHHHHhccCCEEEEEEe
Confidence 45789999999776543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.8 Score=33.57 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=34.1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC----CCCC-CCCCcCEEEEccCCCch
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS----KGHA-EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~----~~~~-~~~~fD~I~i~~~~~~i 75 (156)
+=+++|.|+|+..++.|++|++++-++.++ |+++.-+-. .+.. ....||...++.+...-
T Consensus 126 ~W~fvaTdID~~sl~~A~~nv~~N~~L~~~--I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 126 GWSFVATDIDPKSLESARENVERNPNLESR--IELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHT-T-TTT--EEEEE--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred CCeEEEecCCHHHHHHHHHHHHhccccccc--eEEEEcCCccccchhhhcccceeeEEecCCccccC
Confidence 469999999999999999999874134444 888865432 2221 23579999998776543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.59 E-value=0.24 Score=34.68 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=21.2
Q ss_pred CcCEEEEccCCC------------chHHHHHhhCCCCcEEEEEe
Q psy14971 62 PYDIIHLGAACI------------EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 62 ~fD~I~i~~~~~------------~i~~~l~~~L~pGGrLv~~~ 93 (156)
.||.|++-...- .+...+.++|+|||+|++--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 378887744322 23356788999999999953
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=84.47 E-value=5.2 Score=32.08 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=37.7
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
+...+++++|.++.|++.++.-++.. ..... ... ..+......+..+.|.|++...+.++++
T Consensus 56 ~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~~--~~~-~~~~~~~~~~~~~~DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 56 PSLKEYTCVDRSPEMLELAKRLLRAG-PNNRN--AEW-RRVLYRDFLPFPPDDLVIASYVLNELPS 117 (274)
T ss_pred cCceeeeeecCCHHHHHHHHHHHhcc-ccccc--chh-hhhhhcccccCCCCcEEEEehhhhcCCc
Confidence 34578999999999999999877652 21110 111 1111111122234599999998877663
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.19 E-value=2.6 Score=32.11 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-----CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-----HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-----~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
++...| .+|++++.+++..+.+++. +... ++....... .....++|.++...+.........+
T Consensus 153 ~a~~~g--~~v~~~~~~~~~~~~~~~~-----g~~~-----~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~ 220 (271)
T cd05188 153 LAKAAG--ARVIVTDRSDEKLELAKEL-----GADH-----VIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALR 220 (271)
T ss_pred HHHHcC--CeEEEEcCCHHHHHHHHHh-----CCce-----eccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHH
Confidence 344444 7899999998877766432 3211 111010000 1123579999987765455667788
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.|+++|+++..-.
T Consensus 221 ~l~~~G~~v~~~~ 233 (271)
T cd05188 221 LLRPGGRIVVVGG 233 (271)
T ss_pred hcccCCEEEEEcc
Confidence 9999999998543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=83.51 E-value=5.1 Score=31.86 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC-C--CCCCCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS-K--GHAEEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~-~--~~~~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|++++.+++..+.+++ +|.+. +-....+.. + .......+|.++-........+...+.|
T Consensus 184 la~~~G--~~V~~~~~s~~~~~~~~~-----~g~~~---~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l 253 (338)
T cd08254 184 IAKAMG--AAVIAVDIKEEKLELAKE-----LGADE---VLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAV 253 (338)
T ss_pred HHHHcC--CEEEEEcCCHHHHHHHHH-----hCCCE---EEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHh
Confidence 455554 579999999988877643 24322 111110000 0 0112356998887655555566778999
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
+++|+++..
T Consensus 254 ~~~G~~v~~ 262 (338)
T cd08254 254 KPGGRIVVV 262 (338)
T ss_pred hcCCEEEEE
Confidence 999999985
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=0.99 Score=35.29 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=31.1
Q ss_pred eEEEEccCCCCCC--CCCCcCEEEEccCCC---------------------chHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHA--EEGPYDIIHLGAACI---------------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~--~~~~fD~I~i~~~~~---------------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.++++||+.+... ++.++|+|+.+.+.. ..-.++.+.|||||.+++...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 4577788765432 246688888875431 011345689999999987544
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=81.96 E-value=9.2 Score=30.36 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCCc
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGG 87 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pGG 87 (156)
|+..| .+|++++.+++..+.+++ + |.+. +.....+ .....+|.++-..+.....+...+.|+++|
T Consensus 175 a~~~G--~~vi~~~~~~~~~~~~~~-~----g~~~---~~~~~~~-----~~~~~~d~vid~~g~~~~~~~~~~~l~~~g 239 (319)
T cd08242 175 LALTG--PDVVLVGRHSEKLALARR-L----GVET---VLPDEAE-----SEGGGFDVVVEATGSPSGLELALRLVRPRG 239 (319)
T ss_pred HHHcC--CeEEEEcCCHHHHHHHHH-c----CCcE---EeCcccc-----ccCCCCCEEEECCCChHHHHHHHHHhhcCC
Confidence 44454 568999988888777764 2 4322 1111111 223569999987655444556678899999
Q ss_pred EEEE
Q psy14971 88 RLVF 91 (156)
Q Consensus 88 rLv~ 91 (156)
+++.
T Consensus 240 ~~v~ 243 (319)
T cd08242 240 TVVL 243 (319)
T ss_pred EEEE
Confidence 9997
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=81.58 E-value=3.2 Score=33.39 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=44.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc--CCC---CCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD--GSK---GHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD--~~~---~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..|. .+|++++.+++..+.+++.+ |.+. + +...+ ..+ ... ...+|.|+-..+... ....++
T Consensus 174 lAk~~G~-~~Vi~~~~s~~~~~~~~~~l----Ga~~---v-i~~~~~~~~~~i~~~~-~~gvd~vid~~g~~~-~~~~~~ 242 (345)
T cd08293 174 IGRLLGC-SRVVGICGSDEKCQLLKSEL----GFDA---A-INYKTDNVAERLRELC-PEGVDVYFDNVGGEI-SDTVIS 242 (345)
T ss_pred HHHHcCC-CEEEEEcCCHHHHHHHHHhc----CCcE---E-EECCCCCHHHHHHHHC-CCCceEEEECCCcHH-HHHHHH
Confidence 4555542 27999999988777776543 4432 1 11111 000 011 145999986555433 356788
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 243 ~l~~~G~iv~~ 253 (345)
T cd08293 243 QMNENSHIILC 253 (345)
T ss_pred HhccCCEEEEE
Confidence 99999999974
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=81.58 E-value=5.7 Score=31.79 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=42.1
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
...+...++|+|||..+++....-+.. ++. + .++...|.....+ ..+.|..++-=..+
T Consensus 125 ~~~~~a~Y~a~DID~~~ve~l~~~l~~-l~~-~---~~~~v~Dl~~~~~-~~~~DlaLllK~lp 182 (251)
T PF07091_consen 125 PEAPGATYIAYDIDSQLVEFLNAFLAV-LGV-P---HDARVRDLLSDPP-KEPADLALLLKTLP 182 (251)
T ss_dssp TSSTT-EEEEEESBHHHHHHHHHHHHH-TT--C---EEEEEE-TTTSHT-TSEESEEEEET-HH
T ss_pred ccCCCcEEEEEeCCHHHHHHHHHHHHh-hCC-C---cceeEeeeeccCC-CCCcchhhHHHHHH
Confidence 344567999999999999999999988 675 4 7888889876533 45689999865444
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=81.15 E-value=7.4 Score=30.57 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=61.3
Q ss_pred chHHHHHHh--cCCCCEEEEEeCCHHHHHHHHHHHhhhcC-------CCCccceEEEEccCCCCCCC---CCCcCEEEEc
Q psy14971 2 GDLNVIVGI--KGERALVLILNHYMKVKSKNQNNKKLNIK-------QNRKSFKNVSVKDGSKGHAE---EGPYDIIHLG 69 (156)
Q Consensus 2 G~la~la~l--~g~~g~V~avD~~~~~~~~A~~~l~~~~g-------~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~ 69 (156)
||-.++-++ .-|...+++.||.....+..+++++. ++ +.| +.+...++..-.+. .+..+.+|..
T Consensus 70 GyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A-LR~~~a~~~~~n---i~vlr~namk~lpn~f~kgqLskmff~ 145 (249)
T KOG3115|consen 70 GYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA-LRRTSAEGQYPN---ISVLRTNAMKFLPNFFEKGQLSKMFFL 145 (249)
T ss_pred CccchhhhccccCccceeeeehhhHHHHHHHHHHHHH-Hhcccccccccc---ceeeeccchhhccchhhhcccccceee
Confidence 444444433 24678999999999999999999877 44 567 88998888764443 3455555555
Q ss_pred cCCCc--------------hHHHHHhhCCCCcEEEEEec
Q psy14971 70 AACIE--------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 70 ~~~~~--------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+-++ +.....-.|++||.++....
T Consensus 146 fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 146 FPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 44332 22345668999999998754
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.10 E-value=10 Score=31.66 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=69.9
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc----CC-Cc-hHHHHHhhCCC
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA----AC-IE-VPKEILAQLKP 85 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~----~~-~~-i~~~l~~~L~p 85 (156)
|-++.|+-+|++.+.++....-+ + .+ +..+..+....-..-...|.++-.- +. +. +.++...++||
T Consensus 189 glgA~Vtild~n~~rl~~ldd~f----~-~r---v~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~Mkp 260 (371)
T COG0686 189 GLGADVTILDLNIDRLRQLDDLF----G-GR---VHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKP 260 (371)
T ss_pred ccCCeeEEEecCHHHHhhhhHhh----C-ce---eEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCC
Confidence 44689999999999886655443 2 13 5655554332111224567665432 22 22 34678899999
Q ss_pred CcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCcc
Q psy14971 86 GGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLK 134 (156)
Q Consensus 86 GGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~ 134 (156)
|..+|=+..+.++ .-+-...|-+.+.+|....+..-....+++...+.
T Consensus 261 GsVivDVAiDqGG-c~Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVprT 308 (371)
T COG0686 261 GSVIVDVAIDQGG-CFETSHPTTHDDPTYEVDGVVHYGVANMPGAVPRT 308 (371)
T ss_pred CcEEEEEEEcCCC-ceeccccccCCCCceeecCEEEEecCCCCccccch
Confidence 9999887766654 33333555555666777777766666677655443
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=80.83 E-value=9.2 Score=30.59 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc---CCCCC--CCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD---GSKGH--AEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD---~~~~~--~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| .+|++++.+++..+.+++ +|.+. + +-..+ ..+.. .....+|.++-..+-. .....++
T Consensus 158 lAk~~G--~~Vi~~~~s~~~~~~~~~-----lGa~~---v-i~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~-~~~~~~~ 225 (325)
T TIGR02825 158 IAKLKG--CKVVGAAGSDEKVAYLKK-----LGFDV---A-FNYKTVKSLEETLKKASPDGYDCYFDNVGGE-FSNTVIG 225 (325)
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHH-----cCCCE---E-EeccccccHHHHHHHhCCCCeEEEEECCCHH-HHHHHHH
Confidence 455555 589999999887777643 35432 1 11111 00000 0123589988655543 3466788
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|+++|+++..
T Consensus 226 ~l~~~G~iv~~ 236 (325)
T TIGR02825 226 QMKKFGRIAIC 236 (325)
T ss_pred HhCcCcEEEEe
Confidence 99999999975
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=80.69 E-value=2.7 Score=34.66 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=46.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchHHHHHhhCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVPKEILAQLK 84 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~~~l~~~L~ 84 (156)
+|+..|. .+|+++|.+++..+.|++ +|.+.- +.....|..+... ..+.+|.||-..+........++.|+
T Consensus 210 lak~~G~-~~Vi~~~~~~~r~~~a~~-----~Ga~~~--i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~ 281 (371)
T cd08281 210 GAVAAGA-SQVVAVDLNEDKLALARE-----LGATAT--VNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITR 281 (371)
T ss_pred HHHHcCC-CcEEEEcCCHHHHHHHHH-----cCCceE--eCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHh
Confidence 3555542 369999999998887753 354220 1110011100000 01258999876655555556788999
Q ss_pred CCcEEEEEe
Q psy14971 85 PGGRLVFHK 93 (156)
Q Consensus 85 pGGrLv~~~ 93 (156)
++|+++..-
T Consensus 282 ~~G~iv~~G 290 (371)
T cd08281 282 RGGTTVTAG 290 (371)
T ss_pred cCCEEEEEc
Confidence 999998753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.04 E-value=11 Score=30.77 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=44.7
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-c-cCCCCCC--CCCCcCEEEEccCCCchHHHHHhh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-K-DGSKGHA--EEGPYDIIHLGAACIEVPKEILAQ 82 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-g-D~~~~~~--~~~~fD~I~i~~~~~~i~~~l~~~ 82 (156)
+|+..| .+|++++.+++..+.+++. +|.+. +--.. . +..+... ....+|.++-..+. ......++.
T Consensus 178 lAk~~G--~~Vi~~~~~~~k~~~~~~~----lGa~~---vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~ 247 (348)
T PLN03154 178 LAKLHG--CYVVGSAGSSQKVDLLKNK----LGFDE---AFNYKEEPDLDAALKRYFPEGIDIYFDNVGG-DMLDAALLN 247 (348)
T ss_pred HHHHcC--CEEEEEcCCHHHHHHHHHh----cCCCE---EEECCCcccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHH
Confidence 456665 5799999999877776543 34432 11111 1 1111000 11358988865553 344567889
Q ss_pred CCCCcEEEEE
Q psy14971 83 LKPGGRLVFH 92 (156)
Q Consensus 83 L~pGGrLv~~ 92 (156)
|++||+++..
T Consensus 248 l~~~G~iv~~ 257 (348)
T PLN03154 248 MKIHGRIAVC 257 (348)
T ss_pred hccCCEEEEE
Confidence 9999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 156 | ||||
| 1i1n_A | 226 | Human Protein L-Isoaspartate O-Methyltransferase Wi | 4e-10 | ||
| 1r18_A | 227 | Drosophila Protein Isoaspartyl Methyltransferase Wi | 3e-06 | ||
| 1jg4_A | 235 | Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- | 5e-05 |
| >pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226 | Back alignment and structure |
|
| >pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-20
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 35 KLNIKQNRKS---FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRL 89
N++++ + V + DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL
Sbjct: 119 VNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRL 178
Query: 90 VFHKGLHNGHYQSLAYIDRLPNGTYLREK 118
+ G G+ Q L D+L +G+ +
Sbjct: 179 ILPVGPAGGN-QMLEQYDKLQDGSIKMKP 206
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 6e-20
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 44 SFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQ 101
+ + DG KG+ PY+ IH+GAA + P E++ QL GGRL+ G G Q
Sbjct: 143 DSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGS-Q 201
Query: 102 SLAYIDRLPNGTYLREK 118
+ D+ NG +
Sbjct: 202 YMQQYDKDANGKVEMTR 218
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 4e-19
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 39 KQNRKSFKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96
+ + N+ + DG+ G+ EE PYD + + A + + QLK GG ++ G
Sbjct: 109 SKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG-- 166
Query: 97 NGHYQSLAYIDRLPNG 112
G Q L + + N
Sbjct: 167 VGRVQKLYKVIKKGNS 182
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-18
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
KNV V DGSKG + PYD+I + A ++P+ ++ QLK GG+L+ G ++ +Q
Sbjct: 139 VKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHL-WQE 197
Query: 103 LAYIDRLPNG 112
L + + +G
Sbjct: 198 LLEVRKTKDG 207
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 9e-18
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+ NV V DG+ G+ PYD I+ AA ++P+ ++ QLK GG+L+ G + Q
Sbjct: 127 YDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG---RYLQR 183
Query: 103 LAYIDRLPNG 112
L ++ +
Sbjct: 184 LVLAEKRGDE 193
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-17
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
+NV DG G E PYD+I + EVP+ QLK GGR++ L +
Sbjct: 125 IENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK-LSRRQ 183
Query: 103 LAYIDRLPNGTYLREKSG 120
A++ + + +
Sbjct: 184 PAFLFKKKDPYLVGNYKL 201
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-16
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 45 FKNVSVK--DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQS 102
NVS + DG +G P+D I + AA E+P ++ QL GG LV G +Q
Sbjct: 124 LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVG---EEHQY 180
Query: 103 LAYIDRLPNG 112
L + R
Sbjct: 181 LKRVRRRGGE 190
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-16
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 35 KLNIKQNRKS---FKNVSVK------DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85
NIK+++ N + + E G +D IH+GA+ E+P+ ++ L
Sbjct: 126 LENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAE 185
Query: 86 GGRLVFHKGLHNGHYQSLAYIDRLPNG 112
G+L+ + Q L I +
Sbjct: 186 NGKLIIPIE--EDYTQVLYEITKKNGK 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 156 | |||
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.74 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.74 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.74 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.73 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.71 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.69 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.58 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.52 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.44 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.39 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.34 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.32 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.3 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.28 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.25 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.23 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.22 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.21 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.21 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.2 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.19 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.16 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.16 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.16 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.15 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.15 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.13 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.13 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.12 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.11 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.1 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.1 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.1 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.09 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.09 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.09 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.09 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.08 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.08 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.08 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.07 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.07 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.07 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.07 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.06 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.06 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.06 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.06 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.05 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.04 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.04 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.04 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.03 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.03 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.02 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.02 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.01 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.01 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.01 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.0 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.0 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.0 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.99 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.99 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.99 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.98 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.98 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.98 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.98 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.97 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.97 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.96 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.95 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.94 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.94 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.94 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.94 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.93 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.92 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.92 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.92 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.92 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.91 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.91 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.91 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.9 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.9 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.89 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.89 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.89 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.89 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.88 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.88 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.88 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.87 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.86 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.86 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.86 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.85 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.84 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.84 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.84 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.83 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.82 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.82 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.82 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.82 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.82 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.81 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.81 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.8 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.8 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.8 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.8 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.8 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.8 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.79 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.79 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.79 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.79 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.78 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.78 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.78 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.78 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.78 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.77 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.76 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.76 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.76 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.76 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.76 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.75 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.75 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.75 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.74 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.74 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.74 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.73 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.73 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.72 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.72 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.71 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.71 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.71 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.7 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.7 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.7 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.7 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.7 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.7 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.7 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.69 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.69 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.69 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.69 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.69 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.68 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.68 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.68 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.67 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.67 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.67 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.67 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.66 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.66 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.66 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.65 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.65 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.65 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.64 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.64 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.64 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.63 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.63 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.63 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.63 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.62 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.61 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.6 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.59 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.59 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.59 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.59 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.58 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.58 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.58 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.58 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.57 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.57 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.57 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.56 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.56 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.55 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.55 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.52 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.51 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.51 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.5 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.5 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.49 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.47 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.47 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.47 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.46 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.44 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.43 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.42 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.42 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.41 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.41 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.39 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.38 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.36 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.35 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.34 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.34 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.3 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.29 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.27 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.27 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.24 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.24 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.21 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.21 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.2 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.18 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.18 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.18 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.17 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.17 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.16 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.15 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.14 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.13 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.11 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.1 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.08 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.08 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.08 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.0 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 97.99 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.96 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.88 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.87 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.81 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.8 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.8 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.79 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.78 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.78 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 97.76 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.71 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.67 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.61 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.59 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.57 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.56 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.48 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.46 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.45 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.41 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.34 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 97.33 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.28 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.16 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.16 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 97.13 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.0 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.63 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 96.41 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 96.29 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 96.13 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.07 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.0 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.86 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 95.58 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 95.52 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.48 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.35 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 93.7 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 93.59 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 93.49 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.92 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.89 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.82 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.75 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.67 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.6 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.5 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.3 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.22 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.2 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.72 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.61 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.45 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.34 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 91.07 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.84 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.65 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 90.6 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.55 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 90.41 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 90.3 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.02 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.0 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 89.96 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 89.93 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.69 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.64 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.54 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 89.44 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.84 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 88.76 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.49 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 88.43 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 88.07 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 88.06 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 88.02 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 87.86 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.79 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.21 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 87.03 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 86.85 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 86.84 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 86.81 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 86.67 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.58 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.18 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 85.92 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 85.9 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.84 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 85.83 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 85.65 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 85.48 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 85.24 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 85.1 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 84.84 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 84.79 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.74 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 84.62 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 84.38 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 84.31 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 84.22 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 84.19 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 83.89 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 83.82 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 83.21 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 83.15 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 83.06 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 81.94 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 81.34 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 81.1 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 80.87 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 80.74 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 80.52 |
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-18 Score=129.10 Aligned_cols=121 Identities=26% Similarity=0.391 Sum_probs=103.5
Q ss_pred chHHH-HHHhcCC-----CCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCCCCCCCcCEEEEcc
Q psy14971 2 GDLNV-IVGIKGE-----RALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~-la~l~g~-----~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~ 70 (156)
|+++. +++..+. .++|+++|+++++++.|+++++.. + ..| ++++.+|+.+.++..++||+|+++.
T Consensus 96 G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~---v~~~~~d~~~~~~~~~~fD~I~~~~ 171 (227)
T 1r18_A 96 GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD-DRSMLDSGQ---LLIVEGDGRKGYPPNAPYNAIHVGA 171 (227)
T ss_dssp SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH-HHHHHHHTS---EEEEESCGGGCCGGGCSEEEEEECS
T ss_pred cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc-CccccCCCc---eEEEECCcccCCCcCCCccEEEECC
Confidence 66665 4555553 469999999999999999999873 5 567 9999999987666557899999999
Q ss_pred CCCchHHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeec
Q psy14971 71 ACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPL 127 (156)
Q Consensus 71 ~~~~i~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL 127 (156)
+.+++++.+.++|||||+|++++..... .+.+..++|..++.++.+.++.+.|+||
T Consensus 172 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~p~ 227 (227)
T 1r18_A 172 AAPDTPTELINQLASGGRLIVPVGPDGG-SQYMQQYDKDANGKVEMTRLMGVMYVPL 227 (227)
T ss_dssp CBSSCCHHHHHTEEEEEEEEEEESCSSS-CEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred chHHHHHHHHHHhcCCCEEEEEEecCCC-ceEEEEEEEcCCCcEEEEEeccEEEeeC
Confidence 9999999999999999999999986444 5888899997677899999999999996
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=123.47 Aligned_cols=119 Identities=23% Similarity=0.268 Sum_probs=104.0
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.++.. ++. .++|+++|+++++++.|+++++. .+++| ++++.+|+.+.....++||+|+++...+.+++.+.
T Consensus 89 G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~ 161 (210)
T 3lbf_A 89 GYQTAILAHL---VQHVCSVERIKGLQWQARRRLKN-LDLHN---VSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALM 161 (210)
T ss_dssp SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEESCGGGCCGGGCCEEEEEESSBCSSCCTHHH
T ss_pred CHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH-cCCCc---eEEEECCcccCCccCCCccEEEEccchhhhhHHHH
Confidence 667654 444 48999999999999999999998 48888 99999999887666789999999999999999999
Q ss_pred hhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCC
Q psy14971 81 AQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLI 131 (156)
Q Consensus 81 ~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~ 131 (156)
++|||||+|++++++ + .+.+..++|. ++.+..+.++.+.|+||.++.
T Consensus 162 ~~L~pgG~lv~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~f~pl~~~~ 208 (210)
T 3lbf_A 162 TQLDEGGILVLPVGE-E--HQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGE 208 (210)
T ss_dssp HTEEEEEEEEEEECS-S--SCEEEEEEEE-TTEEEEEEEEECCCCBCCCSS
T ss_pred HhcccCcEEEEEEcC-C--ceEEEEEEEc-CCeEEEEEeccEEEEEccCcc
Confidence 999999999999987 3 4788888886 567999999999999998864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=125.47 Aligned_cols=124 Identities=35% Similarity=0.505 Sum_probs=105.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i 75 (156)
|.++. +++..++.++|+++|+++++++.|+++++.. + .++ ++++.+|+.......++||+|+++..++++
T Consensus 89 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~---v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 164 (226)
T 1i1n_A 89 GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSGR---VQLVVGDGRMGYAEEAPYDAIHVGAAAPVV 164 (226)
T ss_dssp SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CTHHHHTSS---EEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-cccccCCCc---EEEEECCcccCcccCCCcCEEEECCchHHH
Confidence 66665 5667777789999999999999999999873 5 357 999999987655556789999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCC
Q psy14971 76 PKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGL 130 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~ 130 (156)
++.+.++|||||+|++++++... .+.+..+++..++.++.+.++.+.|+|+.+.
T Consensus 165 ~~~~~~~LkpgG~lv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~ 218 (226)
T 1i1n_A 165 PQALIDQLKPGGRLILPVGPAGG-NQMLEQYDKLQDGSIKMKPLMGVIYVPLTDK 218 (226)
T ss_dssp CHHHHHTEEEEEEEEEEESCTTS-CEEEEEEEECTTSCEEEEEEEEECCCBCCCH
T ss_pred HHHHHHhcCCCcEEEEEEecCCC-ceEEEEEEEcCCCcEEEEEcCceEEEeccCC
Confidence 99999999999999999987544 4667778887677899999999999999874
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=125.27 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=106.7
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|+++.. ++..+ ++|+++|+++++++.|+++++. .++.+ ++++.+|+...++...+||+|+++.+.+.+++.+
T Consensus 102 ~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~ 175 (235)
T 1jg1_A 102 SGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER-AGVKN---VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPL 175 (235)
T ss_dssp TSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHH
T ss_pred cCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH-cCCCC---cEEEECCcccCCCCCCCccEEEECCcHHHHHHHH
Confidence 3667754 45544 8999999999999999999998 48888 9999999866666656799999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKE 135 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~ 135 (156)
.++|+|||+|+++++.... .+.+..++|. ++.+..+.++.+.|+|+.+..++++
T Consensus 176 ~~~L~pgG~lvi~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~f~p~~~~~~~~~ 229 (235)
T 1jg1_A 176 IEQLKIGGKLIIPVGSYHL-WQELLEVRKT-KDGIKIKNHGGVAFVPLIGEYGWKE 229 (235)
T ss_dssp HHTEEEEEEEEEEECSSSS-CEEEEEEEEE-TTEEEEEEEEEECCCBCBSTTSBC-
T ss_pred HHhcCCCcEEEEEEecCCC-ccEEEEEEEe-CCeEEEEEeccEEEEEccCCCcchh
Confidence 9999999999999986542 3778888885 6679999999999999998876654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=124.15 Aligned_cols=121 Identities=22% Similarity=0.240 Sum_probs=102.9
Q ss_pred chHHH-HHHhcC----CCCEEEEEeCCHHHHHHHHHHHhhhcC-----CCCccceEEEEccCCCCC----CCCCCcCEEE
Q psy14971 2 GDLNV-IVGIKG----ERALVLILNHYMKVKSKNQNNKKLNIK-----QNRKSFKNVSVKDGSKGH----AEEGPYDIIH 67 (156)
Q Consensus 2 G~la~-la~l~g----~~g~V~avD~~~~~~~~A~~~l~~~~g-----~~n~~~v~~~~gD~~~~~----~~~~~fD~I~ 67 (156)
|+++. +++..+ +.++|+++|+++++++.|+++++.. + ..| ++++.+|+.+.+ ...++||+|+
T Consensus 92 G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~---v~~~~~d~~~~~~~~~~~~~~fD~I~ 167 (227)
T 2pbf_A 92 GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD-KPELLKIDN---FKIIHKNIYQVNEEEKKELGLFDAIH 167 (227)
T ss_dssp SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGSSTT---EEEEECCGGGCCHHHHHHHCCEEEEE
T ss_pred CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc-CccccccCC---EEEEECChHhcccccCccCCCcCEEE
Confidence 66665 466665 6789999999999999999999884 7 567 999999998765 4457899999
Q ss_pred EccCCCchHHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCC
Q psy14971 68 LGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGG 129 (156)
Q Consensus 68 i~~~~~~i~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~ 129 (156)
+++..+++++.+.++|+|||+|++++.... .+.+..++| .++.|..+.++.+.|+||.+
T Consensus 168 ~~~~~~~~~~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~ 226 (227)
T 2pbf_A 168 VGASASELPEILVDLLAENGKLIIPIEEDY--TQVLYEITK-KNGKIIKDRLFDVCFVSLKK 226 (227)
T ss_dssp ECSBBSSCCHHHHHHEEEEEEEEEEEEETT--EEEEEEEEC-SCC-CEEEEEEEECCCBCCC
T ss_pred ECCchHHHHHHHHHhcCCCcEEEEEEccCC--ceEEEEEEE-eCCeEEEEEeccEEEEeccC
Confidence 999999999999999999999999998643 478888888 56789999999999999975
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=117.08 Aligned_cols=124 Identities=26% Similarity=0.344 Sum_probs=105.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.++. +++..++.++|+++|+++++++.|++++.. .+.++ ++++.+|+...++..++||+|+++...+++++.+.
T Consensus 89 G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~ 164 (215)
T 2yxe_A 89 GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-LGYDN---VIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLI 164 (215)
T ss_dssp SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-HTCTT---EEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHH
T ss_pred cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC---eEEEECCcccCCCCCCCeeEEEECCchHHHHHHHH
Confidence 66665 466666778999999999999999999998 48888 99999998766655678999999999999999999
Q ss_pred hhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCc
Q psy14971 81 AQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISL 133 (156)
Q Consensus 81 ~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~ 133 (156)
++|||||+|++.+.+. .+.+..++|. ++.+..+.++.+.|+|+.+..+|
T Consensus 165 ~~L~pgG~lv~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~ 213 (215)
T 2yxe_A 165 RQLKDGGKLLMPVGRY---LQRLVLAEKR-GDEIIIKDCGPVAFVPLVGKEGF 213 (215)
T ss_dssp HTEEEEEEEEEEESSS---SEEEEEEEEE-TTEEEEEEEEEECCCBCBSTTSB
T ss_pred HHcCCCcEEEEEECCC---CcEEEEEEEe-CCEEEEEEeccEEEEeccccccC
Confidence 9999999999998764 2677778776 45799999999999999887664
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=110.35 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=107.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
|.++......+ .+|+++|+++++++.|++++.. .+ + ++++.+|+.+..+..++||+|+++...+++++.+.+
T Consensus 82 G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~-~~--~---v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~ 153 (231)
T 1vbf_A 82 GYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY-YN--N---IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYE 153 (231)
T ss_dssp SHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT-CS--S---EEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHH
T ss_pred CHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhh-cC--C---eEEEECCcccccccCCCccEEEECCcHHHHHHHHHH
Confidence 66665433333 7999999999999999999987 35 7 999999987755556789999999999999999999
Q ss_pred hCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhhhcc
Q psy14971 82 QLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKVQLQ 145 (156)
Q Consensus 82 ~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~~ 145 (156)
+|+|||+|++...+.. .+.+..+.+. ++.+....++.+.|.|+.+..+|......|..+..
T Consensus 154 ~L~pgG~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~ 214 (231)
T 1vbf_A 154 QLKEGGIMILPIGVGR--VQKLYKVIKK-GNSPSLENLGEVMFGRIGGLYGFYDDYDDIEFRVN 214 (231)
T ss_dssp TEEEEEEEEEEECSSS--SEEEEEEECC-TTSCEEEEEEEECCCBCCSTTSCSSCCCCHHHHHH
T ss_pred HcCCCcEEEEEEcCCC--ccEEEEEEEc-CCeeEEEEeccEEEEEcCCccchhhhcchHHHHhh
Confidence 9999999999987654 3667777665 45688899999999999988888555566665543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.9e-14 Score=111.69 Aligned_cols=123 Identities=23% Similarity=0.257 Sum_probs=100.8
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.++.. ++..+..++|+++|+++++++.|+++++. .|++| ++++.+|+.+..+..++||+|+++.+.+++++.+.
T Consensus 87 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~g~~~---v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~ 162 (317)
T 1dl5_A 87 GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-LGIEN---VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWF 162 (317)
T ss_dssp SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEESCGGGCCGGGCCEEEEEECSBBSCCCHHHH
T ss_pred hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH-cCCCC---eEEEECChhhccccCCCeEEEEEcCCHHHHHHHHH
Confidence 677754 55544458899999999999999999998 48888 99999999876555678999999999999999999
Q ss_pred hhCCCCcEEEEEeccCC-CcceEEEEEEEcCCCcEEEEEeeceEeeecCCC
Q psy14971 81 AQLKPGGRLVFHKGLHN-GHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGL 130 (156)
Q Consensus 81 ~~L~pGGrLv~~~~~~~-~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~ 130 (156)
++|||||+|++.+.+.. . .+.+..+.+. .+.+..+.++...+.|+.+.
T Consensus 163 ~~LkpgG~lvi~~~~~~~~-~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~ 211 (317)
T 1dl5_A 163 TQLKEGGRVIVPINLKLSR-RQPAFLFKKK-DPYLVGNYKLETRFITAGGN 211 (317)
T ss_dssp HHEEEEEEEEEEBCBGGGT-BCEEEEEEEE-TTEEEEEEEEECCCCBCCGG
T ss_pred HhcCCCcEEEEEECCCCcc-cceEEEEEEe-CCcEEEEEeccEEEEEccCc
Confidence 99999999999987643 1 2566667675 34799999999999887653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=100.63 Aligned_cols=140 Identities=9% Similarity=-0.023 Sum_probs=97.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---H
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---K 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~ 77 (156)
.|.+++.+...++.++|+++|+++++++.|++|++.. ++++ ++++.+|+.+..+...+||+|+++....... +
T Consensus 51 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~---v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~ 126 (204)
T 3e05_A 51 SASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF-VARN---VTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIID 126 (204)
T ss_dssp TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH-TCTT---EEEEECCTTTTCTTSCCCSEEEESCCTTCHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCc---EEEEeCChhhhhhcCCCCCEEEECCCCcCHHHHHH
Confidence 3777776555577799999999999999999999984 8878 9999999977666557899999998866444 5
Q ss_pred HHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhhhcc
Q psy14971 78 EILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKVQLQ 145 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~~ 145 (156)
.+.+.|+|||++++....... ...+....+..+-.+....+......++.....|..+.+.|-+--.
T Consensus 127 ~~~~~LkpgG~l~~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~i~~~~ 193 (204)
T 3e05_A 127 AVDRRLKSEGVIVLNAVTLDT-LTKAVEFLEDHGYMVEVACVNVAKTKGLTEYKMFESHNPVYIITAW 193 (204)
T ss_dssp HHHHHCCTTCEEEEEECBHHH-HHHHHHHHHHTTCEEEEEEEEEEEEC---CCCBCEECCCEEEEEEE
T ss_pred HHHHhcCCCeEEEEEeccccc-HHHHHHHHHHCCCceeEEEEEeecceEccceEEeccCCCeEEEEEE
Confidence 678899999999997653221 1222222122122344555555666677777777777766655443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=101.38 Aligned_cols=131 Identities=13% Similarity=0.106 Sum_probs=92.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCc-hHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-VPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-i~~~ 78 (156)
.|.+++.+... .++|+++|+++++++.|++|++. .+++ | ++++.+|+.+..+...+||+|+++.+... +.+.
T Consensus 66 ~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~-~g~~~~---v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~ 139 (204)
T 3njr_A 66 SGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDT-YGLSPR---MRAVQGTAPAALADLPLPEAVFIGGGGSQALYDR 139 (204)
T ss_dssp TCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCTTT---EEEEESCTTGGGTTSCCCSEEEECSCCCHHHHHH
T ss_pred CCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCC---EEEEeCchhhhcccCCCCCEEEECCcccHHHHHH
Confidence 36777644333 58999999999999999999998 4887 7 99999999875555568999999986533 5567
Q ss_pred HHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 79 ILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
+.+.|||||++++.....+. ...+..+.+.. + +....+......++.+...|....+.+
T Consensus 140 ~~~~LkpgG~lv~~~~~~~~-~~~~~~~l~~~-g-~~i~~i~~~~~~~~~~~~~~~~~~Pv~ 198 (204)
T 3njr_A 140 LWEWLAPGTRIVANAVTLES-ETLLTQLHARH-G-GQLLRIDIAQAEPLGRMRGWSASRPQL 198 (204)
T ss_dssp HHHHSCTTCEEEEEECSHHH-HHHHHHHHHHH-C-SEEEEEEEEEEEEETTEEEECCCCCEE
T ss_pred HHHhcCCCcEEEEEecCccc-HHHHHHHHHhC-C-CcEEEEEeecccccCccceeecCCCEE
Confidence 78999999999998764322 22222211221 2 455555556666777666666665544
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.6e-13 Score=95.73 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=93.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCC-CCcCEEEEccCCCc--hHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEE-GPYDIIHLGAACIE--VPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~-~~fD~I~i~~~~~~--i~~ 77 (156)
|.++..+....+..+|+++|+++++++.|+++++. .+.. + + ++.+|+.+.++.. ++||+|+++..... +.+
T Consensus 37 G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~---~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~~~~l~ 111 (178)
T 3hm2_A 37 GSIAIEWLRSTPQTTAVCFEISEERRERILSNAIN-LGVSDR---I-AVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFA 111 (178)
T ss_dssp THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHT-TTCTTS---E-EEECCTTGGGGGCCSCCSEEEECC-TTCTTHHH
T ss_pred CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHH-hCCCCC---E-EEecchHhhhhccCCCCCEEEECCcccHHHHHH
Confidence 66666544444568999999999999999999998 4876 6 8 8889987655543 78999999998775 567
Q ss_pred HHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhhhhhc
Q psy14971 78 EILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEYKVQL 144 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~~~~~ 144 (156)
.+.+.|+|||++++.....+. ...+..+.+..+ +....+......++.....|....+.|.+.+
T Consensus 112 ~~~~~L~~gG~l~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~ 175 (178)
T 3hm2_A 112 AAWKRLPVGGRLVANAVTVES-EQMLWALRKQFG--GTISSFAISHEHTVGSFITMKPALPVHQWTV 175 (178)
T ss_dssp HHHHTCCTTCEEEEEECSHHH-HHHHHHHHHHHC--CEEEEEEEEEEEECSSCEEEEECCCEEEEEE
T ss_pred HHHHhcCCCCEEEEEeecccc-HHHHHHHHHHcC--CeeEEEEeecCcccCCceeecCCCCeEEEEE
Confidence 888999999999997653321 122221112212 3334444456667787777777777665543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=99.70 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=65.7
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---chHHHHHhhCCCCcEE
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---EVPKEILAQLKPGGRL 89 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~i~~~l~~~L~pGGrL 89 (156)
++++|+++|+++++++.|++++++ .|+++ +++++||+.+ ++ .++||+|++.+..+ .+.+.+.++|||||+|
T Consensus 145 ~ga~V~gIDis~~~l~~Ar~~~~~-~gl~~---v~~v~gDa~~-l~-d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~L 218 (298)
T 3fpf_A 145 YGMRVNVVEIEPDIAELSRKVIEG-LGVDG---VNVITGDETV-ID-GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRI 218 (298)
T ss_dssp TCCEEEEEESSHHHHHHHHHHHHH-HTCCS---EEEEESCGGG-GG-GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh-cCCCC---eEEEECchhh-CC-CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEE
Confidence 358999999999999999999998 48867 9999999976 34 57899999988765 3567889999999999
Q ss_pred EEEec
Q psy14971 90 VFHKG 94 (156)
Q Consensus 90 v~~~~ 94 (156)
++...
T Consensus 219 vv~~~ 223 (298)
T 3fpf_A 219 IYRTY 223 (298)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=98.58 Aligned_cols=90 Identities=9% Similarity=0.139 Sum_probs=73.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCC--CCCcCEEEEccCCCchH-
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i~- 76 (156)
|+.++ +|..++++++|+++|+++++++.|+++++. .|+. ++ ++++.||+.+.++. .++||+||+++.....+
T Consensus 68 G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~~--i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~~~~ 144 (221)
T 3dr5_A 68 GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE-AGYSPSR--VRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKA 144 (221)
T ss_dssp HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH-TTCCGGG--EEEECSCHHHHGGGSCTTCEEEEEECCCTTTHHH
T ss_pred hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCcCc--EEEEEcCHHHHHHHhcCCCcCeEEEcCcHHHHHH
Confidence 66665 566677789999999999999999999998 4876 23 99999998764433 47899999999887765
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|||||+|++...
T Consensus 145 ~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 145 LVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HHHHHHHHEEEEEEEEETTT
T ss_pred HHHHHHHHcCCCcEEEEeCC
Confidence 456899999999999543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-11 Score=91.32 Aligned_cols=89 Identities=10% Similarity=-0.031 Sum_probs=67.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCC--------------CC------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKG--------------HA------ 58 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~--------------~~------ 58 (156)
+|+-|+..... ++++|+++|.++++.+.|+++++++ |+ .++ |+++.||+.+. ++
T Consensus 39 tGySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~-g~~~~~~--I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i 114 (202)
T 3cvo_A 39 SGGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN-PPAEGTE--VNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAV 114 (202)
T ss_dssp CSHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS-CCCTTCE--EEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGG
T ss_pred chHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCCc--eEEEEeCchhhhcccccccchhhhhHHHHhhhh
Confidence 37766543333 2699999999999999999999994 85 333 99999997654 11
Q ss_pred ----CCCCcCEEEEccCCCc-hHHHHHhhCCCCcEEEEEe
Q psy14971 59 ----EEGPYDIIHLGAACIE-VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 59 ----~~~~fD~I~i~~~~~~-i~~~l~~~L~pGGrLv~~~ 93 (156)
..++||+||+++.... ......++|+|||+|++..
T Consensus 115 ~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 115 WRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp GGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEETT
T ss_pred hccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEEeC
Confidence 2378999999998652 2234569999999998864
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=95.42 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=74.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC----chH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI----EVP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~----~i~ 76 (156)
.|++++.+...++.++|+++|+++.+++.|++|++.+ |+.++ |+++.+|+.+.++...+||.|++.++-. .+-
T Consensus 26 sG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~-gl~~~--i~~~~~d~l~~l~~~~~~D~IviaG~Gg~~i~~Il 102 (225)
T 3kr9_A 26 HAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-GLKEK--IQVRLANGLAAFEETDQVSVITIAGMGGRLIARIL 102 (225)
T ss_dssp TTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-TCTTT--EEEEECSGGGGCCGGGCCCEEEEEEECHHHHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCce--EEEEECchhhhcccCcCCCEEEEcCCChHHHHHHH
Confidence 4899998878888889999999999999999999995 88654 9999999987766544799999866533 334
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.|+++|+||+.-.
T Consensus 103 ~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 103 EEGLGKLANVERLILQPN 120 (225)
T ss_dssp HHTGGGCTTCCEEEEEES
T ss_pred HHHHHHhCCCCEEEEECC
Confidence 566789999999999543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=93.53 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=72.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCC-C-CCCcCEEEEccCCCchH-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHA-E-EGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~-~-~~~fD~I~i~~~~~~i~- 76 (156)
.|+.++......+.++|+++|+++++++.|+++++. .++. + ++++.+|+.+.++ . .++||+|++++....++
T Consensus 82 ~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~~ 157 (232)
T 3ntv_A 82 IGYSSMQFASISDDIHVTTIERNETMIQYAKQNLAT-YHFENQ---VRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKK 157 (232)
T ss_dssp SSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHH-TTCTTT---EEEEESCGGGCHHHHTTSCEEEEEEETTSSSHHH
T ss_pred hhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc---EEEEECCHHHHHHhhccCCccEEEEcCcHHHHHH
Confidence 377776544455679999999999999999999998 4875 6 9999999977554 2 47899999999887766
Q ss_pred --HHHHhhCCCCcEEEEE
Q psy14971 77 --KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~ 92 (156)
+.+.+.|+|||+|++.
T Consensus 158 ~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 158 FFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp HHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHhcCCCeEEEEe
Confidence 4567899999999994
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=92.10 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=71.2
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|.+++ +|+.+++.++|+++|+++++++.|++|++.. ++.++ ++++.+|+.+.++. .++||+||+++...
T Consensus 69 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 69 CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA-GLQDK--VTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-TCGGG--EEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc-CCCCc--eEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 367776 4555666799999999999999999999984 87543 99999998543322 15899999999887
Q ss_pred chHHH--HH---hhCCCCcEEEEEecc
Q psy14971 74 EVPKE--IL---AQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ~i~~~--l~---~~L~pGGrLv~~~~~ 95 (156)
.+++. +. +.|||||+|++....
T Consensus 146 ~~~~~~~~~~~~~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 146 RYLPDTLLLEKCGLLRKGTVLLADNVI 172 (221)
T ss_dssp GHHHHHHHHHHTTCCCTTCEEEESCCC
T ss_pred cchHHHHHHHhccccCCCeEEEEeCCC
Confidence 76631 22 789999999997543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.8e-11 Score=93.91 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=74.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc----hH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE----VP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~----i~ 76 (156)
.|++++.+...++.++|+|+|+++.+++.|++|++.+ |+.++ |+++.||+.+...+..+||.|++.+.-.. +-
T Consensus 32 sG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~-gl~~~--I~~~~gD~l~~~~~~~~~D~IviaGmGg~lI~~IL 108 (230)
T 3lec_A 32 HAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH-GLTSK--IDVRLANGLSAFEEADNIDTITICGMGGRLIADIL 108 (230)
T ss_dssp TTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT-TCTTT--EEEEECSGGGGCCGGGCCCEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEECchhhccccccccCEEEEeCCchHHHHHHH
Confidence 4899998877788889999999999999999999995 88654 99999999887765457999987665433 34
Q ss_pred HHHHhhCCCCcEEEEEe
Q psy14971 77 KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~ 93 (156)
+.+.+.|+++|+||+.-
T Consensus 109 ~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 109 NNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp HHTGGGGTTCCEEEEEE
T ss_pred HHHHHHhCcCCEEEEEC
Confidence 55678899999999853
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=92.90 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=71.7
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCCchH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~~i~ 76 (156)
.|+.++ ++..+++.++|+++|+++++++.|++++++ .|+.++ ++++.+|+.+.++ ..++||+|++++.....+
T Consensus 74 ~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~g~~~~--v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~~~~ 150 (248)
T 3tfw_A 74 GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL-AGVDQR--VTLREGPALQSLESLGECPAFDLIFIDADKPNNP 150 (248)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH-TTCTTT--EEEEESCHHHHHHTCCSCCCCSEEEECSCGGGHH
T ss_pred chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEEcCHHHHHHhcCCCCCeEEEEECCchHHHH
Confidence 366665 566666579999999999999999999998 487633 9999999865322 235899999999877665
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|||||+|++...
T Consensus 151 ~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 151 HYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp HHHHHHHHTCCTTCEEEEECC
T ss_pred HHHHHHHHhcCCCeEEEEeCC
Confidence 456789999999998654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=91.59 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=71.6
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-----CCCcCEEEEccCCCc
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-----EGPYDIIHLGAACIE 74 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-----~~~fD~I~i~~~~~~ 74 (156)
.|..++ ++..++++++|+++|+++++++.|+++++. .++.++ ++++.+|+.+.++. .++||+||+++..+.
T Consensus 69 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~ 145 (223)
T 3duw_A 69 GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER-ANLNDR--VEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN 145 (223)
T ss_dssp TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHH-TTCTTT--EEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHH
Confidence 366665 566665578999999999999999999998 487554 99999998653332 157999999998776
Q ss_pred hH---HHHHhhCCCCcEEEEEec
Q psy14971 75 VP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~---~~l~~~L~pGGrLv~~~~ 94 (156)
.+ +.+.+.|+|||+|++...
T Consensus 146 ~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 146 NPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESC
T ss_pred HHHHHHHHHHhcCCCcEEEEeCC
Confidence 55 456789999999998643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=94.23 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=71.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-------CCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-------EGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-------~~~fD~I~i~~~~~ 73 (156)
|+.++ ++..+.++++|+++|+++++++.|+++++. .|+.++ ++++.+|+.+.++. .++||+||+++...
T Consensus 91 G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g~~~~--i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~ 167 (247)
T 1sui_A 91 GYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-AGVDHK--IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD 167 (247)
T ss_dssp GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-TTCGGG--EEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCC--eEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH
Confidence 67775 566666679999999999999999999998 487433 99999998653331 36899999999877
Q ss_pred chH---HHHHhhCCCCcEEEEEe
Q psy14971 74 EVP---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~ 93 (156)
..+ +.+.+.|+|||+|++..
T Consensus 168 ~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 168 NYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp THHHHHHHHHHHBCTTCCEEEEC
T ss_pred HHHHHHHHHHHhCCCCeEEEEec
Confidence 655 46788999999999864
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-11 Score=92.66 Aligned_cols=91 Identities=14% Similarity=0.064 Sum_probs=72.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCC--ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACI--EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~--~i 75 (156)
.|++++......+.++|+++|+++++++.|++|++. +++.| ++++++|+.+.... .++||.|++.+... .+
T Consensus 91 ~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~l~~---v~~~~~d~~~~~~~~~~~~~fD~I~s~a~~~~~~l 166 (249)
T 3g89_A 91 AGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV-LGLKG---ARALWGRAEVLAREAGHREAYARAVARAVAPLCVL 166 (249)
T ss_dssp TTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HTCSS---EEEEECCHHHHTTSTTTTTCEEEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCc---eEEEECcHHHhhcccccCCCceEEEECCcCCHHHH
Confidence 477887655556779999999999999999999999 59888 99999998653321 36899999976442 34
Q ss_pred HHHHHhhCCCCcEEEEEecc
Q psy14971 76 PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.+.|||||++++..+.
T Consensus 167 l~~~~~~LkpgG~l~~~~g~ 186 (249)
T 3g89_A 167 SELLLPFLEVGGAAVAMKGP 186 (249)
T ss_dssp HHHHGGGEEEEEEEEEEECS
T ss_pred HHHHHHHcCCCeEEEEEeCC
Confidence 45677899999999998763
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-10 Score=84.25 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=71.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCC-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~----- 73 (156)
.|.+++......|..+|+++|+++++++.|++|++.. +++| ++++.+|+.+.. ...++||.|+++.+.+
T Consensus 52 ~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~-~~~~---v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~ 127 (214)
T 1yzh_A 52 KGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV-GVPN---IKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKR 127 (214)
T ss_dssp TSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-CCSS---EEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGG
T ss_pred cCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc-CCCC---EEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccc
Confidence 3677765444456789999999999999999999984 8878 999999997632 2346799999997754
Q ss_pred ---------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.+.|+|||++++...
T Consensus 128 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 128 HEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp GGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 234567889999999999764
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-11 Score=93.53 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=72.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-------CCCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-------EGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-------~~~fD~I~i~~~~ 72 (156)
.|+.++ ++..+++.++|+++|+++++++.|++++++ .|+.++ ++++.+|+.+..+. .++||.||+++..
T Consensus 81 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~--i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~ 157 (237)
T 3c3y_A 81 TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK-AGVEHK--INFIESDAMLALDNLLQGQESEGSYDFGFVDADK 157 (237)
T ss_dssp TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-TTCGGG--EEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCG
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEEcCHHHHHHHHHhccCCCCCcCEEEECCch
Confidence 367775 566666679999999999999999999998 487544 99999998653221 3689999999887
Q ss_pred CchH---HHHHhhCCCCcEEEEEec
Q psy14971 73 IEVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
...+ +.+.+.|+|||+|++...
T Consensus 158 ~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 158 PNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 6655 456789999999999653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-12 Score=98.01 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=73.3
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|+.++ +|..++++++|+++|+++++++.|+++++. .|+.++ |+++.||+.+.++. .++||+||+++...
T Consensus 71 ~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~--i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~ 147 (242)
T 3r3h_A 71 TGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE-AKQEHK--IKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT 147 (242)
T ss_dssp CSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHH-TTCTTT--EEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG
T ss_pred cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH
Confidence 377775 566676689999999999999999999998 487533 99999998764432 37899999999876
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
..+ +.+.+.|+|||+|++...
T Consensus 148 ~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 148 NYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HhHHHHHHHHHhcCCCeEEEEECC
Confidence 655 466889999999999643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-11 Score=92.45 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=73.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC----chH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI----EVP 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~----~i~ 76 (156)
.|++++.+...++.++|+++|+++.+++.|++|++.+ |+.++ |+++.+|+.+.+.+..+||.|++.+.-. .+-
T Consensus 32 sG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~-gl~~~--I~v~~gD~l~~~~~~~~~D~IviagmGg~lI~~IL 108 (244)
T 3gnl_A 32 HAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS-GLTEQ--IDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTIL 108 (244)
T ss_dssp TTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-TCTTT--EEEEECSGGGGCCGGGCCCEEEEEEECHHHHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCce--EEEEecchhhccCccccccEEEEeCCchHHHHHHH
Confidence 4899988777788789999999999999999999995 88655 9999999988766544699998765433 334
Q ss_pred HHHHhhCCCCcEEEEEe
Q psy14971 77 KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~ 93 (156)
+...+.|+++|+||+.-
T Consensus 109 ~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 109 EEGAAKLAGVTKLILQP 125 (244)
T ss_dssp HHTGGGGTTCCEEEEEE
T ss_pred HHHHHHhCCCCEEEEEc
Confidence 56678899999999853
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=93.81 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=71.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
|..++ +++.+++.++|+++|+++.+++.+++|+++ .|+.| ++++.+|+.+.....++||+|+++++|+.
T Consensus 130 G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~-~g~~~---v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~ 205 (315)
T 1ixk_A 130 GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR-LGVLN---VILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHK 205 (315)
T ss_dssp SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-HTCCS---EEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC-
T ss_pred CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH-hCCCe---EEEEECChhhcccccccCCEEEEeCCCCCcccccC
Confidence 55554 566777779999999999999999999999 49888 99999998763333467999999887532
Q ss_pred ----------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ----------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ----------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|||||+|++...+
T Consensus 206 ~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 206 NPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 123467899999999997653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=89.03 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=69.3
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C-CCCCcCEEEEccCCCchH-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A-EEGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~-~~~~fD~I~i~~~~~~i~- 76 (156)
|+++ .+|.++|++|+|+|+|++++|++.+++++++ . .| +..+.+|+.... + ....+|+||++.+.+.-+
T Consensus 89 G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-~--~n---i~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~~~~ 162 (233)
T 4df3_A 89 GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-R--RN---IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAA 162 (233)
T ss_dssp SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-C--TT---EEEEESCTTCGGGGTTTCCCEEEEEECCCCTTHHH
T ss_pred CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-h--cC---eeEEEEeccCccccccccceEEEEEEeccCChhHH
Confidence 6666 4788999999999999999999999999876 2 57 999999986532 1 236799999988877644
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
.++.+.|||||++++.+
T Consensus 163 ~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 163 IVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEEE
Confidence 34568899999999865
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=83.83 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=64.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEcc-CCCc---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGA-ACIE--- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~-~~~~--- 74 (156)
.|.++...... .++|+++|+++++++.|+++++.. +++| ++++.+|.... +. ..+||.|+++. ..+.
T Consensus 33 ~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~-~~~~---v~~~~~~~~~l~~~~-~~~fD~v~~~~~~~~~~~~ 105 (185)
T 3mti_A 33 NGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDL-GIEN---TELILDGHENLDHYV-REPIRAAIFNLGYLPSADK 105 (185)
T ss_dssp TSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHH-TCCC---EEEEESCGGGGGGTC-CSCEEEEEEEEC-------
T ss_pred CCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc-CCCc---EEEEeCcHHHHHhhc-cCCcCEEEEeCCCCCCcch
Confidence 36677543333 589999999999999999999984 8878 99999766442 22 46899999883 2222
Q ss_pred ----hH-------HHHHhhCCCCcEEEEEec
Q psy14971 75 ----VP-------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----i~-------~~l~~~L~pGGrLv~~~~ 94 (156)
.+ ..+.+.|||||++++...
T Consensus 106 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 106 SVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 23 456789999999999764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-11 Score=90.10 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=71.2
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-C-----CCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-E-----GPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~-----~~fD~I~i~~~~~ 73 (156)
.|+.++ ++..+++.++|+++|+++++++.|+++++. .++.++ ++++.+|+.+..+. . ++||+|++++...
T Consensus 75 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 75 TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEK-AGLSDK--IGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA 151 (225)
T ss_dssp TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-TTCTTT--EEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG
T ss_pred chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHH-CCCCCc--eEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH
Confidence 366665 455565579999999999999999999998 487644 99999998653322 1 6899999999866
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
..+ +.+.+.|+|||+|++...
T Consensus 152 ~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 152 NTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 554 466789999999998643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=98.02 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=71.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~----- 74 (156)
|..++ +|+++++.++|+++|+++.+++.+++|+++ .|+.| ++++.+|+.+... ..+.||+|+++++|+.
T Consensus 129 G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r-~g~~n---v~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~ 204 (479)
T 2frx_A 129 GSKTTQISARMNNEGAILANEFSASRVKVLHANISR-CGISN---VALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVR 204 (479)
T ss_dssp SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH-HTCCS---EEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGG
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCc---EEEEeCCHHHhhhhccccCCEEEECCCcCCccccc
Confidence 55554 677777779999999999999999999999 59888 9999999876322 2467999999987742
Q ss_pred -----------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -----------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.....+.|||||+||+..++
T Consensus 205 ~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 205 KDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp TCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 112346889999999997663
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=85.48 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=69.5
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCC-CCCCCcCEEEEccCC-C---
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAAC-I--- 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~-~--- 73 (156)
.|.++. ++...++.++|+++|+++++++.|+++++. .++ ++ ++++.+|+.+.. ....+||.|+++.+. +
T Consensus 33 ~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~ 108 (197)
T 3eey_A 33 NGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD-LNLIDR---VTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGD 108 (197)
T ss_dssp TSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHH-TTCGGG---EEEECSCGGGGGGTCCSCEEEEEEEESBCTTSC
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCC---eEEEECCHHHHhhhccCCceEEEEcCCcccCcc
Confidence 366665 566677778999999999999999999998 477 56 999999976532 223689999998754 1
Q ss_pred -----------chHHHHHhhCCCCcEEEEEe
Q psy14971 74 -----------EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 -----------~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+...+.+.|||||++++..
T Consensus 109 ~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 109 HSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp TTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 23346788999999999875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=88.58 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=68.4
Q ss_pred chHHH-HHHhcC-CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIKG-ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~g-~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. +++... ++.+|+|+|++++|++.|+++++. .+...+ |+++++|+.+. + ..+||.|++....+.++
T Consensus 82 G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~-~~~~~~--v~~~~~D~~~~-~-~~~~d~v~~~~~l~~~~~~~ 156 (261)
T 4gek_A 82 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTP--VDVIEGDIRDI-A-IENASMVVLNFTLQFLEPSE 156 (261)
T ss_dssp THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT-SCCSSC--EEEEESCTTTC-C-CCSEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh-hccCce--EEEeecccccc-c-ccccccceeeeeeeecCchh
Confidence 55664 455554 456999999999999999999987 465432 99999998763 3 35699999998887664
Q ss_pred -----HHHHhhCCCCcEEEEEec
Q psy14971 77 -----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 157 ~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 157 RQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhHHHHHHHHHcCCCcEEEEEec
Confidence 246789999999998643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=83.14 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=68.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCch---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i--- 75 (156)
.|.+++.+... +..+|+++|+++++++.|++|++.+ ++++ ++++++|+.+... ...+||.|+++.+....
T Consensus 55 ~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~---v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~ 129 (189)
T 3p9n_A 55 SGALGLEALSR-GAASVLFVESDQRSAAVIARNIEAL-GLSG---ATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSAD 129 (189)
T ss_dssp TCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHH-TCSC---EEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHH
T ss_pred cCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc-CCCc---eEEEEccHHHHHhhccCCCccEEEECCCCCcchhh
Confidence 36777643333 3468999999999999999999984 8777 9999999865322 24689999999876652
Q ss_pred -H---HHHHh--hCCCCcEEEEEecc
Q psy14971 76 -P---KEILA--QLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -~---~~l~~--~L~pGGrLv~~~~~ 95 (156)
. ..+.+ .|+|||++++....
T Consensus 130 ~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 130 VDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHHHHHHHHhcCccCCCeEEEEEecC
Confidence 1 34556 89999999997653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.6e-11 Score=90.78 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=71.7
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----------------C-CC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----------------E-GP 62 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----------------~-~~ 62 (156)
.|+++. ++...++.++|+++|+++++++.|+++++. .|+.++ ++++.+|+.+.++. . ++
T Consensus 71 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~--v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~ 147 (239)
T 2hnk_A 71 TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE-NGLENK--IFLKLGSALETLQVLIDSKSAPSWASDFAFGPSS 147 (239)
T ss_dssp TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH-TTCGGG--EEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTC
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCC--EEEEECCHHHHHHHHHhhcccccccccccCCCCC
Confidence 366665 466666578999999999999999999988 477544 99999997653221 2 68
Q ss_pred cCEEEEccCCCchH---HHHHhhCCCCcEEEEEe
Q psy14971 63 YDIIHLGAACIEVP---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 63 fD~I~i~~~~~~i~---~~l~~~L~pGGrLv~~~ 93 (156)
||+|++++....++ +.+.+.|+|||+|++..
T Consensus 148 fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 148 IDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99999998877666 56789999999999975
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-10 Score=88.20 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=72.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
.|.+++.+...+.. +|+++|+++++++.|++|++.+ ++.++ ++++++|+.+... ...||+|+++.+.. .+.+.
T Consensus 136 ~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n-~~~~~--v~~~~~D~~~~~~-~~~fD~Vi~~~p~~~~~~l~~ 210 (278)
T 2frn_A 136 IGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN-KVEDR--MSAYNMDNRDFPG-ENIADRILMGYVVRTHEFIPK 210 (278)
T ss_dssp TTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT-TCTTT--EEEECSCTTTCCC-CSCEEEEEECCCSSGGGGHHH
T ss_pred CCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc-CCCce--EEEEECCHHHhcc-cCCccEEEECCchhHHHHHHH
Confidence 36777765555543 8999999999999999999985 77654 9999999987555 57899999987654 34567
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|+|||+|++....
T Consensus 211 ~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 211 ALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp HHHHEEEEEEEEEEEEE
T ss_pred HHHHCCCCeEEEEEEee
Confidence 88999999999996653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.8e-10 Score=87.42 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=73.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc-C--CCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNI-K--QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVP 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~-g--~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~ 76 (156)
|.++. ++..+++.++|+++|+++++++.|++|++. . | .+| ++++.+|+.+.....++||+|+++...+ .+.
T Consensus 111 G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~g~~~~~---v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l 186 (280)
T 1i9g_A 111 GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG-CYGQPPDN---WRLVVSDLADSELPDGSVDRAVLDMLAPWEVL 186 (280)
T ss_dssp SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-HHTSCCTT---EEEECSCGGGCCCCTTCEEEEEEESSCGGGGH
T ss_pred cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-hcCCCCCc---EEEEECchHhcCCCCCceeEEEECCcCHHHHH
Confidence 66665 566678889999999999999999999987 5 5 467 9999999876533356899999987654 566
Q ss_pred HHHHhhCCCCcEEEEEecc
Q psy14971 77 KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.|+|||+|++....
T Consensus 187 ~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 187 DAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp HHHHHHEEEEEEEEEEESS
T ss_pred HHHHHhCCCCCEEEEEeCC
Confidence 7889999999999998754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.4e-10 Score=90.17 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=71.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE---- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~---- 74 (156)
.|.+++.+...++.++|+++|+++++++.|++|++.+ |+.| ++++.+|+.+.++. .+.||+|+++.+...
T Consensus 182 ~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-g~~~---v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~ 257 (373)
T 2qm3_A 182 DDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-GYED---IEIFTFDLRKPLPDYALHKFDTFITDPPETLEAIR 257 (373)
T ss_dssp TTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH-TCCC---EEEECCCTTSCCCTTTSSCBSEEEECCCSSHHHHH
T ss_pred CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCC---EEEEEChhhhhchhhccCCccEEEECCCCchHHHH
Confidence 3777776666677789999999999999999999984 8777 99999999875543 357999999976542
Q ss_pred -hHHHHHhhCCCCcEE-EEEecc
Q psy14971 75 -VPKEILAQLKPGGRL-VFHKGL 95 (156)
Q Consensus 75 -i~~~l~~~L~pGGrL-v~~~~~ 95 (156)
+-..+.+.|+|||++ ++.+..
T Consensus 258 ~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 258 AFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp HHHHHHHHTBCSTTCEEEEEECT
T ss_pred HHHHHHHHHcccCCeEEEEEEec
Confidence 224667899999955 554443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-10 Score=85.64 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=74.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
.|.++. ++..+++.++|+++|+++++++.|++|++.. ++.++ ++++.+|+.+..+ ..+||+|+++.+.+ .+.+.
T Consensus 104 ~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~l~~ 179 (255)
T 3mb5_A 104 SGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA-GFDDR--VTIKLKDIYEGIE-EENVDHVILDLPQPERVVEH 179 (255)
T ss_dssp TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH-TCTTT--EEEECSCGGGCCC-CCSEEEEEECSSCGGGGHHH
T ss_pred chHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc-CCCCc--eEEEECchhhccC-CCCcCEEEECCCCHHHHHHH
Confidence 366665 4566688899999999999999999999984 87655 9999999987644 46799999987765 35678
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+|||++++...
T Consensus 180 ~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 180 AAKALKPGGFFVAYTP 195 (255)
T ss_dssp HHHHEEEEEEEEEEES
T ss_pred HHHHcCCCCEEEEEEC
Confidence 8999999999999765
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=87.95 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=70.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~- 76 (156)
.|.+++......+.++|+++|+++++++.|+++++. .++.| ++++++|+.+.... .++||+|++.+. ..+.
T Consensus 81 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~~~~~~~~~fD~V~~~~~-~~~~~ 155 (240)
T 1xdz_A 81 AGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA-LQLEN---TTFCHDRAETFGQRKDVRESYDIVTARAV-ARLSV 155 (240)
T ss_dssp SCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HTCSS---EEEEESCHHHHTTCTTTTTCEEEEEEECC-SCHHH
T ss_pred CCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC---EEEEeccHHHhcccccccCCccEEEEecc-CCHHH
Confidence 367776554456678999999999999999999998 48888 99999998653211 468999999873 3333
Q ss_pred --HHHHhhCCCCcEEEEEecc
Q psy14971 77 --KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.|+|||++++..+.
T Consensus 156 ~l~~~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 156 LSELCLPLVKKNGLFVALKAA 176 (240)
T ss_dssp HHHHHGGGEEEEEEEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEEeCC
Confidence 4567899999999997653
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=82.13 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=68.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-----CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-----RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-----n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++......++..+|+++|+++++++.|++++... ++. + ++++.+|+.......++||+|++......++
T Consensus 41 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~---v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 116 (219)
T 3jwg_A 41 GNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKR---ISLFQSSLVYRDKRFSGYDAATVIEVIEHLD 116 (219)
T ss_dssp CHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG-GSCHHHHTT---EEEEECCSSSCCGGGTTCSEEEEESCGGGCC
T ss_pred CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh-ccccccCcc---eEEEeCcccccccccCCCCEEEEHHHHHhCC
Confidence 666655544556689999999999999999999873 553 6 9999999865433457899999998887665
Q ss_pred H--------HHHhhCCCCcEEEEEec
Q psy14971 77 K--------EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~--------~l~~~L~pGGrLv~~~~ 94 (156)
+ .+.+.|||||+++....
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 117 ENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 3 36789999997766543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=81.65 Aligned_cols=89 Identities=10% Similarity=-0.006 Sum_probs=69.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-----CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-----RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-----n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++..+...++..+|+++|+++++++.|+++++. .++. + ++++.+|+.......++||+|++......++
T Consensus 41 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~---v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (217)
T 3jwh_A 41 GNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR-LRLPRNQWER---LQLIQGALTYQDKRFHGYDAATVIEVIEHLD 116 (217)
T ss_dssp CHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTT-CCCCHHHHTT---EEEEECCTTSCCGGGCSCSEEEEESCGGGCC
T ss_pred CHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHH-hcCCcccCcc---eEEEeCCcccccccCCCcCEEeeHHHHHcCC
Confidence 66666555556668999999999999999999987 3654 6 9999999865433447899999998887654
Q ss_pred --------HHHHhhCCCCcEEEEEec
Q psy14971 77 --------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --------~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 117 LSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 246789999997777543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-10 Score=83.19 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=71.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. ++...++..+|+++|+++++++.|+++++.. ++.+ ++++.+|+.+.....++||+|++......++
T Consensus 49 G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 124 (219)
T 3dh0_A 49 GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL-GLKN---VEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLK 124 (219)
T ss_dssp CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-TCTT---EEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHH
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-CCCc---EEEEecccccCCCCCCCeeEEEeehhhhhcCCHHH
Confidence 55554 4556567789999999999999999999884 8778 9999999876433457899999998876553
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 125 ~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 125 FLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEEE
Confidence 45788999999999975
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=87.59 Aligned_cols=90 Identities=11% Similarity=0.143 Sum_probs=70.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~- 76 (156)
.|.+++......+.++|+++|+++++++.|+++++. .++.++ ++++.+|+.+..+. .++||+|+++...+..+
T Consensus 65 ~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~ 141 (233)
T 2gpy_A 65 IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKA-LGLESR--IELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRR 141 (233)
T ss_dssp TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-TTCTTT--EEEECSCGGGSHHHHTTSCCEEEEEEEGGGSCHHH
T ss_pred CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--EEEEECCHHHHHHhcccCCCccEEEECCCHHHHHH
Confidence 366665433333468999999999999999999998 477433 99999998764332 36899999999886554
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
+.+.+.|+|||+|++..
T Consensus 142 ~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 142 FFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp HHHHHGGGEEEEEEEEEET
T ss_pred HHHHHHHHcCCCeEEEEEc
Confidence 56788999999999974
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.4e-11 Score=90.18 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=70.5
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----C--CCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----E--GPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~--~~fD~I~i~~~~~ 73 (156)
.|+.++ ++..+++.++|+++|+++++++.|+++++.. |+.++ ++++.+|+.+.++. . ++||+||+++...
T Consensus 83 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~--i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~ 159 (232)
T 3cbg_A 83 RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-GVAEK--ISLRLGPALATLEQLTQGKPLPEFDLIFIDADKR 159 (232)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-TCGGG--EEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGG
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHH
Confidence 367775 4555655789999999999999999999984 87543 99999997543221 1 6899999998866
Q ss_pred chH---HHHHhhCCCCcEEEEEec
Q psy14971 74 EVP---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~---~~l~~~L~pGGrLv~~~~ 94 (156)
..+ +.+.+.|+|||+|++...
T Consensus 160 ~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 160 NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 554 466889999999999644
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=87.63 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=71.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC--CchHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC--IEVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~--~~i~~~ 78 (156)
.|.+++.+...++.++|+++|+++++++.|++|++.+ +++| ++++.+|+.+. +....||+|+++.+. ..+...
T Consensus 130 ~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n-~l~~---~~~~~~d~~~~-~~~~~~D~Vi~d~p~~~~~~l~~ 204 (272)
T 3a27_A 130 IGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN-KLNN---VIPILADNRDV-ELKDVADRVIMGYVHKTHKFLDK 204 (272)
T ss_dssp TTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT-TCSS---EEEEESCGGGC-CCTTCEEEEEECCCSSGGGGHHH
T ss_pred CCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCC---EEEEECChHHc-CccCCceEEEECCcccHHHHHHH
Confidence 3677765444444579999999999999999999985 8888 99999999875 445679999999875 234467
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
+.+.|+|||++++...
T Consensus 205 ~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 205 TFEFLKDRGVIHYHET 220 (272)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHHcCCCCEEEEEEc
Confidence 7889999999998654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-10 Score=83.78 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=69.8
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCC-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~----- 73 (156)
+|.+++......|...|+|+|+++++++.|+++++. .++.| ++++.+|+.+.. ...+.||.|++..+.+
T Consensus 49 ~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~-~~~~n---v~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~ 124 (213)
T 2fca_A 49 KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD-SEAQN---VKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKR 124 (213)
T ss_dssp TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-SCCSS---EEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGG
T ss_pred CCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH-cCCCC---EEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCcc
Confidence 366666444445678999999999999999999998 48888 999999987521 1246799999986543
Q ss_pred ---------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.+.|+|||+|++...
T Consensus 125 ~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 125 HEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp GGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 123567889999999999764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-10 Score=87.81 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=71.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~---- 73 (156)
+|.+++......|...|+|+|+++++++.|+++++. .++.| ++++.+|+.+.+ ...++||.|++..+.+
T Consensus 45 ~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~-~~l~n---v~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~ 120 (218)
T 3dxy_A 45 MGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE-EGLSN---LRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKA 120 (218)
T ss_dssp TCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-TTCSS---EEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSG
T ss_pred ChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH-hCCCc---EEEEECCHHHHHHHHcCCCChheEEEeCCCCccch
Confidence 477776544456778999999999999999999998 48889 999999987642 2357899999985543
Q ss_pred ----------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 ----------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ----------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.+.+.|||||+|++...
T Consensus 121 ~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 121 RHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp GGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 134567788999999999775
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=83.87 Aligned_cols=89 Identities=11% Similarity=0.057 Sum_probs=69.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......++ ++|+++|+++++++.|+++++. .++.++ ++++.+|+.+.....++||+|++.....++.
T Consensus 58 G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~-~~~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l 133 (257)
T 3f4k_A 58 GGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVK-ANCADR--VKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGM 133 (257)
T ss_dssp SHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHH-TTCTTT--EEEEECCTTSCSSCTTCEEEEEEESCSCCCCHHHHH
T ss_pred CHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHH-cCCCCc--eEEEECChhhCCCCCCCEEEEEecChHhhcCHHHHH
Confidence 666654433343 4999999999999999999998 487654 9999999965433457899999998887642
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 134 ~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 134 NEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp HHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEe
Confidence 457789999999999763
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-10 Score=85.97 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=72.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+|..+|+++|+++.+++.|++++.. .+..| ++++.+|+.+.....++||.|++......++
T Consensus 49 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 124 (276)
T 3mgg_A 49 GAQTVILAKNNPDAEITSIDISPESLEKARENTEK-NGIKN---VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEA 124 (276)
T ss_dssp SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCC---cEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHH
Confidence 56665444446678999999999999999999988 48888 9999999876444467899999998876554
Q ss_pred -HHHHhhCCCCcEEEEEec
Q psy14971 77 -KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 125 l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 125 LKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEEc
Confidence 357889999999999753
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=90.25 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=70.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCc--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIE-- 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~-- 74 (156)
|..+. +++++...++|+++|+++.+++.+++|+++ .|+.| ++++.+|+.+... ..++||+|+++++++.
T Consensus 95 G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~-~g~~~---v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g 170 (274)
T 3ajd_A 95 GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR-MGVLN---TIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNI 170 (274)
T ss_dssp CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEESCHHHHHHHHHHTTCCEEEEEEEECCC---
T ss_pred cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH-hCCCc---EEEEeCChHhcchhhhhccccCCEEEEcCCCCCCc
Confidence 55554 566665568999999999999999999999 58888 9999999865322 1467999999977642
Q ss_pred ----------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ----------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ----------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|||||+|++...+
T Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 171 IKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp ---------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 223456799999999997764
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-10 Score=88.74 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=70.5
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-----------CCCccceEEEEccCCCCCC--CCCCcCEE
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-----------QNRKSFKNVSVKDGSKGHA--EEGPYDII 66 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-----------~~n~~~v~~~~gD~~~~~~--~~~~fD~I 66 (156)
.|.+++ ++..+++.++|+++|+++++++.|++|++. ++ ..| ++++.+|+.+... ..++||+|
T Consensus 116 ~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~ln~~~~~~~~---v~~~~~d~~~~~~~~~~~~fD~V 191 (336)
T 2b25_A 116 SGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH-WRDSWKLSHVEEWPDN---VDFIHKDISGATEDIKSLTFDAV 191 (336)
T ss_dssp TSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH-HHHHHTTTCSSCCCCC---EEEEESCTTCCC-------EEEE
T ss_pred cCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH-hhcccccccccccCCc---eEEEECChHHcccccCCCCeeEE
Confidence 377776 455668889999999999999999999986 23 246 9999999987532 23579999
Q ss_pred EEccCCCc-hHHHHHhhCCCCcEEEEEecc
Q psy14971 67 HLGAACIE-VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 67 ~i~~~~~~-i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+++...+. +.+.+.+.|+|||+|++....
T Consensus 192 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 192 ALDMLNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp EECSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred EECCCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99876653 467889999999999997753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=84.43 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=69.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..+... +.++|+++|+++.+++.|+++++. .++.++ ++++.+|..+.....++||+|++......+.
T Consensus 58 G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~l 133 (267)
T 3kkz_A 58 GGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQ-SGLQNR--VTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGL 133 (267)
T ss_dssp CHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHH-TTCTTT--EEEEECCTTSCCCCTTCEEEEEESSCGGGTCHHHHH
T ss_pred CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHH-cCCCcC--cEEEEcChhhCCCCCCCEEEEEEcCCceecCHHHHH
Confidence 5666543333 457999999999999999999988 477443 9999999976433457899999998876542
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 134 ~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 134 NEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp HHHGGGEEEEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEEEEe
Confidence 467889999999999754
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=83.40 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=73.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc-CCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNI-KQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~-g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
|.++. ++..+++.++|+++|+++++++.|+++++. . |.++ ++++.+|+.+.....+.||+|+++.... .+.+.
T Consensus 108 G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~-~~g~~~---v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~ 183 (258)
T 2pwy_A 108 GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA-FWQVEN---VRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEK 183 (258)
T ss_dssp SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-HCCCCC---EEEEESCGGGCCCCTTCEEEEEEESSCGGGGHHH
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-hcCCCC---EEEEECchhhcCCCCCCcCEEEECCcCHHHHHHH
Confidence 56665 456668889999999999999999999987 5 6567 9999999876522336799999987654 56678
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|+|||++++....
T Consensus 184 ~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 184 AALALKPDRFLVAYLPN 200 (258)
T ss_dssp HHHHEEEEEEEEEEESC
T ss_pred HHHhCCCCCEEEEEeCC
Confidence 89999999999998764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-10 Score=97.55 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=71.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCch----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i---- 75 (156)
|..|+ +|++++..++|+++|+++.+++.+++|+++ +|+.| +.++.+|+.+... ..+.||+|+++++|+..
T Consensus 117 Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r-~g~~n---v~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~r 192 (456)
T 3m4x_A 117 GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER-WGVSN---AIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFR 192 (456)
T ss_dssp CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH-HTCSS---EEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTT
T ss_pred CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCc---eEEEeCCHHHhhhhccccCCEEEECCCCCCccccc
Confidence 55554 677777779999999999999999999999 59988 9999999865321 24689999999987421
Q ss_pred ------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-+...+.|||||+||..+++
T Consensus 193 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 193 KDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp TCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred cCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 12346789999999997663
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=83.78 Aligned_cols=87 Identities=10% Similarity=-0.055 Sum_probs=65.8
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCCchHH
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~~i~~ 77 (156)
|.++ .+|.++++.|+|+|+|+++.+++...+..+. . .| +.++.+|+..... ...+||+|+++.+.+..++
T Consensus 88 G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r--~n---v~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~~~~ 161 (232)
T 3id6_C 88 GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-R--PN---IFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTD 161 (232)
T ss_dssp SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-C--TT---EEEEECCTTCGGGTTTTCCCEEEEEECCCCTTHHH
T ss_pred CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-c--CC---eEEEEcccccchhhhccccceEEEEecCCChhHHH
Confidence 5655 5788899999999999999998666555444 1 57 9999999876421 1358999999998865443
Q ss_pred H----HHhhCCCCcEEEEEec
Q psy14971 78 E----ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~----l~~~L~pGGrLv~~~~ 94 (156)
. +.+.|||||+|++.+.
T Consensus 162 il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 162 IAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp HHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEEEEEc
Confidence 2 3448999999999853
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=84.26 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=67.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+ ++|+++|+++++++.|+++++. .+..| ++++.+|+.+.....++||+|++.....+++
T Consensus 49 G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~-~~~~~---v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~ 122 (260)
T 1vl5_A 49 GHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG-NGHQQ---VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASF 122 (260)
T ss_dssp CHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred CHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHh-cCCCc---eEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHH
Confidence 55554433333 5999999999999999999988 48778 9999999876433457899999998886654
Q ss_pred -HHHHhhCCCCcEEEEEe
Q psy14971 77 -KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||+|++..
T Consensus 123 l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 123 VSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCCCEEEEEE
Confidence 35789999999999964
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.1e-10 Score=83.23 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=66.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC--CCC-cCEEEEccCCC--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE--EGP-YDIIHLGAACI-- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~--~~~-fD~I~i~~~~~-- 73 (156)
.|.+++.+...+. ++|+++|+++++++.|++|++. .++ ++ ++++.+|+.+..+. ..+ ||+|+++.+..
T Consensus 64 tG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~---v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~ 138 (201)
T 2ift_A 64 SGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQT-LKCSSEQ---AEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFN 138 (201)
T ss_dssp TCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH-TTCCTTT---EEEECSCHHHHTTSCCSSCCEEEEEECCCSSSC
T ss_pred cCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHH-hCCCccc---eEEEECCHHHHHHhhccCCCCCEEEECCCCCCc
Confidence 3667764333332 6999999999999999999998 487 57 99999998653332 467 99999998743
Q ss_pred chH---HHH--HhhCCCCcEEEEEecc
Q psy14971 74 EVP---KEI--LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ~i~---~~l--~~~L~pGGrLv~~~~~ 95 (156)
..+ ..+ .+.|+|||++++....
T Consensus 139 ~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 139 LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 222 234 3459999999997764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=82.64 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=65.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC--CCCCCCCcCEEEEccCCC------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK--GHAEEGPYDIIHLGAACI------ 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~--~~~~~~~fD~I~i~~~~~------ 73 (156)
|.+++.+.... .++|+++|+++++++.|++|++.+ +. + ++++.+|+.. ..+ .++||+|+++.+..
T Consensus 68 G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~-~---v~~~~~d~~~~~~~~-~~~fD~I~~npp~~~~~~~~ 140 (230)
T 3evz_A 68 AMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN-NS-N---VRLVKSNGGIIKGVV-EGTFDVIFSAPPYYDKPLGR 140 (230)
T ss_dssp CHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT-TC-C---CEEEECSSCSSTTTC-CSCEEEEEECCCCC------
T ss_pred HHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh-CC-C---cEEEeCCchhhhhcc-cCceeEEEECCCCcCCcccc
Confidence 66776443332 489999999999999999999984 77 7 9999999642 333 37899999985542
Q ss_pred -------------------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 -------------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -------------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.+.+.|||||++++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 141 VLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp ---------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 123456788999999999654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=88.36 Aligned_cols=92 Identities=15% Similarity=0.010 Sum_probs=72.4
Q ss_pred CchHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----
Q psy14971 1 MGDLNVIVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 1 ~G~la~la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~----- 74 (156)
.|.+++.+... ++..+|+++|+++++++.|++|++.+ |+++ ++++.+|+.+.......||+|+++.+...
T Consensus 214 sG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~-g~~~---i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~ 289 (354)
T 3tma_A 214 SGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS-GLSW---IRFLRADARHLPRFFPEVDRILANPPHGLRLGRK 289 (354)
T ss_dssp TSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT-TCTT---CEEEECCGGGGGGTCCCCSEEEECCCSCC----C
T ss_pred cCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc-CCCc---eEEEeCChhhCccccCCCCEEEECCCCcCccCCc
Confidence 36677655554 47799999999999999999999994 8877 99999999875444567999999876431
Q ss_pred ---------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 75 ---------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 ---------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.+.+.+.|+|||++++.....
T Consensus 290 ~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 290 EGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred ccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 2235678999999999987653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=85.18 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=68.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~i~--- 76 (156)
|+.++ ++..+.+.++|+++|+++++++.|+++++.. ++.++ ++++.+|+.+..+. .+ ||+|++++.....+
T Consensus 68 G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~~~~~-fD~v~~~~~~~~~~~~l 143 (210)
T 3c3p_A 68 GCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN-GLIDR--VELQVGDPLGIAAGQRD-IDILFMDCDVFNGADVL 143 (210)
T ss_dssp GHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-SGGGG--EEEEESCHHHHHTTCCS-EEEEEEETTTSCHHHHH
T ss_pred cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCce--EEEEEecHHHHhccCCC-CCEEEEcCChhhhHHHH
Confidence 66665 4555554789999999999999999999884 76443 99999998653222 24 99999998776555
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|+|||+|++...
T Consensus 144 ~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 144 ERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp HHHGGGEEEEEEEEEESS
T ss_pred HHHHHhcCCCeEEEEECc
Confidence 456789999999998543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-09 Score=79.45 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~l 79 (156)
|.++..+... .++|+++|+++++++.|+++++. .++ ++ ++++.+|..+.......||+|+++.+.+ ...+.+
T Consensus 103 G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~---~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~ 176 (248)
T 2yvl_A 103 GALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKK-FNLGKN---VKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKV 176 (248)
T ss_dssp SHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHH-TTCCTT---EEEECSCTTTSCCCTTCBSEEEECSSCGGGGHHHH
T ss_pred cHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHH-cCCCCc---EEEEEcChhhcccCCCcccEEEECCcCHHHHHHHH
Confidence 5666543332 48999999999999999999988 477 56 9999999987552346799999987654 566788
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
.+.|+|||++++....
T Consensus 177 ~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 177 HKSLMEGAPVGFLLPT 192 (248)
T ss_dssp HHHBCTTCEEEEEESS
T ss_pred HHHcCCCCEEEEEeCC
Confidence 9999999999998864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=83.92 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=72.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc-CCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNI-KQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~-g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
|.++. +++.+++.++|+++|+++++++.|++|++. . |.+| ++++.+|+.+..+ .++||+|+++.... .+.+.
T Consensus 122 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~g~~~---v~~~~~d~~~~~~-~~~fD~Vi~~~~~~~~~l~~ 196 (275)
T 1yb2_A 122 GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE-FYDIGN---VRTSRSDIADFIS-DQMYDAVIADIPDPWNHVQK 196 (275)
T ss_dssp SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT-TSCCTT---EEEECSCTTTCCC-SCCEEEEEECCSCGGGSHHH
T ss_pred CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh-cCCCCc---EEEEECchhccCc-CCCccEEEEcCcCHHHHHHH
Confidence 56665 455567779999999999999999999987 6 6677 9999999987444 46899999976543 45578
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|+|||+|++....
T Consensus 197 ~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 197 IASMMKPGSVATFYLPN 213 (275)
T ss_dssp HHHTEEEEEEEEEEESS
T ss_pred HHHHcCCCCEEEEEeCC
Confidence 88999999999998764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=85.02 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=73.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
|.+++ ++..+++.++|+++|+++++++.|++|++. .++ ++ ++++.+|+.+..+ .+.||+|+++.+.+ .+.+.
T Consensus 124 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~-~~~~D~V~~~~~~~~~~l~~ 198 (277)
T 1o54_A 124 GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-WGLIER---VTIKVRDISEGFD-EKDVDALFLDVPDPWNYIDK 198 (277)
T ss_dssp SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-TTCGGG---EEEECCCGGGCCS-CCSEEEEEECCSCGGGTHHH
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-cCCCCC---EEEEECCHHHccc-CCccCEEEECCcCHHHHHHH
Confidence 66665 455568889999999999999999999998 476 46 9999999877643 35799999987655 56678
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|+|||+|++....
T Consensus 199 ~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 199 CWEALKGGGRFATVCPT 215 (277)
T ss_dssp HHHHEEEEEEEEEEESS
T ss_pred HHHHcCCCCEEEEEeCC
Confidence 89999999999998764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=81.98 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=68.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. ++... +.+|+++|+++++++.|+++++. .|+. | ++++.+|+.+... .++||+|++......++
T Consensus 48 G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~ 120 (256)
T 1nkv_A 48 GEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEE-LGVSER---VHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFA 120 (256)
T ss_dssp CHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHH-TTCTTT---EEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSH
T ss_pred CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHh-cCCCcc---eEEEECChHhCCc-CCCCCEEEECCChHhcCCHH
Confidence 55664 45555 36999999999999999999988 4774 6 9999999987544 67899999987766542
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 121 ~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 121 GAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp HHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEecC
Confidence 467889999999999653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-10 Score=85.81 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=69.3
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCC---C---CCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAE---E---GPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~---~---~~fD~I~i~~~~ 72 (156)
.|++++ ++..+++.++|+++|+++++++.|+++++.. |+ ++ ++++.+|+.+..+. . ++||+|++++..
T Consensus 80 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~---i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~ 155 (229)
T 2avd_A 80 TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-EAEHK---IDLRLKPALETLDELLAAGEAGTFDVAVVDADK 155 (229)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-TCTTT---EEEEESCHHHHHHHHHHTTCTTCEEEEEECSCS
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCe---EEEEEcCHHHHHHHHHhcCCCCCccEEEECCCH
Confidence 367765 4555555789999999999999999999984 77 45 99999998543221 1 679999999887
Q ss_pred CchH---HHHHhhCCCCcEEEEEe
Q psy14971 73 IEVP---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i~---~~l~~~L~pGGrLv~~~ 93 (156)
.... +.+.+.|+|||++++..
T Consensus 156 ~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 156 ENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEC
Confidence 6443 56788999999999954
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=80.44 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=68.1
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++.. +.. +..+|+++|+++++++.|+++++. .+.. + ++++.+|..+.....++||+|++.....+++
T Consensus 55 G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~---~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~ 128 (219)
T 3dlc_A 55 GALSIALAKQ--SDFSIRALDFSKHMNEIALKNIAD-ANLNDR---IQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVA 128 (219)
T ss_dssp SHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHH-TTCTTT---EEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHH
T ss_pred CHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHh-ccccCc---eEEEEcCHHHCCCCcccccEEEECchHhhccCHH
Confidence 555543 443 457999999999999999999988 4764 5 9999999876433457899999998876543
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 129 ~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 129 TAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEe
Confidence 46788999999999964
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=82.70 Aligned_cols=91 Identities=16% Similarity=0.034 Sum_probs=68.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-----cCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-----IKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-----~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~ 73 (156)
|.+++......+...|+|+|+++.+++.|+++++.. .+..| ++++.+|+.+.++ ..+.||.|++..+.+
T Consensus 58 G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~n---v~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp 134 (235)
T 3ckk_A 58 GGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN---IACLRSNAMKHLPNFFYKGQLTKMFFLFPDP 134 (235)
T ss_dssp CHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTT---EEEEECCTTTCHHHHCCTTCEEEEEEESCC-
T ss_pred cHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCe---EEEEECcHHHhhhhhCCCcCeeEEEEeCCCc
Confidence 666654444456789999999999999999987641 15678 9999999976433 357899999987543
Q ss_pred c--------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 74 E--------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ~--------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
. +...+.+.|||||+|++....
T Consensus 135 ~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 135 HFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp ----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 2 345678999999999997653
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=90.86 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=70.4
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCc----
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIE---- 74 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~---- 74 (156)
|..+ .++..++..++|+++|+++.+++.+++|+++ .|+.| ++++.+|+.+... ..+.||+|+++++|+.
T Consensus 271 G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~-~g~~~---v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~ 346 (450)
T 2yxl_A 271 GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR-MGIKI---VKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTI 346 (450)
T ss_dssp CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-TTCCS---EEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGT
T ss_pred cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-cCCCc---EEEEEcChhhcchhhccCCCCEEEEcCCCCCCeee
Confidence 4445 4666666568999999999999999999999 59888 9999999876432 1267999999887742
Q ss_pred ------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+...+.+.|||||+|++..++
T Consensus 347 ~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 347 GKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp TTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 123457889999999987664
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-09 Score=81.92 Aligned_cols=90 Identities=17% Similarity=0.095 Sum_probs=70.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--------CCCCccceEEEEccCCCCCC---CCCCcCEEEEc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNI--------KQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLG 69 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--------g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~ 69 (156)
.|.+++.+...++...|+++|+++.+++.|+++++. . ++.| ++++.+|+.+.++ +.+.+|.|++.
T Consensus 60 ~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~n---v~~~~~D~~~~l~~~~~~~~~d~v~~~ 135 (246)
T 2vdv_E 60 FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIA-LRNNTASKHGFQN---INVLRGNAMKFLPNFFEKGQLSKMFFC 135 (246)
T ss_dssp TSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHH-HHHTC-CCSTTTT---EEEEECCTTSCGGGTSCTTCEEEEEEE
T ss_pred CCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHH-HhhccccccCCCc---EEEEeccHHHHHHHhccccccCEEEEE
Confidence 367776555556778999999999999999999876 4 6678 9999999976433 34689999987
Q ss_pred cCCC--------------chHHHHHhhCCCCcEEEEEec
Q psy14971 70 AACI--------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 70 ~~~~--------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+-+ .+...+.+.|+|||+|++...
T Consensus 136 ~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 136 FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 6544 344567899999999999654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=81.37 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=68.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......+..+|+++|+++++++.|++++.. .+ + ++++.+|+.+.... ++||+|++......++
T Consensus 56 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~--~---~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~ 128 (234)
T 3dtn_A 56 GLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-NL--K---VKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKK 128 (234)
T ss_dssp SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-CT--T---EEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-CC--C---EEEEeCchhccCCC-CCceEEEEeCccccCCHHHHH
Confidence 56665443444678999999999999999999876 34 6 99999999775444 7899999998877654
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 129 ~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 129 ELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEEe
Confidence 345789999999999753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=79.37 Aligned_cols=88 Identities=16% Similarity=0.034 Sum_probs=68.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---HH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---KE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~~ 78 (156)
|.++.......+..+|+++|+++++++.|+++++. .++.| ++++.+|+.+.. ..++||.|++.+. .... ..
T Consensus 77 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~-~~~~~D~i~~~~~-~~~~~~l~~ 150 (207)
T 1jsx_A 77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE-LKLEN---IEPVQSRVEEFP-SEPPFDGVISRAF-ASLNDMVSW 150 (207)
T ss_dssp TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-TTCSS---EEEEECCTTTSC-CCSCEEEEECSCS-SSHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCC---eEEEecchhhCC-ccCCcCEEEEecc-CCHHHHHHH
Confidence 66665444444568999999999999999999998 48888 999999987643 3468999997653 3333 45
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|+|||++++..+.
T Consensus 151 ~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 151 CHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp HTTSEEEEEEEEEEESS
T ss_pred HHHhcCCCcEEEEEeCC
Confidence 67889999999998764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=88.08 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=71.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++.+...+|..+|+++|+++.+++.|++|++.+ ++.+...++++.+|+.+..+ .++||.|+++.+.+.
T Consensus 233 ~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n-gl~~~~~v~~~~~D~~~~~~-~~~fD~Ii~nppfh~~~~~~~ 310 (375)
T 4dcm_A 233 NGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALSGVE-PFRFNAVLCNPPFHQQHALTD 310 (375)
T ss_dssp TCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGGGEEEEECSTTTTCC-TTCEEEEEECCCC-------C
T ss_pred chHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc-CCCcCceEEEEechhhccCC-CCCeeEEEECCCcccCcccCH
Confidence 4778876666677799999999999999999999985 65411018899999987554 468999999877542
Q ss_pred -----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|||||++++...
T Consensus 311 ~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 311 NVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 23567789999999999764
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=84.47 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=69.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
.|.+++.+...|. ++|+++|++|+.++.+++|++.+ ++.++ ++++.+|+.+. .....||+|+++.+.. +.-+.
T Consensus 136 ~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N-~v~~~--v~~~~~D~~~~-~~~~~~D~Vi~~~p~~~~~~l~~ 210 (278)
T 3k6r_A 136 IGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN-KVEDR--MSAYNMDNRDF-PGENIADRILMGYVVRTHEFIPK 210 (278)
T ss_dssp TTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT-TCTTT--EEEECSCTTTC-CCCSCEEEEEECCCSSGGGGHHH
T ss_pred CcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHc-CCCCc--EEEEeCcHHHh-ccccCCCEEEECCCCcHHHHHHH
Confidence 4778887666553 69999999999999999999996 88665 99999999874 3457899999986553 33356
Q ss_pred HHhhCCCCcEEEEE
Q psy14971 79 ILAQLKPGGRLVFH 92 (156)
Q Consensus 79 l~~~L~pGGrLv~~ 92 (156)
..+.|++||.|.+.
T Consensus 211 a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 211 ALSIAKDGAIIHYH 224 (278)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHHHcCCCCEEEEE
Confidence 67899999998764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=80.98 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=66.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC--ch--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI--EV-- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~--~i-- 75 (156)
.|.+++.+...+. .+|+++|+++++++.|++|++. .++++ ++++.+|+.+..+ ...+||+|+++.+.. ..
T Consensus 65 ~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~-~~~~~---v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~ 139 (202)
T 2fpo_A 65 SGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLAT-LKAGN---ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEE 139 (202)
T ss_dssp TCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH-TTCCS---EEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHH
T ss_pred cCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHH-cCCCc---EEEEECCHHHHHhhcCCCCCEEEECCCCCCCcHHH
Confidence 3667764333332 5999999999999999999998 47777 9999999865322 246799999998733 22
Q ss_pred -HHHHHh--hCCCCcEEEEEecc
Q psy14971 76 -PKEILA--QLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -~~~l~~--~L~pGGrLv~~~~~ 95 (156)
.+.+.+ .|+|||++++....
T Consensus 140 ~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 140 TINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHHHHhcCccCCCcEEEEEECC
Confidence 233433 49999999987764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-09 Score=80.33 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=68.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+ .+|+++|+++++++.|+++++.. +..| ++++.+|+.+.....++||.|++.....+++
T Consensus 33 G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~-~~~~---v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 106 (239)
T 1xxl_A 33 GHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK-GVEN---VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA 106 (239)
T ss_dssp SHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH-TCCS---EEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred CHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc-CCCC---eEEEecccccCCCCCCcEEEEEECCchhhccCHHHH
Confidence 55555433333 59999999999999999999884 8778 9999999876433457899999998776543
Q ss_pred -HHHHhhCCCCcEEEEEec
Q psy14971 77 -KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 107 l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 107 VREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEEc
Confidence 456889999999999643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=83.97 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=63.3
Q ss_pred CchHHH-HHHh---cCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CC--CCCCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGI---KGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HA--EEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l---~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~--~~~~fD~I~i~~~~ 72 (156)
.|++++ +|+. +++.++|+++|+++++++.|+ . +. +| +++++||+.+. ++ ...+||+|+++++.
T Consensus 92 tG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~-~~-~~---v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~ 162 (236)
T 2bm8_A 92 NGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----S-DM-EN---ITLHQGDCSDLTTFEHLREMAHPLIFIDNAH 162 (236)
T ss_dssp TSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----G-GC-TT---EEEEECCSSCSGGGGGGSSSCSSEEEEESSC
T ss_pred CCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----c-cC-Cc---eEEEECcchhHHHHHhhccCCCCEEEECCch
Confidence 367775 4555 477899999999999999887 2 22 46 99999999874 22 33479999999886
Q ss_pred CchHH---HHHh-hCCCCcEEEEE
Q psy14971 73 IEVPK---EILA-QLKPGGRLVFH 92 (156)
Q Consensus 73 ~~i~~---~l~~-~L~pGGrLv~~ 92 (156)
..++. .+.+ +|||||+|++.
T Consensus 163 ~~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 163 ANTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp SSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred HhHHHHHHHHHHhhCCCCCEEEEE
Confidence 55554 3454 99999999994
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-09 Score=82.51 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=68.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhh---hcCCCCccceEEEEccCCCCCC-------CCCCcCEEEEcc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKL---NIKQNRKSFKNVSVKDGSKGHA-------EEGPYDIIHLGA 70 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~---~~g~~n~~~v~~~~gD~~~~~~-------~~~~fD~I~i~~ 70 (156)
.|.+++++....+..+|+++|+++++++.|++|++. + ++.++ ++++++|..+..+ ...+||+|+++.
T Consensus 47 ~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~l~~~--v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nP 123 (260)
T 2ozv_A 47 AGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA-AFSAR--IEVLEADVTLRAKARVEAGLPDEHFHHVIMNP 123 (260)
T ss_dssp SSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT-TTGGG--EEEEECCTTCCHHHHHHTTCCTTCEEEEEECC
T ss_pred HhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC-CCcce--EEEEeCCHHHHhhhhhhhccCCCCcCEEEECC
Confidence 377777655555668999999999999999999987 5 55433 9999999987521 246799999984
Q ss_pred CCCc------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 71 ACIE------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 71 ~~~~------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+... +...+.+.|||||++++....
T Consensus 124 Py~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 124 PYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp CC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred CCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 3321 123456899999999997754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=82.87 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=67.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCc----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIE---- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~---- 74 (156)
.|.+++++...++ ++|+++|+++++++.|++|++.+ ++.++ ++++.+|+.+... ..++||+|+++.+...
T Consensus 60 ~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~-~~~~~--v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~ 135 (259)
T 3lpm_A 60 NGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYN-QLEDQ--IEIIEYDLKKITDLIPKERADIVTCNPPYFATPDT 135 (259)
T ss_dssp TTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHT-TCTTT--EEEECSCGGGGGGTSCTTCEEEEEECCCC------
T ss_pred hhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHC-CCccc--EEEEECcHHHhhhhhccCCccEEEECCCCCCCccc
Confidence 3667766544454 49999999999999999999984 77533 9999999876432 2478999999755321
Q ss_pred ----------------------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----------------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----------------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|+|||++++...
T Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 136 SLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp -----------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 22356789999999999764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.1e-09 Score=82.14 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=68.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCc---CEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPY---DIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~f---D~I~i~~~~~---- 73 (156)
.|.+++..... +..+|+++|+++++++.|++|++. .++.++ ++++++|..+..+ +.| |+|+++.+..
T Consensus 134 sG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~-~~l~~~--v~~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 134 SGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAER-HGVSDR--FFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSA 207 (284)
T ss_dssp TSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHH-TTCTTS--EEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGG
T ss_pred hhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-cCCCCc--eEEEECcchhhcc--cccCCCCEEEEcCCCCCccc
Confidence 36777644344 678999999999999999999998 487654 9999999876443 468 9999984332
Q ss_pred ---------------------chHHHHH-hhCCCCcEEEEEecc
Q psy14971 74 ---------------------EVPKEIL-AQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---------------------~i~~~l~-~~L~pGGrLv~~~~~ 95 (156)
.+-..+. +.|+|||+|++.++.
T Consensus 208 ~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 208 HLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp SCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred ccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 1234667 899999999998764
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.5e-09 Score=80.09 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=68.7
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.. ++.. +.+|+++|+++++++.|+++++. .++.++ ++++.+|+.+.....++||+|++.....+++
T Consensus 73 G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 147 (273)
T 3bus_A 73 GKPAVRLATAR--DVRVTGISISRPQVNQANARATA-AGLANR--VTFSYADAMDLPFEDASFDAVWALESLHHMPDRGR 147 (273)
T ss_dssp SHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHH-TTCTTT--EEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHH
T ss_pred CHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHh-cCCCcc--eEEEECccccCCCCCCCccEEEEechhhhCCCHHH
Confidence 555543 4433 37999999999999999999988 476533 9999999876433457899999998887664
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 148 ~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 148 ALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp HHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEEe
Confidence 356789999999998753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-09 Score=83.04 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=68.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.+++......+..+|+++|+++++++.|++|++.+ ++++ ++++.+|..+..+ .++||.|+++.+...
T Consensus 120 sG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~---v~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~l 194 (276)
T 2b3t_A 120 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL-AIKN---IHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHL 194 (276)
T ss_dssp TSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-TCCS---EEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHH
T ss_pred ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCc---eEEEEcchhhhcc-cCCccEEEECCCCCCcccccc
Confidence 3666664433345689999999999999999999984 8878 9999999876443 468999999854321
Q ss_pred -------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|+|||++++..+.
T Consensus 195 ~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 195 QQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp HSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred ChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 113457899999999997654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.92 E-value=8.5e-09 Score=77.36 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=66.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC--CCchH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA--CIEVP--- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~--~~~i~--- 76 (156)
|.++......++ +|+++|+++++++.|+++++.. + .+ ++++.+|..+.....++||+|++... ....+
T Consensus 50 G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~-~~---~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~ 122 (227)
T 1ve3_A 50 GGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-E-SN---VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELN 122 (227)
T ss_dssp SHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-T-CC---CEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHH
T ss_pred CHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-C-CC---ceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHH
Confidence 566655444444 9999999999999999999873 5 56 99999998763333468999999877 44332
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 123 ~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 123 QVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEec
Confidence 356789999999998765
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=81.16 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=62.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-----------cCCCCccceEEEEccCCCCCCCC-CCcCEEEE
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLN-----------IKQNRKSFKNVSVKDGSKGHAEE-GPYDIIHL 68 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-----------~g~~n~~~v~~~~gD~~~~~~~~-~~fD~I~i 68 (156)
|..+. +++. | .+|+++|++++|++.|+++.+.. ....+ ++++++|+.+..... ++||+|++
T Consensus 34 G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~d~~~l~~~~~~~fD~v~~ 107 (203)
T 1pjz_A 34 SQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG---IEIWCGDFFALTARDIGHCAAFYD 107 (203)
T ss_dssp SHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS---SEEEEECCSSSTHHHHHSEEEEEE
T ss_pred cHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc---cEEEECccccCCcccCCCEEEEEE
Confidence 55554 4443 3 69999999999999999886520 01246 999999998744333 68999999
Q ss_pred ccCCCchH--------HHHHhhCCCCcEEEEEe
Q psy14971 69 GAACIEVP--------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 69 ~~~~~~i~--------~~l~~~L~pGGrLv~~~ 93 (156)
.+....++ ..+.+.|||||++++..
T Consensus 108 ~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 108 RAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 87776554 24678999999944443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-09 Score=77.31 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---H
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---K 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~ 77 (156)
|.++..+...+ .+|+++|+++++++.|+++++. .+. .+ ++++.+|..+..+....||.|+++...+++. .
T Consensus 45 G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~-~~~~~~---~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~ 118 (192)
T 1l3i_A 45 GGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQR-HGLGDN---VTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILR 118 (192)
T ss_dssp SHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH-TTCCTT---EEEEESCHHHHHTTSCCEEEEEESCCTTCHHHHHH
T ss_pred CHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHH-cCCCcc---eEEEecCHHHhcccCCCCCEEEECCchHHHHHHHH
Confidence 55555443333 7999999999999999999988 477 56 9999999765334335899999998766554 4
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||++++...
T Consensus 119 ~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 119 IIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HHHHTEEEEEEEEEEEC
T ss_pred HHHHhcCCCcEEEEEec
Confidence 56789999999999764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.6e-10 Score=94.05 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=69.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc-----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~----- 74 (156)
|..++ +|++++..++|+++|+++++++.+++|+++ +|+ . ++++.+|+.+... ..++||+|+++++|+.
T Consensus 113 G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r-~G~-~---v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~r 187 (464)
T 3m6w_A 113 GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER-WGA-P---LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFR 187 (464)
T ss_dssp CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-HCC-C---CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTT
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCC-e---EEEEECCHHHhhhhccccCCEEEECCCcCCccccc
Confidence 55564 677777779999999999999999999999 486 4 8899999765321 2468999999988731
Q ss_pred -----------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -----------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|||||+||+.+++
T Consensus 188 r~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 188 KDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp TCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 123456789999999997653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=85.78 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=69.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---c-C-C--CCccceEEEEccCCCC------CCCCCCcCEEE
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLN---I-K-Q--NRKSFKNVSVKDGSKG------HAEEGPYDIIH 67 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~-g-~--~n~~~v~~~~gD~~~~------~~~~~~fD~I~ 67 (156)
|.++. ++...++.++|+++|+++++++.|+++++.. . | . .| ++++.+|+.+. ....++||+|+
T Consensus 95 G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~---v~~~~~d~~~l~~~~~~~~~~~~fD~V~ 171 (383)
T 4fsd_A 95 GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN---VRFLKGFIENLATAEPEGVPDSSVDIVI 171 (383)
T ss_dssp SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCC---EEEEESCTTCGGGCBSCCCCTTCEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCc---eEEEEccHHHhhhcccCCCCCCCEEEEE
Confidence 56664 5667778889999999999999999998752 0 2 2 47 99999998763 22346899999
Q ss_pred EccCCCchH------HHHHhhCCCCcEEEEEe
Q psy14971 68 LGAACIEVP------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 68 i~~~~~~i~------~~l~~~L~pGGrLv~~~ 93 (156)
++.....++ ..+.+.|||||+|++..
T Consensus 172 ~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 172 SNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 999876553 46789999999999964
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=80.78 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=68.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCch----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---- 75 (156)
|.++. +++..+ .+|+++|+++++++.|+++++. .++. + ++++.+|..+. .++||+|++.....++
T Consensus 84 G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~ 154 (302)
T 3hem_A 84 GSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDE-VDSPRR---KEVRIQGWEEF---DEPVDRIVSLGAFEHFADGA 154 (302)
T ss_dssp SHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHH-SCCSSC---EEEEECCGGGC---CCCCSEEEEESCGGGTTCCS
T ss_pred cHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHh-cCCCCc---eEEEECCHHHc---CCCccEEEEcchHHhcCccc
Confidence 55664 444445 7999999999999999999988 4776 6 99999998764 5789999999887666
Q ss_pred --------H---HHHHhhCCCCcEEEEEecc
Q psy14971 76 --------P---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --------~---~~l~~~L~pGGrLv~~~~~ 95 (156)
+ ..+.+.|||||++++....
T Consensus 155 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 155 GDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp SCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 2 3567899999999997653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-09 Score=82.73 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=68.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. +++..+ .+|+++|+++++++.|+++++. .++. + ++++.+|+.+.....+.||+|++......++
T Consensus 129 G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~ 202 (312)
T 3vc1_A 129 GGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARE-LRIDDH---VRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHD 202 (312)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH-TTCTTT---EEEEECCTTSCCCCTTCEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH-cCCCCc---eEEEECChhcCCCCCCCEeEEEECCchhhCCHHH
Confidence 55664 444443 7999999999999999999998 4775 5 9999999976433457899999987765442
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 203 ~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 203 LFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEc
Confidence 457889999999998764
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-09 Score=77.96 Aligned_cols=86 Identities=17% Similarity=0.034 Sum_probs=64.7
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCch-
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEV- 75 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i- 75 (156)
.|.++. ++..++ .++|+++|+++++++.+.++.+. . .| +.++.+|+... .+..++||+|+++...+.-
T Consensus 68 tG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-~--~~---v~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~~~~ 140 (210)
T 1nt2_A 68 SGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-R--NN---IIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQI 140 (210)
T ss_dssp TSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-C--SS---EEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHH
T ss_pred CCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-C--CC---eEEEEcCCCCchhhcccccceeEEEEeccChhHH
Confidence 366665 566666 68999999999998877776655 2 47 99999998763 2223689999998654432
Q ss_pred ---HHHHHhhCCCCcEEEEEe
Q psy14971 76 ---PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ---~~~l~~~L~pGGrLv~~~ 93 (156)
...+.+.|||||+|++.+
T Consensus 141 ~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 141 EILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEE
Confidence 246788999999999985
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.2e-09 Score=75.84 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=66.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++...... +.+|+++|+++++++.|+++++.. +.++ ++++.+|..+... ..+||+|++......++
T Consensus 44 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~-~~~~---~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~ 116 (199)
T 2xvm_A 44 GRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIE-NLDN---LHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIP 116 (199)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH-TCTT---EEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHH
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhC-CCCC---cEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHH
Confidence 5555433333 469999999999999999999884 7777 9999999876433 57899999998766543
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||++++..
T Consensus 117 ~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 117 GLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp HHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEE
Confidence 35678999999988754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-09 Score=85.51 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=65.8
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---------HHHH
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---------KEIL 80 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---------~~l~ 80 (156)
...+..+|+++|+++++++.|++++.. .+..++ ++++.+|+.+.... ++||+|++......++ ..+.
T Consensus 139 ~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~ 214 (305)
T 3ocj_A 139 SACPGVQLVGIDYDPEALDGATRLAAG-HALAGQ--ITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFW 214 (305)
T ss_dssp TTCTTCEEEEEESCHHHHHHHHHHHTT-STTGGG--EEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCHHHHHHHHHHHHh-cCCCCc--eEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHH
Confidence 345678999999999999999999988 476554 99999998774333 7899999988766543 4567
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
+.|||||+|++...
T Consensus 215 ~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 215 QALKPGGALVTSFL 228 (305)
T ss_dssp HHEEEEEEEEEECC
T ss_pred HhcCCCeEEEEEec
Confidence 89999999999764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=4e-09 Score=82.43 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=68.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCC-CCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++...... +.+|+++|+++++++.|+++++. .++ .+ ++++.+|+.+.. ...++||+|++......++
T Consensus 80 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~ 153 (285)
T 4htf_A 80 GQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEA-KGVSDN---MQFIHCAAQDVASHLETPVDLILFHAVLEWVADPR 153 (285)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--CCGGG---EEEEESCGGGTGGGCSSCEEEEEEESCGGGCSCHH
T ss_pred hHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh-cCCCcc---eEEEEcCHHHhhhhcCCCceEEEECchhhcccCHH
Confidence 5555433333 47999999999999999999988 477 46 999999987643 2357899999998876554
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 154 ~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 154 SVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEe
Confidence 467889999999999764
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=82.46 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=55.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~ 73 (156)
|..++ +|+++++.++|+++|+++.+++.+++|+++ +|+.| ++++.+|+.+.... ..+||+|+++++|+
T Consensus 114 G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r-~g~~~---v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcS 185 (309)
T 2b9e_A 114 GNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR-AGVSC---CELAEEDFLAVSPSDPRYHEVHYILLDPSCS 185 (309)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEECCGGGSCTTCGGGTTEEEEEECCCCC
T ss_pred hHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCe---EEEEeCChHhcCccccccCCCCEEEEcCCcC
Confidence 55554 677777789999999999999999999999 59888 99999998764332 25799999998773
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-09 Score=77.76 Aligned_cols=87 Identities=16% Similarity=0.033 Sum_probs=68.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCCch--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~~i-- 75 (156)
|.++. ++..+++.++|+++|+++++++.++++++. . .| ++++.+|+.+.. +....||+|+++.+.+..
T Consensus 85 G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-~--~~---v~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~~ 158 (227)
T 1g8a_A 85 GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-R--RN---IVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAK 158 (227)
T ss_dssp TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-C--TT---EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-c--CC---CEEEEccCCCcchhhcccCCceEEEECCCCHhHHH
Confidence 66665 566778789999999999999999999876 3 57 999999987621 113579999998875533
Q ss_pred --HHHHHhhCCCCcEEEEEec
Q psy14971 76 --PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|||||++++...
T Consensus 159 ~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 159 ILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEe
Confidence 3457789999999999753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=83.57 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=64.1
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC---------------------------------------
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--------------------------------------- 40 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--------------------------------------- 40 (156)
.|.+++. +...+ ..+|+++|+++.+++.|+++++.. +.
T Consensus 57 ~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 134 (292)
T 3g07_A 57 VGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHY-LSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASR 134 (292)
T ss_dssp TCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------------------
T ss_pred CCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhh-hhhhccccccccccccccccccccccccccccccchhhhcc
Confidence 3667764 44443 479999999999999999998762 32
Q ss_pred -------------------CCccceEEEEccCCCCC-----CCCCCcCEEEEccCCCch------------HHHHHhhCC
Q psy14971 41 -------------------NRKSFKNVSVKDGSKGH-----AEEGPYDIIHLGAACIEV------------PKEILAQLK 84 (156)
Q Consensus 41 -------------------~n~~~v~~~~gD~~~~~-----~~~~~fD~I~i~~~~~~i------------~~~l~~~L~ 84 (156)
.| |+++.+|..... ...+.||+|++......+ ...+.+.|+
T Consensus 135 g~~~~p~~~~~~~~~~~~p~~---v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~Lk 211 (292)
T 3g07_A 135 GPIAAPQVPLDGADTSVFPNN---VVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLR 211 (292)
T ss_dssp -------CCSSTTCCSSTTTT---EEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred Ccccccccccccccccccccc---ceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhC
Confidence 36 999999987543 135789999998876333 246789999
Q ss_pred CCcEEEEEe
Q psy14971 85 PGGRLVFHK 93 (156)
Q Consensus 85 pGGrLv~~~ 93 (156)
|||+|++..
T Consensus 212 pGG~lil~~ 220 (292)
T 3g07_A 212 PGGILVLEP 220 (292)
T ss_dssp EEEEEEEEC
T ss_pred CCcEEEEec
Confidence 999999954
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=80.81 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=69.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-----------CCCCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-----------AEEGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-----------~~~~~fD~I~i~~ 70 (156)
|.++.++....|+++|+++|+++.|++.|++++.. ..+ ++++.+|..+.. .+...||+|++..
T Consensus 92 G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~---v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~ 165 (274)
T 2qe6_A 92 QNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPN---TAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVG 165 (274)
T ss_dssp SCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTT---EEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETT
T ss_pred ChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCC---eEEEEeeCCCchhhhccchhhccCCCCCCEEEEEec
Confidence 66666666667789999999999999999999854 246 999999986521 1124799999998
Q ss_pred CCCchH--------HHHHhhCCCCcEEEEEecc
Q psy14971 71 ACIEVP--------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 71 ~~~~i~--------~~l~~~L~pGGrLv~~~~~ 95 (156)
.++.++ ..+.+.|+|||+|++....
T Consensus 166 vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 166 MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 877654 2567899999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=72.62 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=67.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCC-ccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNR-KSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n-~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
|.++..+... ..+|+++|+++++++.|+++++. .+.++ + ++++.+|..+..+ ..+||+|+++.+...
T Consensus 64 G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~-~~~~~~~--~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~ 137 (194)
T 1dus_A 64 GVIGIALADE--VKSTTMADINRRAIKLAKENIKL-NNLDNYD--IRVVHSDLYENVK-DRKYNKIITNPPIRAGKEVLH 137 (194)
T ss_dssp SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHH-TTCTTSC--EEEEECSTTTTCT-TSCEEEEEECCCSTTCHHHHH
T ss_pred CHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHH-cCCCccc--eEEEECchhcccc-cCCceEEEECCCcccchhHHH
Confidence 5555543333 57999999999999999999988 37653 3 8999999887544 468999999887653
Q ss_pred -hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+...+.+.|+|||++++....
T Consensus 138 ~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 138 RIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp HHHHHHHHHEEEEEEEEEEEES
T ss_pred HHHHHHHHHcCCCCEEEEEECC
Confidence 124567899999999998764
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-09 Score=77.49 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---HH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---KE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---~~ 78 (156)
|.++..+... +..+|+++|+++++++.|+++++. .+..+ ++++.+|..+.. ...||+|+++...+.+. +.
T Consensus 72 G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~~~--~~~fD~i~~~~~~~~~~~~l~~ 144 (205)
T 3grz_A 72 GILAIAAHKL-GAKSVLATDISDESMTAAEENAAL-NGIYD---IALQKTSLLADV--DGKFDLIVANILAEILLDLIPQ 144 (205)
T ss_dssp SHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH-TTCCC---CEEEESSTTTTC--CSCEEEEEEESCHHHHHHHGGG
T ss_pred CHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH-cCCCc---eEEEeccccccC--CCCceEEEECCcHHHHHHHHHH
Confidence 6666544443 347999999999999999999998 48888 999999987643 36899999988766543 34
Q ss_pred HHhhCCCCcEEEEE
Q psy14971 79 ILAQLKPGGRLVFH 92 (156)
Q Consensus 79 l~~~L~pGGrLv~~ 92 (156)
+.+.|+|||++++.
T Consensus 145 ~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 145 LDSHLNEDGQVIFS 158 (205)
T ss_dssp SGGGEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEE
Confidence 56889999999996
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=78.56 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=64.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI-- 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l-- 79 (156)
|.++..+.. +..+|+++|+++++++.|+++++. .++++ ++++.+|..+..+ ..+||.|+++.. ....+.+
T Consensus 47 G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~---~~~~~~d~~~~~~-~~~~D~i~~~~~-~~~~~~l~~ 118 (183)
T 2yxd_A 47 GGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAK-FNIKN---CQIIKGRAEDVLD-KLEFNKAFIGGT-KNIEKIIEI 118 (183)
T ss_dssp SHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHH-TTCCS---EEEEESCHHHHGG-GCCCSEEEECSC-SCHHHHHHH
T ss_pred CHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHH-cCCCc---EEEEECCcccccc-CCCCcEEEECCc-ccHHHHHHH
Confidence 555554333 568999999999999999999998 48778 9999999876333 368999999988 4444322
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
...+ |||++++....
T Consensus 119 ~~~~-~gG~l~~~~~~ 133 (183)
T 2yxd_A 119 LDKK-KINHIVANTIV 133 (183)
T ss_dssp HHHT-TCCEEEEEESC
T ss_pred HhhC-CCCEEEEEecc
Confidence 2233 99999998753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.8e-09 Score=80.34 Aligned_cols=86 Identities=13% Similarity=-0.010 Sum_probs=61.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh--------c--------CCCCccceEEEEccCCCCCCC-CCCcC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN--------I--------KQNRKSFKNVSVKDGSKGHAE-EGPYD 64 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~--------~--------g~~n~~~v~~~~gD~~~~~~~-~~~fD 64 (156)
|..+......| .+|+|+|+++.+++.|+++.... . ...+ ++++++|+.+.... .++||
T Consensus 80 G~~~~~La~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~D~~~l~~~~~~~FD 154 (252)
T 2gb4_A 80 AIEMKWFADRG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS---ISLYCCSIFDLPRANIGKFD 154 (252)
T ss_dssp CTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS---EEEEESCTTTGGGGCCCCEE
T ss_pred cHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc---eEEEECccccCCcccCCCEE
Confidence 45554322233 59999999999999998776310 0 1246 99999999874433 27899
Q ss_pred EEEEccCCCchH--------HHHHhhCCCCcEEEEE
Q psy14971 65 IIHLGAACIEVP--------KEILAQLKPGGRLVFH 92 (156)
Q Consensus 65 ~I~i~~~~~~i~--------~~l~~~L~pGGrLv~~ 92 (156)
+|+..+....++ ..+.+.|||||+|++.
T Consensus 155 ~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 155 RIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp EEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 999887765543 3467899999999653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=79.89 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=68.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. ++...+ .+|+++|+++.+++.|+++++.. ++..+ ++++.+|+.+.....++||+|++.....+++
T Consensus 94 G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-~~~~~--~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 168 (297)
T 2o57_A 94 GGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQA-GLADN--ITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK 168 (297)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHH-TCTTT--EEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred CHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc-CCCcc--eEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH
Confidence 55554 444443 69999999999999999999884 76432 9999999876433457899999998876553
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 169 ~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 169 VFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEEe
Confidence 467899999999999754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.5e-09 Score=79.03 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=67.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch--H--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV--P-- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i--~-- 76 (156)
|.++. ++... +.+|+++|+++++++.|++++.. . .+ ++++.+|+.+.....++||+|++.....++ +
T Consensus 67 G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~--~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 138 (266)
T 3ujc_A 67 GGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG-N--NK---IIFEANDILTKEFPENNFDLIYSRDAILALSLENK 138 (266)
T ss_dssp SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS-C--TT---EEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHH
T ss_pred CHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc-C--CC---eEEEECccccCCCCCCcEEEEeHHHHHHhcChHHH
Confidence 55554 34444 47999999999999999999876 2 57 999999997743345789999999988877 3
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 139 ~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 139 NKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEEe
Confidence 356789999999999763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-09 Score=79.87 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH--------HHHhhCCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--------EILAQLKP 85 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--------~l~~~L~p 85 (156)
..+|+++|+++++++.|++++.. .+..+ ++++.+|+.+.....++||+|++......+++ .+.+.|+|
T Consensus 102 ~~~v~~vD~s~~~~~~a~~~~~~-~~~~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 177 (241)
T 2ex4_A 102 FREVDMVDITEDFLVQAKTYLGE-EGKRV---RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 177 (241)
T ss_dssp CSEEEEEESCHHHHHHHHHHTGG-GGGGE---EEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHhhh-cCCce---EEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999999999999999987 34446 99999998664444568999999988766542 45789999
Q ss_pred CcEEEEEec
Q psy14971 86 GGRLVFHKG 94 (156)
Q Consensus 86 GGrLv~~~~ 94 (156)
||+|++...
T Consensus 178 gG~l~i~~~ 186 (241)
T 2ex4_A 178 NGIIVIKDN 186 (241)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEc
Confidence 999999654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=79.51 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=68.7
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.. +...++..+|+++|+++.+++.|++++.. .+. | ++++.+|+.+. +..++||.|++......++
T Consensus 34 G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~-~---v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~ 107 (284)
T 3gu3_A 34 GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LPY-D---SEFLEGDATEI-ELNDKYDIAICHAFLLHMTTPET 107 (284)
T ss_dssp THHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-SSS-E---EEEEESCTTTC-CCSSCEEEEEEESCGGGCSSHHH
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-cCC-c---eEEEEcchhhc-CcCCCeeEEEECChhhcCCCHHH
Confidence 556654 33443358999999999999999999987 354 6 99999999863 3346899999998876554
Q ss_pred --HHHHhhCCCCcEEEEEecc
Q psy14971 77 --KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|||||++++....
T Consensus 108 ~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 108 MLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp HHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHcCCCCEEEEEecc
Confidence 3567899999999987643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=79.09 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=66.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..+... +.+|+++|+++.+++.|+++++.. +. + ++++.+|+.+... .++||+|++......++
T Consensus 132 G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~ 203 (286)
T 3m70_A 132 GRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE-NL-N---ISTALYDINAANI-QENYDFIVSTVVFMFLNRERVP 203 (286)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-TC-C---EEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHH
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc-CC-c---eEEEEeccccccc-cCCccEEEEccchhhCCHHHHH
Confidence 5666543333 369999999999999999999984 76 7 9999999876433 67899999998776442
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 204 ~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 204 SIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEEe
Confidence 356789999999887653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=79.99 Aligned_cols=86 Identities=8% Similarity=0.015 Sum_probs=66.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--CCCCccceEEEEccCCCCCCCC------CCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNI--KQNRKSFKNVSVKDGSKGHAEE------GPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--g~~n~~~v~~~~gD~~~~~~~~------~~fD~I~i~~~~ 72 (156)
|.++. ++....+..+|+++|+++.+++.|+++++. . ...+ ++++++|+.+..... ++||+|++....
T Consensus 48 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~---v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l 123 (299)
T 3g5t_A 48 GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG-SPDTYKN---VSFKISSSDDFKFLGADSVDKQKIDMITAVECA 123 (299)
T ss_dssp THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHH-CC-CCTT---EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCG
T ss_pred CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh-ccCCCCc---eEEEEcCHHhCCccccccccCCCeeEEeHhhHH
Confidence 55554 344445679999999999999999999987 3 2356 999999997643333 689999999877
Q ss_pred Cch-----HHHHHhhCCCCcEEEE
Q psy14971 73 IEV-----PKEILAQLKPGGRLVF 91 (156)
Q Consensus 73 ~~i-----~~~l~~~L~pGGrLv~ 91 (156)
+.+ ...+.+.|+|||+|++
T Consensus 124 ~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 124 HWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp GGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhCHHHHHHHHHHhcCCCcEEEE
Confidence 654 2457889999999998
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=85.54 Aligned_cols=88 Identities=26% Similarity=0.350 Sum_probs=67.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCc----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIE---- 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~---- 74 (156)
|..+. +++.. +.++|+++|+++.+++.+++|+++ .|+ + ++++.+|+.+.. .....||+|+++++|+.
T Consensus 258 G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~-~g~-~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 258 GGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKR-LGM-K---ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVI 331 (429)
T ss_dssp CHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHH-TTC-C---CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGT
T ss_pred hHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHH-cCC-C---eEEEeCchhhchhhcccCCCCEEEEeCCCCccccc
Confidence 55554 45554 448999999999999999999998 486 5 889999987642 12367999999987742
Q ss_pred ------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+.+.+.+.|||||+|++..++
T Consensus 332 ~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 332 RRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp TTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 123457889999999997753
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=82.89 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.+++.+... +.+|+++|+++.+++.|++|++.+ +. + ++++.+|+.+......+||.|+++.+.+.
T Consensus 245 G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~-~~-~---v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~ 317 (381)
T 3dmg_A 245 GALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN-AL-K---AQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILD 317 (381)
T ss_dssp STTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT-TC-C---CEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCH
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc-CC-C---eEEEEcchhhccccCCCeEEEEECCchhhcccccHH
Confidence 6666544443 369999999999999999999984 65 4 89999999876555578999999876653
Q ss_pred ----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|+|||+|++...
T Consensus 318 ~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 318 VAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCcCcEEEEEEc
Confidence 22456789999999999764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-09 Score=82.21 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=66.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI---- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~---- 73 (156)
|.++..+....+..+|+++|+++++++.|++++... +.-++ ++++.+|+.+.++. ..+||+|+++...+
T Consensus 87 G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~r---v~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~ 163 (275)
T 1iy9_A 87 GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPR---VDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPA 163 (275)
T ss_dssp CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTT---EEEEESCSHHHHHTCCSCEEEEEESCSSCCSCC
T ss_pred HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCc---eEEEECcHHHHHhhCCCCeeEEEECCCCCCCcc
Confidence 555554433334579999999999999999998641 12245 99999998653322 46799999988653
Q ss_pred ------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
++-+.+.+.|+|||++++....
T Consensus 164 ~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 164 VNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp CCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred hhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 2335678999999999997643
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=84.41 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=65.2
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHH-------HHHHhhhcC--CCCccceEEEEccCCC-CCC---CCCCcCEE
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKN-------QNNKKLNIK--QNRKSFKNVSVKDGSK-GHA---EEGPYDII 66 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A-------~~~l~~~~g--~~n~~~v~~~~gD~~~-~~~---~~~~fD~I 66 (156)
.|.+++. |...+ ..+|+|+|+++++++.| ++|++. .| ..| ++++.+|... +++ ..++||+|
T Consensus 253 sG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~-~Gl~~~n---V~~i~gD~~~~~~~~~~~~~~FDvI 327 (433)
T 1u2z_A 253 VGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKL-YGMRLNN---VEFSLKKSFVDNNRVAELIPQCDVI 327 (433)
T ss_dssp TSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHH-TTBCCCC---EEEEESSCSTTCHHHHHHGGGCSEE
T ss_pred cCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHH-cCCCCCc---eEEEEcCccccccccccccCCCCEE
Confidence 4777765 44444 46899999999999999 889888 48 568 9999987653 221 14689999
Q ss_pred EEccCC--CchH---HHHHhhCCCCcEEEEE
Q psy14971 67 HLGAAC--IEVP---KEILAQLKPGGRLVFH 92 (156)
Q Consensus 67 ~i~~~~--~~i~---~~l~~~L~pGGrLv~~ 92 (156)
+++... ++++ ..+.++|||||+|++.
T Consensus 328 vvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 328 LVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp EECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred EEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 997544 2333 3678999999999997
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-09 Score=75.78 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=66.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCCC----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACI---- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~---- 73 (156)
|.++..+...++ .|+++|+++++++.|++|++.. +. + ++++.+|+.+..+. ..+||.|+++.+..
T Consensus 53 G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~ 125 (171)
T 1ws6_A 53 GAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT-GL-G---ARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLA 125 (171)
T ss_dssp CHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH-TC-C---CEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTT
T ss_pred CHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHc-CC-c---eEEEeccHHHHHHhhhccCCceEEEEECCCCchhHH
Confidence 666655444454 4999999999999999999984 77 7 99999998653221 23799999996542
Q ss_pred chHHHHH--hhCCCCcEEEEEeccCC
Q psy14971 74 EVPKEIL--AQLKPGGRLVFHKGLHN 97 (156)
Q Consensus 74 ~i~~~l~--~~L~pGGrLv~~~~~~~ 97 (156)
.+.+.+. +.|+|||++++......
T Consensus 126 ~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 126 ALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 3334556 88999999999876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-09 Score=76.56 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=65.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCC----CCCCcCEEEEccCCC--c
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACI--E 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~--~ 74 (156)
|.+++.+... +..+|+++|+++++++.|++|++.. ++ ++ ++++.+|+.+..+ ...+||+|+++.+.. .
T Consensus 56 G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~---~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~ 130 (187)
T 2fhp_A 56 GGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAIT-KEPEK---FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE 130 (187)
T ss_dssp CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHH-TCGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC
T ss_pred CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHh-CCCcc---eEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchh
Confidence 6666533332 3479999999999999999999984 76 36 9999999865322 146899999987732 2
Q ss_pred hH---HHH--HhhCCCCcEEEEEeccC
Q psy14971 75 VP---KEI--LAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 i~---~~l--~~~L~pGGrLv~~~~~~ 96 (156)
.+ ..+ .+.|+|||++++.....
T Consensus 131 ~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 131 IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 22 234 56799999999987643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-08 Score=77.85 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=63.3
Q ss_pred cCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------HHHHh
Q psy14971 11 KGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------KEILA 81 (156)
Q Consensus 11 ~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~~l~~ 81 (156)
..++.+|+++|+++++++.|++++.. .+. .+ ++++.+|+.+.. ...+||+|++......++ ..+.+
T Consensus 85 ~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~ 159 (235)
T 3lcc_A 85 ASPERFVVGLDISESALAKANETYGS-SPKAEY---FSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYE 159 (235)
T ss_dssp CBTTEEEEEECSCHHHHHHHHHHHTT-SGGGGG---EEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHH
T ss_pred HhCCCeEEEEECCHHHHHHHHHHhhc-cCCCcc---eEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHH
Confidence 34567999999999999999999976 232 45 999999998744 345899999988876554 35678
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.|||||+|++..-
T Consensus 160 ~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 160 LLKPDGELITLMY 172 (235)
T ss_dssp HEEEEEEEEEEEC
T ss_pred HCCCCcEEEEEEe
Confidence 9999999998654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=75.79 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=64.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC----CCCCCCCcCEEEEccCCC---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK----GHAEEGPYDIIHLGAACI--- 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~----~~~~~~~fD~I~i~~~~~--- 73 (156)
|.++. ++...+ .++|+++|+++++++.|+++++. . +| +.++.+|+.+ .... ..||+|+.+...+
T Consensus 86 G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~-~--~~---v~~~~~d~~~~~~~~~~~-~~~D~v~~~~~~~~~~ 157 (230)
T 1fbn_A 86 GTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE-R--EN---IIPILGDANKPQEYANIV-EKVDVIYEDVAQPNQA 157 (230)
T ss_dssp SHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT-C--TT---EEEEECCTTCGGGGTTTS-CCEEEEEECCCSTTHH
T ss_pred CHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc-C--CC---eEEEECCCCCcccccccC-ccEEEEEEecCChhHH
Confidence 66665 556656 68999999999999999999876 2 67 9999999876 2222 6799999765443
Q ss_pred -chHHHHHhhCCCCcEEEEEe
Q psy14971 74 -EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 -~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+...+.+.|+|||++++..
T Consensus 158 ~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 158 EILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEEE
Confidence 12456788999999999964
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=76.25 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=64.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++...... ..+|+++|+++++++.|++++.. . .+ ++++.+|+.+.. ..++||+|++.....+++
T Consensus 63 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-~--~~---~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~ 133 (216)
T 3ofk_A 63 GAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKR-W--SH---ISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQM 133 (216)
T ss_dssp SHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTT-C--SS---EEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHH
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHhccc-C--CC---eEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHH
Confidence 5555433332 36999999999999999999876 2 36 999999998754 457899999998776554
Q ss_pred ----HHHHhhCCCCcEEEEEe
Q psy14971 77 ----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||+|++..
T Consensus 134 ~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 134 RTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp HHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 24678999999999954
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-09 Score=81.14 Aligned_cols=87 Identities=15% Similarity=0.037 Sum_probs=62.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCC-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~----- 73 (156)
+|..+.......+ .+|++||+++++++.|+++.+. .+ .+ ++++.+|+.+.. ....+||.|+.+....
T Consensus 71 ~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~-~~-~~---~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~ 144 (236)
T 3orh_A 71 MAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-QT-HK---VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETW 144 (236)
T ss_dssp TSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGG-CS-SE---EEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGT
T ss_pred ccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhh-CC-Cc---eEEEeehHHhhcccccccCCceEEEeeeecccchh
Confidence 4666543322233 6899999999999999999987 34 35 899999975422 2346899999876432
Q ss_pred chH------HHHHhhCCCCcEEEEEe
Q psy14971 74 EVP------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 ~i~------~~l~~~L~pGGrLv~~~ 93 (156)
+++ +.+.+.|||||+|++..
T Consensus 145 ~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 145 HTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hhcchhhhhhhhhheeCCCCEEEEEe
Confidence 222 35688999999999854
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=76.83 Aligned_cols=76 Identities=16% Similarity=0.064 Sum_probs=61.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGG 87 (156)
..+|+++|+++++++.|++++.. +..+ ++++.+|+.+.....++||+|++....+.++ ..+.+.|||||
T Consensus 61 ~~~v~~vD~s~~~~~~a~~~~~~--~~~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 135 (263)
T 2yqz_A 61 GYRYIALDADAAMLEVFRQKIAG--VDRK---VQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGG 135 (263)
T ss_dssp TCEEEEEESCHHHHHHHHHHTTT--SCTT---EEEEESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhhc--cCCc---eEEEEcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCc
Confidence 47999999999999999999832 4467 9999999876433457899999998876653 35678999999
Q ss_pred EEEEEec
Q psy14971 88 RLVFHKG 94 (156)
Q Consensus 88 rLv~~~~ 94 (156)
++++...
T Consensus 136 ~l~~~~~ 142 (263)
T 2yqz_A 136 ALLEGWD 142 (263)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9998743
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.3e-09 Score=84.57 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=65.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCc-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~----- 74 (156)
|.++.......+..+|+++|+++++++.||+++.. ....+ ++++.+|+.+... ..++||+|+++...+.
T Consensus 101 G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~-~~~~r---v~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~ 176 (317)
T 3gjy_A 101 CTMARYFADVYPQSRNTVVELDAELARLSREWFDI-PRAPR---VKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQN 176 (317)
T ss_dssp GHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC-CCTTT---EEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGG
T ss_pred CHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc-cCCCc---eEEEECcHHHHHhhccCCCCCEEEECCCCccccchh
Confidence 44554333324567999999999999999999865 23346 9999999875432 2468999999865431
Q ss_pred -----hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-..+.+.|+|||+|++....
T Consensus 177 L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 177 FTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp GSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 124567899999999998863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.2e-09 Score=76.09 Aligned_cols=90 Identities=13% Similarity=0.170 Sum_probs=66.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCC-CCCCcCEEEEccCCC-----c
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI-----E 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~-----~ 74 (156)
|.+++.+... +..+|+++|+++++++.|++|++. .++. + ++++.+|+.+..+ ....||+|+++.+.. .
T Consensus 43 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~---~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~~~~~~ 117 (177)
T 2esr_A 43 GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIM-TKAENR---FTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVA 117 (177)
T ss_dssp CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHT-TTCGGG---EEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHH
T ss_pred CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHH-cCCCCc---eEEEECcHHHhHHhhcCCCCEEEECCCCCcchHHH
Confidence 6666543333 347999999999999999999988 4764 5 9999999865322 235699999987652 1
Q ss_pred hHHHHH--hhCCCCcEEEEEeccC
Q psy14971 75 VPKEIL--AQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 i~~~l~--~~L~pGGrLv~~~~~~ 96 (156)
....+. +.|+|||++++.....
T Consensus 118 ~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 118 TIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHhCCCcCCCcEEEEEECCc
Confidence 223444 7899999999987643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-09 Score=82.31 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=66.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--- 77 (156)
|.+++.+...+ ++|+++|+++++++.|++|++. .++ ++ ++++++|+.+.. ...+||+|+++.+......
T Consensus 90 G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~-~~~~~~---~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~ 162 (241)
T 3gdh_A 90 GGNTIQFALTG--MRVIAIDIDPVKIALARNNAEV-YGIADK---IEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATA 162 (241)
T ss_dssp SHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-TTCGGG---EEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGGS
T ss_pred CHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHH-cCCCcC---eEEEECChHHhc-ccCCCCEEEECCCcCCcchhhh
Confidence 66665444433 8999999999999999999998 487 46 999999987643 4578999999988775442
Q ss_pred ---HHHhhCCCCcEEEEEe
Q psy14971 78 ---EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~~ 93 (156)
.+.+.|+|||++++..
T Consensus 163 ~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 163 ETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSBCTTTSCSSCHHHHHHH
T ss_pred HHHHHHhhcCCcceeHHHH
Confidence 3567899999977653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-09 Score=84.43 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=71.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---CC-------------CCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---EE-------------GPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~~-------------~~fD 64 (156)
.|.+++.+.. ...+|+++|+++++++.|++|++.+ |++| ++++.+|+.+..+ .. ..||
T Consensus 224 ~G~~~l~la~--~~~~V~gvd~~~~ai~~a~~n~~~n-g~~~---v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD 297 (369)
T 3bt7_A 224 NGNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAAN-HIDN---VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 297 (369)
T ss_dssp TSHHHHHHGG--GSSEEEEECCCHHHHHHHHHHHHHT-TCCS---EEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEE
T ss_pred CCHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHc-CCCc---eEEEECCHHHHHHHHhhccccccccccccccCCCC
Confidence 3677764433 2379999999999999999999985 8888 9999999865321 11 3799
Q ss_pred EEEEccCCCchHHHHHhhCCCCcEEEEEeccC
Q psy14971 65 IIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+|+++.+...+.+.+.+.|+++|++++..+..
T Consensus 298 ~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 298 TIFVDPPRSGLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp EEEECCCTTCCCHHHHHHHTTSSEEEEEESCH
T ss_pred EEEECcCccccHHHHHHHHhCCCEEEEEECCH
Confidence 99999988777778888999999999987643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=77.37 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=65.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......++ .+|+++|+++++++.|++++.. .+ ++++.+|+.+.....++||+|++......++
T Consensus 56 G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 127 (253)
T 3g5l_A 56 GWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTTS----PV---VCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDI 127 (253)
T ss_dssp CHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCCC----TT---EEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHH
T ss_pred CHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhcc----CC---eEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHH
Confidence 556654444443 3999999999999999988752 46 9999999876433357899999998876553
Q ss_pred -HHHHhhCCCCcEEEEEec
Q psy14971 77 -KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++.+.
T Consensus 128 l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 128 CKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEeC
Confidence 457889999999999743
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.78 E-value=9.5e-09 Score=83.30 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=66.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCC-ccceEEEEccCCCCCCC----CCCcCEEEEccCCC--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNR-KSFKNVSVKDGSKGHAE----EGPYDIIHLGAACI-- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n-~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~-- 73 (156)
.|.+++.+...+ .+|+++|+++++++.|++|++.+ ++++ + ++++++|+.+.... ...||+|+++.+.-
T Consensus 164 tG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~-gl~~~~--v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~ 238 (332)
T 2igt_A 164 TGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLA-GLEQAP--IRWICEDAMKFIQREERRGSTYDIILTDPPKFGR 238 (332)
T ss_dssp TCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHH-TCTTSC--EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEE
T ss_pred cCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc-CCCccc--eEEEECcHHHHHHHHHhcCCCceEEEECCccccC
Confidence 366776655544 49999999999999999999985 7652 2 89999998653321 35799999976631
Q ss_pred --------------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 --------------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 --------------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.+.|+|||++++...
T Consensus 239 ~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 239 GTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 122345789999999777654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-09 Score=80.07 Aligned_cols=86 Identities=14% Similarity=0.014 Sum_probs=62.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEE-ccCC--Cc--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHL-GAAC--IE-- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i-~~~~--~~-- 74 (156)
|.++......++ .+|+++|++++|++.|+++.+. .+ .+ ++++.+|+.+. ....++||+|++ ..+. +.
T Consensus 72 G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~-~~-~~---v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~ 145 (236)
T 1zx0_A 72 AIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-QT-HK---VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWH 145 (236)
T ss_dssp SHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-CS-SE---EEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTT
T ss_pred CHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHh-cC-CC---eEEEecCHHHhhcccCCCceEEEEECCcccchhhhh
Confidence 666654433332 4899999999999999999987 36 46 99999998654 123468999999 3332 11
Q ss_pred ------hHHHHHhhCCCCcEEEEEe
Q psy14971 75 ------VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 ------i~~~l~~~L~pGGrLv~~~ 93 (156)
+...+.+.|||||+|++..
T Consensus 146 ~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 146 THQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 1245689999999999864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.78 E-value=9.6e-08 Score=70.60 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=64.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------h
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------V 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------i 75 (156)
|.++...... +.+|+++|+++++++.|+++++.. +. + ++++.+|+.+.....++||.|++...... +
T Consensus 41 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~ 113 (202)
T 2kw5_A 41 GRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEK-GV-K---ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQL 113 (202)
T ss_dssp THHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH-TC-C---EEEECCBTTTBSCCTTTCSEEEEECCCCCHHHHHHH
T ss_pred CHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhc-CC-c---eEEEEcChhhcCCCcCCccEEEEEhhcCCHHHHHHH
Confidence 4555433332 469999999999999999999884 65 6 99999998764333568999998643221 1
Q ss_pred HHHHHhhCCCCcEEEEEecc
Q psy14971 76 PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~~ 95 (156)
...+.+.|+|||++++....
T Consensus 114 l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 114 YPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp HHHHHTTCCSSEEEEEEEEC
T ss_pred HHHHHHhcCCCcEEEEEEec
Confidence 23567899999999998653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.1e-10 Score=82.64 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=34.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~ 72 (156)
|.++..+....+..+|+++|+++++++.|++|++.. +. + ++++.+|+.+..+. .++||+|+++.+.
T Consensus 42 G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~ 111 (215)
T 4dzr_A 42 GCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF-GA-V---VDWAAADGIEWLIERAERGRPWHAIVSNPPY 111 (215)
T ss_dssp CHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCC
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh-CC-c---eEEEEcchHhhhhhhhhccCcccEEEECCCC
Confidence 666665545566689999999999999999999883 76 6 99999998763332 2789999997554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-09 Score=82.81 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=63.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--C---------CCCccceEEEEccCCCCCCCCCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNI--K---------QNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--g---------~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~ 70 (156)
|.++..+... +..+|+++|+++++++.|++++ . + + .++ ++++.+|+.+.....++||+|+++.
T Consensus 87 G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~-~~~~l~~~~~~~~~~~---v~~~~~D~~~~l~~~~~fD~Ii~d~ 160 (281)
T 1mjf_A 87 GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-K-IDNGLLEAMLNGKHEK---AKLTIGDGFEFIKNNRGFDVIIADS 160 (281)
T ss_dssp SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-C-TTTTHHHHHHTTCCSS---EEEEESCHHHHHHHCCCEEEEEEEC
T ss_pred CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-h-hccccccccccCCCCc---EEEEECchHHHhcccCCeeEEEECC
Confidence 5555543333 5589999999999999999998 4 3 2 245 9999999854222146799999998
Q ss_pred CCC----------chHHHHHhhCCCCcEEEEEec
Q psy14971 71 ACI----------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 71 ~~~----------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
..+ .+-+.+.+.|+|||++++..+
T Consensus 161 ~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 161 TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 742 123466889999999999754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-08 Score=74.28 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=66.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-----CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-----RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-----n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.++...... +.+|+++|+++++++.|+++++. .++. + ++++.+|+........+||+|++......++
T Consensus 42 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~---~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~ 115 (235)
T 3sm3_A 42 GKISLELASK--GYSVTGIDINSEAIRLAETAARS-PGLNQKTGGK---AEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115 (235)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTC-CSCCSSSSCE---EEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHh-cCCccccCcc---eEEEEecccccCCCCCceeEEEEcchhhcCC
Confidence 5555443333 47999999999999999999987 3542 4 8999999876443457899999998776553
Q ss_pred ---------HHHHhhCCCCcEEEEEec
Q psy14971 77 ---------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---------~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 116 DPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 346789999999999743
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.6e-09 Score=85.81 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=69.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCCCc--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~~-- 74 (156)
.|.+++.+... ..+|+++|+++++++.|++|++.+ +++| ++++.+|+.+..+. ..+||+|+++.+...
T Consensus 220 ~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n-~~~~---~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 220 AGGFALHLALG--FREVVAVDSSAEALRRAEENARLN-GLGN---VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG 293 (382)
T ss_dssp TTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT-TCTT---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCS
T ss_pred cCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc-CCCC---ceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCC
Confidence 36666644333 479999999999999999999985 8888 99999998654331 468999999876521
Q ss_pred -------------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 75 -------------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 -------------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+...+.+.|+|||+|++.....
T Consensus 294 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 294 KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2235678999999999987643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=74.81 Aligned_cols=87 Identities=17% Similarity=0.090 Sum_probs=64.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.++......++ .+|+++|+++.+++.|++++.. ..+ ++++.+|+.+.....++||+|++......
T Consensus 54 G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~---~~~---i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~ 126 (215)
T 2pxx_A 54 SALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH---VPQ---LRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERD 126 (215)
T ss_dssp CSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT---CTT---CEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSC
T ss_pred cHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc---CCC---cEEEEcchhcCCCCCCcccEEEECcchhhhcccccc
Confidence 555554433444 3899999999999999999865 246 99999998764333568999998765422
Q ss_pred --------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 --------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 --------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+...+.+.|+|||++++....
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 127 PWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 223567899999999997653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.9e-09 Score=82.05 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=63.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhh--h-cCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKL--N-IKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI---- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~--~-~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~---- 73 (156)
|.++..+....+..+|+++|+++++++.|++++.. . ++.++ ++++.+|+.+..+ ....||+|+++...+
T Consensus 102 G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~---v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~ 178 (296)
T 1inl_A 102 GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPR---AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQ 178 (296)
T ss_dssp CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTT---EEEEESCHHHHGGGCSSCEEEEEEEC-------
T ss_pred CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCc---eEEEECcHHHHHhhCCCCceEEEEcCCCcccCc
Confidence 55554433333458999999999999999999854 1 22356 9999999865332 246799999987544
Q ss_pred -------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 -------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+-+.+.+.|+|||+|++..+.
T Consensus 179 ~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 179 GGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp ---CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred hhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 1224678899999999997653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.1e-08 Score=74.67 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=67.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C-CCCCcCEEEEccCCCch--
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A-EEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~-~~~~fD~I~i~~~~~~i-- 75 (156)
|.++. ++...++.++|+++|+++++++.+.++.+. . .| ++++.+|+.+.. + ..++||+|+++.+.+..
T Consensus 89 G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-~--~~---v~~~~~d~~~~~~~~~~~~~~D~V~~~~~~~~~~~ 162 (233)
T 2ipx_A 89 GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-R--TN---IIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 162 (233)
T ss_dssp SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-C--TT---EEEECSCTTCGGGGGGGCCCEEEEEECCCCTTHHH
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-c--CC---eEEEEcccCChhhhcccCCcEEEEEEcCCCccHHH
Confidence 56664 667777778999999999999988888876 2 57 999999987632 2 24689999998774432
Q ss_pred --HHHHHhhCCCCcEEEEEec
Q psy14971 76 --PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|||||++++.+.
T Consensus 163 ~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 163 IVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEc
Confidence 2357789999999999654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-08 Score=73.48 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=65.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++...... +.+|+++|+++++++.|++ . +..+ ++++.+|+.+. ...++||+|++....+++++
T Consensus 58 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~---~--~~~~---~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~ 126 (218)
T 3ou2_A 58 GYWTRHLSGL--ADRVTALDGSAEMIAEAGR---H--GLDN---VEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFE 126 (218)
T ss_dssp SHHHHHHHHH--SSEEEEEESCHHHHHHHGG---G--CCTT---EEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHhc--CCeEEEEeCCHHHHHHHHh---c--CCCC---eEEEecccccC-CCCCceeEEEEechhhcCCHHHHH
Confidence 5555433222 4799999999999999997 2 5567 99999999876 44678999999998876653
Q ss_pred ----HHHhhCCCCcEEEEEeccC
Q psy14971 78 ----EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~~~ 96 (156)
.+.+.|+|||++++.....
T Consensus 127 ~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 127 AFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEeCCC
Confidence 4578999999999987543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=76.31 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=64.4
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.. +... +.++|+++|+++++++.|+++. .+ ++++.+|+.+.. ...+||.|++......++
T Consensus 45 G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~------~~---~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~ 113 (259)
T 2p35_A 45 GNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL------PN---TNFGKADLATWK-PAQKADLLYANAVFQWVPDHLA 113 (259)
T ss_dssp THHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS------TT---SEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHHH
T ss_pred CHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC------CC---cEEEECChhhcC-ccCCcCEEEEeCchhhCCCHHH
Confidence 566654 4343 5689999999999999999872 35 899999987643 557899999998877654
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 114 ~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 114 VLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp HHHHHGGGEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCeEEEEEeC
Confidence 356789999999999764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=73.71 Aligned_cols=78 Identities=18% Similarity=0.072 Sum_probs=62.6
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH--------HHHHhhCC
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--------KEILAQLK 84 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--------~~l~~~L~ 84 (156)
++.+|+++|+++++++.|+++++.. + .+ ++++.+|+.+.....++||+|++.....+++ ..+.+.||
T Consensus 45 ~~~~v~~vD~s~~~~~~a~~~~~~~-~-~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 119 (209)
T 2p8j_A 45 DGYKTYGIEISDLQLKKAENFSREN-N-FK---LNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119 (209)
T ss_dssp TTCEEEEEECCHHHHHHHHHHHHHH-T-CC---CCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhc-C-Cc---eEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcC
Confidence 3479999999999999999999873 5 46 8999999876433357899999987766652 35678999
Q ss_pred CCcEEEEEecc
Q psy14971 85 PGGRLVFHKGL 95 (156)
Q Consensus 85 pGGrLv~~~~~ 95 (156)
|||++++....
T Consensus 120 pgG~l~~~~~~ 130 (209)
T 2p8j_A 120 PGGLACINFLT 130 (209)
T ss_dssp EEEEEEEEEEE
T ss_pred CCcEEEEEEec
Confidence 99999997653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.3e-09 Score=84.55 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=64.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--CC--CCccceEEEEccCCCCCC--CCCCcCEEEEccCCC--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNI--KQ--NRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACI-- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--g~--~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~-- 73 (156)
|.++.......+..+|+++|+++++++.|++++.. + ++ .+ ++++.+|+.+..+ ..++||+|+++...+
T Consensus 132 G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~-~~~gl~~~r---v~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~ 207 (334)
T 1xj5_A 132 GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD-VAIGYEDPR---VNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIG 207 (334)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH-HHGGGGSTT---EEEEESCHHHHHHTSCTTCEEEEEECCCCTTS
T ss_pred cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh-hccccCCCc---EEEEECCHHHHHHhccCCCccEEEECCCCccC
Confidence 55554433334568999999999999999999875 2 22 46 9999999865322 236799999987632
Q ss_pred --------chHHHHHhhCCCCcEEEEEe
Q psy14971 74 --------EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 --------~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+-+.+.+.|+|||+|++..
T Consensus 208 ~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 208 PAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp GGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 22346788999999999964
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=76.15 Aligned_cols=88 Identities=13% Similarity=-0.028 Sum_probs=68.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+++++|+ +++++.|++++.. .++.++ ++++.+|..+..+. +||+|++....+..++
T Consensus 181 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~~~~~~ 254 (332)
T 3i53_A 181 GGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLD-TGLSGR--AQVVVGSFFDPLPA--GAGGYVLSAVLHDWDDLSAV 254 (332)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTT--EEEEECCTTSCCCC--SCSEEEEESCGGGSCHHHHH
T ss_pred hHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhh-cCcCcC--eEEecCCCCCCCCC--CCcEEEEehhhccCCHHHHH
Confidence 555543333346689999999 9999999999988 476333 99999999755543 7999999988876553
Q ss_pred ----HHHhhCCCCcEEEEEecc
Q psy14971 78 ----EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|+|||+|++....
T Consensus 255 ~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 255 AILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEEeec
Confidence 467899999999997653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.6e-08 Score=74.49 Aligned_cols=84 Identities=17% Similarity=0.018 Sum_probs=65.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. +++..+ .+|+++|+++++++.|+++++. .+.. + ++++.+|..+ ++ ++||+|++.....+++
T Consensus 76 G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~-~~~~~~---~~~~~~d~~~-~~--~~fD~v~~~~~l~~~~~~~ 146 (287)
T 1kpg_A 76 GATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVAN-SENLRS---KRVLLAGWEQ-FD--EPVDRIVSIGAFEHFGHER 146 (287)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-CCCCSC---EEEEESCGGG-CC--CCCSEEEEESCGGGTCTTT
T ss_pred cHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh-cCCCCC---eEEEECChhh-CC--CCeeEEEEeCchhhcChHH
Confidence 55554 443444 5999999999999999999987 4764 5 9999999864 33 7899999998776552
Q ss_pred -----HHHHhhCCCCcEEEEEec
Q psy14971 77 -----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 147 ~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 147 YDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEe
Confidence 356789999999999764
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.2e-09 Score=82.39 Aligned_cols=90 Identities=14% Similarity=0.034 Sum_probs=64.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhh--h-cCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKL--N-IKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE--- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~--~-~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~--- 74 (156)
|.++.......+..+|+++|+++++++.|++++.. . +..++ ++++.+|+.+.++ ..++||+|+++...+.
T Consensus 107 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~r---v~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~ 183 (304)
T 2o07_A 107 GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSK---LTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPA 183 (304)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT---EEEEESCHHHHHHTCSSCEEEEEEECC------
T ss_pred hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCc---EEEEECcHHHHHhhCCCCceEEEECCCCCCCcc
Confidence 55554433334568999999999999999999865 1 12246 9999999865222 2467999999886532
Q ss_pred -------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+-+.+.+.|+|||+|++...
T Consensus 184 ~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 184 ESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp -----CHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 23467899999999999763
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=75.87 Aligned_cols=83 Identities=19% Similarity=0.063 Sum_probs=64.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+ .+|+++|+++++++.|++++.. + ++++.+|+.+. ...++||+|++....++++
T Consensus 54 G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~-----~---v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~~~~~ 122 (250)
T 2p7i_A 54 GDFTSRLQEHF--NDITCVEASEEAISHAQGRLKD-----G---ITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDDPVAL 122 (250)
T ss_dssp SHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCS-----C---EEEEESCGGGC-CCSSCEEEEEEESCGGGCSSHHHH
T ss_pred CHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhC-----C---eEEEEccHHHc-CcCCcccEEEEhhHHHhhcCHHHH
Confidence 45554333333 5899999999999999988642 5 99999998765 3457899999999887654
Q ss_pred -HHHH-hhCCCCcEEEEEecc
Q psy14971 77 -KEIL-AQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -~~l~-~~L~pGGrLv~~~~~ 95 (156)
..+. +.|||||+|++....
T Consensus 123 l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 123 LKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp HHHHHHTTEEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEcCC
Confidence 3568 899999999998743
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-08 Score=83.78 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=68.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCCC----CCCcCEEEEccCCC-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACI- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~- 73 (156)
.|.+++.+...+ ..+|+++|+++++++.|++|++.+ +++ | ++++.+|+.+.++. ..+||+|+++.+..
T Consensus 223 tG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n-~~~~~~---v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~ 297 (385)
T 2b78_A 223 TAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN-HLDMAN---HQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA 297 (385)
T ss_dssp TTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT-TCCCTT---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-
T ss_pred cCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCccc---eEEEECCHHHHHHHHHHhCCCccEEEECCCCCC
Confidence 366776554433 259999999999999999999985 876 7 99999998653321 35799999987652
Q ss_pred ----chH----------HHHHhhCCCCcEEEEEeccC
Q psy14971 74 ----EVP----------KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 ----~i~----------~~l~~~L~pGGrLv~~~~~~ 96 (156)
... ..+.+.|+|||+|++.....
T Consensus 298 ~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 298 RNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 111 23468999999999987643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.7e-08 Score=72.27 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=63.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++...... +.+|+++|+++++++.|++++. .+ ++++.+|+.+.... ++||+|++......++
T Consensus 57 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----~~---~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~ 125 (220)
T 3hnr_A 57 GNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-----KE---FSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKN 125 (220)
T ss_dssp SHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-----TT---CCEESCCSSSCCCC-SCCSEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-----Cc---eEEEeCChhhcCCC-CCeEEEEECcchhcCChHHHH
Confidence 5555433222 4799999999999999998864 35 88999998774333 7899999998887654
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 126 ~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 126 VAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp HHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEec
Confidence 346789999999999753
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=75.59 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=66.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. ++...+ .+|+++|+++++++.|+++++. .++.++ ++++.+|..+. + ++||+|++.....+++
T Consensus 102 G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~-~--~~fD~v~~~~~l~~~~~~~~ 173 (318)
T 2fk8_A 102 GTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLAS-IDTNRS--RQVLLQGWEDF-A--EPVDRIVSIEAFEHFGHENY 173 (318)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-SCCSSC--EEEEESCGGGC-C--CCCSEEEEESCGGGTCGGGH
T ss_pred hHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-cCCCCc--eEEEECChHHC-C--CCcCEEEEeChHHhcCHHHH
Confidence 55554 444443 6999999999999999999988 476433 99999998653 3 6899999998776552
Q ss_pred ----HHHHhhCCCCcEEEEEecc
Q psy14971 77 ----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|||||++++....
T Consensus 174 ~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 174 DDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEEec
Confidence 3567899999999997653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-08 Score=79.05 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=67.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
|.+++. .. ...+|+++|+++++++.|++|++.+ ++ ++ ++++.+|+.+.. ..||+|+++.+.. .+.+.
T Consensus 207 G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n-~l~~~---v~~~~~D~~~~~---~~fD~Vi~dpP~~~~~~l~~ 276 (336)
T 2yx1_A 207 GPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLN-KLEHK---IIPILSDVREVD---VKGNRVIMNLPKFAHKFIDK 276 (336)
T ss_dssp SHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHT-TCTTT---EEEEESCGGGCC---CCEEEEEECCTTTGGGGHHH
T ss_pred CHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHc-CCCCc---EEEEECChHHhc---CCCcEEEECCcHhHHHHHHH
Confidence 666665 33 3589999999999999999999985 77 46 999999987654 6899999985432 45567
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|+|||+|++....
T Consensus 277 ~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 277 ALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp HHHHEEEEEEEEEEEEE
T ss_pred HHHHcCCCCEEEEEEee
Confidence 88999999999987543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=76.73 Aligned_cols=89 Identities=4% Similarity=-0.024 Sum_probs=67.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.......|..+|+++|+ +++++.|+++++. .++.++ ++++.+|..+.. +-...||+|++....+..+
T Consensus 191 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~ 266 (363)
T 3dp7_A 191 GKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG-LSGSER--IHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEV 266 (363)
T ss_dssp CHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT-CTTGGG--EEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHH
T ss_pred CHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh-cCcccc--eEEEEccccccCCCCCCCcCEEEEechhhhCCHHHH
Confidence 566654333356789999999 9999999999987 466333 999999988642 1126799999999887554
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 267 ~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 267 ISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp HHHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEee
Confidence 246788999999998653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=76.22 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=65.5
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.. +... ..+|+++|+++.+++.|++++.. . .+ ++++.+|..+.....++||+|++.....+++
T Consensus 105 G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~--~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 176 (254)
T 1xtp_A 105 GRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-M--PV---GKFILASMETATLPPNTYDLIVIQWTAIYLTDADF 176 (254)
T ss_dssp THHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-S--SE---EEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHH
T ss_pred CHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-C--Cc---eEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHH
Confidence 555543 3332 46899999999999999999876 2 46 9999999876433456899999999877763
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 177 ~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 177 VKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEEec
Confidence 246789999999999764
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=84.27 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=69.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-C-CccceEEEEccCCCCCCC----CCCcCEEEEccCC--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-N-RKSFKNVSVKDGSKGHAE----EGPYDIIHLGAAC-- 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~-n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~-- 72 (156)
.|.+++.+...| ..+|+++|+++++++.|++|++.+ ++ + | ++++.+|+.+..+. ...||+|+++.+.
T Consensus 231 ~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~n-gl~~~~---v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~ 305 (396)
T 3c0k_A 231 TGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN-KLDLSK---AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV 305 (396)
T ss_dssp TCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT-TCCGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCSSTT
T ss_pred CCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCccc---eEEEECCHHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 366776555544 469999999999999999999985 87 5 7 99999998664331 3579999999754
Q ss_pred ----------Cch---HHHHHhhCCCCcEEEEEeccC
Q psy14971 73 ----------IEV---PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 73 ----------~~i---~~~l~~~L~pGGrLv~~~~~~ 96 (156)
..+ ...+.+.|+|||+|++.....
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 306 ENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp TCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 122 235678999999999977643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=83.77 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=68.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCC----CCCcCEEEEccCCCc-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACIE- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~~- 74 (156)
.|.+++.+...| .++|+++|+++++++.|++|++.+ +++ | ++++.+|+.+..+. ..+||+|+++.+...
T Consensus 228 ~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n-~~~~~---v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~ 302 (396)
T 2as0_A 228 TGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLN-GVEDR---MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQ 302 (396)
T ss_dssp TTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT-TCGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCS
T ss_pred CCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc-CCCcc---ceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCC
Confidence 366666544433 469999999999999999999985 776 7 99999998653321 468999999876521
Q ss_pred --------------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 75 --------------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 --------------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+...+.+.|+|||+|++.....
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 303 HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 1235678999999999987643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=74.14 Aligned_cols=84 Identities=13% Similarity=-0.065 Sum_probs=64.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++...... +.+|+++|+++++++.|+++... .+ ++++.+|+.+.....++||+|++.....+++
T Consensus 65 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~----~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 135 (242)
T 3l8d_A 65 GYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEG----PD---LSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRA 135 (242)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCB----TT---EEEEECBTTBCSSCTTCEEEEEEESCTTSSSCHHHH
T ss_pred CHHHHHHHHc--CCeEEEEECCHHHHHHHHhhccc----CC---ceEEEcchhcCCCCCCCccEEEEcChHhhccCHHHH
Confidence 5555433332 46999999999999999987532 46 9999999876433467899999998887654
Q ss_pred -HHHHhhCCCCcEEEEEec
Q psy14971 77 -KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 136 l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 136 LNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEEEc
Confidence 357889999999999763
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.8e-08 Score=75.23 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc----h
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE----V 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~----i 75 (156)
|.++..+...+ .++|+++|+++++++.|++++.. .+. .+ ++++.+|+.+... ..++||+|++....+. .
T Consensus 76 G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~ 150 (298)
T 1ri5_A 76 GGDLLKYERAG-IGEYYGVDIAEVSINDARVRARN-MKRRFK---VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTS 150 (298)
T ss_dssp TTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHT-SCCSSE---EEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSH
T ss_pred CHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh-cCCCcc---EEEEECCccccccCCCCCcCEEEECchhhhhcCCH
Confidence 44444332233 46999999999999999999987 465 35 9999999876422 3578999999887643 2
Q ss_pred H------HHHHhhCCCCcEEEEEecc
Q psy14971 76 P------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ~------~~l~~~L~pGGrLv~~~~~ 95 (156)
+ ..+.+.|+|||+|++....
T Consensus 151 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 151 ESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2 3567899999999997754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=83.57 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=65.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI------ 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~------ 73 (156)
.|.+++.+...| +.|+++|+++++++.|++|++.+ |+++ ++.++|+.+.+.. .+.||+|+++.+.-
T Consensus 225 tG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~n-g~~~----~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~ 297 (393)
T 4dmg_A 225 VGGFALRAARKG--AYALAVDKDLEALGVLDQAALRL-GLRV----DIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEE 297 (393)
T ss_dssp TTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH-TCCC----EEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGG
T ss_pred hhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHh-CCCC----cEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHH
Confidence 477777665555 45999999999999999999985 7653 5668998653321 23499999998761
Q ss_pred ---------chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ---------EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ---------~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+...+.+.|+|||+|++....
T Consensus 298 ~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 298 LPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2223557899999999976654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.7e-08 Score=73.65 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=63.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-C-CCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-E-EGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~-~~~fD~I~i~~~~~~i~~~l 79 (156)
|.++...... +.+|+++|+++.+++.|+++. .+ ++++++|+.+.++ . .++||.|++......+...+
T Consensus 60 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------~~---~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~l~~~ 128 (226)
T 3m33_A 60 GPDAARFGPQ--AARWAAYDFSPELLKLARANA------PH---ADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRL 128 (226)
T ss_dssp SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC------TT---SEEEECCSCSSCCTTCCCCEEEEEEESCCSGGGGGH
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC------CC---ceEEEcchhhccCCcCCCCEEEEEeCCCHHHHHHHH
Confidence 5666543333 479999999999999999882 35 8999999965444 2 46899999997777777889
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.|||||+|+.+.
T Consensus 129 ~~~LkpgG~l~~~~ 142 (226)
T 3m33_A 129 PELAAPDAHFLYVG 142 (226)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHHcCCCcEEEEeC
Confidence 99999999999443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.2e-08 Score=79.50 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=63.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccC---CC--c
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA---CI--E 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~---~~--~ 74 (156)
.|.++..+...+ ..+|+++|+++ +++.|+++++.+ ++ ++ ++++.+|+.+...+.++||+|++... .. .
T Consensus 75 tG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~-~~~~~---i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~ 148 (340)
T 2fyt_A 75 TGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLN-KLEDT---ITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFES 148 (340)
T ss_dssp TSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHT-TCTTT---EEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTC
T ss_pred CcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHc-CCCCc---EEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHH
Confidence 377777655554 36999999996 999999999884 77 56 99999999764333468999998762 21 1
Q ss_pred ----hHHHHHhhCCCCcEEE
Q psy14971 75 ----VPKEILAQLKPGGRLV 90 (156)
Q Consensus 75 ----i~~~l~~~L~pGGrLv 90 (156)
+...+.+.|||||+++
T Consensus 149 ~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 149 MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp HHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCcEEE
Confidence 1234568999999997
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.6e-08 Score=78.17 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=68.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
.|.++..+...++..+|+++|+++.+++.|+++++.+ +. + ++++.+|..+.. .++||.|+++.+.+.
T Consensus 207 ~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~-~~-~---~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~ 279 (343)
T 2pjd_A 207 AGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN-GV-E---GEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSL 279 (343)
T ss_dssp TSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT-TC-C---CEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHH
T ss_pred cCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh-CC-C---CEEEEccccccc--cCCeeEEEECCCcccCccCCH
Confidence 3677766555577789999999999999999999884 65 3 678999987643 468999999887653
Q ss_pred -----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|||||+|++...
T Consensus 280 ~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 280 DAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 12356789999999999764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-08 Score=81.45 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=64.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC---CC--ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA---CI--EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~---~~--~i 75 (156)
+|.|+++|...|. .+|+|||.++ +++.|+++++.+ |+.++ |+++.+|..+... ..+||+|++... .. .+
T Consensus 94 tGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n-~~~~~--i~~i~~~~~~~~l-pe~~DvivsE~~~~~l~~e~~ 167 (376)
T 4hc4_A 94 TGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFN-GLEDR--VHVLPGPVETVEL-PEQVDAIVSEWMGYGLLHESM 167 (376)
T ss_dssp TSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHT-TCTTT--EEEEESCTTTCCC-SSCEEEEECCCCBTTBTTTCS
T ss_pred ccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHc-CCCce--EEEEeeeeeeecC-CccccEEEeecccccccccch
Confidence 5889999888775 6999999985 899999999986 87655 9999999876432 367999998432 11 12
Q ss_pred -H---HHHHhhCCCCcEEEE
Q psy14971 76 -P---KEILAQLKPGGRLVF 91 (156)
Q Consensus 76 -~---~~l~~~L~pGGrLv~ 91 (156)
+ ....+.|||||+++-
T Consensus 168 l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 168 LSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp HHHHHHHHHHHEEEEEEEES
T ss_pred hhhHHHHHHhhCCCCceECC
Confidence 2 344588999999864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=82.28 Aligned_cols=89 Identities=13% Similarity=0.014 Sum_probs=64.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--C--CCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNI--K--QNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI--- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--g--~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~--- 73 (156)
|.++.......+..+|+++|+++++++.|++++.. + + -++ ++++.+|+.+..+ ..++||+|+++...+
T Consensus 120 G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~-~~~~~~~~r---v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~ 195 (314)
T 2b2c_A 120 GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG-MSCGFSHPK---LDLFCGDGFEFLKNHKNEFDVIITDSSDPVGP 195 (314)
T ss_dssp SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT-TSGGGGCTT---EEEECSCHHHHHHHCTTCEEEEEECCC-----
T ss_pred CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH-hccccCCCC---EEEEEChHHHHHHhcCCCceEEEEcCCCCCCc
Confidence 55555433334568999999999999999999875 2 2 245 9999999865322 246799999988532
Q ss_pred -------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 -------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+-+.+.+.|+|||+|++..+
T Consensus 196 ~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 196 AESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp --------HHHHHHHHEEEEEEEEEECC
T ss_pred chhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 233467889999999999764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.6e-08 Score=74.77 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=65.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHH------HHHHHHHHHhhhcCC-CCccceEEEEcc-CCC-CCC-CCCCcCEEEEcc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMK------VKSKNQNNKKLNIKQ-NRKSFKNVSVKD-GSK-GHA-EEGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~------~~~~A~~~l~~~~g~-~n~~~v~~~~gD-~~~-~~~-~~~~fD~I~i~~ 70 (156)
|.++. ++...++.++|+++|++++ +++.|+++++. .++ ++ ++++.+| ... ..+ ..++||+|++..
T Consensus 55 G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~~~~~~~fD~v~~~~ 130 (275)
T 3bkx_A 55 GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA-GPLGDR---LTVHFNTNLSDDLGPIADQHFDRVVLAH 130 (275)
T ss_dssp SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT-STTGGG---EEEECSCCTTTCCGGGTTCCCSEEEEES
T ss_pred CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh-cCCCCc---eEEEECChhhhccCCCCCCCEEEEEEcc
Confidence 66665 4555677789999999997 99999999987 366 45 9999998 221 112 347899999998
Q ss_pred CCCchH------HHHHhhCCCCcEEEEEec
Q psy14971 71 ACIEVP------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 71 ~~~~i~------~~l~~~L~pGGrLv~~~~ 94 (156)
...+++ +.+..+++|||++++...
T Consensus 131 ~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 131 SLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp CGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred chhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 876654 233455666999999653
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-07 Score=75.95 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=67.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......|..+++++|+ +++++.|++++.. .++.++ |+++.+|..+..+. .||+|++....+..+
T Consensus 214 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~l~~~--v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~d~~~~ 287 (369)
T 3gwz_A 214 GSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTG-RGLADR--CEILPGDFFETIPD--GADVYLIKHVLHDWDDDDVV 287 (369)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTT--EEEEECCTTTCCCS--SCSEEEEESCGGGSCHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhh-cCcCCc--eEEeccCCCCCCCC--CceEEEhhhhhccCCHHHHH
Confidence 555653333356789999999 9999999999988 476433 99999999865553 799999998887554
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 288 ~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 288 RILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp HHHHHHHTTCCTTCEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEEe
Confidence 346789999999999654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=77.10 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=66.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--- 77 (156)
|-+|+......|..+|+++|+++.|++.|++|++. .|.. | +++ .|..+. ...++||+|++.-..+.+.+
T Consensus 61 GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~-~g~~~~---v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~ 133 (200)
T 3fzg_A 61 NPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK-LKTTIK---YRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDV 133 (200)
T ss_dssp HHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH-SCCSSE---EEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTC
T ss_pred CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCCcc---EEE--eccccc-CCCCCcChhhHhhHHHhhhhhHH
Confidence 56676666667888999999999999999999998 4876 4 666 665543 33478999999998887743
Q ss_pred ---HHHhhCCCCcEEEEE
Q psy14971 78 ---EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~ 92 (156)
.+.+.|+|||.+|-.
T Consensus 134 al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 134 NILDFLQLFHTQNFVISF 151 (200)
T ss_dssp CHHHHHHTCEEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEe
Confidence 578999999888764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-08 Score=79.78 Aligned_cols=75 Identities=9% Similarity=-0.116 Sum_probs=60.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-hHHHHHhhCCCCcEEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-VPKEILAQLKPGGRLV 90 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-i~~~l~~~L~pGGrLv 90 (156)
.+|+++|+++++++.|++++... +.-++ ++++.+|+.+.. ++||+|+++...+. ..+.+.+.|+|||+|+
T Consensus 95 ~~v~~veid~~~i~~ar~~~~~~~~~~~~~r---v~~~~~D~~~~~---~~fD~Ii~d~~dp~~~~~~~~~~L~pgG~lv 168 (262)
T 2cmg_A 95 THIDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDI---KKYDLIFCLQEPDIHRIDGLKRMLKEDGVFI 168 (262)
T ss_dssp CEEEEECSCHHHHGGGTTTSTTHHHHHTCTT---EEEESSGGGSCC---CCEEEEEESSCCCHHHHHHHHTTEEEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhhccccCCCe---EEEEechHHHHH---hhCCEEEECCCChHHHHHHHHHhcCCCcEEE
Confidence 89999999999999999987541 22245 999999998754 68999999976543 3567889999999999
Q ss_pred EEecc
Q psy14971 91 FHKGL 95 (156)
Q Consensus 91 ~~~~~ 95 (156)
+..+.
T Consensus 169 ~~~~~ 173 (262)
T 2cmg_A 169 SVAKH 173 (262)
T ss_dssp EEEEC
T ss_pred EEcCC
Confidence 97653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=73.96 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=64.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+. .+|+++|+++++++.|++++.. .+ ++++.+|..+......+||+|++......++
T Consensus 55 G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~----~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 126 (243)
T 3bkw_A 55 GWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD----TG---ITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARL 126 (243)
T ss_dssp CHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS----SS---EEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHH
T ss_pred CHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc----CC---ceEEEcChhhccCCCCCceEEEEeccccccchHHHH
Confidence 555544333332 4999999999999999988754 36 9999999876433357899999998776543
Q ss_pred -HHHHhhCCCCcEEEEEec
Q psy14971 77 -KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 127 l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 127 FRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhcCcCcEEEEEeC
Confidence 456889999999999764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-08 Score=77.67 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=64.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC---CCccceEEEEccCCCCCCCCCCcCEEEEccC-CCchH-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ---NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA-CIEVP- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~---~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~-~~~i~- 76 (156)
|.++...... +.+|+++|+++++++.|++++.. .+. .+ ++++.+|+.+. +..++||.|++... ...++
T Consensus 94 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~---v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~~~ 166 (299)
T 3g2m_A 94 GRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAE-APADVRDR---CTLVQGDMSAF-ALDKRFGTVVISSGSINELDE 166 (299)
T ss_dssp TTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHT-SCHHHHTT---EEEEECBTTBC-CCSCCEEEEEECHHHHTTSCH
T ss_pred CHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhh-cccccccc---eEEEeCchhcC-CcCCCcCEEEECCcccccCCH
Confidence 4445433222 47899999999999999999987 353 46 99999999873 33678999997533 32222
Q ss_pred -------HHHHhhCCCCcEEEEEecc
Q psy14971 77 -------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -------~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|||||+|++.+..
T Consensus 167 ~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 167 ADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 4567899999999997753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=88.79 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=69.6
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCC-CCCCcCEEEEccCCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI---- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~---- 73 (156)
.|.+++.+...| ..+|+++|+++.+++.|++|++.+ |++ + ++++++|+.+.++ ...+||+|+++.+.-
T Consensus 550 tG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~n-gl~~~~---v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~ 624 (703)
T 3v97_A 550 TGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLN-GLTGRA---HRLIQADCLAWLREANEQFDLIFIDPPTFSNSK 624 (703)
T ss_dssp TCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT-TCCSTT---EEEEESCHHHHHHHCCCCEEEEEECCCSBC---
T ss_pred hhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc-CCCccc---eEEEecCHHHHHHhcCCCccEEEECCccccCCc
Confidence 477777665544 368999999999999999999985 775 6 9999999876332 246899999988641
Q ss_pred ------c-------hHHHHHhhCCCCcEEEEEecc
Q psy14971 74 ------E-------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ------~-------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
. +...+.+.|+|||+|++....
T Consensus 625 ~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 625 RMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ----CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1 123567899999999987765
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7.1e-08 Score=78.33 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=63.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
.|.++..+...+ ..+|+++|++ ++++.|+++++.. ++.++ ++++.+|+.+.....++||+|++..... ..
T Consensus 77 ~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~ 151 (349)
T 3q7e_A 77 TGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKAN-KLDHV--VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESM 151 (349)
T ss_dssp TSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHHT-TCTTT--EEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCC
T ss_pred chHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHHc-CCCCc--EEEEECcHHHccCCCCceEEEEEccccccccCchh
Confidence 377776554443 4699999999 5999999999884 77655 9999999987533357899999965311 12
Q ss_pred H----HHHHhhCCCCcEEEE
Q psy14971 76 P----KEILAQLKPGGRLVF 91 (156)
Q Consensus 76 ~----~~l~~~L~pGGrLv~ 91 (156)
+ ..+.+.|||||+++.
T Consensus 152 ~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 152 LNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp HHHHHHHHHHHEEEEEEEES
T ss_pred HHHHHHHHHHhCCCCCEEcc
Confidence 2 345688999999974
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-08 Score=73.29 Aligned_cols=83 Identities=7% Similarity=-0.049 Sum_probs=63.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++...... +.+|+++|+++++++.|+++. .+ ++++.+|+.+.....++||+|++......++
T Consensus 53 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~------~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 121 (203)
T 3h2b_A 53 GRWTGHLASL--GHQIEGLEPATRLVELARQTH------PS---VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP 121 (203)
T ss_dssp CHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC------TT---SEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred CHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------CC---CeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence 5555433332 369999999999999999873 25 8899999876333457899999998876653
Q ss_pred ---HHHHhhCCCCcEEEEEecc
Q psy14971 77 ---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|+|||++++....
T Consensus 122 ~~l~~~~~~L~pgG~l~i~~~~ 143 (203)
T 3h2b_A 122 DALVALRMAVEDGGGLLMSFFS 143 (203)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCcEEEEEEcc
Confidence 3567899999999998754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.3e-08 Score=73.17 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=64.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCch---H-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEV---P- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i---~- 76 (156)
|.++...... ..+|+++|+++++++.|++++.. .+. + ++++.+|..+.... .+||+|++.. ..+++ +
T Consensus 49 G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~-~~~-~---~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~ 120 (246)
T 1y8c_A 49 GNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRS-QGL-K---PRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDD 120 (246)
T ss_dssp STTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHH-TTC-C---CEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHH
T ss_pred CHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhh-cCC-C---eEEEecccccCCcc-CCceEEEEcCccccccCCHHH
Confidence 4444433222 36899999999999999999987 365 6 99999998764333 7899999987 76655 2
Q ss_pred -----HHHHhhCCCCcEEEEEec
Q psy14971 77 -----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++.+.
T Consensus 121 ~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 121 LKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEec
Confidence 246789999999998654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-08 Score=78.35 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=67.7
Q ss_pred hHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CC---CCCcC-----EEEEccC
Q psy14971 3 DLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AE---EGPYD-----IIHLGAA 71 (156)
Q Consensus 3 ~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~---~~~fD-----~I~i~~~ 71 (156)
.+.-+++.+.|.++|+++|.|+.|++.||+++... +..+ ++++.+|..+.. .. .+.|| .|++++.
T Consensus 94 ~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~-~~~~---~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~av 169 (277)
T 3giw_A 94 NLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST-PEGR---TAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAI 169 (277)
T ss_dssp CHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC-SSSE---EEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESC
T ss_pred HHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC-CCCc---EEEEEecccChhhhhcccccccccCcCCcchHHhhhh
Confidence 45556777778899999999999999999999762 4346 999999987631 10 23355 6888888
Q ss_pred CCchHH---------HHHhhCCCCcEEEEEeccC
Q psy14971 72 CIEVPK---------EILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 72 ~~~i~~---------~l~~~L~pGGrLv~~~~~~ 96 (156)
++.+++ .+.+.|+|||+|++.....
T Consensus 170 LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 170 VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred HhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 876653 4567899999999986543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=77.00 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=61.7
Q ss_pred CchHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhhc---CCCCc-----------------------cceE-----
Q psy14971 1 MGDLNVIVGIK--GERALVLILNHYMKVKSKNQNNKKLNI---KQNRK-----------------------SFKN----- 47 (156)
Q Consensus 1 ~G~la~la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~~---g~~n~-----------------------~~v~----- 47 (156)
.|.+++.+... .+..+|+++|+++++++.|++|+.. . ++.++ ..++
T Consensus 62 sG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 140 (250)
T 1o9g_A 62 SGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL-LSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTA 140 (250)
T ss_dssp TSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH-hhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccc
Confidence 36666544332 3457999999999999999998865 3 22110 0044
Q ss_pred --------EEEccCCCCCC-----CCCCcCEEEEccCCC---------------chHHHHHhhCCCCcEEEE
Q psy14971 48 --------VSVKDGSKGHA-----EEGPYDIIHLGAACI---------------EVPKEILAQLKPGGRLVF 91 (156)
Q Consensus 48 --------~~~gD~~~~~~-----~~~~fD~I~i~~~~~---------------~i~~~l~~~L~pGGrLv~ 91 (156)
++.+|..+..+ ...+||+|+++.+.. .+...+.+.|+|||+|++
T Consensus 141 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 141 EGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp TTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 99999877542 334799999975421 223456789999999998
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=77.78 Aligned_cols=67 Identities=12% Similarity=-0.052 Sum_probs=49.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC----CCCC--CCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK----GHAE--EGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~----~~~~--~~~fD~I~i~~~~ 72 (156)
|.+++ ++... +.++|+++|+++++++.|++|++.+ ++.++ ++++.+|+.+ ..+. ..+||.|+++.+.
T Consensus 77 G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~ 150 (254)
T 2h00_A 77 SCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQN-NLSDL--IKVVKVPQKTLLMDALKEESEIIYDFCMCNPPF 150 (254)
T ss_dssp TTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHT-TCTTT--EEEEECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred hHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHc-CCCcc--EEEEEcchhhhhhhhhhcccCCcccEEEECCCC
Confidence 55554 34333 3489999999999999999999984 77544 9999999765 2222 2579999998543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=79.86 Aligned_cols=89 Identities=22% Similarity=0.132 Sum_probs=64.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC----CCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIK----QNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE-- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g----~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~-- 74 (156)
|.++..+....+..+|+++|+++++++.|++++.. ++ .++ ++++.+|+.+..+ ..+.||+|+++...+.
T Consensus 90 G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~-~~~~~~~~~---v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~ 165 (283)
T 2i7c_A 90 GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN-ISCGYEDKR---VNVFIEDASKFLENVTNTYDVIIVDSSDPIGP 165 (283)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT-TSGGGGSTT---EEEEESCHHHHHHHCCSCEEEEEEECCCTTTG
T ss_pred CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH-hccccCCCc---EEEEECChHHHHHhCCCCceEEEEcCCCCCCc
Confidence 44444333334568999999999999999999875 22 246 9999999865322 1467999999875432
Q ss_pred --------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 --------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+-+.+.+.|+|||+|++...
T Consensus 166 ~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 166 AETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp GGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred chhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 22456789999999999754
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.2e-08 Score=76.24 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=56.5
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----HHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP-----KEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~-----~~l~~~L~pGGr 88 (156)
..+|+++|++++|++.|++ ..| ++++++|+.+.....++||.|++..+.+.++ ..+.+.|||||+
T Consensus 61 ~~~v~gvD~s~~ml~~a~~-------~~~---v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~ 130 (257)
T 4hg2_A 61 FERVHAVDPGEAQIRQALR-------HPR---VTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAV 130 (257)
T ss_dssp CSEEEEEESCHHHHHTCCC-------CTT---EEEEECCTTCCCCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEE
T ss_pred CCEEEEEeCcHHhhhhhhh-------cCC---ceeehhhhhhhcccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCE
Confidence 4799999999999987652 146 9999999976544568899999998887543 357889999999
Q ss_pred EEEEe
Q psy14971 89 LVFHK 93 (156)
Q Consensus 89 Lv~~~ 93 (156)
|++..
T Consensus 131 l~~~~ 135 (257)
T 4hg2_A 131 FAAVT 135 (257)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98864
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7e-08 Score=80.74 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=62.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHh-------hhcCC--CCccceEEEEccCCCCCCCC--CCcCEEEEc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKK-------LNIKQ--NRKSFKNVSVKDGSKGHAEE--GPYDIIHLG 69 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~-------~~~g~--~n~~~v~~~~gD~~~~~~~~--~~fD~I~i~ 69 (156)
.|.+++.+....+..+|+|||+++++++.|+++.+ . .|+ .+ |+|++||+.+..... ..||+||++
T Consensus 184 tG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~-~Gl~~~r---Vefi~GD~~~lp~~d~~~~aDVVf~N 259 (438)
T 3uwp_A 184 VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKW-YGKKHAE---YTLERGDFLSEEWRERIANTSVIFVN 259 (438)
T ss_dssp TSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-HTBCCCE---EEEEECCTTSHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHH-hCCCCCC---eEEEECcccCCccccccCCccEEEEc
Confidence 36677654433334579999999999999998753 3 354 46 999999987632111 469999998
Q ss_pred cCCCc--hH---HHHHhhCCCCcEEEEEe
Q psy14971 70 AACIE--VP---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 70 ~~~~~--i~---~~l~~~L~pGGrLv~~~ 93 (156)
..+.. .. ..+.+.|||||+||+..
T Consensus 260 n~~F~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 260 NFAFGPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp CTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred ccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence 76421 11 24678999999999863
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=83.89 Aligned_cols=89 Identities=9% Similarity=-0.045 Sum_probs=68.7
Q ss_pred chHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhhh-----cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNVIVGIKG-ERALVLILNHYMKVKSKNQNNKKLN-----IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~la~l~g-~~g~V~avD~~~~~~~~A~~~l~~~-----~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i 75 (156)
|.++......+ +..+|+++|+++++++.|+++++.. .+..+ ++++.+|+.+.....++||+|++.....++
T Consensus 733 G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~n---VefiqGDa~dLp~~d~sFDlVV~~eVLeHL 809 (950)
T 3htx_A 733 GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKS---ATLYDGSILEFDSRLHDVDIGTCLEVIEHM 809 (950)
T ss_dssp SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSE---EEEEESCTTSCCTTSCSCCEEEEESCGGGS
T ss_pred CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCc---eEEEECchHhCCcccCCeeEEEEeCchhhC
Confidence 66665444443 5579999999999999999987641 14556 999999998765556889999999998877
Q ss_pred HH--------HHHhhCCCCcEEEEEec
Q psy14971 76 PK--------EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~--------~l~~~L~pGGrLv~~~~ 94 (156)
++ .+.+.|||| ++++...
T Consensus 810 ~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 810 EEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp CHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred ChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 63 457899999 7777654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=76.26 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=67.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.......+..+++++|+ +++++.|++++.. .++. + ++++.+|..+..+. .||+|++....++.+
T Consensus 194 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~--~~D~v~~~~vl~~~~~~~~ 266 (374)
T 1qzz_A 194 GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD-AGLADR---VTVAEGDFFKPLPV--TADVVLLSFVLLNWSDEDA 266 (374)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTT---EEEEECCTTSCCSC--CEEEEEEESCGGGSCHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHh-cCCCCc---eEEEeCCCCCcCCC--CCCEEEEeccccCCCHHHH
Confidence 566654434456789999999 9999999999988 4765 5 99999998764443 499999998876554
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 267 ~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 267 LTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEec
Confidence 346789999999998654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-08 Score=77.97 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=65.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch---HH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---PK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~~ 77 (156)
.|.+++.+...++ +|+++|+++.+++.|++|++.+ ++ + ++++.+|..+..+ .++||.|+++...+.+ .+
T Consensus 131 ~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~-~~-~---v~~~~~d~~~~~~-~~~fD~Vv~n~~~~~~~~~l~ 202 (254)
T 2nxc_A 131 SGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN-GV-R---PRFLEGSLEAALP-FGPFDLLVANLYAELHAALAP 202 (254)
T ss_dssp TSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT-TC-C---CEEEESCHHHHGG-GCCEEEEEEECCHHHHHHHHH
T ss_pred CcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc-CC-c---EEEEECChhhcCc-CCCCCEEEECCcHHHHHHHHH
Confidence 3777776666664 9999999999999999999884 64 3 7899999765433 4689999998654433 34
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
.+.+.|+|||++++..
T Consensus 203 ~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 203 RYREALVPGGRALLTG 218 (254)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHHcCCCCEEEEEe
Confidence 6788999999999953
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=73.05 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=62.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.++. ++... ++.+|+++|+++++++.|+++. .+ +.++.+|+.+.....++||.|++.... .....+.
T Consensus 97 G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~------~~---~~~~~~d~~~~~~~~~~fD~v~~~~~~-~~l~~~~ 165 (269)
T 1p91_A 97 GYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY------PQ---VTFCVASSHRLPFSDTSMDAIIRIYAP-CKAEELA 165 (269)
T ss_dssp STTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC------TT---SEEEECCTTSCSBCTTCEEEEEEESCC-CCHHHHH
T ss_pred CHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC------CC---cEEEEcchhhCCCCCCceeEEEEeCCh-hhHHHHH
Confidence 55554 34443 4579999999999999998764 24 789999987533345689999987654 4556889
Q ss_pred hhCCCCcEEEEEecc
Q psy14971 81 AQLKPGGRLVFHKGL 95 (156)
Q Consensus 81 ~~L~pGGrLv~~~~~ 95 (156)
+.|||||+|++....
T Consensus 166 ~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 166 RVVKPGGWVITATPG 180 (269)
T ss_dssp HHEEEEEEEEEEEEC
T ss_pred HhcCCCcEEEEEEcC
Confidence 999999999998653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=76.68 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=63.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
.|.++..+...+ ..+|+++|++ ++++.|+++++.+ ++.++ ++++.+|+.+......+||+|++..... ..
T Consensus 49 tG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~-~~~~~--i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~ 123 (328)
T 1g6q_1 49 TGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELN-GFSDK--ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESM 123 (328)
T ss_dssp TSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHT-TCTTT--EEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCC
T ss_pred cHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHc-CCCCC--EEEEECchhhccCCCCcccEEEEeCchhhcccHHH
Confidence 377787665544 3699999999 6999999999884 77543 9999999876433346899999874321 12
Q ss_pred H----HHHHhhCCCCcEEE
Q psy14971 76 P----KEILAQLKPGGRLV 90 (156)
Q Consensus 76 ~----~~l~~~L~pGGrLv 90 (156)
+ ..+.+.|||||+++
T Consensus 124 ~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 124 MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp HHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeEEE
Confidence 2 34458999999997
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-08 Score=81.78 Aligned_cols=89 Identities=16% Similarity=0.079 Sum_probs=67.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc---------------CCCCccceEEEEccCCCCCCC-CCCcC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNI---------------KQNRKSFKNVSVKDGSKGHAE-EGPYD 64 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~---------------g~~n~~~v~~~~gD~~~~~~~-~~~fD 64 (156)
.|.+++.+....+..+|+++|+++++++.|++|++. . ++++ ++++++|+.+.... ...||
T Consensus 58 tG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~-n~~~~~~~~~~~~~~~gl~~---i~v~~~Da~~~~~~~~~~fD 133 (378)
T 2dul_A 58 TGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML-NFDGELRESKGRAILKGEKT---IVINHDDANRLMAERHRYFH 133 (378)
T ss_dssp TSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH-HCCSCCEECSSEEEEESSSE---EEEEESCHHHHHHHSTTCEE
T ss_pred hhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-hcccccccccccccccCCCc---eEEEcCcHHHHHHhccCCCC
Confidence 477887654433346899999999999999999998 5 6767 99999998653221 35799
Q ss_pred EEEEccCCC--chHHHHHhhCCCCcEEEEEe
Q psy14971 65 IIHLGAACI--EVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 65 ~I~i~~~~~--~i~~~l~~~L~pGGrLv~~~ 93 (156)
+|+++.... .+-+...+.|++||+|++..
T Consensus 134 ~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 134 FIDLDPFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp EEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 999987543 44567788999999887754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=74.17 Aligned_cols=82 Identities=26% Similarity=0.258 Sum_probs=62.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..... +.++|+++|+++++++.|++++ .+ ++++.+|+.. ++..++||+|++......++
T Consensus 69 G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~---~~~~~~d~~~-~~~~~~fD~v~~~~~l~~~~d~~~~ 136 (279)
T 3ccf_A 69 GQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY------PH---LHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAA 136 (279)
T ss_dssp SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC------TT---SCEEECCTTT-CCCSSCEEEEEEESCGGGCSCHHHH
T ss_pred CHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC------CC---CEEEECChhh-CCcCCCcCEEEEcchhhhCcCHHHH
Confidence 555543322 5689999999999999998765 35 7899999876 33357899999998876543
Q ss_pred -HHHHhhCCCCcEEEEEecc
Q psy14971 77 -KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|||||+|++....
T Consensus 137 l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 137 IASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp HHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHhcCCCcEEEEEecC
Confidence 4578899999999997653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-08 Score=79.41 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=65.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-cC---CCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-IK---QNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE-- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-~g---~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~-- 74 (156)
|.++.......+..+|+++|+++++++.|++++... -+ .++ ++++.+|+.+..+ ..++||+|+++...+.
T Consensus 89 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~---v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~ 165 (314)
T 1uir_A 89 GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR---AVLVIDDARAYLERTEERYDVVIIDLTDPVGE 165 (314)
T ss_dssp SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTT---EEEEESCHHHHHHHCCCCEEEEEEECCCCBST
T ss_pred CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCc---eEEEEchHHHHHHhcCCCccEEEECCCCcccc
Confidence 444443333334679999999999999999998641 02 246 9999999865322 2467999999986644
Q ss_pred -h----------HHHHHhhCCCCcEEEEEec
Q psy14971 75 -V----------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -i----------~~~l~~~L~pGGrLv~~~~ 94 (156)
- -+.+.+.|+|||+|++..+
T Consensus 166 ~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 166 DNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp TCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 1 2456889999999999764
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-08 Score=78.14 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=63.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCch-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEV- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i- 75 (156)
|.++..+....+..+|+++|+++++++.|++++... +...+ ++++.+|+.+... ..+.||+|+++...+..
T Consensus 107 G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~---v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~ 183 (304)
T 3bwc_A 107 GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPR---ATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGP 183 (304)
T ss_dssp SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT---EEEEESCHHHHHHSSCTTCEEEEEEECC-----
T ss_pred CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCc---EEEEECcHHHHHHhccCCceeEEEECCCCcccc
Confidence 455543333344679999999999999999998431 12346 9999999865332 24689999998765432
Q ss_pred ---------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ---------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ---------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-..+.+.|||||+|++....
T Consensus 184 ~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 184 ASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp ----CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred chhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 24567899999999997643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=71.30 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=58.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCch---------HHHHHhhCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEV---------PKEILAQLK 84 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i---------~~~l~~~L~ 84 (156)
.+|+++|+++++++.|++++.. .+ .+ ++++.+|+.+... ..+||+|++.. ....+ ...+.+.|+
T Consensus 55 ~~v~~vD~s~~~~~~a~~~~~~-~~-~~---~~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 128 (243)
T 3d2l_A 55 YEVTGVDLSEEMLEIAQEKAME-TN-RH---VDFWVQDMRELEL-PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128 (243)
T ss_dssp SEEEEEESCHHHHHHHHHHHHH-TT-CC---CEEEECCGGGCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEE
T ss_pred CeEEEEECCHHHHHHHHHhhhh-cC-Cc---eEEEEcChhhcCC-CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999999987 35 46 9999999876332 37899999976 44433 134678999
Q ss_pred CCcEEEEEec
Q psy14971 85 PGGRLVFHKG 94 (156)
Q Consensus 85 pGGrLv~~~~ 94 (156)
|||++++.+.
T Consensus 129 pgG~l~~~~~ 138 (243)
T 3d2l_A 129 DGGKLLFDVH 138 (243)
T ss_dssp EEEEEEEEEE
T ss_pred CCeEEEEEcC
Confidence 9999998653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=70.61 Aligned_cols=71 Identities=15% Similarity=0.035 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCcEE
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGGRL 89 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGGrL 89 (156)
+|+++|+++++++.|++++ .+ ++++.+|+.+.....++||+|++....++++ ..+.+.|||||++
T Consensus 58 ~v~~vD~s~~~~~~a~~~~------~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l 128 (211)
T 2gs9_A 58 QKVGVEPSEAMLAVGRRRA------PE---ATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGAL 128 (211)
T ss_dssp EEEEECCCHHHHHHHHHHC------TT---SEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHhC------CC---cEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEE
Confidence 9999999999999999875 24 8899999876433456899999998877654 3567899999999
Q ss_pred EEEecc
Q psy14971 90 VFHKGL 95 (156)
Q Consensus 90 v~~~~~ 95 (156)
++....
T Consensus 129 ~i~~~~ 134 (211)
T 2gs9_A 129 VVGVLE 134 (211)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 997654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-08 Score=77.69 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=62.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCC---CCCCCcCEEEEc-cCCCc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLG-AACIE 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~-~~~~~ 74 (156)
|.++......+ .+|+++|+++++++.|++++... .+..+ +.+..+|..+.. ...++||+|++. ....+
T Consensus 69 G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~ 143 (293)
T 3thr_A 69 GVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDK---WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAH 143 (293)
T ss_dssp SHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHT---CEEEECCGGGHHHHSCCTTCEEEEEECTTCGGG
T ss_pred CHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccce---eeEeecChhhCccccccCCCeEEEEEcChHHhh
Confidence 55555433333 59999999999999999987431 01235 889999976532 245789999997 45543
Q ss_pred hH-------------HHHHhhCCCCcEEEEEec
Q psy14971 75 VP-------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~-------------~~l~~~L~pGGrLv~~~~ 94 (156)
++ ..+.+.|||||+|++...
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 144 LPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp SCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 32 356789999999998753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=74.96 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=66.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......|..+++++|+ +++++.|++++... ++.++ ++++.+|..+..+ ..||+|++....++.+
T Consensus 179 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~--~~~D~v~~~~vl~~~~~~~~~ 252 (334)
T 2ip2_A 179 GELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-LAGER--VSLVGGDMLQEVP--SNGDIYLLSRIIGDLDEAASL 252 (334)
T ss_dssp CHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-HHTTS--EEEEESCTTTCCC--SSCSEEEEESCGGGCCHHHHH
T ss_pred hHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-CCCCc--EEEecCCCCCCCC--CCCCEEEEchhccCCCHHHHH
Confidence 555544333346689999999 99999999998873 54332 9999999877443 5699999998876443
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 253 ~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 253 RLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp HHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEEEe
Confidence 356789999999999754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-08 Score=73.18 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=62.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-----CCCcCEEEEccCCCchH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-----EGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-----~~~fD~I~i~~~~~~i~ 76 (156)
|.++......++ +|+++|+++.+++.|++++.. .+ ++++.+|+.+.... ..+||+|++....+.++
T Consensus 68 G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~----~~---~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~ 138 (245)
T 3ggd_A 68 GTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTA----AN---ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIP 138 (245)
T ss_dssp SHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCC----TT---EEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSC
T ss_pred CHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcc----cC---ceEEECcccccccccccccccCccEEEEcchhhcCC
Confidence 566654333343 899999999999999998743 36 99999998763211 13599999998877655
Q ss_pred --------HHHHhhCCCCcEEEEEec
Q psy14971 77 --------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --------~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 139 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 139 VEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 356789999999887643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=71.37 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=61.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHH----HHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKN----QNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC---- 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A----~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~---- 72 (156)
.|.++.......|.++|+++|++++|++.+ +++... .+.+| ++++++|+.+....... |.|++..+.
T Consensus 38 ~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~-~~~~~---v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~ 112 (218)
T 3mq2_A 38 DGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK-GGLPN---LLYLWATAERLPPLSGV-GELHVLMPWGSLL 112 (218)
T ss_dssp TCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG-TCCTT---EEEEECCSTTCCSCCCE-EEEEEESCCHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh-cCCCc---eEEEecchhhCCCCCCC-CEEEEEccchhhh
Confidence 367776544456779999999999988753 334444 36678 99999999873333344 777754432
Q ss_pred -------CchHHHHHhhCCCCcEEEEEec
Q psy14971 73 -------IEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 -------~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
..+...+.+.|||||++++...
T Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 113 RGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp HHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 2233567899999999999764
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-08 Score=79.59 Aligned_cols=90 Identities=21% Similarity=0.121 Sum_probs=64.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI---- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~---- 73 (156)
|.++..+....+..+|+++|+++++++.|++++... +..++ ++++.+|+.+..+ ..++||+|+++...+
T Consensus 128 G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~---v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~ 204 (321)
T 2pt6_A 128 GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKR---VNVFIEDASKFLENVTNTYDVIIVDSSDPIGPA 204 (321)
T ss_dssp CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTT---EEEEESCHHHHHHHCCSCEEEEEEECCCSSSGG
T ss_pred cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCc---EEEEEccHHHHHhhcCCCceEEEECCcCCCCcc
Confidence 555544333334689999999999999999998751 11246 9999999865322 236799999987432
Q ss_pred ------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 ------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+-+.+.+.|+|||++++...
T Consensus 205 ~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 205 ETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp GGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 222466789999999999764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-07 Score=73.00 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=66.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+|+++|+ +++++.|+++++. .++.++ ++++.+|..+... ..+|+|++....+..++
T Consensus 202 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~--~~~D~v~~~~vlh~~~d~~~~ 275 (359)
T 1x19_A 202 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-KGVADR--MRGIAVDIYKESY--PEADAVLFCRILYSANEQLST 275 (359)
T ss_dssp CHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH-TTCTTT--EEEEECCTTTSCC--CCCSEEEEESCGGGSCHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHh-cCCCCC--EEEEeCccccCCC--CCCCEEEEechhccCCHHHHH
Confidence 566654433456789999999 9999999999988 476544 9999999876422 23599999988776542
Q ss_pred ----HHHhhCCCCcEEEEEec
Q psy14971 78 ----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||+|++...
T Consensus 276 ~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 276 IMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEec
Confidence 46789999999988653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=70.77 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=62.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-c------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-E------ 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~------ 74 (156)
|.++...... +.+|+++|+++++++.|++++.. .+. + ++++.+|..+.. ...+||+|++..+.. .
T Consensus 53 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~-~---v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~ 124 (252)
T 1wzn_A 53 GIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE-RNL-K---IEFLQGDVLEIA-FKNEFDAVTMFFSTIMYFDEEDL 124 (252)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTC-C---CEEEESCGGGCC-CCSCEEEEEECSSGGGGSCHHHH
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh-cCC-c---eEEEECChhhcc-cCCCccEEEEcCCchhcCCHHHH
Confidence 5555433333 46999999999999999999987 364 6 999999987633 336799999864322 1
Q ss_pred --hHHHHHhhCCCCcEEEEEec
Q psy14971 75 --VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.|+|||++++.+.
T Consensus 125 ~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 125 RKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEecc
Confidence 12356789999999998654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=77.90 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=67.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI------ 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~------ 73 (156)
.|.+++.+...++.++|+++|+++++++.|++|++.+ |+ ++ ++++++|+.+......+||+|+++.+..
T Consensus 228 sG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-gl~~~---i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~ 303 (373)
T 3tm4_A 228 SGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-GVLDK---IKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKK 303 (373)
T ss_dssp TCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT-TCGGG---CEEEECCGGGGGGTCSCEEEEEEECCCC------
T ss_pred CcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCc---eEEEECChhhCCcccCCcCEEEECCCCCcccCcc
Confidence 4777777767776679999999999999999999984 87 45 9999999987443447899999987632
Q ss_pred -ch-------HHHHHhhCCCCcEEEEEecc
Q psy14971 74 -EV-------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 -~i-------~~~l~~~L~pGGrLv~~~~~ 95 (156)
.+ -+.+.+.| ||++++....
T Consensus 304 ~~~~~ly~~~~~~l~r~l--~g~~~~i~~~ 331 (373)
T 3tm4_A 304 SMIPDLYMKFFNELAKVL--EKRGVFITTE 331 (373)
T ss_dssp CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred hhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 11 12445556 7777776653
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.6e-07 Score=72.34 Aligned_cols=70 Identities=10% Similarity=0.011 Sum_probs=56.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCchH---------HHHHhhC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEVP---------KEILAQL 83 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i~---------~~l~~~L 83 (156)
..+|+++|+++++++.|++++. + ++++.+|+.+... .++||+|++.. ....++ ..+.+.|
T Consensus 72 ~~~v~gvD~s~~~~~~a~~~~~------~---~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L 141 (263)
T 3pfg_A 72 FGTVEGLELSADMLAIARRRNP------D---AVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHV 141 (263)
T ss_dssp SSEEEEEESCHHHHHHHHHHCT------T---SEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTE
T ss_pred CCeEEEEECCHHHHHHHHhhCC------C---CEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhc
Confidence 4699999999999999998743 4 8899999876433 57899999987 665552 3567899
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
||||+|++..
T Consensus 142 ~pgG~l~i~~ 151 (263)
T 3pfg_A 142 LPDGVVVVEP 151 (263)
T ss_dssp EEEEEEEECC
T ss_pred CCCcEEEEEe
Confidence 9999999953
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=77.33 Aligned_cols=87 Identities=16% Similarity=0.037 Sum_probs=64.8
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
.|.+++.+...|. .+|+++|++ ++++.|+++++.+ ++.++ ++++.+|+.+.... ++||+|+++.... ..
T Consensus 74 tG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~ 147 (376)
T 3r0q_C 74 SGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKAN-NLDHI--VEVIEGSVEDISLP-EKVDVIISEWMGYFLLRESM 147 (376)
T ss_dssp TTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHT-TCTTT--EEEEESCGGGCCCS-SCEEEEEECCCBTTBTTTCT
T ss_pred cCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHc-CCCCe--EEEEECchhhcCcC-CcceEEEEcChhhcccchHH
Confidence 4777776555553 599999999 9999999999984 77554 99999998764333 7899999965322 11
Q ss_pred H----HHHHhhCCCCcEEEEEe
Q psy14971 76 P----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~----~~l~~~L~pGGrLv~~~ 93 (156)
+ ..+.+.|||||+|++..
T Consensus 148 ~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 148 FDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp HHHHHHHHHHHEEEEEEEESSE
T ss_pred HHHHHHHHHhhCCCCeEEEEec
Confidence 2 34568899999997643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-08 Score=74.08 Aligned_cols=87 Identities=7% Similarity=-0.035 Sum_probs=62.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCC-HHHHHHH---HHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc-
Q psy14971 2 GDLNVIVGIKGERALVLILNHY-MKVKSKN---QNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~-~~~~~~A---~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~- 74 (156)
|.++.......+.++|+++|++ +.|++.| +++.+. .++.| ++++.+|+... +. ...+|.|++..+.+.
T Consensus 36 G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~-~~~~~---v~~~~~d~~~l-~~~~~d~v~~i~~~~~~~~~ 110 (225)
T 3p2e_A 36 GRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK-GGLSN---VVFVIAAAESL-PFELKNIADSISILFPWGTL 110 (225)
T ss_dssp SHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG-TCCSS---EEEECCBTTBC-CGGGTTCEEEEEEESCCHHH
T ss_pred cHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH-cCCCC---eEEEEcCHHHh-hhhccCeEEEEEEeCCCcHH
Confidence 5566544334677899999999 7777776 888877 48888 99999998764 32 255777777654322
Q ss_pred ----------hHHHHHhhCCCCcEEEEEe
Q psy14971 75 ----------VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 ----------i~~~l~~~L~pGGrLv~~~ 93 (156)
+...+.+.|||||++++..
T Consensus 111 ~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 111 LEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp HHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 2346788999999999943
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.9e-07 Score=74.26 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=67.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++.......+..+++++|+ +++++.|+++++. .++. + ++++.+|..+..+. .||+|++....++++
T Consensus 195 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~---v~~~~~d~~~~~~~--~~D~v~~~~vl~~~~~~~~ 267 (360)
T 1tw3_A 195 GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD-EGLSDR---VDVVEGDFFEPLPR--KADAIILSFVLLNWPDHDA 267 (360)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH-TTCTTT---EEEEECCTTSCCSS--CEEEEEEESCGGGSCHHHH
T ss_pred cHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHh-cCCCCc---eEEEeCCCCCCCCC--CccEEEEcccccCCCHHHH
Confidence 666654434456789999999 9999999999988 4765 5 99999998765543 499999988876544
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 268 ~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 268 VRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEEE
Confidence 346789999999998653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-07 Score=73.73 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=66.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......|..+|+++|++ ++++.|++++... ++.++ ++++.+|..+... ...||+|++....+..+
T Consensus 177 G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-~~~~~--v~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~ 251 (335)
T 2r3s_A 177 GLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-GVASR--YHTIAGSAFEVDY-GNDYDLVLLPNFLHHFDVATCE 251 (335)
T ss_dssp CHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH-TCGGG--EEEEESCTTTSCC-CSCEEEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc-CCCcc--eEEEecccccCCC-CCCCcEEEEcchhccCCHHHHH
Confidence 5555433333356899999999 9999999999884 76533 9999999876322 23499999988776653
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 252 ~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 252 QLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp HHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCcEEEEEee
Confidence 346789999999998754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=69.96 Aligned_cols=81 Identities=19% Similarity=0.094 Sum_probs=61.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++...... +.+|+++|+++++++.|++++ + ++++.+|..... ..++||+|++......++
T Consensus 55 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------~---~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~ 121 (211)
T 3e23_A 55 GYQAEAMLAA--GFDVDATDGSPELAAEASRRL-------G---RPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELA 121 (211)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-------T---SCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHH
T ss_pred CHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-------C---CceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHH
Confidence 5555433222 469999999999999999886 2 456778876543 567899999998887664
Q ss_pred ---HHHHhhCCCCcEEEEEecc
Q psy14971 77 ---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|||||++++....
T Consensus 122 ~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 122 DVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEEEcC
Confidence 3567899999999998754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=75.52 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=64.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----c
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----E 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~ 74 (156)
.|.++..+...+ ..+|+++|+++ +++.|+++++.+ ++ ++ ++++.+|..+. +..++||+|++..... .
T Consensus 61 tG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~-~l~~~---v~~~~~d~~~~-~~~~~~D~Ivs~~~~~~~~~~~ 133 (348)
T 2y1w_A 61 SGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSN-NLTDR---IVVIPGKVEEV-SLPEQVDIIISEPMGYMLFNER 133 (348)
T ss_dssp TSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHT-TCTTT---EEEEESCTTTC-CCSSCEEEEEECCCBTTBTTTS
T ss_pred ccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHc-CCCCc---EEEEEcchhhC-CCCCceeEEEEeCchhcCChHH
Confidence 377777655543 36999999996 899999999884 77 46 99999998763 2235799999986543 2
Q ss_pred hHH---HHHhhCCCCcEEEEEe
Q psy14971 75 VPK---EILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~~---~l~~~L~pGGrLv~~~ 93 (156)
+++ .+.+.|||||++++..
T Consensus 134 ~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 134 MLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp HHHHHHHGGGGEEEEEEEESCE
T ss_pred HHHHHHHHHhhcCCCeEEEEec
Confidence 233 3468999999998544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=74.45 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=57.3
Q ss_pred CCCEE--EEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE--ccCCCCC------CCCCCcCEEEEccCCCchH------
Q psy14971 13 ERALV--LILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV--KDGSKGH------AEEGPYDIIHLGAACIEVP------ 76 (156)
Q Consensus 13 ~~g~V--~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~--gD~~~~~------~~~~~fD~I~i~~~~~~i~------ 76 (156)
+..+| +++|.+++|++.|+++++..-++.| +++.. +++.+.. ...++||+|++....++++
T Consensus 79 ~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l 155 (292)
T 2aot_A 79 PGVCINNEVVEPSAEQIAKYKELVAKTSNLEN---VKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATL 155 (292)
T ss_dssp TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTT---EEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHH
T ss_pred CCceeeEEEEeCCHHHHHHHHHHHHhccCCCc---ceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHH
Confidence 45655 9999999999999999865114556 76654 3432211 1246899999999988765
Q ss_pred HHHHhhCCCCcEEEEEec
Q psy14971 77 KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 156 ~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 156 KFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp HHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEe
Confidence 356889999999999754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-07 Score=74.18 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchHH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVPK--- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~~--- 77 (156)
|.++.......|..+++++|+ +++++.|+++++. .+..++ ++++.+|..+..+ ....||+|++....++.++
T Consensus 191 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~--v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~ 266 (352)
T 3mcz_A 191 GTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHA-HDLGGR--VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREA 266 (352)
T ss_dssp CHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH-TTCGGG--EEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHh-cCCCCc--eEEEeCCcccCcccCCCCccEEEEecccccCCHHHH
Confidence 556654334456689999999 8999999999988 476443 9999999876431 2356999999988876543
Q ss_pred -----HHHhhCCCCcEEEEEec
Q psy14971 78 -----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 -----~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||+|++...
T Consensus 267 ~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 267 REVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEEe
Confidence 46789999999998653
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=65.72 Aligned_cols=83 Identities=18% Similarity=0.083 Sum_probs=60.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC-CCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA-CIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~-~~~i----- 75 (156)
|.++...... +.+|+++|+++++++.|++++. + ++++.+|..+......+||+|++... ...+
T Consensus 58 G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~------~---~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~ 126 (195)
T 3cgg_A 58 GRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP------E---ARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGR 126 (195)
T ss_dssp THHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT------T---SEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHH
T ss_pred CHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC------C---CcEEEcccccCCCCCCceeEEEECCcHHhhcChHHH
Confidence 4555433333 4699999999999999998753 4 78999998764333468999999843 3333
Q ss_pred ---HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ---PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ---~~~l~~~L~pGGrLv~~~~~ 95 (156)
...+.+.|+|||++++....
T Consensus 127 ~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 127 EPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEET
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC
Confidence 23567899999999997754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=68.17 Aligned_cols=90 Identities=8% Similarity=-0.002 Sum_probs=61.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeC-CHHHHHHHHHHH-----hhhcCCC-----CccceEEEEccCCCC---CC---CCCCc
Q psy14971 1 MGDLNVIVGIKGERALVLILNH-YMKVKSKNQNNK-----KLNIKQN-----RKSFKNVSVKDGSKG---HA---EEGPY 63 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~-~~~~~~~A~~~l-----~~~~g~~-----n~~~v~~~~gD~~~~---~~---~~~~f 63 (156)
.|.+++.+...+ .++|+++|+ ++++++.|++|+ +. .++. + ++++..|..+. .. ...+|
T Consensus 90 ~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~-~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~f 164 (281)
T 3bzb_A 90 AGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANS-CSSETVKRAS---PKVVPYRWGDSPDSLQRCTGLQRF 164 (281)
T ss_dssp TSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC-----------CC---CEEEECCTTSCTHHHHHHHSCSSB
T ss_pred ccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhh-cccccCCCCC---eEEEEecCCCccHHHHhhccCCCC
Confidence 477887665555 359999999 899999999999 55 2543 5 88886554332 11 23679
Q ss_pred CEEEEccCCCch------HHHHHhhCC---C--CcEEEEEecc
Q psy14971 64 DIIHLGAACIEV------PKEILAQLK---P--GGRLVFHKGL 95 (156)
Q Consensus 64 D~I~i~~~~~~i------~~~l~~~L~---p--GGrLv~~~~~ 95 (156)
|+|++.....+. .+.+.+.|+ | ||++++....
T Consensus 165 D~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 165 QVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp SEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred CEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 999986555432 245678899 9 9998886553
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.2e-08 Score=73.55 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=63.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-----------------------------CCccce-EEEEc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-----------------------------NRKSFK-NVSVK 51 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-----------------------------~n~~~v-~~~~g 51 (156)
|.++......+. .+|+++|+++.+++.|+++++.. +. .+ + +++.+
T Consensus 68 G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---v~~~~~~ 142 (265)
T 2i62_A 68 TIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKE-PGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA---IKQVLKC 142 (265)
T ss_dssp CCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTC-TTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH---EEEEEEC
T ss_pred cHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcC-CccccchhhhhhhhcccccccchHHHHHHhhhh---heeEEEe
Confidence 344443333332 48999999999999999998652 20 12 6 89999
Q ss_pred cCCCCCC-CC---CCcCEEEEccCCC----chH------HHHHhhCCCCcEEEEEecc
Q psy14971 52 DGSKGHA-EE---GPYDIIHLGAACI----EVP------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 52 D~~~~~~-~~---~~fD~I~i~~~~~----~i~------~~l~~~L~pGGrLv~~~~~ 95 (156)
|..+..+ .. ++||+|++....+ .++ ..+.+.|||||+|++....
T Consensus 143 d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 143 DVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp CTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred eeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 9876433 23 6899999988776 432 3567899999999997643
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=78.92 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=67.1
Q ss_pred CchHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccc-eEEEEccCCCCCC-C-CCCcCEEEEccCCC--c
Q psy14971 1 MGDLNVIVGIKGE-RALVLILNHYMKVKSKNQNNKKLNIKQNRKSF-KNVSVKDGSKGHA-E-EGPYDIIHLGAACI--E 74 (156)
Q Consensus 1 ~G~la~la~l~g~-~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~-v~~~~gD~~~~~~-~-~~~fD~I~i~~~~~--~ 74 (156)
.|.+++.+..... .++|+++|++++.++.+++|++.+ |+++ . ++++.+|+.+... . ...||+|+++.-.. .
T Consensus 63 tG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N-gl~~--~~v~v~~~Da~~~l~~~~~~~fD~V~lDP~g~~~~ 139 (392)
T 3axs_A 63 SGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-NIPE--DRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVP 139 (392)
T ss_dssp TSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT-TCCG--GGEEEECSCHHHHHHSCCSSCEEEEEECCSSCCHH
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh-CCCC--ceEEEEeCCHHHHHHHhhCCCCcEEEECCCcCHHH
Confidence 4778876544322 268999999999999999999985 7754 2 7899999855322 2 35799999998321 3
Q ss_pred hHHHHHhhCCCCcEEEEEe
Q psy14971 75 VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~ 93 (156)
+-+...+.|++||+|++..
T Consensus 140 ~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 140 FIESVALSMKRGGILSLTA 158 (392)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEEe
Confidence 4556778899999888865
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6e-07 Score=71.13 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhc------CCCCccceEEEEccCCCCC-----C-CCCCcCEEEEccCCCch----H
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNI------KQNRKSFKNVSVKDGSKGH-----A-EEGPYDIIHLGAACIEV----P 76 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~------g~~n~~~v~~~~gD~~~~~-----~-~~~~fD~I~i~~~~~~i----~ 76 (156)
+..+|+++|+++++++.|++++...- +..+ ++++++|+.+.. + ..++||+|++..+.+.+ +
T Consensus 56 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 132 (313)
T 3bgv_A 56 RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFS---AEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYE 132 (313)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCE---EEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccce---EEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHH
Confidence 45799999999999999999987620 2235 999999987642 2 23589999999887544 2
Q ss_pred ------HHHHhhCCCCcEEEEEec
Q psy14971 77 ------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ------~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 133 ~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 133 QADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEecC
Confidence 346789999999999765
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-07 Score=70.17 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=57.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC--CCCCCCCcCEEEEccCCCchH--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK--GHAEEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~--~~~~~~~fD~I~i~~~~~~i~-- 76 (156)
.|.++..+... .++|+++|++++|++.|+++++.. . +.....+... .....++||+|+++...++++
T Consensus 56 tG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~----~---v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~ 126 (261)
T 3iv6_A 56 TRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR----C---VTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTE 126 (261)
T ss_dssp CHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS----C---CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHH
T ss_pred chHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc----c---ceeeeeecccccccccCCCccEEEEhhhhHhCCHH
Confidence 36666543333 379999999999999999998752 2 3433334322 111246899999998876542
Q ss_pred ------HHHHhhCCCCcEEEEEec
Q psy14971 77 ------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ------~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.| |||+|++.+.
T Consensus 127 ~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 127 EARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred HHHHHHHHHHHhC-cCcEEEEEec
Confidence 2456788 9999999765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-07 Score=71.66 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=57.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCC------CccceEEEEccCCCCC--------CCCCCcCEEEEccCCCc-----
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQN------RKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~------n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~~~----- 74 (156)
.++|+|+|++++|++.|+++... .+.. + +++.++|..... ...++||+|++..+.+.
T Consensus 71 ~~~v~GiD~S~~~l~~A~~~~~~-~~~~~~~~~~~---~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~ 146 (302)
T 2vdw_A 71 IALLVATDPDADAIARGNERYNK-LNSGIKTKYYK---FDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR 146 (302)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHH-HCC----CCCE---EEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-ccccccccccc---cchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHH
Confidence 47999999999999999999876 3532 3 567788762211 12468999998776532
Q ss_pred ----hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ----VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ----i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+...+.+.|||||++++....
T Consensus 147 ~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 147 HYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp THHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 224678999999999987653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.7e-07 Score=74.98 Aligned_cols=78 Identities=10% Similarity=-0.008 Sum_probs=59.1
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------h---HHHHHhhCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-------V---PKEILAQLK 84 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-------i---~~~l~~~L~ 84 (156)
.+|+++|+++++++.|++|++.+ |+.+. ++++++|+.+... ..+||+|+++.+... + -..+.+.||
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~-gl~~~--I~~~~~D~~~~~~-~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEA-GLGDL--ITFRQLQVADFQT-EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK 339 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHT-TCTTC--SEEEECCGGGCCC-CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHc-CCCCc--eEEEECChHhCCC-CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence 57999999999999999999984 87643 9999999987433 358999999976521 1 122334444
Q ss_pred --CCcEEEEEeccC
Q psy14971 85 --PGGRLVFHKGLH 96 (156)
Q Consensus 85 --pGGrLv~~~~~~ 96 (156)
+||++++.....
T Consensus 340 ~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 340 RMPTWSVYVLTSYE 353 (393)
T ss_dssp TCTTCEEEEEECCT
T ss_pred cCCCCEEEEEECCH
Confidence 499999988754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-07 Score=65.97 Aligned_cols=79 Identities=11% Similarity=0.089 Sum_probs=59.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+ .+|+++|+++++++.|+++ . .+ ++++.+| ... ..+.||.|++......++
T Consensus 29 G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--~----~~---v~~~~~d--~~~-~~~~~D~v~~~~~l~~~~~~~~~ 94 (170)
T 3i9f_A 29 GFYCKYLLEFA--TKLYCIDINVIALKEVKEK--F----DS---VITLSDP--KEI-PDNSVDFILFANSFHDMDDKQHV 94 (170)
T ss_dssp CTTHHHHHTTE--EEEEEECSCHHHHHHHHHH--C----TT---SEEESSG--GGS-CTTCEEEEEEESCSTTCSCHHHH
T ss_pred CHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh--C----CC---cEEEeCC--CCC-CCCceEEEEEccchhcccCHHHH
Confidence 44444333323 4999999999999999988 1 35 8999999 222 346899999999887653
Q ss_pred -HHHHhhCCCCcEEEEEec
Q psy14971 77 -KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 95 l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 95 ISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEEEc
Confidence 467899999999999754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-07 Score=71.99 Aligned_cols=77 Identities=17% Similarity=0.027 Sum_probs=56.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhc-CC---------------------------CCccceE-EEEccCCCCCC----CCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNI-KQ---------------------------NRKSFKN-VSVKDGSKGHA----EEG 61 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~-g~---------------------------~n~~~v~-~~~gD~~~~~~----~~~ 61 (156)
.+|+++|+++.|++.|+++++..- ++ .+ ++ ++.+|..+..+ ..+
T Consensus 79 ~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~D~~~~~~~~~~~~~ 155 (263)
T 2a14_A 79 QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA---VKRVLKCDVHLGNPLAPAVLP 155 (263)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH---EEEEEECCTTSSSTTTTCCCC
T ss_pred cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh---hheEEeccccCCCCCCccccC
Confidence 479999999999999999875410 00 12 44 88999877422 246
Q ss_pred CcCEEEEccCCCch----H------HHHHhhCCCCcEEEEEec
Q psy14971 62 PYDIIHLGAACIEV----P------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 62 ~fD~I~i~~~~~~i----~------~~l~~~L~pGGrLv~~~~ 94 (156)
+||+|++....+.+ + ..+.+.|||||+|++...
T Consensus 156 ~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 156 LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 89999999876543 2 345699999999999764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=71.56 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=64.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--- 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--- 77 (156)
.|.+++.+... ..+|+++|+++++++.|++|++.+ ++ + ++++.+|+.+..+. .||.|+++.+.....+
T Consensus 301 ~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~n-gl-~---v~~~~~d~~~~~~~--~fD~Vv~dPPr~g~~~~~~ 371 (425)
T 2jjq_A 301 VGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEIN-NV-D---AEFEVASDREVSVK--GFDTVIVDPPRAGLHPRLV 371 (425)
T ss_dssp TTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH-TC-C---EEEEECCTTTCCCT--TCSEEEECCCTTCSCHHHH
T ss_pred chHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc-CC-c---EEEEECChHHcCcc--CCCEEEEcCCccchHHHHH
Confidence 36666543332 369999999999999999999885 65 4 89999999875443 7999999987654433
Q ss_pred HHHhhCCCCcEEEEEec
Q psy14971 78 EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~ 94 (156)
.....|+|||++++...
T Consensus 372 ~~l~~l~p~givyvsc~ 388 (425)
T 2jjq_A 372 KRLNREKPGVIVYVSCN 388 (425)
T ss_dssp HHHHHHCCSEEEEEESC
T ss_pred HHHHhcCCCcEEEEECC
Confidence 23456899999988754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.42 E-value=5e-07 Score=76.59 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=63.8
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~----- 74 (156)
.|.+++.+... +..+|+++|+++ +++.|+++++.+ |+ ++ ++++.+|..+. +..++||+|+++.....
T Consensus 169 tG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~-gl~~~---v~~~~~d~~~~-~~~~~fD~Ivs~~~~~~~~~e~ 241 (480)
T 3b3j_A 169 SGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN-NLTDR---IVVIPGKVEEV-SLPEQVDIIISEPMGYMLFNER 241 (480)
T ss_dssp TTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHT-TCTTT---EEEEESCTTTC-CCSSCEEEEECCCCHHHHTCHH
T ss_pred ccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHc-CCCCc---EEEEECchhhC-ccCCCeEEEEEeCchHhcCcHH
Confidence 37777765554 347999999998 999999999984 87 46 99999998763 22357999999765321
Q ss_pred hHH---HHHhhCCCCcEEEEEe
Q psy14971 75 VPK---EILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~~---~l~~~L~pGGrLv~~~ 93 (156)
+.+ .+.+.|||||+|++..
T Consensus 242 ~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 242 MLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHHHHHHGGGGEEEEEEEESCE
T ss_pred HHHHHHHHHHhcCCCCEEEEEe
Confidence 222 3368899999998543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.7e-07 Score=68.20 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=57.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i----- 75 (156)
|.++......+ .+|+++|+++++++.|++++ .+ ++++.+|+.+... ..+||+|++.. ....+
T Consensus 52 G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~------~~---~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~ 119 (239)
T 3bxo_A 52 GTHLEHFTKEF--GDTAGLELSEDMLTHARKRL------PD---ATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEE 119 (239)
T ss_dssp SHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC------TT---CEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHH
T ss_pred CHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC------CC---CEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHH
Confidence 55554332223 38999999999999999864 25 8899999876433 56899999544 44433
Q ss_pred ----HHHHHhhCCCCcEEEEEe
Q psy14971 76 ----PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ----~~~l~~~L~pGGrLv~~~ 93 (156)
...+.+.|+|||++++..
T Consensus 120 ~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 120 LGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp HHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCeEEEEEe
Confidence 135678999999999964
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=71.06 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=64.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCCCchHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++.+... .++|+++|+++++++.|++|++.+ +++| ++++.+|+.+.+.. ...||.|+++.+.....+
T Consensus 298 G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~-~~~~---v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~ 371 (433)
T 1uwv_A 298 GNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLN-GLQN---VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG 371 (433)
T ss_dssp TTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHT-TCCS---EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHH
T ss_pred CHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc-CCCc---eEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHHH
Confidence 5666543322 479999999999999999999984 8888 99999999874432 357999999987765443
Q ss_pred H--HHhhCCCCcEEEEEec
Q psy14971 78 E--ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ~--l~~~L~pGGrLv~~~~ 94 (156)
. ....++|++.+++...
T Consensus 372 ~~~~l~~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 372 VMQQIIKLEPIRIVYVSCN 390 (433)
T ss_dssp HHHHHHHHCCSEEEEEESC
T ss_pred HHHHHHhcCCCeEEEEECC
Confidence 2 1234678887777553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=68.66 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=66.0
Q ss_pred chHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhh----cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc
Q psy14971 2 GDLNVIVGIK--GERALVLILNHYMKVKSKNQNNKKLN----IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~----~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~ 74 (156)
|+-+++-+++ .+..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+.+-+.. ...||+|+++..-+.
T Consensus 93 GdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpR---v~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~ 169 (294)
T 3o4f_A 93 GDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPR---FKLVIDDGVNFVNQTSQTFDVIISDCTDPI 169 (294)
T ss_dssp TTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTT---EEEEESCTTTTTSCSSCCEEEEEESCCCCC
T ss_pred CchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCc---EEEEechHHHHHhhccccCCEEEEeCCCcC
Confidence 3344443333 23579999999999999999988541 12234 99999999875543 468999999986432
Q ss_pred ----------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 ----------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 ----------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.-+.+.+.|+|||++++-.+.
T Consensus 170 ~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 170 GPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp CTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 125678999999999997653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-07 Score=70.29 Aligned_cols=81 Identities=10% Similarity=0.052 Sum_probs=59.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++... ..++.+|+++|+++.+++.|+++. | ++++.+|+.+.....++||.|++.....+++
T Consensus 46 G~~~~~l--~~~~~~v~gvD~s~~~~~~a~~~~-------~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 113 (261)
T 3ege_A 46 GGYSVAL--ANQGLFVYAVEPSIVMRQQAVVHP-------Q---VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKS 113 (261)
T ss_dssp SHHHHHH--HTTTCEEEEECSCHHHHHSSCCCT-------T---EEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHH
T ss_pred cHHHHHH--HhCCCEEEEEeCCHHHHHHHHhcc-------C---CEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHH
Confidence 4444332 236689999999999988776432 5 9999999976433457899999999876553
Q ss_pred -HHHHhhCCCCcEEEEEecc
Q psy14971 77 -KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|| ||++++....
T Consensus 114 l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 114 FQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp HHHHHHHBC-SSCEEEEEEC
T ss_pred HHHHHHHhC-CcEEEEEEcC
Confidence 35788999 9988876543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-06 Score=71.02 Aligned_cols=78 Identities=5% Similarity=-0.101 Sum_probs=59.5
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-------chH---HHHHhhCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-------EVP---KEILAQLK 84 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-------~i~---~~l~~~L~ 84 (156)
.+|+++|+++++++.|++|++.+ |+.+. ++++.+|+.+... ..+||.|+++.+.. .+. ..+.+.||
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~-gl~~~--I~~~~~D~~~l~~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk 332 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREV-GLEDV--VKLKQMRLQDFKT-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFA 332 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHT-TCTTT--EEEEECCGGGCCC-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCHHHHHHHHHHHHHc-CCCCc--eEEEECChHHCCc-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999994 87654 9999999887433 35899999997642 111 12344555
Q ss_pred C--CcEEEEEeccC
Q psy14971 85 P--GGRLVFHKGLH 96 (156)
Q Consensus 85 p--GGrLv~~~~~~ 96 (156)
+ ||++++.....
T Consensus 333 ~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 333 PLKTWSQFILTNDT 346 (384)
T ss_dssp TCTTSEEEEEESCT
T ss_pred hCCCcEEEEEECCH
Confidence 4 99999988754
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=70.04 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=59.4
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch-------------------
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------------------- 75 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------------------- 75 (156)
..|+|+|+++.+++.|+.|+... |. + +.++.+|...... ..+||+|+++.+...+
T Consensus 160 ~~v~GiDi~~~~~~~a~~n~~~~-g~-~---~~i~~~D~l~~~~-~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~ 233 (344)
T 2f8l_A 160 VHASGVDVDDLLISLALVGADLQ-RQ-K---MTLLHQDGLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSF 233 (344)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHH-TC-C---CEEEESCTTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEE
T ss_pred ceEEEEECCHHHHHHHHHHHHhC-CC-C---ceEEECCCCCccc-cCCccEEEECCCCCCcCchhhhhhccccCCCCcch
Confidence 78999999999999999999884 77 6 8999999876443 4679999999774221
Q ss_pred -----HHHHHhhCCCCcEEEEEe
Q psy14971 76 -----PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 -----~~~l~~~L~pGGrLv~~~ 93 (156)
-..+.+.|+|||++++.+
T Consensus 234 ~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 234 AHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEE
Confidence 234568999999999987
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=9.5e-07 Score=69.83 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=61.5
Q ss_pred HHH-HHHhcCC---CCEEEEEeCCHHHHHHHHHHHh--------------hhc--------C---C-----CCccceEEE
Q psy14971 4 LNV-IVGIKGE---RALVLILNHYMKVKSKNQNNKK--------------LNI--------K---Q-----NRKSFKNVS 49 (156)
Q Consensus 4 la~-la~l~g~---~g~V~avD~~~~~~~~A~~~l~--------------~~~--------g---~-----~n~~~v~~~ 49 (156)
+|+ +++..+. +.+|+|+|+++++++.|+++.- +.+ | + .+ |+|.
T Consensus 123 iAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~---V~F~ 199 (274)
T 1af7_A 123 IAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANY---VEFS 199 (274)
T ss_dssp HHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTT---EEEE
T ss_pred HHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhccc---CeEE
Confidence 554 3455453 3489999999999999999751 000 0 0 24 9999
Q ss_pred EccCCCC-CCCCCCcCEEEEccCCCch--------HHHHHhhCCCCcEEEEEec
Q psy14971 50 VKDGSKG-HAEEGPYDIIHLGAACIEV--------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 50 ~gD~~~~-~~~~~~fD~I~i~~~~~~i--------~~~l~~~L~pGGrLv~~~~ 94 (156)
.+|..+. ++..++||+|++......+ -..+.+.|+|||.|++-..
T Consensus 200 ~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 200 SVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp ECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 9998873 3324689999997765433 2356789999999998543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.5e-07 Score=74.37 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=66.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC------CCccceEEEEccCCCCC-CCCCCcCEEEEccCCCc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ------NRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~------~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~ 74 (156)
|..+.||++ +..+.|+++|+++..++..++|+++ ++. .| +.+...|+.... .....||+|+++++|+.
T Consensus 161 GKT~~la~~-~~~~~l~A~D~~~~R~~~l~~~l~r-~~~~~~~~~~~---v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 161 GKTLALLQT-GCCRNLAANDLSPSRIARLQKILHS-YVPEEIRDGNQ---VRVTSWDGRKWGELEGDTYDRVLVDVPCTT 235 (359)
T ss_dssp HHHHHHHHT-TCEEEEEEECSCHHHHHHHHHHHHH-HSCTTTTTSSS---EEEECCCGGGHHHHSTTCEEEEEEECCCCC
T ss_pred HHHHHHHHh-cCCCcEEEEcCCHHHHHHHHHHHHH-hhhhhhccCCc---eEEEeCchhhcchhccccCCEEEECCccCC
Confidence 344456654 4558999999999999999999998 464 35 889999976521 12467999999999864
Q ss_pred h--------H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 75 V--------P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 i--------~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
- | ....+.|||||+||..+++
T Consensus 236 ~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 236 DRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp HHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 1 1 1235779999999998873
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=68.72 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=68.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|-||+......+.++|+++|+|+.+++.+++|+.. +|+ + .++.+.|.....+ .++||++++.-..+.+.+
T Consensus 144 GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~-~g~-~---~~~~v~D~~~~~p-~~~~DvaL~lkti~~Le~q~kg 217 (281)
T 3lcv_B 144 NPLAAPWMGLPAETVYIASDIDARLVGFVDEALTR-LNV-P---HRTNVADLLEDRL-DEPADVTLLLKTLPCLETQQRG 217 (281)
T ss_dssp GGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHH-TTC-C---EEEEECCTTTSCC-CSCCSEEEETTCHHHHHHHSTT
T ss_pred cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh-cCC-C---ceEEEeeecccCC-CCCcchHHHHHHHHHhhhhhhH
Confidence 45565555556789999999999999999999998 476 4 7899999877654 468999999988877653
Q ss_pred ---HHHhhCCCCcEEEEE
Q psy14971 78 ---EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~~ 92 (156)
.+++.|+++|.+|-.
T Consensus 218 ~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 218 SGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHHHHSSCSEEEEEE
T ss_pred HHHHHHHHhCCCCEEEec
Confidence 578899999887763
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=61.86 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------- 74 (156)
|.++..+...+ +|+++|+++++++. . ++ ++++.+|+.+..++ ++||+|+++.+...
T Consensus 35 G~~~~~l~~~~---~v~gvD~s~~~~~~------~----~~---~~~~~~d~~~~~~~-~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 35 GVITEQLRKRN---TVVSTDLNIRALES------H----RG---GNLVRADLLCSINQ-ESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp CHHHHHHTTTS---EEEEEESCHHHHHT------C----SS---SCEEECSTTTTBCG-GGCSEEEECCCCBTTCCCTTT
T ss_pred cHHHHHHHhcC---cEEEEECCHHHHhc------c----cC---CeEEECChhhhccc-CCCCEEEECCCCccCCccccc
Confidence 55555443333 99999999999987 2 35 88999999875443 78999999876542
Q ss_pred --------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 --------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+.+.| |||++++...
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 224677788 9999999764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=8.7e-07 Score=69.32 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=59.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh----------------cCC-------------CCccceEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN----------------IKQ-------------NRKSFKNVSVKD 52 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~----------------~g~-------------~n~~~v~~~~gD 52 (156)
|.++.++... ...+|+++|++++|++.|+++++.. .+. .. ++++.+|
T Consensus 83 G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~D 158 (289)
T 2g72_A 83 TVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARV---KRVLPID 158 (289)
T ss_dssp CCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHE---EEEECCC
T ss_pred ChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhh---ceEEecc
Confidence 4444433332 2469999999999999999876530 010 01 4577778
Q ss_pred CCCCCC------CCCCcCEEEEccCCCc----hH------HHHHhhCCCCcEEEEEe
Q psy14971 53 GSKGHA------EEGPYDIIHLGAACIE----VP------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 53 ~~~~~~------~~~~fD~I~i~~~~~~----i~------~~l~~~L~pGGrLv~~~ 93 (156)
+.+..+ ..++||+|++...... ++ ..+.+.|||||+|++..
T Consensus 159 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 159 VHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp TTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 876322 1246999999988765 33 25689999999999964
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.6e-07 Score=71.60 Aligned_cols=88 Identities=8% Similarity=0.118 Sum_probs=65.4
Q ss_pred chHHH-HHHhcC----CCCEEEEEeCCH--------------------------HHHHHHHHHHhhhcCC--CCccceEE
Q psy14971 2 GDLNV-IVGIKG----ERALVLILNHYM--------------------------KVKSKNQNNKKLNIKQ--NRKSFKNV 48 (156)
Q Consensus 2 G~la~-la~l~g----~~g~V~avD~~~--------------------------~~~~~A~~~l~~~~g~--~n~~~v~~ 48 (156)
|+-++ ||..+. +.++|+++|..+ ..++.+++|+++ .|+ ++ |++
T Consensus 118 G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~-~gl~~~~---I~l 193 (282)
T 2wk1_A 118 GGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN-YDLLDEQ---VRF 193 (282)
T ss_dssp SHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH-TTCCSTT---EEE
T ss_pred hHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH-cCCCcCc---eEE
Confidence 55553 455543 478999999642 147889999999 587 56 999
Q ss_pred EEccCCCCCCC--CCCcCEEEEccCCC-ch---HHHHHhhCCCCcEEEEEe
Q psy14971 49 SVKDGSKGHAE--EGPYDIIHLGAACI-EV---PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 49 ~~gD~~~~~~~--~~~fD~I~i~~~~~-~i---~~~l~~~L~pGGrLv~~~ 93 (156)
+.||+.+.++. .++||.|++++... .. -+.+.++|+|||.+++..
T Consensus 194 i~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 194 LPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp EESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred EEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcC
Confidence 99999765543 36899999999862 22 356788999999999854
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=66.43 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=57.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch---H--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---P-- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~-- 76 (156)
|.++...... +.+|+++|+++++++.|+++.. + . ++.+|+.+.....++||+|++.....++ +
T Consensus 66 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~------~---~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~ 133 (260)
T 2avn_A 66 GKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV------K---N-VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK 133 (260)
T ss_dssp CHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC------S---C-EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred CHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC------C---C-EEECcHHHCCCCCCCEEEEEEcchhhhccccHHH
Confidence 4555433222 4699999999999999998753 1 2 6778887643335789999997654332 2
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 134 ~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 134 AFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEeC
Confidence 456789999999998754
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-07 Score=67.38 Aligned_cols=67 Identities=25% Similarity=0.238 Sum_probs=53.0
Q ss_pred EEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCCch-H------HHHHhhCCCCcE
Q psy14971 19 ILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACIEV-P------KEILAQLKPGGR 88 (156)
Q Consensus 19 avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~~i-~------~~l~~~L~pGGr 88 (156)
++|++++|++.|++++.. + ++++.+|+.+... ...+||+|++....+.+ + ..+.+.|||||+
T Consensus 25 ~vD~s~~ml~~a~~~~~~-----~---~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~ 96 (176)
T 2ld4_A 25 PVEALKGLVDKLQALTGN-----E---GRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGC 96 (176)
T ss_dssp CHHHHHHHHHHHHHHTTT-----T---SEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEE
T ss_pred eeeCCHHHHHHHHHhccc-----C---cEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEE
Confidence 389999999999988642 4 8899999875433 35789999998877665 3 467899999999
Q ss_pred EEEEe
Q psy14971 89 LVFHK 93 (156)
Q Consensus 89 Lv~~~ 93 (156)
+++..
T Consensus 97 l~~~~ 101 (176)
T 2ld4_A 97 LFLKE 101 (176)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99953
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-06 Score=64.73 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=57.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC----CCCCCCcCEEEEccCCC----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG----HAEEGPYDIIHLGAACI---- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~----~~~~~~fD~I~i~~~~~---- 73 (156)
|.++...... +.+|+++|+++++++.|+++ . + +.++.+|..+. .....+||.|++.....
T Consensus 64 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~-----~---~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~~~ 131 (227)
T 3e8s_A 64 GWLLRALADR--GIEAVGVDGDRTLVDAARAA--G-----A---GEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDI 131 (227)
T ss_dssp CHHHHHHHTT--TCEEEEEESCHHHHHHHHHT--C-----S---SCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSSCC
T ss_pred CHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh--c-----c---cccchhhHHhhcccccccCCCccEEEECchhhhhhH
Confidence 4455433222 46999999999999999977 1 3 55677765432 23345699999988765
Q ss_pred -chHHHHHhhCCCCcEEEEEec
Q psy14971 74 -EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.+.|||||+|++...
T Consensus 132 ~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 132 IELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEEec
Confidence 223567899999999999765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.8e-06 Score=61.80 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=55.2
Q ss_pred chHHH-HHHhcCC-CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------------------
Q psy14971 2 GDLNV-IVGIKGE-RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---------------------- 57 (156)
Q Consensus 2 G~la~-la~l~g~-~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---------------------- 57 (156)
|.++. ++...++ .++|+++|+++. . ...+ ++++.+|..+..
T Consensus 34 G~~~~~l~~~~~~~~~~v~gvD~s~~---------~---~~~~---v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 34 GSWCQVILERTKNYKNKIIGIDKKIM---------D---PIPN---VYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp CHHHHHHHHHTTTSCEEEEEEESSCC---------C---CCTT---CEEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CHHHHHHHHHcCCCCceEEEEeCCcc---------C---CCCC---ceEEEccccchhhhhhccccccccccchhhHHHH
Confidence 66665 4555553 689999999983 1 2346 899999987643
Q ss_pred ---CCCCCcCEEEEccCCCc-----------------hHHHHHhhCCCCcEEEEEec
Q psy14971 58 ---AEEGPYDIIHLGAACIE-----------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 58 ---~~~~~fD~I~i~~~~~~-----------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
....+||.|+++++.+. +...+.+.|||||++++.+.
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 13468999999886543 12246789999999998654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.2e-06 Score=68.44 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=59.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-h------H---HHHHhhCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-V------P---KEILAQLK 84 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-i------~---~~l~~~L~ 84 (156)
.+|+++|+++++++.|++|++.+ |+.+. +++.++|+.+... ..+||+|+++.+... + . ..+.+.|+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~-gl~~~--i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIA-GVDEY--IEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR 333 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHH-TCGGG--EEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHc-CCCCc--eEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999985 87522 9999999887433 358999999988631 1 1 12344555
Q ss_pred C--CcEEEEEeccC
Q psy14971 85 P--GGRLVFHKGLH 96 (156)
Q Consensus 85 p--GGrLv~~~~~~ 96 (156)
+ ||++++.....
T Consensus 334 ~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 334 KLKNWSYYLITSYE 347 (385)
T ss_dssp TSBSCEEEEEESCT
T ss_pred hCCCCEEEEEECCH
Confidence 4 99999987643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-07 Score=71.46 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=51.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh--cCCCCccceEEEE-ccCCCCCCCCCCcCEEEEccCCCchH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLN--IKQNRKSFKNVSV-KDGSKGHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~--~g~~n~~~v~~~~-gD~~~~~~~~~~fD~I~i~~~~~~i~ 76 (156)
.|.++. +++. +. .+|+++|++++|++.|+++..+. .+..| +++.. +|.....++...||.++++. ..+.
T Consensus 48 tG~~t~~la~~-g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~D~v~~~l--~~~l 120 (232)
T 3opn_A 48 TGGFTDVMLQN-GA-KLVYALDVGTNQLAWKIRSDERVVVMEQFN---FRNAVLADFEQGRPSFTSIDVSFISL--DLIL 120 (232)
T ss_dssp TSHHHHHHHHT-TC-SEEEEECSSCCCCCHHHHTCTTEEEECSCC---GGGCCGGGCCSCCCSEEEECCSSSCG--GGTH
T ss_pred CCHHHHHHHhc-CC-CEEEEEcCCHHHHHHHHHhCccccccccce---EEEeCHhHcCcCCCCEEEEEEEhhhH--HHHH
Confidence 366664 4444 43 59999999999999988765541 11123 33333 33222112222344444332 4456
Q ss_pred HHHHhhCCCCcEEEEEe
Q psy14971 77 KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++.+
T Consensus 121 ~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 121 PPLYEILEKNGEVAALI 137 (232)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEEE
Confidence 78899999999999974
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-06 Score=65.15 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=56.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++..+... +.+|+++|+++++++.|+++ ++++.+|..+.. ...++||+|++.....+++
T Consensus 53 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~------------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~ 118 (240)
T 3dli_A 53 GEFLELCKEE--GIESIGVDINEDMIKFCEGK------------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPER 118 (240)
T ss_dssp THHHHHHHHH--TCCEEEECSCHHHHHHHHTT------------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGG
T ss_pred CHHHHHHHhC--CCcEEEEECCHHHHHHHHhh------------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHH
Confidence 5555433333 36899999999999988755 345666764421 1247899999998876654
Q ss_pred -----HHHHhhCCCCcEEEEEecc
Q psy14971 77 -----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|||||++++....
T Consensus 119 ~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 119 LFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp HHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3567899999999997654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=69.33 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=53.8
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEE-EEccCCCCCCCCCCcCEEEEccCCC----------
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNV-SVKDGSKGHAEEGPYDIIHLGAACI---------- 73 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~-~~gD~~~~~~~~~~fD~I~i~~~~~---------- 73 (156)
.++++++++.++|+++|+++. + .+ +++ +++|+.+... .++||+|+++...+
T Consensus 83 ~~~a~~~~~~~~V~gvDis~~--------v------~~---v~~~i~gD~~~~~~-~~~fD~Vvsn~~~~~~g~~~~d~~ 144 (290)
T 2xyq_A 83 AVLRQWLPTGTLLVDSDLNDF--------V------SD---ADSTLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKEND 144 (290)
T ss_dssp HHHHHHSCTTCEEEEEESSCC--------B------CS---SSEEEESCGGGCCC-SSCEEEEEECCCCCC---CCSCCC
T ss_pred HHHHHHcCCCCEEEEEECCCC--------C------CC---CEEEEECccccCCc-cCcccEEEEcCCcccccccccccc
Confidence 456778887899999999998 1 24 778 9999876322 36799999986532
Q ss_pred -------chHHHHHhhCCCCcEEEEEec
Q psy14971 74 -------EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 -------~i~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.+.|||||++++.+.
T Consensus 145 ~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 145 SKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred chHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 123456789999999999653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=64.83 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=64.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+++..|. |++++.|+++++.. +.++ |+++.||..+.. ...+|++++...+++.++
T Consensus 191 G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~-~~~r---v~~~~gD~~~~~--~~~~D~~~~~~vlh~~~d~~~~ 263 (353)
T 4a6d_A 191 GALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ-EEEQ---IDFQEGDFFKDP--LPEADLYILARVLHDWADGKCS 263 (353)
T ss_dssp SHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCS---EEEEESCTTTSC--CCCCSEEEEESSGGGSCHHHHH
T ss_pred CHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc-ccCc---eeeecCccccCC--CCCceEEEeeeecccCCHHHHH
Confidence 555554444467788888887 89999999998763 5566 999999987642 245899999998876553
Q ss_pred ----HHHhhCCCCcEEEEEec
Q psy14971 78 ----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||+|++...
T Consensus 264 ~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 264 HLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp HHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHhhCCCCCEEEEEEe
Confidence 45788999999999753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=62.63 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=57.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-C-CCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-H-AEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~-~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++......+ .+|+++|+++++++.|++++ .+++.+|+.+. . ...++||.|++.....+++
T Consensus 44 G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~ 110 (230)
T 3cc8_A 44 GALGAAIKENG--TRVSGIEAFPEAAEQAKEKL-----------DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPW 110 (230)
T ss_dssp SHHHHHHHTTT--CEEEEEESSHHHHHHHHTTS-----------SEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHH
T ss_pred CHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC-----------CcEEEcchhhcCCCCCCCccCEEEECChhhhcCCHH
Confidence 55554333333 89999999999999888543 34677887642 1 2246899999988876653
Q ss_pred ---HHHHhhCCCCcEEEEEecc
Q psy14971 77 ---KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~~ 95 (156)
..+.+.|+|||++++....
T Consensus 111 ~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 111 AVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp HHHHHTGGGEEEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEEeCC
Confidence 3457889999999997643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-06 Score=73.14 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=54.5
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCCchH---
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~~i~--- 76 (156)
.+++...|.++|+++|++++|. . ...| ++++++|+.+.... .++||+|+++++. ..+
T Consensus 239 ~la~~~fP~a~V~GVDiSp~m~-------~---~~~r---I~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH-~~~d~~ 304 (419)
T 3sso_A 239 RMWKSFFPRGQIYGLDIMDKSH-------V---DELR---IRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSH-INAHVR 304 (419)
T ss_dssp HHHHHHCTTCEEEEEESSCCGG-------G---CBTT---EEEEECCTTCHHHHHHHHHHHCCEEEEEECSCC-CHHHHH
T ss_pred HHHHHhCCCCEEEEEECCHHHh-------h---cCCC---cEEEEecccccchhhhhhcccCCccEEEECCcc-cchhHH
Confidence 3555556789999999999972 1 2256 99999998763111 4789999998753 322
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 305 ~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 305 TSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp HHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCeEEEEEe
Confidence 45789999999999964
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.16 E-value=4e-06 Score=67.58 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=58.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+++++|+ ++++. +++++. .+..++ ++++.+|..+..+ +||+|++....++.++
T Consensus 196 G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~-~~~~~~--v~~~~~d~~~~~p---~~D~v~~~~vlh~~~d~~~~ 266 (348)
T 3lst_A 196 GGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDA-PDVAGR--WKVVEGDFLREVP---HADVHVLKRILHNWGDEDSV 266 (348)
T ss_dssp SHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCC-GGGTTS--EEEEECCTTTCCC---CCSEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEecC-HHHhh--cccccc-cCCCCC--eEEEecCCCCCCC---CCcEEEEehhccCCCHHHHH
Confidence 556644333346689999999 55555 444443 243333 9999999875444 7999999998876553
Q ss_pred ----HHHhhCCCCcEEEEEec
Q psy14971 78 ----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|||||+|++...
T Consensus 267 ~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 267 RILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp HHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEEEe
Confidence 46789999999999654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-06 Score=65.18 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=48.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.|.++......+ ++|+++|+++++++.|+++++. .+. ++ ++++.+|+.+.. ...||.|+++.+..
T Consensus 39 ~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~-~~~~~~---v~~~~~D~~~~~--~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 39 TGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQG-TPVASK---LQVLVGDVLKTD--LPFFDTCVANLPYQ 104 (285)
T ss_dssp TSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT-STTGGG---EEEEESCTTTSC--CCCCSEEEEECCGG
T ss_pred ccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHh-cCCCCc---eEEEEcceeccc--chhhcEEEEecCcc
Confidence 366665433223 6999999999999999999976 355 46 999999987632 23799999976653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-06 Score=67.90 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=54.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh--cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch--
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLN--IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~--~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i-- 75 (156)
+|.++. +++. | .++|+|+|++++|++.+.++-.+. +...| ++....+ .++ ..+||.|+++.+...+
T Consensus 96 TG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~n---i~~l~~~---~l~-~~~fD~v~~d~sf~sl~~ 166 (291)
T 3hp7_A 96 TGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYN---FRYAEPV---DFT-EGLPSFASIDVSFISLNL 166 (291)
T ss_dssp TSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHTCTTEEEECSCC---GGGCCGG---GCT-TCCCSEEEECCSSSCGGG
T ss_pred ccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHhCcccceecccC---ceecchh---hCC-CCCCCEEEEEeeHhhHHH
Confidence 477774 4444 3 379999999999998865432210 11112 2211111 112 2359999999887654
Q ss_pred -HHHHHhhCCCCcEEEEEec
Q psy14971 76 -PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||+|++.+.
T Consensus 167 vL~e~~rvLkpGG~lv~lvk 186 (291)
T 3hp7_A 167 ILPALAKILVDGGQVVALVK 186 (291)
T ss_dssp THHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHcCcCCEEEEEEC
Confidence 4678999999999999743
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-05 Score=57.46 Aligned_cols=64 Identities=17% Similarity=0.048 Sum_probs=50.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.|.++..+...+. .+|+++|+++++++.|++|++.. ++ + ++++.+|+.+ ++ .+||+|+++.+..
T Consensus 60 ~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~-~~--~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 60 TGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF-KG-K---FKVFIGDVSE-FN--SRVDIVIMNPPFG 123 (207)
T ss_dssp TCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG-TT-S---EEEEESCGGG-CC--CCCSEEEECCCCS
T ss_pred CCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHc-CC-C---EEEEECchHH-cC--CCCCEEEEcCCCc
Confidence 3666665444443 58999999999999999999984 76 7 9999999876 33 4799999998743
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.11 E-value=6e-06 Score=61.90 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=53.2
Q ss_pred EEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCcEEEE
Q psy14971 18 LILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGGRLVF 91 (156)
Q Consensus 18 ~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGGrLv~ 91 (156)
+++|+++++++.|+++ + ++++.+|+.+.....+.||+|++......++ ..+.+.|+|||++++
T Consensus 69 ~~vD~s~~~~~~a~~~--------~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 137 (219)
T 1vlm_A 69 IGVEPSERMAEIARKR--------G---VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIV 137 (219)
T ss_dssp EEEESCHHHHHHHHHT--------T---CEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred hccCCCHHHHHHHHhc--------C---CEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 9999999999998866 3 7788999865433346899999998776543 456789999999999
Q ss_pred Eecc
Q psy14971 92 HKGL 95 (156)
Q Consensus 92 ~~~~ 95 (156)
....
T Consensus 138 ~~~~ 141 (219)
T 1vlm_A 138 GIVD 141 (219)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-06 Score=69.98 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=59.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCC--CccceEEEEccCCCCCCCCCCcCEEEEccCCCc------------------
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQN--RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------------------ 74 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~--n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------------------ 74 (156)
..++|+|+++.+++.|+.|+..+ |+. + +.++++|...... ...||+|+.+.+...
T Consensus 209 ~~i~G~Ei~~~~~~lA~~nl~l~-g~~~~~---~~i~~gD~l~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~ 283 (445)
T 2okc_A 209 KALHGVDNTPLVVTLASMNLYLH-GIGTDR---SPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETK 283 (445)
T ss_dssp TTEEEEESCHHHHHHHHHHHHHT-TCCSSC---CSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS
T ss_pred eEEEEEeCCHHHHHHHHHHHHHh-CCCcCC---CCEeeCCCCCCcc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCc
Confidence 68999999999999999999874 764 5 7899999876433 348999999865431
Q ss_pred -----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-..+.+.|+|||++++++.
T Consensus 284 ~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 284 NNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHHHHHHHHHHHhccCCEEEEEEC
Confidence 12456789999999988764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-06 Score=60.29 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=56.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--------CCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~ 72 (156)
|.++. ++...++..+|+++|+++ +++ ..+ ++++.+|..+.. ...++||.|+++...
T Consensus 34 G~~~~~l~~~~~~~~~v~~~D~~~-~~~-----------~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~ 98 (180)
T 1ej0_A 34 GGWSQYVVTQIGGKGRIIACDLLP-MDP-----------IVG---VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp CHHHHHHHHHHCTTCEEEEEESSC-CCC-----------CTT---EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CHHHHHHHHHhCCCCeEEEEECcc-ccc-----------cCc---EEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence 55554 455557778999999998 642 146 899999987642 234689999998765
Q ss_pred Cc-----------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 73 IE-----------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 73 ~~-----------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
.. +...+.+.|+|||++++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 42 223567899999999996653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-05 Score=61.61 Aligned_cols=81 Identities=10% Similarity=-0.096 Sum_probs=63.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|-|++.+. +..+++++|+|+.+++.+++++.. .| .+ .++.++|.....+. ++||.+++.-..+.+.+
T Consensus 117 gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~-~g-~~---~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE~q~~~ 187 (253)
T 3frh_A 117 NPLALYER---GIASVWGCDIHQGLGDVITPFARE-KD-WD---FTFALQDVLCAPPA-EAGDLALIFKLLPLLEREQAG 187 (253)
T ss_dssp THHHHHHT---TCSEEEEEESBHHHHHHHHHHHHH-TT-CE---EEEEECCTTTSCCC-CBCSEEEEESCHHHHHHHSTT
T ss_pred cHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHh-cC-CC---ceEEEeecccCCCC-CCcchHHHHHHHHHhhhhchh
Confidence 44444433 679999999999999999999988 47 46 89999998876554 58999999877766542
Q ss_pred ---HHHhhCCCCcEEEE
Q psy14971 78 ---EILAQLKPGGRLVF 91 (156)
Q Consensus 78 ---~l~~~L~pGGrLv~ 91 (156)
.+.+.|+++|.+|.
T Consensus 188 ~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 188 SAMALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHHHHHCBCSEEEEE
T ss_pred hHHHHHHHhcCCCEEEE
Confidence 57889999876665
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-06 Score=65.90 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=53.3
Q ss_pred CEEEEEeCCH--------------HHHHHHHHHHhhh-----------c--CCCCccceEEEEccCCCCCCCC-----CC
Q psy14971 15 ALVLILNHYM--------------KVKSKNQNNKKLN-----------I--KQNRKSFKNVSVKDGSKGHAEE-----GP 62 (156)
Q Consensus 15 g~V~avD~~~--------------~~~~~A~~~l~~~-----------~--g~~n~~~v~~~~gD~~~~~~~~-----~~ 62 (156)
.+++++|.+| ++.+.|+++++.+ + +..+ ++++.||+.+.++.. .+
T Consensus 97 l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~~---l~l~~GDa~~~l~~~~~~~~~~ 173 (257)
T 2qy6_A 97 LHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVT---LDLWFGDINELISQLDDSLNQK 173 (257)
T ss_dssp EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CEE---EEEEESCHHHHGGGSCGGGTTC
T ss_pred eEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCceE---EEEEECcHHHHHhhcccccCCe
Confidence 4899999987 4555777776541 1 1235 889999997755432 37
Q ss_pred cCEEEEccCCC-c--------hHHHHHhhCCCCcEEEEEe
Q psy14971 63 YDIIHLGAACI-E--------VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 63 fD~I~i~~~~~-~--------i~~~l~~~L~pGGrLv~~~ 93 (156)
||+||+++-.+ . +.+.+.++|+|||+|+...
T Consensus 174 ~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys 213 (257)
T 2qy6_A 174 VDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 213 (257)
T ss_dssp EEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred EEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence 99999997432 1 2346789999999999744
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=62.94 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=50.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.|.++...... .++|+++|+|+++++.++++++. .+| ++++++|+.+......+||+|+.+.+..
T Consensus 61 ~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~---~~~---v~vi~gD~l~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 61 KGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL---YNN---IEIIWGDALKVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp TSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH---CSS---EEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred chHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc---CCC---eEEEECchhhCCcccCCccEEEEeCccc
Confidence 47777643333 37999999999999999999875 257 9999999987444446799999876653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.2e-06 Score=69.20 Aligned_cols=66 Identities=14% Similarity=0.011 Sum_probs=51.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--CCCCccceEEEEccCCCCCCC--CCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNI--KQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~ 72 (156)
+|..++.+... .++|+++|+++++++.|++|++. + |++| ++++++|+.+.++. ..+||.||++.+.
T Consensus 104 ~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~-~~~gl~~---i~~i~~Da~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 104 LGIDFIALMSK--ASQGIYIERNDETAVAARHNIPL-LLNEGKD---VNILTGDFKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp SSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHH-HSCTTCE---EEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred chHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHH-hccCCCc---EEEEECcHHHhhhhccCCCceEEEECCCC
Confidence 36666543333 47999999999999999999998 6 7767 99999998764332 2579999998643
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=63.53 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=45.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
|.++..... ..++|+++|+++++++.|+++++. .+.+| ++++.+|+.+.. .+.||+|+++.+..
T Consensus 54 G~lt~~La~--~~~~v~~vDi~~~~~~~a~~~~~~-~~~~~---v~~~~~D~~~~~--~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 54 GNLTVKLLP--LAKKVITIDIDSRMISEVKKRCLY-EGYNN---LEVYEGDAIKTV--FPKFDVCTANIPYK 117 (299)
T ss_dssp STTHHHHTT--TSSEEEEECSCHHHHHHHHHHHHH-TTCCC---EEC----CCSSC--CCCCSEEEEECCGG
T ss_pred cHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHH-cCCCc---eEEEECchhhCC--cccCCEEEEcCCcc
Confidence 555543322 247999999999999999999987 37778 999999987632 24799999987654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.6e-05 Score=67.36 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=60.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCc-------hHH------HH
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIE-------VPK------EI 79 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~-------i~~------~l 79 (156)
.+|+|+|+++++++.|++|++.+ |+.+. +++..+|+.+.... .+.||.|+++.+... +.+ ..
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~a-gv~~~--i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLA-GIGEL--ITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHT-TCGGG--EEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHc-CCCCc--eEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 68999999999999999999995 88654 99999998764322 237999999976431 111 23
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
++.+.|||++++..+.
T Consensus 334 lk~~~~g~~~~ilt~~ 349 (703)
T 3v97_A 334 MKNQFGGWNLSLFSAS 349 (703)
T ss_dssp HHHHCTTCEEEEEESC
T ss_pred HHhhCCCCeEEEEeCC
Confidence 5566799999998763
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=59.84 Aligned_cols=76 Identities=12% Similarity=0.021 Sum_probs=51.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-----------CCCcCEEEEcc
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-----------EGPYDIIHLGA 70 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-----------~~~fD~I~i~~ 70 (156)
|.++..+... .++|+++|+++. . ...+ ++++.+|+.+.... .++||+|++++
T Consensus 37 G~~s~~la~~--~~~V~gvD~~~~---------~---~~~~---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~ 99 (191)
T 3dou_A 37 GGWTQVLNSL--ARKIISIDLQEM---------E---EIAG---VRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDA 99 (191)
T ss_dssp CHHHHHHTTT--CSEEEEEESSCC---------C---CCTT---CEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECC
T ss_pred CHHHHHHHHc--CCcEEEEecccc---------c---cCCC---eEEEEccccCHHHHHHHHHHhhcccCCcceEEecCC
Confidence 5556443322 589999999974 1 2356 99999998763210 03899999998
Q ss_pred CCCc-----------------hHHHHHhhCCCCcEEEEEec
Q psy14971 71 ACIE-----------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 71 ~~~~-----------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+... +.....+.|||||+|++-+-
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 100 MAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 6431 11234689999999998664
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=57.94 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=53.4
Q ss_pred chHHH-HHHhcCCC--------CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEE-EccCCCCC--------CCCCCc
Q psy14971 2 GDLNV-IVGIKGER--------ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVS-VKDGSKGH--------AEEGPY 63 (156)
Q Consensus 2 G~la~-la~l~g~~--------g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~-~gD~~~~~--------~~~~~f 63 (156)
|.++. +++..++. ++|+++|+++.. ...+ ++++ .+|..... ....+|
T Consensus 34 G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~f 98 (196)
T 2nyu_A 34 GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PLEG---ATFLCPADVTDPRTSQRILEVLPGRRA 98 (196)
T ss_dssp CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CCTT---CEEECSCCTTSHHHHHHHHHHSGGGCE
T ss_pred CHHHHHHHHHhccccccccCCCceEEEEechhcc------------cCCC---CeEEEeccCCCHHHHHHHHHhcCCCCC
Confidence 66665 45565653 899999999831 2346 8888 88876421 113479
Q ss_pred CEEEEccCCCc-----------------hHHHHHhhCCCCcEEEEEec
Q psy14971 64 DIIHLGAACIE-----------------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 64 D~I~i~~~~~~-----------------i~~~l~~~L~pGGrLv~~~~ 94 (156)
|+|+++.+... +...+.+.|||||++++...
T Consensus 99 D~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 99 DVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 99999775431 12346789999999999764
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-05 Score=63.29 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=58.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......|..+++++|+ +++++.|++ ..+ ++++.+|..+..+. + |+|++....++.+
T Consensus 215 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~---v~~~~~d~~~~~p~-~--D~v~~~~vlh~~~~~~~~ 280 (368)
T 3reo_A 215 GAVASMIVAKYPSINAINFDL-PHVIQDAPA-------FSG---VEHLGGDMFDGVPK-G--DAIFIKWICHDWSDEHCL 280 (368)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTT---EEEEECCTTTCCCC-C--SEEEEESCGGGBCHHHHH
T ss_pred CHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-------cCC---CEEEecCCCCCCCC-C--CEEEEechhhcCCHHHHH
Confidence 556654333446789999999 888876652 146 99999999875553 3 9999999887554
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||+|++...
T Consensus 281 ~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 281 KLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEEEe
Confidence 346789999999999654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.7e-05 Score=61.88 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=58.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......|..+|+++|+ +++++.|++ ..+ ++++.+|..+..+ .||+|++....++.+
T Consensus 200 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~---v~~~~~d~~~~~p---~~D~v~~~~~lh~~~d~~~~ 265 (352)
T 1fp2_A 200 GTTAKIICETFPKLKCIVFDR-PQVVENLSG-------SNN---LTYVGGDMFTSIP---NADAVLLKYILHNWTDKDCL 265 (352)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------BTT---EEEEECCTTTCCC---CCSEEEEESCGGGSCHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-------CCC---cEEEeccccCCCC---CccEEEeehhhccCCHHHHH
Confidence 555543333346689999999 999887763 136 9999999876443 399999999887654
Q ss_pred ---HHHHhhCCC---CcEEEEEec
Q psy14971 77 ---KEILAQLKP---GGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~p---GGrLv~~~~ 94 (156)
..+.+.||| ||+|++...
T Consensus 266 ~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 266 RILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHhCCCCCCCcEEEEEEe
Confidence 246789999 999998753
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.8e-05 Score=61.39 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=51.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CC--CCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AE--EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~--~~~fD~I~i~~~~~~ 74 (156)
|..+. ++...+ .++|+++|+++++++.|++|++. .| .+ ++++++|..+.. .. ..+||.|+++.+++.
T Consensus 38 G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~-~g-~~---v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 38 GGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE-FS-DR---VSLFKVSYREADFLLKTLGIEKVDGILMDLGVST 110 (301)
T ss_dssp SHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG-GT-TT---EEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh-cC-Cc---EEEEECCHHHHHHHHHhcCCCCCCEEEEcCccch
Confidence 55665 444543 68999999999999999999988 47 67 999999976521 11 147999999988754
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=62.67 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=58.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......+..+++++|+ +++++.|++ ..+ ++++.+|..+..+ .||+|++....++++
T Consensus 221 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~---v~~~~~d~~~~~~---~~D~v~~~~~lh~~~d~~~~ 286 (372)
T 1fp1_D 221 GRNLELIISKYPLIKGINFDL-PQVIENAPP-------LSG---IEHVGGDMFASVP---QGDAMILKAVCHNWSDEKCI 286 (372)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTT---EEEEECCTTTCCC---CEEEEEEESSGGGSCHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-------cCC---CEEEeCCcccCCC---CCCEEEEecccccCCHHHHH
Confidence 555544333456789999999 999877653 146 9999999876433 299999999887654
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|+|||+|++..
T Consensus 287 ~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 287 EFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEE
Confidence 34678999999999874
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.4e-06 Score=64.37 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=50.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCH-------HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC--C--CCcCEEEEc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYM-------KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE--E--GPYDIIHLG 69 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~-------~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~--~--~~fD~I~i~ 69 (156)
.|.+++.+... +++|+++|+++ ++++.|++|++.+ ++.|+ ++++++|+.+..+. . .+||+|+++
T Consensus 94 ~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~-~~~~r--i~~~~~d~~~~l~~~~~~~~~fD~V~~d 168 (258)
T 2r6z_A 94 LGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQ-DTAAR--INLHFGNAAEQMPALVKTQGKPDIVYLD 168 (258)
T ss_dssp TCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHH-HHHTT--EEEEESCHHHHHHHHHHHHCCCSEEEEC
T ss_pred cCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhh-CCccC--eEEEECCHHHHHHhhhccCCCccEEEEC
Confidence 47777654444 37999999999 9999999998774 55343 99999998763321 1 579999998
Q ss_pred cCCC
Q psy14971 70 AACI 73 (156)
Q Consensus 70 ~~~~ 73 (156)
.+.+
T Consensus 169 P~~~ 172 (258)
T 2r6z_A 169 PMYP 172 (258)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.8e-05 Score=61.84 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=58.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++.......|..+++++|+ +++++.|++ .++ ++++.+|..+..+. + |+|++...+++.+
T Consensus 213 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~---v~~~~~D~~~~~p~-~--D~v~~~~vlh~~~d~~~~ 278 (364)
T 3p9c_A 213 GATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------FPG---VTHVGGDMFKEVPS-G--DTILMKWILHDWSDQHCA 278 (364)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTT---EEEEECCTTTCCCC-C--SEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------cCC---eEEEeCCcCCCCCC-C--CEEEehHHhccCCHHHHH
Confidence 555543333346789999999 888876652 146 99999999875553 3 9999999887654
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 279 ~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 279 TLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEEEEe
Confidence 246789999999999654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.78 E-value=6.1e-05 Score=55.41 Aligned_cols=61 Identities=21% Similarity=0.125 Sum_probs=45.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i 75 (156)
|.++..+...+ ..+|+++|+++++++.|++|++ + ++++.+|+.+ ++ .+||.|+++.+....
T Consensus 63 G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~------~---~~~~~~d~~~-~~--~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 63 GILACGSYLLG-AESVTAFDIDPDAIETAKRNCG------G---VNFMVADVSE-IS--GKYDTWIMNPPFGSV 123 (200)
T ss_dssp CHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT------T---SEEEECCGGG-CC--CCEEEEEECCCC---
T ss_pred cHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcC------C---CEEEECcHHH-CC--CCeeEEEECCCchhc
Confidence 66665443333 3689999999999999998864 4 8899999876 33 579999999875433
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=68.64 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=64.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCchHH--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIEVPK-- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~i~~-- 77 (156)
|.++...+..| +.|+|||.++++++.|+.+.... |..+ |+++++++.+.. .+.+.||+|++...++++++
T Consensus 78 G~~~~~la~~g--a~V~giD~~~~~i~~a~~~a~~~-~~~~---~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~ 151 (569)
T 4azs_A 78 GFFSLSLASKG--ATIVGIDFQQENINVCRALAEEN-PDFA---AEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLH 151 (569)
T ss_dssp SHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTS-TTSE---EEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHH
T ss_pred cHHHHHHHhCC--CEEEEECCCHHHHHHHHHHHHhc-CCCc---eEEEECCHHHHhhhccCCCccEEEECcchhcCCCHH
Confidence 67775433444 79999999999999999998773 6557 999999986532 13468999999999988874
Q ss_pred ------HHHhhCCCCcEEEEE
Q psy14971 78 ------EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ------~l~~~L~pGGrLv~~ 92 (156)
.++..|+++|+.++.
T Consensus 152 ~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 152 GIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp CHHHHHHHHHHHHHHSSEEEE
T ss_pred HHHHHHHHHHHhccccceeeE
Confidence 345667777766553
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-06 Score=70.04 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=50.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCc
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGG 87 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGG 87 (156)
+.+|+++|+++++++.|+++ +.... ...+..+++.......++||+|++....++++ ..+.+.|||||
T Consensus 129 g~~v~gvD~s~~~~~~a~~~-----~~~~~-~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG 202 (416)
T 4e2x_A 129 GVRHLGFEPSSGVAAKAREK-----GIRVR-TDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDG 202 (416)
T ss_dssp TCEEEEECCCHHHHHHHHTT-----TCCEE-CSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEE
T ss_pred CCcEEEECCCHHHHHHHHHc-----CCCcc-eeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCe
Confidence 36999999999999999876 11110 01122233221111247899999999988775 35688999999
Q ss_pred EEEEEec
Q psy14971 88 RLVFHKG 94 (156)
Q Consensus 88 rLv~~~~ 94 (156)
+|++...
T Consensus 203 ~l~i~~~ 209 (416)
T 4e2x_A 203 VFVFEDP 209 (416)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9999753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.2e-05 Score=62.70 Aligned_cols=82 Identities=9% Similarity=-0.151 Sum_probs=51.8
Q ss_pred chHHHHHHhcCCCCEEEEEeC----CHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCCCCCCCcCEEEEccCCC---
Q psy14971 2 GDLNVIVGIKGERALVLILNH----YMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGHAEEGPYDIIHLGAACI--- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~----~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~~~~~~fD~I~i~~~~~--- 73 (156)
|.++..+... ++|+++|+ ++.+++.+ ..+. ++.++ ++++.+ |+... + ..+||+|+++++..
T Consensus 94 G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~--~~~~-~~~~~---v~~~~~~D~~~l-~-~~~fD~V~sd~~~~~g~ 162 (305)
T 2p41_A 94 GGWSYYCGGL---KNVREVKGLTKGGPGHEEPI--PMST-YGWNL---VRLQSGVDVFFI-P-PERCDTLLCDIGESSPN 162 (305)
T ss_dssp SHHHHHHHTS---TTEEEEEEECCCSTTSCCCC--CCCS-TTGGG---EEEECSCCTTTS-C-CCCCSEEEECCCCCCSS
T ss_pred CHHHHHHHhc---CCEEEEeccccCchhHHHHH--Hhhh-cCCCC---eEEEeccccccC-C-cCCCCEEEECCccccCc
Confidence 5555433222 68999999 55433211 1122 23356 999999 88753 3 35899999998763
Q ss_pred ch---------HHHHHhhCCCCcEEEEEec
Q psy14971 74 EV---------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i---------~~~l~~~L~pGGrLv~~~~ 94 (156)
.. ...+.+.|||||++++-+-
T Consensus 163 ~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 163 PTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 11 1234588999999998654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=8.3e-05 Score=63.81 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=57.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCC----ccceEEEEccCCCCC-CCCCCcCEEEEccCCCc---------------
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNR----KSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIE--------------- 74 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n----~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~--------------- 74 (156)
..++|+|+++.+++.|+.|+..+ |..+ . +.++++|..... .....||+|+.+.+...
T Consensus 212 ~~i~GiEid~~~~~lA~~nl~l~-gi~~~~~~~--~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~ 288 (541)
T 2ar0_A 212 RAFIGLELVPGTRRLALMNCLLH-DIEGNLDHG--GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTS 288 (541)
T ss_dssp TSEEEEESCHHHHHHHHHHHHTT-TCCCBGGGT--BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHh-CCCcccccc--CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCC
Confidence 47999999999999999999763 6542 1 568999986532 22467999999876431
Q ss_pred -----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-..+.+.|+|||++++++.
T Consensus 289 ~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 289 NKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHHHHHHHHHHHhCCCCEEEEEec
Confidence 12345789999999998864
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0008 Score=57.79 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=58.8
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCC-CC--CCCCcCEEEEccCCCc--------------
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKG-HA--EEGPYDIIHLGAACIE-------------- 74 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~-~~--~~~~fD~I~i~~~~~~-------------- 74 (156)
...++|+|+++.+++.|+.|+..+ |+ ++ +.+.++|.... |+ ....||+|+.+.+...
T Consensus 248 ~~~i~G~Eid~~~~~lA~~Nl~l~-gi~~~~---~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf 323 (542)
T 3lkd_A 248 TVVYFGQELNTSTYNLARMNMILH-GVPIEN---QFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRF 323 (542)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHT-TCCGGG---EEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTT
T ss_pred CceEEEEECcHHHHHHHHHHHHHc-CCCcCc---cceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhh
Confidence 578999999999999999999874 76 46 89999998754 22 2467999999854310
Q ss_pred -----hH----------HHHHhhCC-CCcEEEEEec
Q psy14971 75 -----VP----------KEILAQLK-PGGRLVFHKG 94 (156)
Q Consensus 75 -----i~----------~~l~~~L~-pGGrLv~~~~ 94 (156)
+| ....+.|+ +||++++++.
T Consensus 324 ~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 324 SPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp GGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred hhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 11 23568899 9999988764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=3.4e-05 Score=63.62 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh----cCC---CCccceEEEEccCCCCCC----CCCCcCEEEEccCCC---chH--
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN----IKQ---NRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACI---EVP-- 76 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~----~g~---~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~---~i~-- 76 (156)
+..+|+.+|+|+++++.|++.+... +.. ++ ++++.+|+.+-+. ....||+|+++..-. ..|
T Consensus 227 ~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~r---v~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g 303 (381)
T 3c6k_A 227 KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDC---YQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEE 303 (381)
T ss_dssp CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETT---EEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC---
T ss_pred CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccc---eeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccC
Confidence 4579999999999999999987531 111 23 8999999865332 245799999995321 111
Q ss_pred -----------HHHHhhCCCCcEEEEEec
Q psy14971 77 -----------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 -----------~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|+|||+++.-.+
T Consensus 304 ~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 304 DSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp -CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 245688999999998654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.2e-05 Score=65.10 Aligned_cols=70 Identities=16% Similarity=0.021 Sum_probs=52.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC-----CchHH---HHHhhCCCCc
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC-----IEVPK---EILAQLKPGG 87 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~-----~~i~~---~l~~~L~pGG 87 (156)
+|+|||.++ ++..|++..+.+ +.+++ |++++||..+... ..+.|+|++.-.- +.+|+ ..-+.|||||
T Consensus 387 kVyAVEknp-~A~~a~~~v~~N-~~~dk--VtVI~gd~eev~L-PEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgG 461 (637)
T 4gqb_A 387 KLYAVEKNP-NAVVTLENWQFE-EWGSQ--VTVVSSDMREWVA-PEKADIIVSELLGSFADNELSPECLDGAQHFLKDDG 461 (637)
T ss_dssp EEEEEESCH-HHHHHHHHHHHH-TTGGG--EEEEESCTTTCCC-SSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCH-HHHHHHHHHHhc-cCCCe--EEEEeCcceeccC-CcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCc
Confidence 799999996 788999998886 77665 9999999987432 3679999995421 12343 3357899999
Q ss_pred EEE
Q psy14971 88 RLV 90 (156)
Q Consensus 88 rLv 90 (156)
+++
T Consensus 462 imi 464 (637)
T 4gqb_A 462 VSI 464 (637)
T ss_dssp EEE
T ss_pred EEc
Confidence 863
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0002 Score=57.64 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=57.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+++++|+ +.+++.|++ ..+ ++++.+|..+..+ .||+|++....++.++
T Consensus 205 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~---v~~~~~d~~~~~~---~~D~v~~~~vlh~~~d~~~~ 270 (358)
T 1zg3_A 205 GGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-------NEN---LNFVGGDMFKSIP---SADAVLLKWVLHDWNDEQSL 270 (358)
T ss_dssp SHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-------CSS---EEEEECCTTTCCC---CCSEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHHCCCCeEEEecc-HHHHhhccc-------CCC---cEEEeCccCCCCC---CceEEEEcccccCCCHHHHH
Confidence 555544333356689999999 788866553 246 9999999876333 4999999988876542
Q ss_pred ----HHHhhCCC---CcEEEEEec
Q psy14971 78 ----EILAQLKP---GGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~p---GGrLv~~~~ 94 (156)
.+.+.|+| ||+|++...
T Consensus 271 ~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 271 KILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHhCCCCCCCcEEEEEEe
Confidence 46789999 999998643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00017 Score=56.23 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=45.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-C---CCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-E---EGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~---~~~fD~I~i~~~~ 72 (156)
.|.++...... .++|+++|+|++|++.++++++. .+| ++++++|+.+... + ..+|| |+.+-+.
T Consensus 40 ~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~---~~~---v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 40 RGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ---QKN---ITIYQNDALQFDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp TTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT---CTT---EEEEESCTTTCCGGGSCCSSCEE-EEEECCH
T ss_pred ccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh---CCC---cEEEEcchHhCCHHHhccCCCeE-EEecCCc
Confidence 36666543332 37999999999999999999875 257 9999999987432 2 24687 6665443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=8.9e-05 Score=58.03 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=49.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh-----c-C-C-CCccceEEEEccCCCCCCC-CCCcCEEEEccC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN-----I-K-Q-NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAA 71 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~-----~-g-~-~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~ 71 (156)
.|..++.+...| ++|+++|+++.+++.+++++++. + + + ++ ++++++|+.+.++. ..+||+|+++.+
T Consensus 99 ~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~---i~~~~~D~~~~L~~~~~~fDvV~lDP~ 173 (258)
T 2oyr_A 99 LGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER---LQLIHASSLTALTDITPRPQVVYLDPM 173 (258)
T ss_dssp TCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHH---EEEEESCHHHHSTTCSSCCSEEEECCC
T ss_pred CCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcC---EEEEECCHHHHHHhCcccCCEEEEcCC
Confidence 367776544444 68999999999999888887652 0 1 2 35 99999998653332 236999999987
Q ss_pred CCc
Q psy14971 72 CIE 74 (156)
Q Consensus 72 ~~~ 74 (156)
.+.
T Consensus 174 y~~ 176 (258)
T 2oyr_A 174 FPH 176 (258)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=60.06 Aligned_cols=80 Identities=19% Similarity=0.080 Sum_probs=56.7
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---c---
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---E--- 74 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~--- 74 (156)
|.+++. ++..++..+|+|+|+++++++.| .+ ++++++|..+. .....||+|+++.+.. .
T Consensus 51 G~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~---~~~~~~D~~~~-~~~~~fD~Ii~NPPy~~~~~~~~ 116 (421)
T 2ih2_A 51 GPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PW---AEGILADFLLW-EPGEAFDLILGNPPYGIVGEASK 116 (421)
T ss_dssp CHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TT---EEEEESCGGGC-CCSSCEEEEEECCCCCCBSCTTT
T ss_pred hHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CC---CcEEeCChhhc-CccCCCCEEEECcCccCcccccc
Confidence 555543 44555568999999999988766 24 88999998763 3346899999974321 0
Q ss_pred -----------------------------hHHHHHhhCCCCcEEEEEecc
Q psy14971 75 -----------------------------VPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----------------------------i~~~l~~~L~pGGrLv~~~~~ 95 (156)
+-+.+.+.|+|||++++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 117 YPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred cccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 122456899999999998653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00043 Score=54.41 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=48.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~ 73 (156)
.|.++......+ ++|+++|+|++|++.+++++.. .| ++++++|+.+... +...||.|+.+-+..
T Consensus 57 ~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~----~~---v~vi~~D~l~~~~~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 57 LGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSG----LP---VRLVFQDALLYPWEEVPQGSLLVANLPYH 121 (271)
T ss_dssp TSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTT----SS---EEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred hHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCC----CC---EEEEECChhhCChhhccCccEEEecCccc
Confidence 477775433333 7999999999999999998763 46 9999999976432 223689999887664
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0002 Score=52.99 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=45.8
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----hHHHHHhhCCCCcEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE-----VPKEILAQLKPGGRL 89 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~-----i~~~l~~~L~pGGrL 89 (156)
.+|+++|+++. + ++++.+|+.+.....++||+|++....+. +...+.+.|+|||++
T Consensus 87 ~~v~~~D~s~~----------------~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l 147 (215)
T 2zfu_A 87 NPVHCFDLASL----------------D---PRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLL 147 (215)
T ss_dssp SCEEEEESSCS----------------S---TTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEE
T ss_pred ccEEEEeCCCC----------------C---ceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEE
Confidence 68999999987 2 45778888763333568999999887652 224568899999999
Q ss_pred EEEec
Q psy14971 90 VFHKG 94 (156)
Q Consensus 90 v~~~~ 94 (156)
++...
T Consensus 148 ~i~~~ 152 (215)
T 2zfu_A 148 KVAEV 152 (215)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=61.51 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=57.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCc-------------------
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIE------------------- 74 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~------------------- 74 (156)
..++|+|+++.+++.|+.|+..+ |++.. +.+.+||..... .....||+|+.+.+...
T Consensus 284 ~~i~G~Eid~~~~~lA~~Nl~l~-gi~~~--i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~ 360 (544)
T 3khk_A 284 ISVYGQESNPTTWKLAAMNMVIR-GIDFN--FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTN 360 (544)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHT-TCCCB--CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHh-CCCcc--cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcc
Confidence 58999999999999999999874 76432 555889976532 22468999999865431
Q ss_pred ------hH----------HHHHhhCCCCcEEEEEec
Q psy14971 75 ------VP----------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ------i~----------~~l~~~L~pGGrLv~~~~ 94 (156)
+| ..+.+.|+|||++++++.
T Consensus 361 ~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 361 GEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp --CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 22 245789999999888764
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=4.9e-05 Score=59.93 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=51.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhh-h-cCCCCccceEEE--EccCCCCCCCCCCcCEEEEccCCC--c-
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKL-N-IKQNRKSFKNVS--VKDGSKGHAEEGPYDIIHLGAACI--E- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~-~-~g~~n~~~v~~~--~gD~~~~~~~~~~fD~I~i~~~~~--~- 74 (156)
|.++..+... ++|+++|+++ |+..|+++... . ++ .| ++++ .+|+.+ ++ ..+||.|+++.+.. .
T Consensus 94 G~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~---v~~~~~~~D~~~-l~-~~~fD~Vvsd~~~~~~~~ 163 (276)
T 2wa2_A 94 GSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFG-WN---LITFKSKVDVTK-ME-PFQADTVLCDIGESNPTA 163 (276)
T ss_dssp CHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTT-GG---GEEEECSCCGGG-CC-CCCCSEEEECCCCCCSCH
T ss_pred CHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcC-CC---eEEEeccCcHhh-CC-CCCcCEEEECCCcCCCch
Confidence 5555433222 7999999998 64433322110 0 11 15 8999 899875 33 46899999987611 0
Q ss_pred ---------hHHHHHhhCCCCc--EEEEEec
Q psy14971 75 ---------VPKEILAQLKPGG--RLVFHKG 94 (156)
Q Consensus 75 ---------i~~~l~~~L~pGG--rLv~~~~ 94 (156)
+-+.+.+.||||| ++++-+-
T Consensus 164 ~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 164 AVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred hhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 1233567899999 8888553
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.16 E-value=6e-05 Score=59.04 Aligned_cols=82 Identities=9% Similarity=-0.058 Sum_probs=51.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH---hhhcCCCCccceEEE--EccCCCCCCCCCCcCEEEEccCCC--c
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNK---KLNIKQNRKSFKNVS--VKDGSKGHAEEGPYDIIHLGAACI--E 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l---~~~~g~~n~~~v~~~--~gD~~~~~~~~~~fD~I~i~~~~~--~ 74 (156)
|.++..+... ++|+++|+++ |+..++++. +. .+ .| +.++ .+|+.+ ++ ..+||+|+++.+.. .
T Consensus 86 G~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~-~~-~~---v~~~~~~~D~~~-l~-~~~fD~V~sd~~~~~~~ 154 (265)
T 2oxt_A 86 GGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITES-YG-WN---IVKFKSRVDIHT-LP-VERTDVIMCDVGESSPK 154 (265)
T ss_dssp SHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCB-TT-GG---GEEEECSCCTTT-SC-CCCCSEEEECCCCCCSC
T ss_pred CHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhc-cC-CC---eEEEecccCHhH-CC-CCCCcEEEEeCcccCCc
Confidence 5555433222 7999999998 543332211 11 12 15 8999 899876 33 46899999987611 0
Q ss_pred ----------hHHHHHhhCCCCc--EEEEEec
Q psy14971 75 ----------VPKEILAQLKPGG--RLVFHKG 94 (156)
Q Consensus 75 ----------i~~~l~~~L~pGG--rLv~~~~ 94 (156)
+.+.+.+.|+||| .+++-+-
T Consensus 155 ~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 155 WSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 1233568899999 8988553
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0033 Score=48.16 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=43.3
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEcc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGA 70 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~ 70 (156)
.|.++......+ ++|+++|+++++++.|+++++. . ++ ++++.+|+.+.... ..+| .|+.+.
T Consensus 41 ~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~-~--~~---v~~~~~D~~~~~~~~~~~~-~vv~nl 102 (244)
T 1qam_A 41 KGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD-H--DN---FQVLNKDILQFKFPKNQSY-KIFGNI 102 (244)
T ss_dssp TSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT-C--CS---EEEECCCGGGCCCCSSCCC-EEEEEC
T ss_pred chHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc-C--CC---eEEEEChHHhCCcccCCCe-EEEEeC
Confidence 367775433333 7999999999999999999865 2 57 99999998764222 2345 455554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.00 E-value=7.6e-06 Score=62.86 Aligned_cols=85 Identities=13% Similarity=-0.048 Sum_probs=58.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC-------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI------- 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~------- 73 (156)
|.++..+...+ ++|+++|+++++++.|+++++. .++ ++++.+|+.+.... .++| .|+++.+..
T Consensus 41 G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~---~~~---v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~ 111 (245)
T 1yub_A 41 GHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL---NTR---VTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIK 111 (245)
T ss_dssp SSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT---CSE---EEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHH
T ss_pred CHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc---CCc---eEEEECChhhcCcccCCCc-EEEEeCCccccHHHHH
Confidence 55665433333 7999999999999999988753 246 99999999764322 3568 666654321
Q ss_pred ----------chH----HHHHhhCCCCcEEEEEecc
Q psy14971 74 ----------EVP----KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ----------~i~----~~l~~~L~pGGrLv~~~~~ 95 (156)
.+. +...+.|+|||+|++....
T Consensus 112 ~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~ 147 (245)
T 1yub_A 112 KVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT 147 (245)
T ss_dssp HHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred HHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence 111 4567899999998886654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0046 Score=55.62 Aligned_cols=77 Identities=4% Similarity=-0.061 Sum_probs=51.7
Q ss_pred CEEEEEeCCHHHHHHH--HHHHhhh---cCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCc---h----------
Q psy14971 15 ALVLILNHYMKVKSKN--QNNKKLN---IKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIE---V---------- 75 (156)
Q Consensus 15 g~V~avD~~~~~~~~A--~~~l~~~---~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~---i---------- 75 (156)
..++|+|+++.+++.| +.|+..+ .+..+ ..+...|..... .....||+|+.+-+... .
T Consensus 349 ~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~---~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r 425 (878)
T 3s1s_A 349 RQIWANDIETLFLELLSIRLGLLFPQLVSSNNA---PTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHK 425 (878)
T ss_dssp GGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBC---CEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCc---ceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHH
Confidence 6799999999999999 6666431 13333 455555554321 12467999999887621 0
Q ss_pred ----------------------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ----------------------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ----------------------~~~l~~~L~pGGrLv~~~~ 94 (156)
-....+.|++||++++.+.
T Consensus 426 ~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 426 IIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp HHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 0124678999999999865
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=50.04 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=44.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCC----CCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEE----GPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~----~~fD~I~i~~~~ 72 (156)
+|.++. +.. +...+|+++|++++|++.++++++. . +| ++++++|+.+.. ++. ...|.|+.+.+.
T Consensus 32 ~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~-~--~~---v~~i~~D~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 32 LAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL-G--PK---LTIYQQDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp TTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT-G--GG---EEEECSCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred CcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc-C--Cc---eEEEECchhhCCHHHhhcccCCceEEEECCCC
Confidence 477888 543 3223399999999999999998865 2 46 999999987632 211 134566666554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0037 Score=55.37 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=48.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-----CCCcCEEEEccCC----Cc-hHH---HHHh
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-----EGPYDIIHLGAAC----IE-VPK---EILA 81 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-----~~~fD~I~i~~~~----~~-i~~---~l~~ 81 (156)
.+|+|||.++......+.... + |+.++ |+++.||..+.... ..+.|+|++.-.- .+ .|+ ...+
T Consensus 447 ~kVyAVEknp~A~~~l~~~~~-N-g~~d~--VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r 522 (745)
T 3ua3_A 447 VKLYIVEKNPNAIVTLKYMNV-R-TWKRR--VTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTG 522 (745)
T ss_dssp EEEEEEECCHHHHHHHHHHHH-H-TTTTC--SEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGG
T ss_pred cEEEEEeCChHHHHHHHHHHh-c-CCCCe--EEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHH
Confidence 499999999876655554444 3 66555 99999999763221 3679999996542 12 222 3347
Q ss_pred hCCCCcEEE
Q psy14971 82 QLKPGGRLV 90 (156)
Q Consensus 82 ~L~pGGrLv 90 (156)
.|||||+++
T Consensus 523 ~Lkp~Gi~i 531 (745)
T 3ua3_A 523 FLKPTTISI 531 (745)
T ss_dssp GSCTTCEEE
T ss_pred hCCCCcEEE
Confidence 899999754
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0067 Score=47.67 Aligned_cols=48 Identities=6% Similarity=-0.015 Sum_probs=36.4
Q ss_pred CchHHH-HHHhcCC-CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC
Q psy14971 1 MGDLNV-IVGIKGE-RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG 56 (156)
Q Consensus 1 ~G~la~-la~l~g~-~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~ 56 (156)
.|.++. +++.... .++|+++|++++|++.++++. . .| ++++++|+.+.
T Consensus 53 ~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~----~~---v~~i~~D~~~~ 102 (279)
T 3uzu_A 53 LGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G----EL---LELHAGDALTF 102 (279)
T ss_dssp TSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G----GG---EEEEESCGGGC
T ss_pred cHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C----CC---cEEEECChhcC
Confidence 477775 4444433 356999999999999999984 2 36 99999998764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0067 Score=48.06 Aligned_cols=82 Identities=9% Similarity=-0.021 Sum_probs=59.5
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCc---hH-
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIE---VP- 76 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~---i~- 76 (156)
++-.+++....+++.+|.+++..+.-++|++.. ++ ++++.+|+...+ +...+||.||++-+... +.
T Consensus 104 aLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~---~~---~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~ 177 (283)
T 2oo3_A 104 YFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---KK---VYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKE 177 (283)
T ss_dssp HHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---SC---EEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHH
T ss_pred HHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC---Cc---EEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHH
Confidence 344455555689999999999999999998752 45 999999986532 23346999999998762 22
Q ss_pred --HHHH--hhCCCCcEEEEE
Q psy14971 77 --KEIL--AQLKPGGRLVFH 92 (156)
Q Consensus 77 --~~l~--~~L~pGGrLv~~ 92 (156)
+.+. ..+.++|.+++=
T Consensus 178 vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 178 IPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp HHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHhCccCCCeEEEEE
Confidence 2232 356789999883
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.012 Score=47.82 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=47.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCC---CCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEE---GPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~---~~fD~I~i~~~~~ 73 (156)
|+...+++.+++.|+|+|+|+|+++++.|+ ++ .-++ +++++++..+.. ... +++|.|+.+-+++
T Consensus 70 GHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~R---v~lv~~nF~~l~~~L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 70 GHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPR---FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTT---EEEEESCGGGHHHHHHHTTCTTCEEEEEEECSCC
T ss_pred HHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCc---EEEEeCCHHHHHHHHHhcCCCCcccEEEECCccC
Confidence 455567888899999999999999999994 44 2245 999999875421 111 3699999998765
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.049 Score=46.48 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=43.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-C---CCCCcCEEEEccCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-A---EEGPYDIIHLGAACI 73 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~---~~~~fD~I~i~~~~~ 73 (156)
..++|+|+++.+...|+.|+-.+ |.++ ..+..+|..... . ....||+|+.+.+..
T Consensus 255 ~~i~G~E~~~~~~~la~mNl~lh-g~~~---~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~ 313 (530)
T 3ufb_A 255 SSIFGGEAKSLPYLLVQMNLLLH-GLEY---PRIDPENSLRFPLREMGDKDRVDVILTNPPFG 313 (530)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHH-TCSC---CEEECSCTTCSCGGGCCGGGCBSEEEECCCSS
T ss_pred hhhhhhhccHHHHHHHHHHHHhc-CCcc---ccccccccccCchhhhcccccceEEEecCCCC
Confidence 46999999999999999999875 7766 678899976421 1 235799999998763
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0088 Score=47.41 Aligned_cols=61 Identities=13% Similarity=-0.045 Sum_probs=45.6
Q ss_pred HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCC--CCCcCEEEEccCCCchH
Q psy14971 5 NVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAE--EGPYDIIHLGAACIEVP 76 (156)
Q Consensus 5 a~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~--~~~fD~I~i~~~~~~i~ 76 (156)
..+++. +++|+|+|.|+++++.|++ ++. ++ +++++++..+. +.. ..++|.|+.+-+++.+.
T Consensus 38 ~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~r---v~lv~~~f~~l~~~L~~~g~~~vDgIL~DLGvSS~Q 103 (285)
T 1wg8_A 38 RGILER---GGRVIGLDQDPEAVARAKG-LHL----PG---LTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFH 103 (285)
T ss_dssp HHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TT---EEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHH
T ss_pred HHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CC---EEEEECCcchHHHHHHHcCCCCcCEEEeCCcccccc
Confidence 345554 5899999999999999998 743 46 99999997652 111 24799999988876543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.054 Score=41.62 Aligned_cols=51 Identities=12% Similarity=-0.073 Sum_probs=36.2
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCC
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAAC 72 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~ 72 (156)
.++|+++|+|+++++.++++ .. .| ++++++|+.+... +......|+.+-+.
T Consensus 54 ~~~v~avEid~~~~~~~~~~-~~----~~---v~~i~~D~~~~~~~~~~~~~~vv~NlPy 105 (249)
T 3ftd_A 54 LKKLYVIELDREMVENLKSI-GD----ER---LEVINEDASKFPFCSLGKELKVVGNLPY 105 (249)
T ss_dssp CSEEEEECCCHHHHHHHTTS-CC----TT---EEEECSCTTTCCGGGSCSSEEEEEECCT
T ss_pred CCeEEEEECCHHHHHHHHhc-cC----CC---eEEEEcchhhCChhHccCCcEEEEECch
Confidence 47999999999999999988 32 46 9999999976432 21112255555554
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.059 Score=42.93 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=50.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CC---C---CCCcCEEEEccC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HA---E---EGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~---~---~~~fD~I~i~~~ 71 (156)
|.+++ +|+..| .+|++++.+++.++.++ . +|.+. + +-..|..+. .. . ...+|.||-..+
T Consensus 181 G~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~-lGa~~---~-~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g 249 (352)
T 1e3j_A 181 GLVSVLAAKAYG--AFVVCTARSPRRLEVAK----N-CGADV---T-LVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG 249 (352)
T ss_dssp HHHHHHHHHHTT--CEEEEEESCHHHHHHHH----H-TTCSE---E-EECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred HHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----H-hCCCE---E-EcCcccccHHHHHHHHhccccCCCCCEEEECCC
Confidence 34443 455565 57999999999888776 3 36432 2 211110110 00 0 246999998877
Q ss_pred CCchHHHHHhhCCCCcEEEEE
Q psy14971 72 CIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 72 ~~~i~~~l~~~L~pGGrLv~~ 92 (156)
........++.|+++|+++..
T Consensus 250 ~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 250 NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp CHHHHHHHHHHSCTTCEEEEC
T ss_pred CHHHHHHHHHHHhcCCEEEEE
Confidence 655556778999999999875
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.059 Score=42.84 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=52.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.+++ +|+..| .+|++++.+++..+.+++ +|.+. + + .|.. .+. ..+|.||-..+.....+..+
T Consensus 189 G~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~---v-~--~~~~-~~~--~~~D~vid~~g~~~~~~~~~ 252 (348)
T 3two_A 189 GSMAVKYAVAMG--AEVSVFARNEHKKQDALS-----MGVKH---F-Y--TDPK-QCK--EELDFIISTIPTHYDLKDYL 252 (348)
T ss_dssp HHHHHHHHHHTT--CEEEEECSSSTTHHHHHH-----TTCSE---E-E--SSGG-GCC--SCEEEEEECCCSCCCHHHHH
T ss_pred HHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh-----cCCCe---e-c--CCHH-HHh--cCCCEEEECCCcHHHHHHHH
Confidence 44444 456665 599999999998887753 36543 2 2 3321 122 27999998887775667788
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|++||+++..-
T Consensus 253 ~~l~~~G~iv~~G 265 (348)
T 3two_A 253 KLLTYNGDLALVG 265 (348)
T ss_dssp TTEEEEEEEEECC
T ss_pred HHHhcCCEEEEEC
Confidence 9999999999863
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.082 Score=42.41 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=46.6
Q ss_pred HHHhcCCC-CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-----------
Q psy14971 7 IVGIKGER-ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE----------- 74 (156)
Q Consensus 7 la~l~g~~-g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~----------- 74 (156)
+.++ +|. +.|+++|+.+-. . ..+ .++.||..+. ....+||+|+++.+...
T Consensus 131 Lr~~-~p~g~~VVavDL~~~~---------s---da~----~~IqGD~~~~-~~~~k~DLVISDMAPNtTG~~D~d~~Rs 192 (344)
T 3r24_A 131 LRQW-LPTGTLLVDSDLNDFV---------S---DAD----STLIGDCATV-HTANKWDLIISDMYDPRTKHVTKENDSK 192 (344)
T ss_dssp HHHH-SCTTCEEEEEESSCCB---------C---SSS----EEEESCGGGE-EESSCEEEEEECCCCTTSCSSCSCCCCC
T ss_pred HHHh-CCCCcEEEEeeCcccc---------c---CCC----eEEEcccccc-ccCCCCCEEEecCCCCcCCccccchhHH
Confidence 3444 665 699999998631 1 112 3499997652 33578999999986531
Q ss_pred --hH----HHHHhhCCCCcEEEEEec
Q psy14971 75 --VP----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --i~----~~l~~~L~pGGrLv~~~~ 94 (156)
+- +-..+.|+|||-+++=+-
T Consensus 193 ~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 193 EGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp CTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 11 234678999999999653
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.25 Score=40.53 Aligned_cols=66 Identities=9% Similarity=-0.085 Sum_probs=44.0
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc--h---HHHHHhhCCCCcE
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE--V---PKEILAQLKPGGR 88 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~--i---~~~l~~~L~pGGr 88 (156)
+++|+|||+.+ |.. .+.. ..+ |+++.+|+....+..++||.|+++.+..- + ...|...+..++.
T Consensus 233 g~~V~aVD~~~-l~~----~l~~---~~~---V~~~~~d~~~~~~~~~~~D~vvsDm~~~p~~~~~l~~~wl~~~~~~~a 301 (375)
T 4auk_A 233 NMWVYSVDNGP-MAQ----SLMD---TGQ---VTWLREDGFKFRPTRSNISWMVCDMVEKPAKVAALMAQWLVNGWCRET 301 (375)
T ss_dssp TCEEEEECSSC-CCH----HHHT---TTC---EEEECSCTTTCCCCSSCEEEEEECCSSCHHHHHHHHHHHHHTTSCSEE
T ss_pred CCEEEEEEhhh-cCh----hhcc---CCC---eEEEeCccccccCCCCCcCEEEEcCCCChHHhHHHHHHHHhccccceE
Confidence 58999999763 221 2222 256 99999999876666678999999998752 2 2345555554454
Q ss_pred EE
Q psy14971 89 LV 90 (156)
Q Consensus 89 Lv 90 (156)
++
T Consensus 302 I~ 303 (375)
T 4auk_A 302 IF 303 (375)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.12 Score=41.13 Aligned_cols=83 Identities=10% Similarity=-0.017 Sum_probs=52.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-----cCCCC---CCCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-----DGSKG---HAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-----D~~~~---~~~~~~fD~I~i~~~~ 72 (156)
|.+++ +|+..|. ..|+++|.+++.++.+++. .. . - +..... |..+. ......+|.||-..+.
T Consensus 192 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l-~~--~--~---~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 192 GLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI-CP--E--V---VTHKVERLSAEESAKKIVESFGGIEPAVALECTGV 262 (363)
T ss_dssp HHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH-CT--T--C---EEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCC
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-ch--h--c---ccccccccchHHHHHHHHHHhCCCCCCEEEECCCC
Confidence 44444 4566652 3499999999999999876 32 1 1 222211 10000 0113469999988876
Q ss_pred CchHHHHHhhCCCCcEEEEEe
Q psy14971 73 IEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i~~~l~~~L~pGGrLv~~~ 93 (156)
+......++.|++||+++..-
T Consensus 263 ~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 263 ESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HHHHHHHHHHSCTTCEEEECC
T ss_pred hHHHHHHHHHhcCCCEEEEEc
Confidence 656667789999999999853
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.016 Score=45.16 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=37.4
Q ss_pred eEEEEccCCCCCCC------CCCcCEEEEccCCC-c---hHHHHHhhCCCCcEEEEEec
Q psy14971 46 KNVSVKDGSKGHAE------EGPYDIIHLGAACI-E---VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 46 v~~~~gD~~~~~~~------~~~fD~I~i~~~~~-~---i~~~l~~~L~pGGrLv~~~~ 94 (156)
|+++.|++.+.++. ..+||.+++++..- . .-+.+...|+|||.+++..-
T Consensus 160 i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 160 SVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp EEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred EEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 99999998765432 34699999999862 1 23567899999999999653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.022 Score=45.34 Aligned_cols=83 Identities=7% Similarity=-0.030 Sum_probs=51.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE---ccCCCCCCCCCCcCEEEEccCCCchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV---KDGSKGHAEEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~---gD~~~~~~~~~~fD~I~i~~~~~~i~~ 77 (156)
|.+++ +|+...++.+|++++.+++.++.+++ +|.+. + +-. .|..+.......+|.||-..+.....+
T Consensus 183 G~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~-----lGa~~---v-i~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~ 253 (344)
T 2h6e_A 183 AVYTIQILKALMKNITIVGISRSKKHRDFALE-----LGADY---V-SEMKDAESLINKLTDGLGASIAIDLVGTEETTY 253 (344)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH-----HTCSE---E-ECHHHHHHHHHHHHTTCCEEEEEESSCCHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-----hCCCE---E-eccccchHHHHHhhcCCCccEEEECCCChHHHH
Confidence 34443 46666223689999999998887764 25432 1 111 111001111236999998887765666
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
..++.|++||+++..-
T Consensus 254 ~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 254 NLGKLLAQEGAIILVG 269 (344)
T ss_dssp HHHHHEEEEEEEEECC
T ss_pred HHHHHhhcCCEEEEeC
Confidence 7789999999998743
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.16 Score=39.78 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=49.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--CCCCcCEEEEccCCCchHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--EEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i~~~ 78 (156)
|.+++ +|+..| ++|++++.+++..+.+++ +|.+. .+-..+... .. ..+.+|.+|-..+.+ ..+.
T Consensus 160 G~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~----vi~~~~~~~-~~~~~~~~~d~v~d~~g~~-~~~~ 226 (324)
T 3nx4_A 160 GSTAVALLHKLG--YQVAAVSGRESTHGYLKS-----LGANR----ILSRDEFAE-SRPLEKQLWAGAIDTVGDK-VLAK 226 (324)
T ss_dssp HHHHHHHHHHTT--CCEEEEESCGGGHHHHHH-----HTCSE----EEEGGGSSC-CCSSCCCCEEEEEESSCHH-HHHH
T ss_pred HHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh-----cCCCE----EEecCCHHH-HHhhcCCCccEEEECCCcH-HHHH
Confidence 33443 456665 599999999998888764 35432 122222111 11 124699887665543 5566
Q ss_pred HHhhCCCCcEEEEEe
Q psy14971 79 ILAQLKPGGRLVFHK 93 (156)
Q Consensus 79 l~~~L~pGGrLv~~~ 93 (156)
.++.|+++|+++..-
T Consensus 227 ~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 227 VLAQMNYGGCVAACG 241 (324)
T ss_dssp HHHTEEEEEEEEECC
T ss_pred HHHHHhcCCEEEEEe
Confidence 788999999999854
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.1 Score=41.30 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-----CCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-----EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-----~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..| .+|+++|.+++.++.+++ +|.+. ++..+.. .+. ..+.+|.++.+......
T Consensus 179 G~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~-----~i~~~~~-~~~~~~~~~~g~~d~vid~~g~~~~ 245 (340)
T 3s2e_A 179 GHVAVQYARAMG--LRVAAVDIDDAKLNLARR-----LGAEV-----AVNARDT-DPAAWLQKEIGGAHGVLVTAVSPKA 245 (340)
T ss_dssp HHHHHHHHHHTT--CEEEEEESCHHHHHHHHH-----TTCSE-----EEETTTS-CHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred HHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-----cCCCE-----EEeCCCc-CHHHHHHHhCCCCCEEEEeCCCHHH
Confidence 55554 456665 599999999998887753 35432 1221111 111 11368999988776666
Q ss_pred HHHHHhhCCCCcEEEEE
Q psy14971 76 PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~ 92 (156)
.+..++.|++||+++..
T Consensus 246 ~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 246 FSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHhccCCEEEEe
Confidence 77888999999999875
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.06 Score=43.39 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=50.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc--CCCCCCCCCCcCEEEEccCCCchHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD--GSKGHAEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD--~~~~~~~~~~fD~I~i~~~~~~i~~~ 78 (156)
|.+++ +|+..| ++|++++.+++.++.+++ +|.+. + +-..+ ..+... ..+|.||-..+.....+.
T Consensus 207 G~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~-----lGa~~---v-i~~~~~~~~~~~~--~g~Dvvid~~g~~~~~~~ 273 (369)
T 1uuf_A 207 GHMGIKLAHAMG--AHVVAFTTSEAKREAAKA-----LGADE---V-VNSRNADEMAAHL--KSFDFILNTVAAPHNLDD 273 (369)
T ss_dssp HHHHHHHHHHTT--CEEEEEESSGGGHHHHHH-----HTCSE---E-EETTCHHHHHTTT--TCEEEEEECCSSCCCHHH
T ss_pred HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-----cCCcE---E-eccccHHHHHHhh--cCCCEEEECCCCHHHHHH
Confidence 44444 455555 579999999998888764 25432 1 11111 001111 469999988877666667
Q ss_pred HHhhCCCCcEEEEE
Q psy14971 79 ILAQLKPGGRLVFH 92 (156)
Q Consensus 79 l~~~L~pGGrLv~~ 92 (156)
.++.|+++|+++..
T Consensus 274 ~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 274 FTTLLKRDGTMTLV 287 (369)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHHHhccCCEEEEe
Confidence 78999999999874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.60 E-value=0.32 Score=37.98 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=28.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN 37 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~ 37 (156)
|-+++.|...| .+++++|+++++++.|++|++..
T Consensus 247 Gt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 247 GTTLIAAARWG--RRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp THHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHh
Confidence 55666666665 69999999999999999999873
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.045 Score=44.00 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=50.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc-CCC---CCCCCCCcCEEEEccCCCchH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD-GSK---GHAEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD-~~~---~~~~~~~fD~I~i~~~~~~i~ 76 (156)
|.+++ +|+..+ +.+|++++.+++.++.+++ +|.+. + +-..+ ..+ .. ....+|.||-..+.....
T Consensus 185 G~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~-----lGad~---v-i~~~~~~~~~v~~~-~~~g~Dvvid~~g~~~~~ 253 (363)
T 4dvj_A 185 GSIAVQIARQRT-DLTVIATASRPETQEWVKS-----LGAHH---V-IDHSKPLAAEVAAL-GLGAPAFVFSTTHTDKHA 253 (363)
T ss_dssp HHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH-----TTCSE---E-ECTTSCHHHHHHTT-CSCCEEEEEECSCHHHHH
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH-----cCCCE---E-EeCCCCHHHHHHHh-cCCCceEEEECCCchhhH
Confidence 44444 344433 3799999999998887753 36432 1 11111 000 01 234699998876655566
Q ss_pred HHHHhhCCCCcEEEEE
Q psy14971 77 KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~ 92 (156)
+..++.|++||+++..
T Consensus 254 ~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 254 AEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHHHHSCTTCEEEEC
T ss_pred HHHHHHhcCCCEEEEE
Confidence 7788999999999986
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.30 E-value=0.31 Score=38.91 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=51.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCC--CCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHA--EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~--~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..|. .+|+++|.+++.++.+++ +|.+. ++..+..+ ... ..+.+|.||-..+....
T Consensus 203 G~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~-----lGa~~-----vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~ 271 (371)
T 1f8f_A 203 GLSALLAAKVCGA-SIIIAVDIVESRLELAKQ-----LGATH-----VINSKTQDPVAAIKEITDGGVNFALESTGSPEI 271 (371)
T ss_dssp HHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH-----HTCSE-----EEETTTSCHHHHHHHHTTSCEEEEEECSCCHHH
T ss_pred HHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH-----cCCCE-----EecCCccCHHHHHHHhcCCCCcEEEECCCCHHH
Confidence 34443 4566652 379999999998888763 35432 22211111 000 11369999988776566
Q ss_pred HHHHHhhCCCCcEEEEEe
Q psy14971 76 PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~ 93 (156)
.+..++.|++||+++..-
T Consensus 272 ~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 272 LKQGVDALGILGKIAVVG 289 (371)
T ss_dssp HHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHhcCCEEEEeC
Confidence 667889999999998853
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.33 Score=38.94 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=52.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|+++|.+++.++.|+ + +|.+. + +-..+..+.+. ..+.+|.||-..+.+.
T Consensus 206 G~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~----~-lGa~~---v-i~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~ 275 (378)
T 3uko_A 206 GLAVAEGAKTAGA-SRIIGIDIDSKKYETAK----K-FGVNE---F-VNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVS 275 (378)
T ss_dssp HHHHHHHHHHHTC-SCEEEECSCTTHHHHHH----T-TTCCE---E-ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred HHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----H-cCCcE---E-EccccCchhHHHHHHHhcCCCCCEEEECCCCHH
Confidence 44454 4566653 48999999999888775 3 46532 1 11111011110 1237999998888766
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
..+..++.|++| |+++..-
T Consensus 276 ~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 276 VMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHHHHhhccCCEEEEEc
Confidence 667788999997 9998854
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.20 E-value=0.066 Score=43.23 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=51.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc------CCCC---CCCCCCcCEEEEccC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD------GSKG---HAEEGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD------~~~~---~~~~~~fD~I~i~~~ 71 (156)
|.+++ +|+..|. .+|++++.+++.++.++ + +|.+. ++.-+ ..+. ......+|.||-..+
T Consensus 208 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~----~-lGa~~-----vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g 276 (380)
T 1vj0_A 208 GLFGVVIARSLGA-ENVIVIAGSPNRLKLAE----E-IGADL-----TLNRRETSVEERRKAIMDITHGRGADFILEATG 276 (380)
T ss_dssp HHHHHHHHHHTTB-SEEEEEESCHHHHHHHH----H-TTCSE-----EEETTTSCHHHHHHHHHHHTTTSCEEEEEECSS
T ss_pred HHHHHHHHHHcCC-ceEEEEcCCHHHHHHHH----H-cCCcE-----EEeccccCcchHHHHHHHHhCCCCCcEEEECCC
Confidence 33443 4555541 49999999999888776 3 36432 22211 0000 011236999998887
Q ss_pred CCchHHHHHhhCCCCcEEEEEe
Q psy14971 72 CIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 72 ~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
........++.|++||+++..-
T Consensus 277 ~~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 277 DSRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CTTHHHHHHHHEEEEEEEEECC
T ss_pred CHHHHHHHHHHHhcCCEEEEEe
Confidence 7666677789999999998753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.14 Score=40.88 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=50.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-----cCCCCCCC--CCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-----DGSKGHAE--EGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-----D~~~~~~~--~~~fD~I~i~~~~~ 73 (156)
|.+++ +|+..|. .+|+++|.+++.++.++ + +|.+. + +-.. |..+.... ...+|.||-..+..
T Consensus 184 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~----~-lGa~~---v-i~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~ 253 (356)
T 1pl8_A 184 GMVTLLVAKAMGA-AQVVVTDLSATRLSKAK----E-IGADL---V-LQISKESPQEIARKVEGQLGCKPEVTIECTGAE 253 (356)
T ss_dssp HHHHHHHHHHTTC-SEEEEEESCHHHHHHHH----H-TTCSE---E-EECSSCCHHHHHHHHHHHHTSCCSEEEECSCCH
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHH----H-hCCCE---E-EcCcccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence 44444 4555552 38999999999888775 3 36432 2 1111 10000000 14699999887766
Q ss_pred chHHHHHhhCCCCcEEEEE
Q psy14971 74 EVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 74 ~i~~~l~~~L~pGGrLv~~ 92 (156)
......++.|++||+++..
T Consensus 254 ~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 254 ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 5556778999999999875
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.37 Score=38.44 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=50.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC------CCCCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG------HAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~------~~~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..| ++|++++.+++.++.+++ +|.+. ++..+..+. ......+|.||-..+ ..
T Consensus 202 G~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~-----vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~~ 268 (363)
T 3uog_A 202 ALFGLQIAKATG--AEVIVTSSSREKLDRAFA-----LGADH-----GINRLEEDWVERVYALTGDRGADHILEIAG-GA 268 (363)
T ss_dssp HHHHHHHHHHTT--CEEEEEESCHHHHHHHHH-----HTCSE-----EEETTTSCHHHHHHHHHTTCCEEEEEEETT-SS
T ss_pred HHHHHHHHHHcC--CEEEEEecCchhHHHHHH-----cCCCE-----EEcCCcccHHHHHHHHhCCCCceEEEECCC-hH
Confidence 44444 455565 699999999998887653 36532 222221110 011236999998877 45
Q ss_pred hHHHHHhhCCCCcEEEEEec
Q psy14971 75 VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~~ 94 (156)
.....++.|++||+++..-.
T Consensus 269 ~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 269 GLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp CHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHhhcCCEEEEEec
Confidence 55667889999999998643
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.045 Score=43.54 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=48.1
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..| ++|++++.+++.++.+++ +|.+. + +..+ +.+. ....+|.||-+.+.....+..+
T Consensus 170 la~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~---v--i~~~--~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~ 235 (346)
T 3fbg_A 170 IAKAYG--LRVITTASRNETIEWTKK-----MGADI---V--LNHK--ESLLNQFKTQGIELVDYVFCTFNTDMYYDDMI 235 (346)
T ss_dssp HHHHTT--CEEEEECCSHHHHHHHHH-----HTCSE---E--ECTT--SCHHHHHHHHTCCCEEEEEESSCHHHHHHHHH
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHh-----cCCcE---E--EECC--ccHHHHHHHhCCCCccEEEECCCchHHHHHHH
Confidence 455555 699999999998887775 25432 1 1111 1110 1246999998776555556778
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++...
T Consensus 236 ~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 236 QLVKPRGHIATIV 248 (346)
T ss_dssp HHEEEEEEEEESS
T ss_pred HHhccCCEEEEEC
Confidence 9999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.34 E-value=0.027 Score=44.90 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=52.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---C---CCCCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---G---HAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~---~~~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|+++|.+++.++.+++ +|.+. ++..+..+ . ......+|.||-..+.+.
T Consensus 179 G~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~-----lGa~~-----vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~ 247 (352)
T 3fpc_A 179 GLMSVAGANHLGA-GRIFAVGSRKHCCDIALE-----YGATD-----IINYKNGDIVEQILKATDGKGVDKVVIAGGDVH 247 (352)
T ss_dssp HHHHHHHHHTTTC-SSEEEECCCHHHHHHHHH-----HTCCE-----EECGGGSCHHHHHHHHTTTCCEEEEEECSSCTT
T ss_pred HHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH-----hCCce-----EEcCCCcCHHHHHHHHcCCCCCCEEEECCCChH
Confidence 44454 3555552 489999999998887764 35432 12111111 0 111236999998887767
Q ss_pred hHHHHHhhCCCCcEEEEEe
Q psy14971 75 VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~ 93 (156)
..+..++.|++||+++..-
T Consensus 248 ~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 248 TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp HHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEec
Confidence 7778889999999999854
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.15 Score=41.66 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=34.3
Q ss_pred EEEEccCCCCCCCCCCcCEEEEccCCCch---HHH-----------------------------------------HHhh
Q psy14971 47 NVSVKDGSKGHAEEGPYDIIHLGAACIEV---PKE-----------------------------------------ILAQ 82 (156)
Q Consensus 47 ~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---~~~-----------------------------------------l~~~ 82 (156)
.-+-|.-...+.+..+||.|+++.+.+.+ |+. ..+.
T Consensus 135 ~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~e 214 (374)
T 3b5i_A 135 AGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAE 214 (374)
T ss_dssp EEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444456789999999998753 321 2678
Q ss_pred CCCCcEEEEEeccC
Q psy14971 83 LKPGGRLVFHKGLH 96 (156)
Q Consensus 83 L~pGGrLv~~~~~~ 96 (156)
|+|||+||+.+...
T Consensus 215 L~pGG~mvl~~~gr 228 (374)
T 3b5i_A 215 VKRGGAMFLVCLGR 228 (374)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred hCCCCEEEEEEecC
Confidence 99999999987643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.18 Score=39.33 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=45.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
|.+++ +|+..| .+|++++ +++..+.+++ +|.+. ++ -| .+.. ...+|.||-..+.... ...+
T Consensus 155 G~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~-----lGa~~-----v~-~d-~~~v--~~g~Dvv~d~~g~~~~-~~~~ 216 (315)
T 3goh_A 155 NNLLTQMLNNAG--YVVDLVS-ASLSQALAAK-----RGVRH-----LY-RE-PSQV--TQKYFAIFDAVNSQNA-AALV 216 (315)
T ss_dssp HHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH-----HTEEE-----EE-SS-GGGC--CSCEEEEECC--------TTG
T ss_pred HHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH-----cCCCE-----EE-cC-HHHh--CCCccEEEECCCchhH-HHHH
Confidence 44444 466666 5999999 8888777753 35432 22 24 2222 4579999876665544 5567
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++..-
T Consensus 217 ~~l~~~G~~v~~g 229 (315)
T 3goh_A 217 PSLKANGHIICIQ 229 (315)
T ss_dssp GGEEEEEEEEEEC
T ss_pred HHhcCCCEEEEEe
Confidence 8999999999873
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.067 Score=42.42 Aligned_cols=81 Identities=6% Similarity=0.006 Sum_probs=52.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--CC---CCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--KG---HAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~~---~~~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..| ..+|+++|.+++.++.+++ +|.+. ++..+.. +. ......+|.||-..+.+..
T Consensus 184 G~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~-----lGa~~-----~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~ 252 (345)
T 3jv7_A 184 GHVGIQILRAVS-AARVIAVDLDDDRLALARE-----VGADA-----AVKSGAGAADAIRELTGGQGATAVFDFVGAQST 252 (345)
T ss_dssp HHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH-----TTCSE-----EEECSTTHHHHHHHHHGGGCEEEEEESSCCHHH
T ss_pred HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH-----cCCCE-----EEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHH
Confidence 44444 455664 3799999999998887753 36532 2221110 00 0112369999988877656
Q ss_pred HHHHHhhCCCCcEEEEEe
Q psy14971 76 PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~ 93 (156)
.+..++.|++||+++..-
T Consensus 253 ~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 253 IDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp HHHHHHHEEEEEEEEECS
T ss_pred HHHHHHHHhcCCEEEEEC
Confidence 677889999999999853
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=90.60 E-value=0.05 Score=43.52 Aligned_cols=81 Identities=15% Similarity=0.204 Sum_probs=50.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCC--CchHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAAC--IEVPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~--~~i~~ 77 (156)
|.+++ +|+..| .+|++++.+++.++.+++ +|.+. + +-..+..+.... .+.+|.||-..+. .....
T Consensus 192 G~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~---v-~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 260 (360)
T 1piw_A 192 GSMGTLISKAMG--AETYVISRSSRKREDAMK-----MGADH---Y-IATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 260 (360)
T ss_dssp HHHHHHHHHHHT--CEEEEEESSSTTHHHHHH-----HTCSE---E-EEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTT
T ss_pred HHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH-----cCCCE---E-EcCcCchHHHHHhhcCCCEEEECCCCCcHHHHH
Confidence 34443 456665 589999999998887764 25432 2 211111010000 1469999988776 45555
Q ss_pred HHHhhCCCCcEEEEEe
Q psy14971 78 EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~ 93 (156)
..++.|++||+++..-
T Consensus 261 ~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 261 IMPKAMKVGGRIVSIS 276 (360)
T ss_dssp TGGGGEEEEEEEEECC
T ss_pred HHHHHhcCCCEEEEec
Confidence 6788999999998743
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.41 Score=37.79 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-CCCC-----CCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAE-----EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~-----~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..| .+|++++.+++.++.+++ +|.+. + + |..+ .+.+ .+.+|.++-..+...
T Consensus 177 G~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~---~--~--d~~~~~~~~~~~~~~~~~d~vid~~g~~~ 242 (339)
T 1rjw_A 177 GHVAVQYAKAMG--LNVVAVDIGDEKLELAKE-----LGADL---V--V--NPLKEDAAKFMKEKVGGVHAAVVTAVSKP 242 (339)
T ss_dssp HHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-----TTCSE---E--E--CTTTSCHHHHHHHHHSSEEEEEESSCCHH
T ss_pred HHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-----CCCCE---E--e--cCCCccHHHHHHHHhCCCCEEEECCCCHH
Confidence 44444 355555 699999999998887753 35432 1 1 2211 1100 046999998877655
Q ss_pred hHHHHHhhCCCCcEEEEEe
Q psy14971 75 VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~ 93 (156)
..+..++.|+++|+++..-
T Consensus 243 ~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 243 AFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp HHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHhhcCCEEEEec
Confidence 6667789999999998753
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.71 Score=37.28 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=48.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC----C---CCCCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG----H---AEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~----~---~~~~~fD~I~i~~~~~ 73 (156)
|.+++ +|+..|. .+|+++|.+++.++.++ + +|. .++.-+..+. . .....||+||-..+..
T Consensus 198 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~----~-lGa------~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~ 265 (398)
T 2dph_A 198 GRCAAAGARLLGA-ACVIVGDQNPERLKLLS----D-AGF------ETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFE 265 (398)
T ss_dssp HHHHHHHHHHHTC-SEEEEEESCHHHHHHHH----T-TTC------EEEETTSSSCHHHHHHHHHSSSCEEEEEECSCTT
T ss_pred HHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH----H-cCC------cEEcCCCcchHHHHHHHHhCCCCCCEEEECCCCc
Confidence 44444 4556652 49999999999887765 3 353 1222111111 0 1123699999877654
Q ss_pred c--------------hHHHHHhhCCCCcEEEEE
Q psy14971 74 E--------------VPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 74 ~--------------i~~~l~~~L~pGGrLv~~ 92 (156)
. ..+..++.|++||++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 266 AHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp CBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred cccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 3 345678899999999874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.16 Score=40.63 Aligned_cols=82 Identities=18% Similarity=0.047 Sum_probs=51.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|+++|.+++.++.++ + +|.+. + +-..+..+.+. ..+.+|.||-..+...
T Consensus 204 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~----~-lGa~~---v-i~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~ 273 (373)
T 1p0f_A 204 GFSAIVGCKAAGA-SRIIGVGTHKDKFPKAI----E-LGATE---C-LNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE 273 (373)
T ss_dssp HHHHHHHHHHHTC-SEEEEECSCGGGHHHHH----H-TTCSE---E-ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred HHHHHHHHHHcCC-CeEEEECCCHHHHHHHH----H-cCCcE---E-EecccccchHHHHHHHHhCCCCCEEEECCCCHH
Confidence 34443 4566652 38999999999888776 3 36432 1 11111001110 1137999998877655
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
.....++.|+++ |+++..-
T Consensus 274 ~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 274 TMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEEc
Confidence 666778999999 9998753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.02 E-value=1 Score=35.41 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-CC-------CCCCCcCEEEEccCCCchHHHH
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GH-------AEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~-------~~~~~fD~I~i~~~~~~i~~~l 79 (156)
++..| .+|++++.+++.++.+++ +|.+. + + |..+ .+ .....+|.++-+.+ .......
T Consensus 187 a~~~G--~~Vi~~~~~~~~~~~~~~-----~ga~~---~--~--d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~~~~~~ 251 (343)
T 2eih_A 187 AKLFG--ARVIATAGSEDKLRRAKA-----LGADE---T--V--NYTHPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGV 251 (343)
T ss_dssp HHHTT--CEEEEEESSHHHHHHHHH-----HTCSE---E--E--ETTSTTHHHHHHHHTTTTCEEEEEESSC-SSSHHHH
T ss_pred HHHCC--CEEEEEeCCHHHHHHHHh-----cCCCE---E--E--cCCcccHHHHHHHHhCCCCceEEEECCC-HHHHHHH
Confidence 44444 699999999998887753 25322 2 2 2111 00 11246999999888 6666778
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.|+++|+++..-
T Consensus 252 ~~~l~~~G~~v~~g 265 (343)
T 2eih_A 252 IKATANGGRIAIAG 265 (343)
T ss_dssp HHHEEEEEEEEESS
T ss_pred HHhhccCCEEEEEe
Confidence 89999999998753
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.085 Score=42.15 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=49.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~~~l 79 (156)
|.+++ +|+..| ++|++++.+++.++.+++ + +|.+. + +..+-.+... ..+.+|.||-..+.....+..
T Consensus 193 G~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~---~-lGa~~---v--i~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~ 261 (357)
T 2cf5_A 193 GHMGVKIAKAMG--HHVTVISSSNKKREEALQ---D-LGADD---Y--VIGSDQAKMSELADSLDYVIDTVPVHHALEPY 261 (357)
T ss_dssp HHHHHHHHHHHT--CEEEEEESSTTHHHHHHT---T-SCCSC---E--EETTCHHHHHHSTTTEEEEEECCCSCCCSHHH
T ss_pred HHHHHHHHHHCC--CeEEEEeCChHHHHHHHH---H-cCCce---e--eccccHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 33443 456666 689999999987776653 3 46543 2 2111000000 113699999887766555567
Q ss_pred HhhCCCCcEEEEE
Q psy14971 80 LAQLKPGGRLVFH 92 (156)
Q Consensus 80 ~~~L~pGGrLv~~ 92 (156)
++.|++||+++..
T Consensus 262 ~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 262 LSLLKLDGKLILM 274 (357)
T ss_dssp HTTEEEEEEEEEC
T ss_pred HHHhccCCEEEEe
Confidence 8899999999875
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=0.82 Score=36.40 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=51.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|++++.+++.++.+++ +|.+. + +-..+..+.+. ..+.+|.||-..+...
T Consensus 203 G~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~-----lGa~~---v-i~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~ 272 (373)
T 2fzw_A 203 GLAVIMGCKVAGA-SRIIGVDINKDKFARAKE-----FGATE---C-INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK 272 (373)
T ss_dssp HHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH-----HTCSE---E-ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred HHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-----cCCce---E-eccccccccHHHHHHHHhCCCCCEEEECCCcHH
Confidence 34444 4556652 389999999998888763 35432 1 11111001110 0136999998877655
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
.....++.|+++ |+++..-
T Consensus 273 ~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 273 VMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHHHhhccCCcEEEEEe
Confidence 566778999999 9998753
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.76 Score=36.80 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=51.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE--ccCCC---C---CCCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV--KDGSK---G---HAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~--gD~~~---~---~~~~~~fD~I~i~~~~ 72 (156)
|.+++ +|+..|. .+|++++.+++..+.+++ +|.+. + +-. .|..+ . .. .+.+|.||-..+.
T Consensus 195 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~-----lGa~~---v-i~~~~~~~~~~i~~~~~~~-~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 195 GLLTVQLARLAGA-TTVILSTRQATKRRLAEE-----VGATA---T-VDPSAGDVVEAIAGPVGLV-PGGVDVVIECAGV 263 (370)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH-----HTCSE---E-ECTTSSCHHHHHHSTTSSS-TTCEEEEEECSCC
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-----cCCCE---E-ECCCCcCHHHHHHhhhhcc-CCCCCEEEECCCC
Confidence 44444 4566652 499999999998887764 25432 1 110 11000 0 11 2379999987776
Q ss_pred CchHHHHHhhCCCCcEEEEEe
Q psy14971 73 IEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i~~~l~~~L~pGGrLv~~~ 93 (156)
....+..++.|++||+++..-
T Consensus 264 ~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 264 AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp HHHHHHHHHHEEEEEEEEECS
T ss_pred HHHHHHHHHHhccCCEEEEEe
Confidence 666677889999999998853
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=1.4 Score=33.02 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=54.7
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCCCc-----
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~~~----- 74 (156)
+...+.+|+.+++++...+.+++..+. ++-.+ +.++.+|..+... ..++.|.++.+++...
T Consensus 29 l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~ 104 (266)
T 3oig_A 29 LHEAGARLIFTYAGERLEKSVHELAGT-LDRND---SIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELV 104 (266)
T ss_dssp HHHTTCEEEEEESSGGGHHHHHHHHHT-SSSCC---CEEEECCCSSSHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGS
T ss_pred HHHCCCEEEEecCchHHHHHHHHHHHh-cCCCC---ceEEeCCCCCHHHHHHHHHHHHHHhCCeeEEEEccccccccccc
Confidence 444567999999998777777766665 35445 8999999875311 0147899999887532
Q ss_pred -----hH-------------------HHHHhhCCCCcEEEEEec
Q psy14971 75 -----VP-------------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -----i~-------------------~~l~~~L~pGGrLv~~~~ 94 (156)
.. ..+.+.++++|++|....
T Consensus 105 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 105 GEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp SCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred cchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 10 123566778999988653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.64 E-value=0.11 Score=40.55 Aligned_cols=50 Identities=26% Similarity=0.360 Sum_probs=36.3
Q ss_pred eEEEEccCCCCCC--CCCCcCEEEEccCCCch--------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 46 KNVSVKDGSKGHA--EEGPYDIIHLGAACIEV--------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 46 v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~i--------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
+++++||+.+... ..++||+|+++-+.... -..+.+.|||||.|++.++.
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7899999876332 24689999999875310 12346889999999998763
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=0.66 Score=36.96 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=49.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCH---HHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-----CCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYM---KVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-----EGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~---~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-----~~~fD~I~i~~~~ 72 (156)
|.+++ +++..| ++|++++.++ +.++.++ . +|.+. + | .+.+.+ ...+|.||-..+.
T Consensus 193 G~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~----~-~ga~~---v-----~-~~~~~~~~~~~~~~~d~vid~~g~ 256 (366)
T 2cdc_A 193 GVLFTLLFRTYG--LEVWMANRREPTEVEQTVIE----E-TKTNY---Y-----N-SSNGYDKLKDSVGKFDVIIDATGA 256 (366)
T ss_dssp HHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHH----H-HTCEE---E-----E-CTTCSHHHHHHHCCEEEEEECCCC
T ss_pred HHHHHHHHHhCC--CEEEEEeCCccchHHHHHHH----H-hCCce---e-----c-hHHHHHHHHHhCCCCCEEEECCCC
Confidence 33443 455555 5999999998 7666654 3 35432 2 2 111111 1469999998887
Q ss_pred CchH-HHHHhhCCCCcEEEEEe
Q psy14971 73 IEVP-KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i~-~~l~~~L~pGGrLv~~~ 93 (156)
.... +...+.|+++|+++..-
T Consensus 257 ~~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 257 DVNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp CTHHHHHHGGGEEEEEEEEECS
T ss_pred hHHHHHHHHHHHhcCCEEEEEe
Confidence 6666 77889999999998753
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=89.44 E-value=0.34 Score=39.38 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=52.3
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEcc---CCCCCCCCCCcCEEEEccCCCch---HHH-------
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKD---GSKGHAEEGPYDIIHLGAACIEV---PKE------- 78 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD---~~~~~~~~~~fD~I~i~~~~~~i---~~~------- 78 (156)
|.-.|+.-|.-...-+..-+++.. +... + ..++.|. ....+....++|.|+++.+++.+ |+.
T Consensus 90 pe~~v~~nDLp~NDFntlF~~L~~-~~~~~~---~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~ 165 (359)
T 1m6e_X 90 PEYQIFLNDLPGNDFNAIFRSLPI-ENDVDG---VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGN 165 (359)
T ss_dssp CEEEEEEEECTTSCHHHHHTTTTT-SCSCTT---CEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTT
T ss_pred CceEEEecCCCchHHHHHHHhcch-hcccCC---CEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCc
Confidence 456788888877777777666654 2211 2 3444443 34344456789999999987642 311
Q ss_pred -----------------------------HHhhCCCCcEEEEEeccC
Q psy14971 79 -----------------------------ILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 79 -----------------------------l~~~L~pGGrLv~~~~~~ 96 (156)
-.+-|+|||+||+.+...
T Consensus 166 i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 166 IYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp TSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred eEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 167899999999987643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.68 Score=36.31 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=47.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC------CCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG------HAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~------~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+++..| ++|++++.+++.++.+++ +|.+. ++..+..+. ......+|.+|-+.+. ...+..+
T Consensus 168 ~a~~~G--a~Vi~~~~~~~~~~~~~~-----~ga~~-----~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~~~~~~ 234 (334)
T 3qwb_A 168 LLKMKG--AHTIAVASTDEKLKIAKE-----YGAEY-----LINASKEDILRQVLKFTNGKGVDASFDSVGK-DTFEISL 234 (334)
T ss_dssp HHHHTT--CEEEEEESSHHHHHHHHH-----TTCSE-----EEETTTSCHHHHHHHHTTTSCEEEEEECCGG-GGHHHHH
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHHH-----cCCcE-----EEeCCCchHHHHHHHHhCCCCceEEEECCCh-HHHHHHH
Confidence 345555 699999999998877653 35322 222111110 0112469999988775 5556778
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|++||+++..-
T Consensus 235 ~~l~~~G~iv~~G 247 (334)
T 3qwb_A 235 AALKRKGVFVSFG 247 (334)
T ss_dssp HHEEEEEEEEECC
T ss_pred HHhccCCEEEEEc
Confidence 8999999999853
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.76 E-value=0.27 Score=39.36 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=51.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|+++|.+++.++.++ + +|.+. + +-..+..+.+. ..+.+|.||-..+...
T Consensus 205 G~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~----~-lGa~~---v-i~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 274 (374)
T 1cdo_A 205 GLAAVMGCHSAGA-KRIIAVDLNPDKFEKAK----V-FGATD---F-VNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG 274 (374)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCGGGHHHHH----H-TTCCE---E-ECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHH
T ss_pred HHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH----H-hCCce---E-EeccccchhHHHHHHHHhCCCCCEEEECCCCHH
Confidence 34444 4555552 38999999999888776 3 35432 2 11111001111 0136999998877655
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
.....++.|++| |+++..-
T Consensus 275 ~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 275 VMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHHHHhhcCCcEEEEEc
Confidence 666778999999 9998753
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=0.19 Score=40.29 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=47.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchHHHHHhhCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVPKEILAQLKP 85 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~~~l~~~L~p 85 (156)
+|+..| .+|++++.+++..+.+++ . +|.+. ++..+-.+... ..+.+|.||-..+........++.|++
T Consensus 206 ~a~~~G--a~Vi~~~~~~~~~~~~~~---~-lGa~~-----v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~ 274 (366)
T 1yqd_A 206 FAKAFG--SKVTVISTSPSKKEEALK---N-FGADS-----FLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKS 274 (366)
T ss_dssp HHHHTT--CEEEEEESCGGGHHHHHH---T-SCCSE-----EEETTCHHHHHHTTTCEEEEEECCSSCCCSHHHHHHEEE
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHHH---h-cCCce-----EEeccCHHHHHHhhCCCCEEEECCCcHHHHHHHHHHHhc
Confidence 455555 699999999987776653 3 35432 12111000000 013699999887766544567789999
Q ss_pred CcEEEEEe
Q psy14971 86 GGRLVFHK 93 (156)
Q Consensus 86 GGrLv~~~ 93 (156)
+|+++..-
T Consensus 275 ~G~iv~~g 282 (366)
T 1yqd_A 275 HGKLILVG 282 (366)
T ss_dssp EEEEEECC
T ss_pred CCEEEEEc
Confidence 99988753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.43 E-value=1.5 Score=34.31 Aligned_cols=83 Identities=12% Similarity=0.008 Sum_probs=52.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--C---CCCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--K---GHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~---~~~~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|++.|. ..|+++|.+++.++.|+ + +|.+. .+-..+.. + ...+...+|.|+-..+....
T Consensus 173 G~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~----~-lGa~~----~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~~ 242 (346)
T 4a2c_A 173 GLLAIQCAVALGA-KSVTAIDISSEKLALAK----S-FGAMQ----TFNSSEMSAPQMQSVLRELRFNQLILETAGVPQT 242 (346)
T ss_dssp HHHHHHHHHHTTC-SEEEEEESCHHHHHHHH----H-TTCSE----EEETTTSCHHHHHHHHGGGCSSEEEEECSCSHHH
T ss_pred chHHHHHHHHcCC-cEEEEEechHHHHHHHH----H-cCCeE----EEeCCCCCHHHHHHhhcccCCcccccccccccch
Confidence 33444 4566663 57899999999888776 3 46432 12111110 0 01123458988887777666
Q ss_pred HHHHHhhCCCCcEEEEEec
Q psy14971 76 PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~ 94 (156)
.+..++.|++||++++.-.
T Consensus 243 ~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 243 VELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp HHHHHHHCCTTCEEEECCC
T ss_pred hhhhhheecCCeEEEEEec
Confidence 6778899999999998543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=88.07 E-value=0.64 Score=36.76 Aligned_cols=73 Identities=8% Similarity=-0.026 Sum_probs=47.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-------CCCcCEEEEccCCCchHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-------EGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-------~~~fD~I~i~~~~~~i~~~l 79 (156)
+|+..| ++|++++.+++.++.++ + +|.+. ++.-+. +.+.+ ...+|.+|-..+.... ...
T Consensus 184 la~~~G--a~Vi~~~~~~~~~~~~~----~-~Ga~~-----~~~~~~-~~~~~~v~~~~~~~g~D~vid~~g~~~~-~~~ 249 (349)
T 3pi7_A 184 LAKEEG--FRPIVTVRRDEQIALLK----D-IGAAH-----VLNEKA-PDFEATLREVMKAEQPRIFLDAVTGPLA-SAI 249 (349)
T ss_dssp HHHHHT--CEEEEEESCGGGHHHHH----H-HTCSE-----EEETTS-TTHHHHHHHHHHHHCCCEEEESSCHHHH-HHH
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHH----H-cCCCE-----EEECCc-HHHHHHHHHHhcCCCCcEEEECCCChhH-HHH
Confidence 455665 69999999999888776 3 35432 222111 11111 1369999887765444 567
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
++.|++||+++..-
T Consensus 250 ~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 250 FNAMPKRARWIIYG 263 (349)
T ss_dssp HHHSCTTCEEEECC
T ss_pred HhhhcCCCEEEEEe
Confidence 88999999999853
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.06 E-value=3.4 Score=31.24 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=45.1
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CC----------CCCCcCEEEEccCCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HA----------EEGPYDIIHLGAACI 73 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~----------~~~~fD~I~i~~~~~ 73 (156)
++..+.+|+.++++++..+.+.+.++. .+-.+ +.++.+|..+. .. ..++.|.++.+++..
T Consensus 32 L~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~---~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 32 LSSNGIMVVLTCRDVTKGHEAVEKLKN-SNHEN---VVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHTTCEEEEEESCHHHHHHHHHHHHT-TTCCS---EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCCc---eEEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEECCccc
Confidence 444567999999999998888888876 35456 99999998764 10 024799999999863
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.02 E-value=1.4 Score=35.45 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=48.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-------CCCCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-------AEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-------~~~~~fD~I~i~~~~~ 73 (156)
|.+++ +|+..|. .+|+++|.+++.++.|++ +|. ..+.-+..+.+ .....+|.||-..+..
T Consensus 198 G~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~-----lGa------~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~ 265 (398)
T 1kol_A 198 GLAAAASARLLGA-AVVIVGDLNPARLAHAKA-----QGF------EIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 265 (398)
T ss_dssp HHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH-----TTC------EEEETTSSSCHHHHHHHHHSSSCEEEEEECCCTT
T ss_pred HHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHH-----cCC------cEEccCCcchHHHHHHHHhCCCCCCEEEECCCCc
Confidence 44444 4566652 489999999998888753 353 12221111100 1123699999877654
Q ss_pred c---------------hHHHHHhhCCCCcEEEEE
Q psy14971 74 E---------------VPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 74 ~---------------i~~~l~~~L~pGGrLv~~ 92 (156)
. .....++.|++||++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 266 ARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 2 345678899999999874
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=87.86 E-value=1.6 Score=31.19 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=44.8
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-C-------CCCCCcCEEEEccCCCchHHHH
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-H-------AEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~-------~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+...| .+|++++.+++..+.++ . +|.+ ..+ |..+. . .....+|.++.+++ ....+..
T Consensus 59 ~~~~G--~~V~~~~~~~~~~~~~~----~-~g~~----~~~---d~~~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~ 123 (198)
T 1pqw_A 59 AKMIG--ARIYTTAGSDAKREMLS----R-LGVE----YVG---DSRSVDFADEILELTDGYGVDVVLNSLA-GEAIQRG 123 (198)
T ss_dssp HHHHT--CEEEEEESSHHHHHHHH----T-TCCS----EEE---ETTCSTHHHHHHHHTTTCCEEEEEECCC-THHHHHH
T ss_pred HHHcC--CEEEEEeCCHHHHHHHH----H-cCCC----EEe---eCCcHHHHHHHHHHhCCCCCeEEEECCc-hHHHHHH
Confidence 34444 69999999998776654 3 3532 212 22111 0 11236999998775 3445667
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.|++||+++..-
T Consensus 124 ~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 124 VQILAPGGRFIELG 137 (198)
T ss_dssp HHTEEEEEEEEECS
T ss_pred HHHhccCCEEEEEc
Confidence 88999999999854
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.79 E-value=0.18 Score=40.08 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=37.2
Q ss_pred eEEEEccCCCCCC--CCCCcCEEEEccCCCc-----------------h---HHHHHhhCCCCcEEEEEeccC
Q psy14971 46 KNVSVKDGSKGHA--EEGPYDIIHLGAACIE-----------------V---PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 46 v~~~~gD~~~~~~--~~~~fD~I~i~~~~~~-----------------i---~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.++++||+.+.+. ..++||+|+++.+... + ...+.+.|+|||.+++.++..
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 8899999865332 2468999999977531 1 124578999999999987643
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=0.088 Score=41.40 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=48.2
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--CC---CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--KG---HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~~---~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| ++|++++.+++.++.+++ +|.+. .+-..+.. +. ......+|.+|-+.+. ......++
T Consensus 160 ~a~~~G--a~Vi~~~~~~~~~~~~~~-----~Ga~~----~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-~~~~~~~~ 227 (325)
T 3jyn_A 160 WAKALG--AKLIGTVSSPEKAAHAKA-----LGAWE----TIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLD 227 (325)
T ss_dssp HHHHHT--CEEEEEESSHHHHHHHHH-----HTCSE----EEETTTSCHHHHHHHHTTTCCEEEEEESSCG-GGHHHHHT
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHHH-----cCCCE----EEeCCCccHHHHHHHHhCCCCceEEEECCCh-HHHHHHHH
Confidence 355555 699999999998887763 25322 12111110 00 0112469999887776 45567789
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.|++||+++..-.
T Consensus 228 ~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 228 SVAPRGLVVSFGN 240 (325)
T ss_dssp TEEEEEEEEECCC
T ss_pred HhcCCCEEEEEec
Confidence 9999999998643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=1.9 Score=34.36 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=50.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|+++|.+++.++.++ + +|.+. + +-..+..+.+. ..+.+|.||-..+...
T Consensus 208 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~----~-lGa~~---v-i~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~ 277 (376)
T 1e3i_A 208 GLSAIIGCKIAGA-SRIIAIDINGEKFPKAK----A-LGATD---C-LNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ 277 (376)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCGGGHHHHH----H-TTCSE---E-ECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHH
T ss_pred HHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----H-hCCcE---E-EccccccchHHHHHHHHhCCCccEEEECCCCHH
Confidence 34444 4555552 38999999999888775 3 35432 1 11111001110 0136999998877655
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
..+..++.|++| |+++..-
T Consensus 278 ~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 278 TLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHHHHhhcCCCEEEEEC
Confidence 566778999999 9998743
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.85 E-value=0.99 Score=35.19 Aligned_cols=74 Identities=8% Similarity=0.070 Sum_probs=45.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC-CCCCC--CCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG-SKGHA--EEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~-~~~~~--~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| ++|++++.+++.++.+++ +|.+. + +-..+. .+... ....+|.+|-..+.. ..+..++.|
T Consensus 169 ~a~~~G--a~vi~~~~~~~~~~~~~~-----lGa~~---~-i~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l 236 (328)
T 1xa0_A 169 MLAKRG--YTVEASTGKAAEHDYLRV-----LGAKE---V-LAREDVMAERIRPLDKQRWAAAVDPVGGR-TLATVLSRM 236 (328)
T ss_dssp HHHHTT--CCEEEEESCTTCHHHHHH-----TTCSE---E-EECC---------CCSCCEEEEEECSTTT-THHHHHHTE
T ss_pred HHHHCC--CEEEEEECCHHHHHHHHH-----cCCcE---E-EecCCcHHHHHHHhcCCcccEEEECCcHH-HHHHHHHhh
Confidence 455555 589999999888877753 35432 1 111111 01001 124699998877664 445678899
Q ss_pred CCCcEEEEE
Q psy14971 84 KPGGRLVFH 92 (156)
Q Consensus 84 ~pGGrLv~~ 92 (156)
++||+++..
T Consensus 237 ~~~G~~v~~ 245 (328)
T 1xa0_A 237 RYGGAVAVS 245 (328)
T ss_dssp EEEEEEEEC
T ss_pred ccCCEEEEE
Confidence 999999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=1.4 Score=34.90 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=45.9
Q ss_pred HhcCCCCEEEEEeCCHH---HHHHHHHHHhhhcCCCCccceEEEEccCCC-CCCC----CCCcCEEEEccCCCchHHHHH
Q psy14971 9 GIKGERALVLILNHYMK---VKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAE----EGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~---~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~----~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+..|. .+|++++.+++ .++.++ + +|.+. + |..+ .+.+ .+.+|.||-..+........+
T Consensus 195 k~~Ga-~~Vi~~~~~~~~~~~~~~~~----~-lGa~~---v-----~~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~ 260 (357)
T 2b5w_A 195 DDKGY-ENLYCLGRRDRPDPTIDIIE----E-LDATY---V-----DSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSV 260 (357)
T ss_dssp CTTCC-CEEEEEECCCSSCHHHHHHH----H-TTCEE---E-----ETTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHH
T ss_pred HHcCC-cEEEEEeCCcccHHHHHHHH----H-cCCcc---c-----CCCccCHHHHHHhCCCCCEEEECCCChHHHHHHH
Confidence 44442 24999999988 777765 3 36432 2 2211 1110 136999998777655556778
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|++||+++..-
T Consensus 261 ~~l~~~G~iv~~g 273 (357)
T 2b5w_A 261 QALAPNGVGALLG 273 (357)
T ss_dssp HHEEEEEEEEECC
T ss_pred HHHhcCCEEEEEe
Confidence 9999999998853
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=86.81 E-value=1.9 Score=34.26 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=50.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|++++.+++.++.++ + +|.+. + +-..+..+.+. ..+.+|.||-..+...
T Consensus 204 G~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~----~-lGa~~---v-i~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 273 (374)
T 2jhf_A 204 GLSVIMGCKAAGA-ARIIGVDINKDKFAKAK----E-VGATE---C-VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLD 273 (374)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCGGGHHHHH----H-TTCSE---E-ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred HHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH----H-hCCce---E-ecccccchhHHHHHHHHhCCCCcEEEECCCCHH
Confidence 34443 4555552 38999999999888775 3 35432 1 11111001110 1136999998877655
Q ss_pred hHHHHHhhCCCC-cEEEEEe
Q psy14971 75 VPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pG-GrLv~~~ 93 (156)
.....++.|+++ |+++..-
T Consensus 274 ~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 274 TMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHHHHHHBCTTTCEEEECS
T ss_pred HHHHHHHHhhcCCcEEEEec
Confidence 666778999999 9998753
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=86.67 E-value=0.031 Score=44.32 Aligned_cols=75 Identities=8% Similarity=0.022 Sum_probs=46.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--CC---CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--KG---HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~~---~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| ++|++++.+++.++.+++ +|.+. .+-..+.. +. ......+|.+|-+.+...... ..+
T Consensus 164 ~a~~~G--a~Vi~~~~~~~~~~~~~~-----lga~~----~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~-~~~ 231 (340)
T 3gms_A 164 LSQILN--FRLIAVTRNNKHTEELLR-----LGAAY----VIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNE-LAF 231 (340)
T ss_dssp HHHHHT--CEEEEEESSSTTHHHHHH-----HTCSE----EEETTTSCHHHHHHHHTTTSCEEEEEESSCHHHHHH-HHH
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHh-----CCCcE----EEeCCcccHHHHHHHHhCCCCCcEEEECCCChhHHH-HHH
Confidence 455555 699999999998887764 24322 12111100 00 011236999998777655544 448
Q ss_pred hCCCCcEEEEEe
Q psy14971 82 QLKPGGRLVFHK 93 (156)
Q Consensus 82 ~L~pGGrLv~~~ 93 (156)
.|++||+++..-
T Consensus 232 ~l~~~G~iv~~G 243 (340)
T 3gms_A 232 SLRPNGHFLTIG 243 (340)
T ss_dssp TEEEEEEEEECC
T ss_pred HhcCCCEEEEEe
Confidence 999999999854
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.58 E-value=0.59 Score=36.50 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=45.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-CCCCCCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
|.+++ +|+..| .+|++++.+ +..+.++ + +|.+. ++.-+..+ .......+|.||-..+.... ...
T Consensus 166 G~~a~q~a~~~G--a~vi~~~~~-~~~~~~~----~-lGa~~-----~i~~~~~~~~~~~~~g~D~v~d~~g~~~~-~~~ 231 (321)
T 3tqh_A 166 GHLAIQLAKQKG--TTVITTASK-RNHAFLK----A-LGAEQ-----CINYHEEDFLLAISTPVDAVIDLVGGDVG-IQS 231 (321)
T ss_dssp HHHHHHHHHHTT--CEEEEEECH-HHHHHHH----H-HTCSE-----EEETTTSCHHHHCCSCEEEEEESSCHHHH-HHH
T ss_pred HHHHHHHHHHcC--CEEEEEecc-chHHHHH----H-cCCCE-----EEeCCCcchhhhhccCCCEEEECCCcHHH-HHH
Confidence 34443 456665 589999854 4344443 4 46532 22211111 00112469999887765555 677
Q ss_pred HhhCCCCcEEEEE
Q psy14971 80 LAQLKPGGRLVFH 92 (156)
Q Consensus 80 ~~~L~pGGrLv~~ 92 (156)
++.|++||+++..
T Consensus 232 ~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 232 IDCLKETGCIVSV 244 (321)
T ss_dssp GGGEEEEEEEEEC
T ss_pred HHhccCCCEEEEe
Confidence 8999999999985
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.18 E-value=0.75 Score=36.30 Aligned_cols=76 Identities=11% Similarity=0.012 Sum_probs=47.5
Q ss_pred HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-----CCCCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-----GHAEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-----~~~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
++... | .+|+++|.+++.++.+++ +|.+. .+-..+... .....+.+|.+|-+.+.....+..+
T Consensus 190 ~a~~~~G--a~Vi~~~~~~~~~~~~~~-----~g~~~----~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~ 258 (347)
T 1jvb_A 190 IAKAVSG--ATIIGVDVREEAVEAAKR-----AGADY----VINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYP 258 (347)
T ss_dssp HHHHHTC--CEEEEEESSHHHHHHHHH-----HTCSE----EEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGG
T ss_pred HHHHcCC--CeEEEEcCCHHHHHHHHH-----hCCCE----EecCCCccHHHHHHHHhcCCCceEEEECCCCHHHHHHHH
Confidence 34445 5 689999999998887753 24322 221112100 0011147999998887654555678
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++..-
T Consensus 259 ~~l~~~G~iv~~g 271 (347)
T 1jvb_A 259 KALAKQGKYVMVG 271 (347)
T ss_dssp GGEEEEEEEEECC
T ss_pred HHHhcCCEEEEEC
Confidence 8999999998843
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=85.92 E-value=0.32 Score=39.94 Aligned_cols=55 Identities=4% Similarity=-0.099 Sum_probs=32.5
Q ss_pred CCCEEEEEeCC-----------HHHHHHHHHHHhhhcCC-CCccceEEEEccC---CCCCCCCCCcCEEEEccCCCc
Q psy14971 13 ERALVLILNHY-----------MKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDG---SKGHAEEGPYDIIHLGAACIE 74 (156)
Q Consensus 13 ~~g~V~avD~~-----------~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~---~~~~~~~~~fD~I~i~~~~~~ 74 (156)
|.-.|+.-|.- +.+.+.+++.. |- .+ ..++.|.. ...+....++|.|+++.+++.
T Consensus 92 pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~----g~~~~---~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHW 161 (384)
T 2efj_A 92 PTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN----GRKIG---SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHW 161 (384)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT----CCCTT---SEEEEECCSCTTSCCSCTTCEEEEEEESCTTB
T ss_pred CceEEEecCCCccchHHHHhhhhhhHhhhhhhc----cCCCC---ceEEEecchhhhhccCCCCceEEEEecceeee
Confidence 34567788876 55555443321 21 12 45666654 233344678999999998764
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=85.90 E-value=0.37 Score=38.30 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=24.6
Q ss_pred CCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 61 GPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 61 ~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
..+|.||-..+..... ..++.|+++|+++..-
T Consensus 244 ~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 244 GEAKLALNCVGGKSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp CCEEEEEESSCHHHHH-HHHHTSCTTCEEEECC
T ss_pred CCceEEEECCCchhHH-HHHHHhccCCEEEEec
Confidence 4699999877655544 5679999999998853
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=1.2 Score=34.95 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=45.7
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCCchHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
++..| ++|++++.+++.++.+++. +|.+. .+-..+. +.+. ....+|.++-+.+. ......++
T Consensus 176 a~~~G--~~V~~~~~~~~~~~~~~~~----~g~~~----~~d~~~~-~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~ 243 (345)
T 2j3h_A 176 AKMMG--CYVVGSAGSKEKVDLLKTK----FGFDD----AFNYKEE-SDLTAALKRCFPNGIDIYFENVGG-KMLDAVLV 243 (345)
T ss_dssp HHHTT--CEEEEEESSHHHHHHHHHT----SCCSE----EEETTSC-SCSHHHHHHHCTTCEEEEEESSCH-HHHHHHHT
T ss_pred HHHCC--CEEEEEeCCHHHHHHHHHH----cCCce----EEecCCH-HHHHHHHHHHhCCCCcEEEECCCH-HHHHHHHH
Confidence 44444 6999999999888777533 35322 1111111 0111 01469999988765 44556788
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|++||+++..
T Consensus 244 ~l~~~G~~v~~ 254 (345)
T 2j3h_A 244 NMNMHGRIAVC 254 (345)
T ss_dssp TEEEEEEEEEC
T ss_pred HHhcCCEEEEE
Confidence 99999999875
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=0.39 Score=37.76 Aligned_cols=75 Identities=9% Similarity=-0.133 Sum_probs=42.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC----chH--------HHHHh
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI----EVP--------KEILA 81 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~----~i~--------~~l~~ 81 (156)
...|+++|+..++...++.. .. +|. + +....++.........+||.|+++.+.. .+. +...+
T Consensus 98 ~~~v~g~dVGvDl~~~pi~~-~~-~g~-~---ii~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~ 171 (277)
T 3evf_A 98 VSGVKGFTLGRDGHEKPMNV-QS-LGW-N---IITFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEK 171 (277)
T ss_dssp EEEEEEECCCCTTCCCCCCC-CB-TTG-G---GEEEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCcceeEEEeccCccccccc-Cc-CCC-C---eEEEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHH
Confidence 35788888875542111110 11 122 4 4445555432222346899999998765 111 22357
Q ss_pred hCCCC-cEEEEEec
Q psy14971 82 QLKPG-GRLVFHKG 94 (156)
Q Consensus 82 ~L~pG-GrLv~~~~ 94 (156)
.|+|| |.+|+-+=
T Consensus 172 ~LkpG~G~FV~KVf 185 (277)
T 3evf_A 172 WLACGVDNFCVKVL 185 (277)
T ss_dssp HHTTCCSEEEEEES
T ss_pred HhCCCCCeEEEEec
Confidence 89999 99999553
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=85.65 E-value=0.15 Score=40.28 Aligned_cols=77 Identities=14% Similarity=0.020 Sum_probs=48.0
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC--CCC---CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG--SKG---HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~--~~~---~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+++..+ ..+|+++|.+++.++.+++ +|.+. .+-..+. .+. ......+|.++.+...........+
T Consensus 182 ~a~~~~-g~~Vi~~~~~~~r~~~~~~-----~Ga~~----~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~ 251 (348)
T 4eez_A 182 YAKNVF-GAKVIAVDINQDKLNLAKK-----IGADV----TINSGDVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVA 251 (348)
T ss_dssp HHHHTS-CCEEEEEESCHHHHHHHHH-----TTCSE----EEEC-CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHH
T ss_pred HHHHhC-CCEEEEEECcHHHhhhhhh-----cCCeE----EEeCCCCCHHHHhhhhcCCCCceEEEEeccCcchhheehe
Confidence 344444 3799999999998776663 34322 2211121 000 1122357888887776666677789
Q ss_pred hCCCCcEEEEEe
Q psy14971 82 QLKPGGRLVFHK 93 (156)
Q Consensus 82 ~L~pGGrLv~~~ 93 (156)
.|+++|++++.-
T Consensus 252 ~l~~~G~~v~~g 263 (348)
T 4eez_A 252 SLKPMGKMVAVA 263 (348)
T ss_dssp TEEEEEEEEECC
T ss_pred eecCCceEEEEe
Confidence 999999998854
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=85.48 E-value=0.26 Score=38.17 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=45.1
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
+|+..| .+|++++.+++.++.+++ +|.+. + +-..+..+.......+|.++- .+. .......+.|+++
T Consensus 145 ~a~~~G--a~Vi~~~~~~~~~~~~~~-----~ga~~---~-~~~~~~~~~~~~~~~~d~vid-~g~-~~~~~~~~~l~~~ 211 (302)
T 1iz0_A 145 VARAMG--LRVLAAASRPEKLALPLA-----LGAEE---A-ATYAEVPERAKAWGGLDLVLE-VRG-KEVEESLGLLAHG 211 (302)
T ss_dssp HHHHTT--CEEEEEESSGGGSHHHHH-----TTCSE---E-EEGGGHHHHHHHTTSEEEEEE-CSC-TTHHHHHTTEEEE
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHHh-----cCCCE---E-EECCcchhHHHHhcCceEEEE-CCH-HHHHHHHHhhccC
Confidence 345555 699999999988877643 35432 2 111110000000146999998 665 4556778899999
Q ss_pred cEEEEE
Q psy14971 87 GRLVFH 92 (156)
Q Consensus 87 GrLv~~ 92 (156)
|+++..
T Consensus 212 G~~v~~ 217 (302)
T 1iz0_A 212 GRLVYI 217 (302)
T ss_dssp EEEEEC
T ss_pred CEEEEE
Confidence 999874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=85.24 E-value=3.6 Score=31.00 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=44.4
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~ 72 (156)
+...+++|+..+++++.++.+.+.++. ++-.+ +.++..|..+.. ...+..|.++.+++.
T Consensus 28 la~~Ga~Vvi~~r~~~~~~~~~~~~~~-~~~~~---~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 28 LDQLGAKLVFTYRKERSRKELEKLLEQ-LNQPE---AHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp HHHTTCEEEEEESSGGGHHHHHHHHGG-GTCSS---CEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCc---EEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence 444568999999999999888888877 46556 888999986521 112678999998764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=85.10 E-value=1.4 Score=35.65 Aligned_cols=47 Identities=6% Similarity=-0.116 Sum_probs=34.7
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK 55 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~ 55 (156)
.|.||- |++... ..+|+++|+|+.++...++.+ . . +| ++++.+|+.+
T Consensus 69 ~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~-~--~~---l~ii~~D~l~ 116 (353)
T 1i4w_A 69 VGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E-G--SP---LQILKRDPYD 116 (353)
T ss_dssp TCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T-T--SS---CEEECSCTTC
T ss_pred CCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c-C--CC---EEEEECCccc
Confidence 366664 333322 268999999999999988876 3 1 47 9999999964
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=1.3 Score=34.86 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=47.8
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CC---CCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GH---AEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~---~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..|. .+|++++.+++.++.+++ +|.+. ++..+..+ .. .....+|.||-..+.........
T Consensus 186 ~a~~~Ga-~~Vi~~~~~~~~~~~~~~-----~Ga~~-----~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~ 254 (348)
T 2d8a_A 186 VAKASGA-YPVIVSEPSDFRRELAKK-----VGADY-----VINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGL 254 (348)
T ss_dssp HHHHTTC-CSEEEECSCHHHHHHHHH-----HTCSE-----EECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHH
T ss_pred HHHHcCC-CEEEEECCCHHHHHHHHH-----hCCCE-----EECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHH
Confidence 3555542 389999999998887763 35422 11111110 00 11236999998887655566778
Q ss_pred hhCCCCcEEEEEe
Q psy14971 81 AQLKPGGRLVFHK 93 (156)
Q Consensus 81 ~~L~pGGrLv~~~ 93 (156)
+.|+++|+++..-
T Consensus 255 ~~l~~~G~iv~~g 267 (348)
T 2d8a_A 255 QAVTPAGRVSLLG 267 (348)
T ss_dssp HHEEEEEEEEECC
T ss_pred HHHhcCCEEEEEc
Confidence 8999999998753
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.79 E-value=0.32 Score=38.52 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-------CCCCCcCEEEEccCCCchHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-------AEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-------~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+|+..| .+|++++.+++.++.+++ +|.+. ++..+ +.+ .....+|.+|-+.+.. .....
T Consensus 179 ~a~~~G--a~Vi~~~~~~~~~~~~~~-----~ga~~-----v~~~~--~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~ 243 (342)
T 4eye_A 179 IAKGMG--AKVIAVVNRTAATEFVKS-----VGADI-----VLPLE--EGWAKAVREATGGAGVDMVVDPIGGP-AFDDA 243 (342)
T ss_dssp HHHHTT--CEEEEEESSGGGHHHHHH-----HTCSE-----EEESS--TTHHHHHHHHTTTSCEEEEEESCC---CHHHH
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHh-----cCCcE-----EecCc--hhHHHHHHHHhCCCCceEEEECCchh-HHHHH
Confidence 455555 699999999998877764 25432 22222 111 1123699999877764 44567
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
++.|++||+++..-
T Consensus 244 ~~~l~~~G~iv~~G 257 (342)
T 4eye_A 244 VRTLASEGRLLVVG 257 (342)
T ss_dssp HHTEEEEEEEEEC-
T ss_pred HHhhcCCCEEEEEE
Confidence 88999999999853
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.74 E-value=2.1 Score=34.02 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=48.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCC--CCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHA--EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~--~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..| ++|++++.+++.++.+++ +|.+. ++..+-.+ ... ....+|.+|-+.+. ..
T Consensus 177 G~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~-----~Ga~~-----~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-~~ 243 (362)
T 2c0c_A 177 GQFAMQLSKKAK--CHVIGTCSSDEKSAFLKS-----LGCDR-----PINYKTEPVGTVLKQEYPEGVDVVYESVGG-AM 243 (362)
T ss_dssp HHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-----TTCSE-----EEETTTSCHHHHHHHHCTTCEEEEEECSCT-HH
T ss_pred HHHHHHHHHhCC--CEEEEEECCHHHHHHHHH-----cCCcE-----EEecCChhHHHHHHHhcCCCCCEEEECCCH-HH
Confidence 33443 345554 689999999988877763 35432 12111111 000 12469999987775 44
Q ss_pred HHHHHhhCCCCcEEEEEe
Q psy14971 76 PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~ 93 (156)
.+..++.|+++|+++..-
T Consensus 244 ~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 244 FDLAVDALATKGRLIVIG 261 (362)
T ss_dssp HHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEe
Confidence 556788999999998854
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.62 E-value=2.1 Score=33.28 Aligned_cols=74 Identities=8% Similarity=-0.008 Sum_probs=47.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--CCC---CCCCCcCEEEEccCCCchHHHHHhh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--KGH---AEEGPYDIIHLGAACIEVPKEILAQ 82 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~~~---~~~~~fD~I~i~~~~~~i~~~l~~~ 82 (156)
+...| .+|++++.+++.++.+++ +|.+. .+-..|.. +.. .....+|.++-+++ .......++.
T Consensus 161 a~~~G--~~V~~~~~~~~~~~~~~~-----~g~~~----~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~ 228 (327)
T 1qor_A 161 AKALG--AKLIGTVGTAQKAQSALK-----AGAWQ----VINYREEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDC 228 (327)
T ss_dssp HHHHT--CEEEEEESSHHHHHHHHH-----HTCSE----EEETTTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHT
T ss_pred HHHcC--CEEEEEeCCHHHHHHHHH-----cCCCE----EEECCCccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHH
Confidence 44455 699999999988877764 24321 12111110 000 01236999999888 5566678899
Q ss_pred CCCCcEEEEEe
Q psy14971 83 LKPGGRLVFHK 93 (156)
Q Consensus 83 L~pGGrLv~~~ 93 (156)
|++||+++..-
T Consensus 229 l~~~G~iv~~g 239 (327)
T 1qor_A 229 LQRRGLMVSFG 239 (327)
T ss_dssp EEEEEEEEECC
T ss_pred hcCCCEEEEEe
Confidence 99999998754
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.38 E-value=0.39 Score=38.47 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=42.9
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CCCCCCCcCEEEEccCCC-chHHHHHhh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GHAEEGPYDIIHLGAACI-EVPKEILAQ 82 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~~~-~i~~~l~~~ 82 (156)
+|+..| ++|++++ +++..+.++ + +|.+. ++.-+-.+ .......+|.+|-+.+.. ..-...++.
T Consensus 203 la~~~G--a~Vi~~~-~~~~~~~~~----~-lGa~~-----v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~ 269 (375)
T 2vn8_A 203 VMKAWD--AHVTAVC-SQDASELVR----K-LGADD-----VIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLK 269 (375)
T ss_dssp HHHHTT--CEEEEEE-CGGGHHHHH----H-TTCSE-----EEETTSSCHHHHHHTSCCBSEEEESSCTTHHHHGGGGBC
T ss_pred HHHhCC--CEEEEEe-ChHHHHHHH----H-cCCCE-----EEECCchHHHHHHhhcCCCCEEEECCCChhhhhHHHHHh
Confidence 355555 6899998 566555553 4 46432 12111111 011124699999877665 222455678
Q ss_pred CCCCcEEEEEe
Q psy14971 83 LKPGGRLVFHK 93 (156)
Q Consensus 83 L~pGGrLv~~~ 93 (156)
|++||+++..-
T Consensus 270 l~~~G~iv~~g 280 (375)
T 2vn8_A 270 KWSGATYVTLV 280 (375)
T ss_dssp SSSCCEEEESC
T ss_pred hcCCcEEEEeC
Confidence 99999998853
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=84.31 E-value=2.5 Score=34.68 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=48.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--------------------C---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--------------------H--- 57 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--------------------~--- 57 (156)
|.+++ +|+..| ++|++++.+++.++.+++ +|.+. ++.-...+. .
T Consensus 242 G~~avqlak~~G--a~vi~~~~~~~~~~~~~~-----lGa~~-----vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~ 309 (456)
T 3krt_A 242 GSYATQFALAGG--ANPICVVSSPQKAEICRA-----MGAEA-----IIDRNAEGYRFWKDENTQDPKEWKRFGKRIREL 309 (456)
T ss_dssp HHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-----HTCCE-----EEETTTTTCCSEEETTEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CeEEEEECCHHHHHHHHh-----hCCcE-----EEecCcCcccccccccccchHHHHHHHHHHHHH
Confidence 34444 355554 699999999998887753 35432 121111000 0
Q ss_pred CCCCCcCEEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 58 AEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 58 ~~~~~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
.....+|++|-..+. ......++.|++||+++..-
T Consensus 310 t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 310 TGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESC
T ss_pred hCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEe
Confidence 112479999877665 44556788999999999854
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.22 E-value=1.4 Score=34.81 Aligned_cols=74 Identities=16% Similarity=-0.009 Sum_probs=47.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+|+..| ++|++++.+++.++.+++ +|.+. ++..+..+ +.+ ...+|.+|-+.+.. .....+
T Consensus 187 ~a~~~G--a~Vi~~~~~~~~~~~~~~-----lGa~~-----~~~~~~~~-~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~ 252 (353)
T 4dup_A 187 LARAFG--AEVYATAGSTGKCEACER-----LGAKR-----GINYRSED-FAAVIKAETGQGVDIILDMIGAA-YFERNI 252 (353)
T ss_dssp HHHHTT--CEEEEEESSHHHHHHHHH-----HTCSE-----EEETTTSC-HHHHHHHHHSSCEEEEEESCCGG-GHHHHH
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHHh-----cCCCE-----EEeCCchH-HHHHHHHHhCCCceEEEECCCHH-HHHHHH
Confidence 355555 689999999998887764 25322 12111111 100 24699999877754 445678
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
+.|+++|+++..-.
T Consensus 253 ~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 253 ASLAKDGCLSIIAF 266 (353)
T ss_dssp HTEEEEEEEEECCC
T ss_pred HHhccCCEEEEEEe
Confidence 89999999988543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=84.19 E-value=2.2 Score=33.25 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=45.9
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-C-------CCCCCcCEEEEccCCCchHHHH
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-H-------AEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~-------~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+...| .+|++++.+++.++.+++ +|.+. .+ |..+. . .....+|.+|-+++. ...+..
T Consensus 166 a~~~G--~~Vi~~~~~~~~~~~~~~-----~g~~~----~~---d~~~~~~~~~i~~~~~~~~~d~vi~~~g~-~~~~~~ 230 (333)
T 1wly_A 166 ARHLG--ATVIGTVSTEEKAETARK-----LGCHH----TI---NYSTQDFAEVVREITGGKGVDVVYDSIGK-DTLQKS 230 (333)
T ss_dssp HHHTT--CEEEEEESSHHHHHHHHH-----HTCSE----EE---ETTTSCHHHHHHHHHTTCCEEEEEECSCT-TTHHHH
T ss_pred HHHCC--CEEEEEeCCHHHHHHHHH-----cCCCE----EE---ECCCHHHHHHHHHHhCCCCCeEEEECCcH-HHHHHH
Confidence 44444 699999999988877754 24321 11 21110 0 012369999988776 455677
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
++.|++||+++..-
T Consensus 231 ~~~l~~~G~iv~~g 244 (333)
T 1wly_A 231 LDCLRPRGMCAAYG 244 (333)
T ss_dssp HHTEEEEEEEEECC
T ss_pred HHhhccCCEEEEEe
Confidence 88999999998754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=83.89 E-value=1.1 Score=35.89 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------hHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------VPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------i~~~l~~ 81 (156)
+...| .+|+.+|++++.++.+++.... . +..+..+..+.......+|.|+.+.+.+. +.+...+
T Consensus 186 a~~~G--a~V~v~dr~~~r~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~ 255 (361)
T 1pjc_A 186 AVGLG--AQVQIFDINVERLSYLETLFGS-----R---VELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVE 255 (361)
T ss_dssp HHHTT--CEEEEEESCHHHHHHHHHHHGG-----G---SEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHT
T ss_pred HHhCC--CEEEEEeCCHHHHHHHHHhhCc-----e---eEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHh
Confidence 34444 5999999999988888765432 1 32222110000001135899988765543 2456678
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.+++||+++-...
T Consensus 256 ~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 256 QMRTGSVIVDVAV 268 (361)
T ss_dssp TSCTTCEEEETTC
T ss_pred hCCCCCEEEEEec
Confidence 9999998877543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=83.82 E-value=1.3 Score=34.44 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=46.6
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC-CCCCC--CCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG-SKGHA--EEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~-~~~~~--~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
+|+..| .+|++++.+++.++.+++ +|.+. + +-..+. .+... ....+|.+|-..+. ......++.|
T Consensus 170 ~a~~~G--a~vi~~~~~~~~~~~~~~-----lGa~~---v-~~~~~~~~~~~~~~~~~~~d~vid~~g~-~~~~~~~~~l 237 (330)
T 1tt7_A 170 MLNKRG--YDVVASTGNREAADYLKQ-----LGASE---V-ISREDVYDGTLKALSKQQWQGAVDPVGG-KQLASLLSKI 237 (330)
T ss_dssp HHHHHT--CCEEEEESSSSTHHHHHH-----HTCSE---E-EEHHHHCSSCCCSSCCCCEEEEEESCCT-HHHHHHHTTE
T ss_pred HHHHCC--CEEEEEeCCHHHHHHHHH-----cCCcE---E-EECCCchHHHHHHhhcCCccEEEECCcH-HHHHHHHHhh
Confidence 455666 579999999888777753 25432 2 111111 11111 12469999887765 3445678899
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
++||+++..-
T Consensus 238 ~~~G~iv~~G 247 (330)
T 1tt7_A 238 QYGGSVAVSG 247 (330)
T ss_dssp EEEEEEEECC
T ss_pred cCCCEEEEEe
Confidence 9999998753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.21 E-value=4.3 Score=32.70 Aligned_cols=81 Identities=10% Similarity=-0.007 Sum_probs=48.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC------CCCCCCcCEEEEccCCC-
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG------HAEEGPYDIIHLGAACI- 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~------~~~~~~fD~I~i~~~~~- 73 (156)
|.+++ +|+..|. .+|+++|.+++.++.+++ +|.+. ++..+..+. ......+|.||-..+..
T Consensus 226 G~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~-----lGa~~-----vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~ 294 (404)
T 3ip1_A 226 GLAAVAILKHAGA-SKVILSEPSEVRRNLAKE-----LGADH-----VIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQ 294 (404)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH-----HTCSE-----EECTTTSCHHHHHHHHTTTCCCSEEEECSSCHH
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-----cCCCE-----EEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcH
Confidence 44444 4556652 499999999998888763 35432 221111110 01123699999877765
Q ss_pred chHHHHHhhC----CCCcEEEEEe
Q psy14971 74 EVPKEILAQL----KPGGRLVFHK 93 (156)
Q Consensus 74 ~i~~~l~~~L----~pGGrLv~~~ 93 (156)
...+.+.+.| ++||+++..-
T Consensus 295 ~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 295 LVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp HHHHHHHHHHHHCSCCCCEEEECS
T ss_pred HHHHHHHHHHHhccCCCcEEEEeC
Confidence 2444555566 9999999853
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=83.15 E-value=0.17 Score=40.09 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=48.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~~ 74 (156)
|.+++ +|+..|. .+|++++.+++.++.+++. .. . ++..+. +.+.+ ...+|.||-..+...
T Consensus 177 G~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~l-a~-----~-----v~~~~~-~~~~~~~~~~~~~g~D~vid~~g~~~ 243 (343)
T 2dq4_A 177 GLMAAMVVRASGA-GPILVSDPNPYRLAFARPY-AD-----R-----LVNPLE-EDLLEVVRRVTGSGVEVLLEFSGNEA 243 (343)
T ss_dssp HHHHHHHHHHTTC-CSEEEECSCHHHHGGGTTT-CS-----E-----EECTTT-SCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred HHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-HH-----h-----ccCcCc-cCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 33443 4555552 3899999999887766543 11 1 111110 01100 236999998877655
Q ss_pred hHHHHHhhCCCCcEEEEEe
Q psy14971 75 VPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~~ 93 (156)
..+..++.|+++|+++..-
T Consensus 244 ~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 244 AIHQGLMALIPGGEARILG 262 (343)
T ss_dssp HHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 5667789999999998753
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=83.06 E-value=0.55 Score=37.05 Aligned_cols=38 Identities=29% Similarity=0.521 Sum_probs=27.8
Q ss_pred CCCCCC-CCcCEEEEccCCC----chH-------------HHHHhhCCCCcEEEEE
Q psy14971 55 KGHAEE-GPYDIIHLGAACI----EVP-------------KEILAQLKPGGRLVFH 92 (156)
Q Consensus 55 ~~~~~~-~~fD~I~i~~~~~----~i~-------------~~l~~~L~pGGrLv~~ 92 (156)
-|+|.. +.||.||++..-+ ++- ...++.|+|||.+++-
T Consensus 203 lG~P~~~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~ 258 (324)
T 3trk_A 203 LGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIR 258 (324)
T ss_dssp GCCCGGGCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred cCCCCcCCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 355554 8999999998764 221 2346889999999986
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=0.28 Score=38.53 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--CCCC--CCCCcCEEEEccCCCchHHHHHhhC
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--KGHA--EEGPYDIIHLGAACIEVPKEILAQL 83 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~~~~--~~~~fD~I~i~~~~~~i~~~l~~~L 83 (156)
++..| .+|++++.+++.++.+.+ . +|.+. .+-..+.. +... ..+.+|.++-+.+. ......++.|
T Consensus 170 a~~~G--a~Vi~~~~~~~~~~~~~~---~-~g~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l 238 (336)
T 4b7c_A 170 ARLKG--CRVVGIAGGAEKCRFLVE---E-LGFDG----AIDYKNEDLAAGLKRECPKGIDVFFDNVGG-EILDTVLTRI 238 (336)
T ss_dssp HHHTT--CEEEEEESSHHHHHHHHH---T-TCCSE----EEETTTSCHHHHHHHHCTTCEEEEEESSCH-HHHHHHHTTE
T ss_pred HHHCC--CEEEEEeCCHHHHHHHHH---H-cCCCE----EEECCCHHHHHHHHHhcCCCceEEEECCCc-chHHHHHHHH
Confidence 44444 699999999988776633 3 35422 12111110 0000 02469999887764 3455678899
Q ss_pred CCCcEEEEEe
Q psy14971 84 KPGGRLVFHK 93 (156)
Q Consensus 84 ~pGGrLv~~~ 93 (156)
++||+++..-
T Consensus 239 ~~~G~iv~~G 248 (336)
T 4b7c_A 239 AFKARIVLCG 248 (336)
T ss_dssp EEEEEEEECC
T ss_pred hhCCEEEEEe
Confidence 9999999853
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=81.34 E-value=3.4 Score=33.43 Aligned_cols=63 Identities=21% Similarity=0.140 Sum_probs=43.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--------CCCCcCEEEEccCCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--------EEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--------~~~~fD~I~i~~~~~ 73 (156)
|-+++-++..| ...|.++|+++...+..+.|+. + ..++.+|..+... ....+|+|+.+.+|.
T Consensus 13 GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~~------~---~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ 82 (376)
T 3g7u_A 13 GGLSLGAARAG-FDVKMAVEIDQHAINTHAINFP------R---SLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ 82 (376)
T ss_dssp SHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHCT------T---SEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCC
T ss_pred CHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhCC------C---CceEecChhhcCHHHHHhhcccCCCeeEEEecCCCC
Confidence 44555444555 3568899999998887777753 3 5677888765432 135799999999886
Q ss_pred c
Q psy14971 74 E 74 (156)
Q Consensus 74 ~ 74 (156)
.
T Consensus 83 ~ 83 (376)
T 3g7u_A 83 G 83 (376)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=13 Score=28.42 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=41.0
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----------CCCCcCEEEEccCCC
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----------EEGPYDIIHLGAACI 73 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----------~~~~fD~I~i~~~~~ 73 (156)
+...+.+|+.++++++..+.+++..+. .+ + +.++.+|..+... ..+..|.++.+++..
T Consensus 53 la~~G~~V~~~~r~~~~~~~~~~~~~~-~~--~---~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 120 (293)
T 3grk_A 53 AREAGAELAFTYQGDALKKRVEPLAEE-LG--A---FVAGHCDVADAASIDAVFETLEKKWGKLDFLVHAIGFS 120 (293)
T ss_dssp HHHTTCEEEEEECSHHHHHHHHHHHHH-HT--C---EEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred HHHCCCEEEEEcCCHHHHHHHHHHHHh-cC--C---ceEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 444567999999998777766666555 33 5 8899999875211 125789999998764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=80.87 E-value=3.1 Score=33.99 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=36.4
Q ss_pred CchHHHH-H-HhcCCCCEEEEEeCCHHHHHHHHHHHhhhc---CC-CCccceEEEEccC
Q psy14971 1 MGDLNVI-V-GIKGERALVLILNHYMKVKSKNQNNKKLNI---KQ-NRKSFKNVSVKDG 53 (156)
Q Consensus 1 ~G~la~l-a-~l~g~~g~V~avD~~~~~~~~A~~~l~~~~---g~-~n~~~v~~~~gD~ 53 (156)
.|+.++. + +..++.++|+++|-+|+..+..++|++. + +. +| ++++..-+
T Consensus 237 ~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~-~~N~~~~~~---v~~~~~al 291 (409)
T 2py6_A 237 IGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR-YTDTNFASR---ITVHGCGA 291 (409)
T ss_dssp TSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH-TTTSTTGGG---EEEECSEE
T ss_pred cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-hhccCCCCC---EEEEEeEE
Confidence 3777765 4 3455558999999999999999999986 2 24 56 88776443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=80.74 E-value=3.5 Score=33.62 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEcc--CCCC------------------CC--CCCCcC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKD--GSKG------------------HA--EEGPYD 64 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD--~~~~------------------~~--~~~~fD 64 (156)
+|+..| ++|++++.+++.++.++ + +|.+. + +-..+ ..+. .. ....+|
T Consensus 240 la~~~G--a~vi~~~~~~~~~~~~~----~-lGa~~---~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~D 308 (447)
T 4a0s_A 240 FVKNGG--GIPVAVVSSAQKEAAVR----A-LGCDL---V-INRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPD 308 (447)
T ss_dssp HHHHTT--CEEEEEESSHHHHHHHH----H-TTCCC---E-EEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHcC--CEEEEEeCCHHHHHHHH----h-cCCCE---E-EecccccccccccccccccchhhhHHHHHHHHHhCCCce
Confidence 345554 69999999999888774 3 36533 2 21111 1000 00 024699
Q ss_pred EEEEccCCCchHHHHHhhCCCCcEEEEEe
Q psy14971 65 IIHLGAACIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 65 ~I~i~~~~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+|-..+.. .....++.|++||+++..-
T Consensus 309 vvid~~G~~-~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 309 IVFEHTGRV-TFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp EEEECSCHH-HHHHHHHHSCTTCEEEESC
T ss_pred EEEECCCch-HHHHHHHHHhcCCEEEEEe
Confidence 999877653 3456678999999999854
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=80.52 E-value=2.8 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=22.9
Q ss_pred CcCEEEEccCCCchHHHHHhhCCCCcEEEEE
Q psy14971 62 PYDIIHLGAACIEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 62 ~fD~I~i~~~~~~i~~~l~~~L~pGGrLv~~ 92 (156)
.+|.||-..+-... ...++.|++||+++..
T Consensus 240 ~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 240 QPRLALNCVGGKSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp CCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred CceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence 49999877664444 3467899999999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 156 | ||||
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 2e-09 | |
| d1r18a_ | 223 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 8e-09 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 2e-08 | |
| d1jg1a_ | 215 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-07 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 1e-06 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 2e-09
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 31 QNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLV 90
N +K + + V DG G+AEE PYD IH+GAA VP+ ++ QLKPGGRL+
Sbjct: 119 NNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLI 178
Query: 91 FHKGLHNGHYQSLAYIDRLPNGTYLREK 118
G G+ Q L D+L +G+ +
Sbjct: 179 LPVGPAGGN-QMLEQYDKLQDGSIKMKP 205
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 50.2 bits (119), Expect = 8e-09
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 26 VKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKP 85
V+ N + + DG KG+ PY+ IH+GAA + P E++ QL
Sbjct: 123 VRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLAS 182
Query: 86 GGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREK 118
GGRL+ G G Q + D+ NG +
Sbjct: 183 GGRLIVPVGPDGGS-QYMQQYDKDANGKVEMTR 214
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 49.2 bits (116), Expect = 2e-08
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 37 NIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLH 96
N+++ DG G E PYD+I + EVP+ QLK GGR++ L
Sbjct: 119 NVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLK 178
Query: 97 NGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGG 129
Q A++ + + + GG
Sbjct: 179 LSRRQ-PAFLFKKKDPYLVGNYKLETRFITAGG 210
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 47.1 bits (111), Expect = 1e-07
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 21 NHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEIL 80
+ ++ + K N+++ +V + DGSKG + PYD+I + A ++P+ ++
Sbjct: 104 VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLI 163
Query: 81 AQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNG 112
QLK GG+L+ G ++ Q L + + +G
Sbjct: 164 EQLKIGGKLIIPVGSYHLW-QELLEVRKTKDG 194
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 44.0 bits (103), Expect = 1e-06
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 52 DGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPN 111
DG+ G+ EE PYD + + A + + QLK GG ++ G G Q L + + N
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG--VGRVQKLYKVIKKGN 181
Query: 112 GTYLREKSGYPIDKPLGGLISLKEQMDE 139
E G + +GGL + D+
Sbjct: 182 S-PSLENLGEVMFGRIGGLYGFYDDYDD 208
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 156 | |||
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.92 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.92 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.91 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.9 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.87 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.46 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.46 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.45 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.43 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.3 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.25 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.24 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.2 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.16 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.14 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.1 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.09 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.07 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.06 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.03 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.99 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.96 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.95 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.94 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.94 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.93 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.91 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.9 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.9 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.89 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.83 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.82 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.81 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.8 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.76 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.74 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.71 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.71 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.69 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.69 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.66 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.66 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.6 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.6 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.6 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.6 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.57 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.57 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.57 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.53 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.53 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.51 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.51 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.5 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.46 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.46 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.43 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.43 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.39 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.39 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.22 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.19 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.18 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.18 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.16 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.13 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.13 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.11 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.09 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.04 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.95 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.95 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.93 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.9 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.88 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.81 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.59 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.5 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.48 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.46 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.15 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.12 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.09 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 96.92 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.81 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.31 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.09 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.94 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 95.72 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 95.63 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.33 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.81 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.76 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.67 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.64 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 94.02 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 93.96 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.88 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.86 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.75 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.66 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 93.61 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 93.3 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.74 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.7 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.55 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.32 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 92.29 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.81 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.72 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.69 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.53 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.17 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.95 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.88 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.86 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.6 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 88.45 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 87.86 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.06 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 86.66 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 83.15 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 81.68 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 81.14 |
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=2.2e-25 Score=170.24 Aligned_cols=126 Identities=25% Similarity=0.295 Sum_probs=113.9
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+||+|+ +|++++ ++|+++|+++++++.|++|+++ +|++| +++++||+.++++..++||+|+++++++.+|+.|
T Consensus 89 sGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~-~g~~n---v~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~~l 162 (215)
T d1jg1a_ 89 SGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER-AGVKN---VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPL 162 (215)
T ss_dssp TSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHH
T ss_pred CChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHH-cCCce---eEEEECccccCCcccCcceeEEeecccccCCHHH
Confidence 588886 566776 7899999999999999999999 59999 9999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCcc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLK 134 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~ 134 (156)
.++|+||||||+|++..+. .|.+..++|.+ +.+..+.+++++|+||.+..+|+
T Consensus 163 ~~qL~~gGrLv~pv~~~~~-~q~l~~~~k~~-~~~~~~~l~~v~fvPl~g~~~~~ 215 (215)
T d1jg1a_ 163 IEQLKIGGKLIIPVGSYHL-WQELLEVRKTK-DGIKIKNHGGVAFVPLIGEYGWK 215 (215)
T ss_dssp HHTEEEEEEEEEEECSSSS-CEEEEEEEEET-TEEEEEEEEEECCCBCBSTTSBC
T ss_pred HHhcCCCCEEEEEEccCCc-cEEEEEEEEEC-CEEEEEEEccEEEEcCCCcccCC
Confidence 9999999999999987665 57788888874 45999999999999999988874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2e-25 Score=171.19 Aligned_cols=133 Identities=33% Similarity=0.496 Sum_probs=116.8
Q ss_pred CchHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh----cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch
Q psy14971 1 MGDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLN----IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 1 ~G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~----~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i 75 (156)
.||++ +||+++++.++|+++|+++++++.|++|+++. ++..+ +.++.||+..++++.++||+|+++++.+++
T Consensus 87 sGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~---~~~~~gD~~~~~~~~~~fD~I~~~~~~~~i 163 (224)
T d1i1na_ 87 SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR---VQLVVGDGRMGYAEEAPYDAIHVGAAAPVV 163 (224)
T ss_dssp TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS---EEEEESCGGGCCGGGCCEEEEEECSBBSSC
T ss_pred CCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccc---eEEEEeecccccchhhhhhhhhhhcchhhc
Confidence 48887 57899999999999999999999999999873 12356 999999999988888999999999999999
Q ss_pred HHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchhh
Q psy14971 76 PKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDEY 140 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~~ 140 (156)
|+.+.++|||||+||++++..+. .|.+..++|.+++.+..+.+++++|+||.+ .+.++++|
T Consensus 164 p~~l~~~LkpGG~LV~pv~~~~~-~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~---~~~~~~~~ 224 (224)
T d1i1na_ 164 PQALIDQLKPGGRLILPVGPAGG-NQMLEQYDKLQDGSIKMKPLMGVIYVPLTD---KEKQWSRW 224 (224)
T ss_dssp CHHHHHTEEEEEEEEEEESCTTS-CEEEEEEEECTTSCEEEEEEEEECCCBCCC---HHHHCCCC
T ss_pred CHHHHhhcCCCcEEEEEEccCCC-cEEEEEEEEeCCCeEEEEEEeeEEEECCCC---chhhccCC
Confidence 99999999999999999987665 678889999877889999999999999975 44566666
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.91 E-value=1.3e-24 Score=166.67 Aligned_cols=123 Identities=25% Similarity=0.396 Sum_probs=108.8
Q ss_pred CchHHH-HHHhcCCCC-----EEEEEeCCHHHHHHHHHHHhhh----cCCCCccceEEEEccCCCCCCCCCCcCEEEEcc
Q psy14971 1 MGDLNV-IVGIKGERA-----LVLILNHYMKVKSKNQNNKKLN----IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA 70 (156)
Q Consensus 1 ~G~la~-la~l~g~~g-----~V~avD~~~~~~~~A~~~l~~~----~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~ 70 (156)
.||+|. +++++++.+ +|+++|+++++++.|++|+... .+..| +.++.+|+.+++++.++||+|++++
T Consensus 91 sGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n---v~~~~~d~~~~~~~~~~fD~Iiv~~ 167 (223)
T d1r18a_ 91 SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ---LLIVEGDGRKGYPPNAPYNAIHVGA 167 (223)
T ss_dssp TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS---EEEEESCGGGCCGGGCSEEEEEECS
T ss_pred CCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE---EEEEecccccccccccceeeEEEEe
Confidence 488884 678887644 8999999999999999997652 24568 9999999999999889999999999
Q ss_pred CCCchHHHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeec
Q psy14971 71 ACIEVPKEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPL 127 (156)
Q Consensus 71 ~~~~i~~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL 127 (156)
+++++|+.|.++|||||+||+|++.... .|.+.+++|.+++.++.+.+++|+|+||
T Consensus 168 a~~~~p~~l~~~Lk~gG~lV~pvg~~~~-~q~l~~i~k~~~g~~~~~~l~~v~FvPL 223 (223)
T d1r18a_ 168 AAPDTPTELINQLASGGRLIVPVGPDGG-SQYMQQYDKDANGKVEMTRLMGVMYVPL 223 (223)
T ss_dssp CBSSCCHHHHHTEEEEEEEEEEESCSSS-CEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred echhchHHHHHhcCCCcEEEEEEecCCC-cEEEEEEEEeCCCcEEEEEEeeEEeecC
Confidence 9999999999999999999999986654 6889999998778899999999999997
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.90 E-value=6.5e-24 Score=162.85 Aligned_cols=124 Identities=22% Similarity=0.250 Sum_probs=110.1
Q ss_pred CchHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
+||+|++ |++. ++|+++|+++++++.|++++.. ..| ++++.+|+..++++.+|||+|+++++.+++|+.|
T Consensus 81 sGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~---~~n---v~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l 151 (224)
T d1vbfa_ 81 IGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY---YNN---IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKP 151 (224)
T ss_dssp TSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT---CSS---EEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHH
T ss_pred CCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc---ccc---cccccCchhhcchhhhhHHHHHhhcchhhhhHHH
Confidence 5889965 5553 7999999999999999999875 258 9999999999998889999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCcccc
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQ 136 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~ 136 (156)
.++|||||+||+|++..+ .|.+..++|.+ +.+..+.+++++|+||.+..+|.+.
T Consensus 152 ~~qLk~GGrLV~pvg~~~--~q~l~~i~k~~-~~~~~~~l~~v~F~pl~g~~G~~~~ 205 (224)
T d1vbfa_ 152 YEQLKEGGIMILPIGVGR--VQKLYKVIKKG-NSPSLENLGEVMFGRIGGLYGFYDD 205 (224)
T ss_dssp HHTEEEEEEEEEEECSSS--SEEEEEEECCT-TSCEEEEEEEECCCBCCSTTSCSSC
T ss_pred HHhcCCCCEEEEEEcCCC--ceEEEEEEEEC-CceEEEEeeeEEEEECCCcccCCcC
Confidence 999999999999998654 58899999974 4699999999999999999998765
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=3e-22 Score=152.08 Aligned_cols=126 Identities=22% Similarity=0.261 Sum_probs=109.1
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
.|++++ +|+++++.++|+++|+++++++.|++|++. .+++| +.++++|+.++++..++||+|+++++.+++|+.+
T Consensus 86 tG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~-~~~~n---~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~p~~l 161 (213)
T d1dl5a1 86 TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-LGIEN---VIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETW 161 (213)
T ss_dssp TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEESCGGGCCGGGCCEEEEEECSBBSCCCHHH
T ss_pred cchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh-hcccc---cccccCchHHccccccchhhhhhhccHHHhHHHH
Confidence 478885 678899999999999999999999999999 48888 9999999998888888999999999999999999
Q ss_pred HhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCC
Q psy14971 80 LAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLI 131 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~ 131 (156)
.++|||||+||++++......+.+..+.+. ++.+..+.+++++|+||.+..
T Consensus 162 ~~~LkpGG~lv~pv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Fvpl~g~~ 212 (213)
T d1dl5a1 162 FTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFITAGGNL 212 (213)
T ss_dssp HHHEEEEEEEEEEBCBGGGTBCEEEEEEEE-TTEEEEEEEEECCCCBCCGGG
T ss_pred HHhcCCCcEEEEEECccCCcEEEEEEEEEe-CCeEEEEEEeeEEEEECCCCC
Confidence 999999999999987543313455566665 678999999999999998743
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.46 E-value=6.5e-15 Score=108.36 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=90.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC-CccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN-RKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~-n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
+|.+++.+.. ..++|+++|+++++++.|++|+++ .|+. | +++++||+.+...+...||.|+++....++.
T Consensus 44 sG~~s~~lA~--~~~~V~avD~~~~~l~~a~~n~~~-~gl~~~---v~~~~gda~~~~~~~~~~D~v~~~~~~~~~~~~~ 117 (186)
T d1l3ia_ 44 TGGVTLELAG--RVRRVYAIDRNPEAISTTEMNLQR-HGLGDN---VTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL 117 (186)
T ss_dssp TSHHHHHHHT--TSSEEEEEESCHHHHHHHHHHHHH-TTCCTT---EEEEESCHHHHHTTSCCEEEEEESCCTTCHHHHH
T ss_pred eEcccccccc--cceEEEEecCCHHHHHHHHHHHHH-cCCCcc---eEEEECchhhcccccCCcCEEEEeCccccchHHH
Confidence 4777765433 347999999999999999999999 4884 6 9999999877655667899999999887665
Q ss_pred HHHHhhCCCCcEEEEEeccCCCcceEEEEEEEcCCCcEEEEEeeceEeeecCCCCCccccchh
Q psy14971 77 KEILAQLKPGGRLVFHKGLHNGHYQSLAYIDRLPNGTYLREKSGYPIDKPLGGLISLKEQMDE 139 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~pL~~~~~~~~~~~~ 139 (156)
+.+.+.|||||+|++.....+. ...+....+..+..+....+...+..++...+.+.++++.
T Consensus 118 ~~~~~~LkpgG~lvi~~~~~e~-~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~nPv 179 (186)
T d1l3ia_ 118 RIIKDKLKPGGRIIVTAILLET-KFEAMECLRDLGFDVNITELNIARGRALDRGTMMVSRNPV 179 (186)
T ss_dssp HHHHHTEEEEEEEEEEECBHHH-HHHHHHHHHHTTCCCEEEEEEEEEEEEETTEEEEEECCCE
T ss_pred HHHHHHhCcCCEEEEEeecccc-HHHHHHHHHHcCCCeEEEEEEEEEeEEcCCceEEECCCCE
Confidence 4567899999999997653321 1121111122223344444444555566666665555543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=1.2e-13 Score=107.41 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=77.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhc--CCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNI--KQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVP 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~--g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~ 76 (156)
.|++|+ ||..++|+|+|+++|+++++++.|++|++.+. ..+| ++++++|+.+...+++.||+||++.+.+ ...
T Consensus 107 sG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~n---v~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l 183 (264)
T d1i9ga_ 107 SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN---WRLVVSDLADSELPDGSVDRAVLDMLAPWEVL 183 (264)
T ss_dssp TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT---EEEECSCGGGCCCCTTCEEEEEEESSCGGGGH
T ss_pred CcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCce---EEEEecccccccccCCCcceEEEecCCHHHHH
Confidence 488885 78899999999999999999999999998731 2467 9999999877544568899999988765 455
Q ss_pred HHHHhhCCCCcEEEEEeccC
Q psy14971 77 KEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~~~ 96 (156)
+.+.+.|||||+|++..++-
T Consensus 184 ~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 184 DAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp HHHHHHEEEEEEEEEEESSH
T ss_pred HHHHhccCCCCEEEEEeCcc
Confidence 78899999999999987653
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.6e-14 Score=115.43 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=72.9
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcC-----------CCCccceEEEEccCCCCCC--CCCCcCEE
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIK-----------QNRKSFKNVSVKDGSKGHA--EEGPYDII 66 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g-----------~~n~~~v~~~~gD~~~~~~--~~~~fD~I 66 (156)
.|++|+ ||+.+++.|+|+++|+++++++.|++|++++ + .+| +.+.++|...... ...+||+|
T Consensus 109 sG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~-~~~~~~~~~~~~~~n---v~~~~~di~~~~~~~~~~~fD~V 184 (324)
T d2b25a1 109 SGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW-RDSWKLSHVEEWPDN---VDFIHKDISGATEDIKSLTFDAV 184 (324)
T ss_dssp TSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH-HHHHTTTCSSCCCCC---EEEEESCTTCCC-------EEEE
T ss_pred ccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh-hhhhhhhhhhccccc---eeEEecchhhcccccCCCCcceE
Confidence 488885 7889999999999999999999999999863 2 246 9999999865432 24679999
Q ss_pred EEccCCC-chHHHHHhhCCCCcEEEEEeccC
Q psy14971 67 HLGAACI-EVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 67 ~i~~~~~-~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
|++.+.+ .+.+.+.+.|||||+|++.+++-
T Consensus 185 ~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 185 ALDMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp EECSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred eecCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 9987665 45678899999999999987653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.43 E-value=3.3e-13 Score=104.14 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=76.5
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
.|.+|+ +|+.+++.|+|+++|+++++++.|++|++++.+..| +++..+|..+..+ +.+||+|+++...+ .+-+.
T Consensus 96 sG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~n---v~~~~~Di~~~~~-~~~fD~V~ld~p~p~~~l~~ 171 (250)
T d1yb2a1 96 SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN---VRTSRSDIADFIS-DQMYDAVIADIPDPWNHVQK 171 (250)
T ss_dssp TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT---EEEECSCTTTCCC-SCCEEEEEECCSCGGGSHHH
T ss_pred CcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCc---eEEEEeeeecccc-cceeeeeeecCCchHHHHHH
Confidence 478875 688899999999999999999999999988423567 9999999987655 46899999987665 45577
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|||||+|++...+
T Consensus 172 ~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 172 IASMMKPGSVATFYLPN 188 (250)
T ss_dssp HHHTEEEEEEEEEEESS
T ss_pred HHHhcCCCceEEEEeCC
Confidence 88999999999997764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=3.6e-12 Score=98.91 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=76.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-chHHH
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-EVPKE 78 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-~i~~~ 78 (156)
.|++++ +|+.+++.|+|+++|+++++++.|++|+++ +++.+. +.+..+|...... ...||.|+++.+.+ .+.+.
T Consensus 114 sG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~-~g~~~~--v~~~~~d~~~~~~-~~~~D~V~~d~p~p~~~l~~ 189 (266)
T d1o54a_ 114 SGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK-WGLIER--VTIKVRDISEGFD-EKDVDALFLDVPDPWNYIDK 189 (266)
T ss_dssp TSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH-TTCGGG--EEEECCCGGGCCS-CCSEEEEEECCSCGGGTHHH
T ss_pred CCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-hccccC--cEEEecccccccc-ccceeeeEecCCCHHHHHHH
Confidence 477775 678899999999999999999999999999 587433 9999999766544 46799999988765 56688
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
+.+.|||||+|++...+
T Consensus 190 ~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 190 CWEALKGGGRFATVCPT 206 (266)
T ss_dssp HHHHEEEEEEEEEEESS
T ss_pred HHhhcCCCCEEEEEeCc
Confidence 99999999999997764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.25 E-value=1.6e-11 Score=91.41 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=69.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+ ++|+++|++++|++.|+++++. .+.+| ++++++|+.+.....++||+|++..+..+++
T Consensus 27 G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~-~~~~~---i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~~~ 100 (231)
T d1vl5a_ 27 GHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG-NGHQQ---VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASF 100 (231)
T ss_dssp CHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred cHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccc-ccccc---ccccccccccccccccccccccccccccccCCHHHH
Confidence 66665433333 6999999999999999999988 48888 9999999887433467899999999987764
Q ss_pred -HHHHhhCCCCcEEEEEe
Q psy14971 77 -KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||+|++..
T Consensus 101 l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 101 VSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEe
Confidence 35789999999999864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.24 E-value=5.4e-12 Score=95.91 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=75.7
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-------CCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-------EGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-------~~~fD~I~i~~~~~ 73 (156)
||-|+ ||..++++|+|+++|.+++..+.|+++++++ |+.++ |+++.||+.+.++. .++||.||+++...
T Consensus 71 GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~-g~~~~--i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~ 147 (227)
T d1susa1 71 GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-GVDHK--IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD 147 (227)
T ss_dssp GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-TCGGG--EEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCST
T ss_pred hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh-ccccc--eeeeehHHHHHHHHHHhccccCCceeEEEeccchh
Confidence 67775 6778888999999999999999999999994 88665 99999999654332 46899999999998
Q ss_pred chHH---HHHhhCCCCcEEEEEec
Q psy14971 74 EVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
.+++ .+.+.|+|||.+++...
T Consensus 148 ~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 148 NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp THHHHHHHHHHHBCTTCCEEEETT
T ss_pred hhHHHHHHHHhhcCCCcEEEEccC
Confidence 8774 56789999999999754
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=3.4e-11 Score=90.35 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=69.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++......+ ++|+|+|++++|++.|++++... +.+| +.++++|+.+...++++||+|++..+..+++
T Consensus 28 G~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~ 101 (234)
T d1xxla_ 28 GHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK-GVEN---VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA 101 (234)
T ss_dssp SHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH-TCCS---EEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred cHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccc-cccc---ccccccccccccccccccceeeeeceeecccCHHHH
Confidence 66665433333 79999999999999999999884 8888 9999999987433568899999999887654
Q ss_pred -HHHHhhCCCCcEEEEE
Q psy14971 77 -KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 -~~l~~~L~pGGrLv~~ 92 (156)
..+.+.|||||++++.
T Consensus 102 l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 102 VREVARVLKQDGRFLLV 118 (234)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHeeCCCcEEEEE
Confidence 3578999999999885
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.4e-11 Score=93.07 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=75.8
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~~ 73 (156)
.|+-|+ +|..+.++|+|+++|.+++..+.|+++++++ |+.++ ++++.||+.+..+ ...+||.||+++...
T Consensus 70 ~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a-g~~~~--i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~ 146 (219)
T d2avda1 70 TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-EAEHK--IDLRLKPALETLDELLAAGEAGTFDVAVVDADKE 146 (219)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-TCTTT--EEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST
T ss_pred hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc-Cccce--EEEEEeehhhcchhhhhhcccCCccEEEEeCCHH
Confidence 367775 6777778899999999999999999999994 88665 9999999865332 246899999999998
Q ss_pred chHH---HHHhhCCCCcEEEEEec
Q psy14971 74 EVPK---EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~i~~---~l~~~L~pGGrLv~~~~ 94 (156)
.+++ .+.++|+|||.|++...
T Consensus 147 ~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 147 NCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp THHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCC
Confidence 8764 56899999999999754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=8.1e-11 Score=88.94 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=69.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++..+ ++|++||++++|++.|+++.+. .|+.++ ++++.+|+.+.. ..++||.|++..+..+++
T Consensus 45 G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~-~gl~~~--v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~d~~~ 118 (245)
T d1nkva_ 45 GEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEE-LGVSER--VHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFAG 118 (245)
T ss_dssp CHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHH-TTCTTT--EEEEESCCTTCC-CSSCEEEEEEESCGGGTSSSHH
T ss_pred CHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHH-hhcccc--chhhhhHHhhcc-ccCceeEEEEEehhhccCCHHH
Confidence 65665 344433 7999999999999999999988 487654 999999998754 457899999988877654
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
+.+.+.|||||++++..
T Consensus 119 ~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 119 AEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp HHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHHcCcCcEEEEEe
Confidence 46788999999999964
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=3.8e-11 Score=90.20 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=71.9
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC------CCCcCEEEEccCCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE------EGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~------~~~fD~I~i~~~~~ 73 (156)
.|+.|+ ||..+.++++|+++|+++++++.|+++++.+ |+.++ |+++.||+.+.++. ..+||.||+++...
T Consensus 67 ~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~-gl~~~--i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~ 143 (214)
T d2cl5a1 67 CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA-GLQDK--VTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 143 (214)
T ss_dssp TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH-TCGGG--EEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGG
T ss_pred chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc-CCCcc--ceeeeccccccccchhhcccccccceeeeccccc
Confidence 377775 5667788899999999999999999999995 88655 99999998764432 35799999998877
Q ss_pred chHH-----HHHhhCCCCcEEEEEe
Q psy14971 74 EVPK-----EILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 ~i~~-----~l~~~L~pGGrLv~~~ 93 (156)
.... ...+.|+|||.||+..
T Consensus 144 ~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 144 RYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp GHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccccHHHHHHHhCccCCCcEEEEeC
Confidence 6553 2346799999988854
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.09 E-value=2.2e-10 Score=88.23 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=69.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++..+ .+|+++|+++.+++.|+++.+. .|+.++ ++++++|+.+...+.++||+|++..+..+++
T Consensus 79 G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~-~gl~~~--v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~ 153 (282)
T d2o57a1 79 GGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQ-AGLADN--ITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK 153 (282)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH-HTCTTT--EEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred cHHHhhhhccCC--cEEEEEeccchhhhhhhccccc-cccccc--ccccccccccccccccccchhhccchhhhccCHHH
Confidence 55664 455543 6999999999999999999998 487543 9999999987543567899999988877665
Q ss_pred --HHHHhhCCCCcEEEEEe
Q psy14971 77 --KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||+|++..
T Consensus 154 ~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 154 VFQECARVLKPRGVMAITD 172 (282)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEE
Confidence 35789999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=3.5e-10 Score=83.17 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=67.6
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.++..... .+.+|+|+|++++|++.|++++.. .+. + +.++.+|+.+......+||+|++..+..+++
T Consensus 49 G~~~~~la~--~~~~v~giD~S~~~i~~ak~~~~~-~~~-~---~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~ 121 (226)
T d1ve3a1 49 GGFSFLLED--YGFEVVGVDISEDMIRKAREYAKS-RES-N---VEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELN 121 (226)
T ss_dssp SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHH-TTC-C---CEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHH
T ss_pred chhhhhHhh--hhcccccccccccchhhhhhhhcc-ccc-c---ccccccccccccccCcCceEEEEecchhhCChhHHH
Confidence 555543322 347999999999999999999987 353 5 8899999887544568899999999887764
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||+|++...
T Consensus 122 ~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 122 QVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCcCcEEEEEEc
Confidence 246899999999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.06 E-value=4.5e-11 Score=92.06 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=67.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc---hHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE---VPK 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~---i~~ 77 (156)
.|.+++.+...| .+|+|+|+|+++++.|++|++.+ ++ + ++++.+|..+..+ .++||.|+++..... +.+
T Consensus 131 sG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n-~~-~---~~~~~~d~~~~~~-~~~fD~V~ani~~~~l~~l~~ 202 (254)
T d2nxca1 131 SGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRN-GV-R---PRFLEGSLEAALP-FGPFDLLVANLYAELHAALAP 202 (254)
T ss_dssp TSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHT-TC-C---CEEEESCHHHHGG-GCCEEEEEEECCHHHHHHHHH
T ss_pred hhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHc-CC-c---eeEEecccccccc-ccccchhhhccccccHHHHHH
Confidence 488888877776 68999999999999999999985 76 4 6789998765433 478999998765443 335
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
.+.+.|||||+|++.
T Consensus 203 ~~~~~LkpGG~lilS 217 (254)
T d2nxca1 203 RYREALVPGGRALLT 217 (254)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEE
Confidence 678999999999984
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.03 E-value=3.3e-10 Score=87.67 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=70.3
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. ++...+++++|+++|+++++++.|+++++. .+. + ++++.+|+.+. +...+||.|++...+++++
T Consensus 39 G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~-~~~-~---~~f~~~d~~~~-~~~~~fD~v~~~~~l~~~~d~~~ 112 (281)
T d2gh1a1 39 GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-LPY-D---SEFLEGDATEI-ELNDKYDIAICHAFLLHMTTPET 112 (281)
T ss_dssp THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS-SSS-E---EEEEESCTTTC-CCSSCEEEEEEESCGGGCSSHHH
T ss_pred CHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc-ccc-c---ccccccccccc-cccCCceEEEEehhhhcCCCHHH
Confidence 66665 455666678999999999999999999987 464 6 99999998764 3345799999999887764
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|||||++++...
T Consensus 113 ~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 113 MLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp HHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHcCcCcEEEEEEC
Confidence 357899999999998664
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.99 E-value=1.7e-09 Score=79.17 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=67.8
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
+|.+++.+...+ .+|+++|+++.+++.|++|++.+ ++.+ ..++++.+|..+..+ ..+||+|+++.+.+...
T Consensus 63 ~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~-~l~~-~~i~~~~~d~~~~~~-~~~fD~Ii~~~p~~~~~~~~~ 137 (194)
T d1dusa_ 63 YGVIGIALADEV--KSTTMADINRRAIKLAKENIKLN-NLDN-YDIRVVHSDLYENVK-DRKYNKIITNPPIRAGKEVLH 137 (194)
T ss_dssp TSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT-TCTT-SCEEEEECSTTTTCT-TSCEEEEEECCCSTTCHHHHH
T ss_pred CChhHHHHHhhc--cccceeeeccccchhHHHHHHHh-CCcc-ceEEEEEcchhhhhc-cCCceEEEEcccEEecchhhh
Confidence 477877654443 68999999999999999999884 6532 018999999887444 57899999988765322
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.|+|||+|++...
T Consensus 138 ~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 138 RIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHhcCcCcEEEEEEe
Confidence 345788999999988654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.96 E-value=1.6e-09 Score=80.53 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=71.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCc----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIE---- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~---- 74 (156)
+|..++..+...|...++|+|+++.+++.|.++.++ .+++| |.++.+|+.... ...+.+|.|++..+.+.
T Consensus 40 ~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~-~~l~N---v~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~ 115 (204)
T d2fcaa1 40 KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD-SEAQN---VKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKR 115 (204)
T ss_dssp TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH-SCCSS---EEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGG
T ss_pred CcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH-HhccC---chhcccchhhhhcccCchhhhccccccccccchhh
Confidence 365555444457889999999999999999999998 59999 999999986532 23578999999987753
Q ss_pred ----------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----------i~~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.+.|||||+|++...
T Consensus 116 h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD 145 (204)
T d2fcaa1 116 HEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 145 (204)
T ss_dssp GGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred hcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 22467899999999998753
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.95 E-value=1.9e-09 Score=82.91 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=69.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHH
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKE 78 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~ 78 (156)
.|.+++.+...+ .++|+++|++++.++.+++|++.+ ++.++ ++++++|+.+... ...||+|+++-+.. ..-+.
T Consensus 118 ~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n-~l~~~--v~~~~~D~~~~~~-~~~~D~Ii~~~p~~~~~~l~~ 192 (260)
T d2frna1 118 IGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN-KVEDR--MSAYNMDNRDFPG-ENIADRILMGYVVRTHEFIPK 192 (260)
T ss_dssp TTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT-TCTTT--EEEECSCTTTCCC-CSCEEEEEECCCSSGGGGHHH
T ss_pred EcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHh-CCCce--EEEEEcchHHhcc-CCCCCEEEECCCCchHHHHHH
Confidence 478888765555 379999999999999999999996 88665 9999999987543 57899999986543 33356
Q ss_pred HHhhCCCCcEEEEE
Q psy14971 79 ILAQLKPGGRLVFH 92 (156)
Q Consensus 79 l~~~L~pGGrLv~~ 92 (156)
.++.|++||.|.+.
T Consensus 193 a~~~l~~gG~lh~~ 206 (260)
T d2frna1 193 ALSIAKDGAIIHYH 206 (260)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHhhcCCCCEEEEE
Confidence 77899999998664
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=4.9e-10 Score=83.43 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=64.6
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH--------HHHhhCCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--------EILAQLKPG 86 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--------~l~~~L~pG 86 (156)
.+|+++|++++|++.|+++++. .+..+ ++++++|+.+.......||+|++.....++++ .+.+.||||
T Consensus 84 ~~v~~vD~s~~~l~~ak~~~~~-~~~~~---~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~ 159 (222)
T d2ex4a1 84 REVDMVDITEDFLVQAKTYLGE-EGKRV---RNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN 159 (222)
T ss_dssp SEEEEEESCHHHHHHHHHHTGG-GGGGE---EEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred CEEEEeecCHHHhhcccccccc-ccccc---cccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCCc
Confidence 5899999999999999999987 36677 99999999875555688999999998887752 457899999
Q ss_pred cEEEEEec
Q psy14971 87 GRLVFHKG 94 (156)
Q Consensus 87 GrLv~~~~ 94 (156)
|.+++...
T Consensus 160 G~~~i~~~ 167 (222)
T d2ex4a1 160 GIIVIKDN 167 (222)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEc
Confidence 99999754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.94 E-value=2.8e-09 Score=77.84 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|..+......| .+|+++|+++++++.|+++.+. .++++ +++..+|..+..+ .+.||.|++....+.+|
T Consensus 42 G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~-~~~~~---~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~ 114 (198)
T d2i6ga1 42 GRNSLYLAANG--YDVTAWDKNPASMANLERIKAA-EGLDN---LQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIP 114 (198)
T ss_dssp SHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-TTCTT---EEEEECCTTTCCC-CCCEEEEEEESCGGGSCTTHHH
T ss_pred CHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhh-ccccc---hhhhheecccccc-cccccEEEEeeeeecCCHHHHH
Confidence 55554322223 6999999999999999999988 48888 9999999876444 47899999999887764
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 115 ~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 115 GLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 245678999999998654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.93 E-value=1.8e-09 Score=81.61 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=68.5
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--C-CCCCcCEEEEccCCCchH-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--A-EEGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~-~~~~fD~I~i~~~~~~i~- 76 (156)
|.++ .+|.++|++|+|+|+|+++++++.++++++. . .| +..+.+|+.... . ....+|+|+.+.+.+.-+
T Consensus 85 G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-~--~~---~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~~~~~ 158 (227)
T d1g8aa_ 85 GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-R--RN---IVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAK 158 (227)
T ss_dssp TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-C--TT---EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHH
T ss_pred CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-c--CC---ceEEEEECCCcccccccccceEEEEEEccccchHH
Confidence 5555 6899999999999999999999999999876 2 46 888999886432 1 235789999988776544
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 159 ~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 159 ILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhcccCCeEEEEE
Confidence 45678999999999865
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.2e-09 Score=82.45 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=66.1
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
|.++.......++..|+++|+++++++.|+++. .| ++++.+|+.+.....+.||.|++..+...+ +++.+
T Consensus 96 G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~---~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~e~~r 165 (268)
T d1p91a_ 96 GYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQ---VTFCVASSHRLPFSDTSMDAIIRIYAPCKA-EELAR 165 (268)
T ss_dssp STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TT---SEEEECCTTSCSBCTTCEEEEEEESCCCCH-HHHHH
T ss_pred cHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------cc---ccceeeehhhccCCCCCEEEEeecCCHHHH-HHHHH
Confidence 555544334456789999999999999998653 35 899999998754456889999988777665 56899
Q ss_pred hCCCCcEEEEEecc
Q psy14971 82 QLKPGGRLVFHKGL 95 (156)
Q Consensus 82 ~L~pGGrLv~~~~~ 95 (156)
.|||||+|++....
T Consensus 166 vLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 166 VVKPGGWVITATPG 179 (268)
T ss_dssp HEEEEEEEEEEEEC
T ss_pred HhCCCcEEEEEeeC
Confidence 99999999998753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.90 E-value=1.1e-09 Score=86.74 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=70.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCc--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~-- 74 (156)
.|.+++.+...|. .+|+++|++++.++.|++|++.+ |+.++ ++++++|+.+.. ....+||+|+++.+...
T Consensus 156 ~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~n-gl~~~--~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~ 231 (324)
T d2as0a2 156 TGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN-GVEDR--MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQH 231 (324)
T ss_dssp TTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-TCGGG--EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSS
T ss_pred ccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHc-CCCcc--ceeeechhhhhhHHHHhccCCCCchhcCCccccCC
Confidence 3677776655554 69999999999999999999996 87433 999999986522 13468999999987631
Q ss_pred -------------hHHHHHhhCCCCcEEEEEeccC
Q psy14971 75 -------------VPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 -------------i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+-....+.|+|||+|++.....
T Consensus 232 ~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 232 EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 1234568899999999987654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.90 E-value=2.8e-09 Score=79.82 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=63.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC-CCch--H--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA-CIEV--P-- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~-~~~i--~-- 76 (156)
|.++......+ .+|+++|++++|++.|++++... +. + ++++++|+.+. +....||.|++..+ ...+ +
T Consensus 53 G~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~-~~-~---i~~~~~d~~~l-~~~~~fD~I~~~~~~~~~~~~~~~ 124 (251)
T d1wzna1 53 GIPTLELAERG--YEVVGLDLHEEMLRVARRKAKER-NL-K---IEFLQGDVLEI-AFKNEFDAVTMFFSTIMYFDEEDL 124 (251)
T ss_dssp CHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-TC-C---CEEEESCGGGC-CCCSCEEEEEECSSGGGGSCHHHH
T ss_pred Cccchhhcccc--eEEEEEeeccccccccccccccc-cc-c---chheehhhhhc-ccccccchHhhhhhhhhcCChHHH
Confidence 66665443333 68999999999999999999873 64 6 99999998764 33468999998643 3332 2
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 125 ~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 125 RKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEec
Confidence 357899999999998653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=8.9e-10 Score=87.04 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=68.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----CCCCCcCEEEEccCCCc--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACIE-- 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~~-- 74 (156)
.|-+++.+.. + .++|+++|+++.+++.|++|++.+ |++| ++++.+|+.+.. .....||+|+++.++..
T Consensus 156 tG~~s~~~a~-g-~~~V~~vD~s~~al~~a~~n~~~n-gl~~---~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~ 229 (318)
T d1wxxa2 156 AGGFALHLAL-G-FREVVAVDSSAEALRRAEENARLN-GLGN---VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKG 229 (318)
T ss_dssp TTHHHHHHHH-H-EEEEEEEESCHHHHHHHHHHHHHT-TCTT---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCS
T ss_pred CcHHHHHHHh-c-CCcEEeecchHHHHHHHHHHHHHc-CCCC---cceeeccHHHHhhhhHhhhcCCCEEEEcCCccccc
Confidence 3666654433 3 379999999999999999999995 9888 999999986521 22468999999987531
Q ss_pred ---h----------HHHHHhhCCCCcEEEEEeccC
Q psy14971 75 ---V----------PKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 75 ---i----------~~~l~~~L~pGGrLv~~~~~~ 96 (156)
+ .....+.|+|||+|++..+..
T Consensus 230 ~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 230 KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 1 224578899999999987643
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.83 E-value=2.8e-08 Score=73.72 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=71.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCCc-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACIE----- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~~----- 74 (156)
|..++..+...|...++|+|+++.++..|.++..+ .+++| +.++.+|+.+.. .....+|.|++..+.+.
T Consensus 43 G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~-~~l~N---i~~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h 118 (204)
T d1yzha1 43 GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE-VGVPN---IKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRH 118 (204)
T ss_dssp SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-HCCSS---EEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGG
T ss_pred CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh-hcccc---ceeeecCHHHHhhhccCCceehhcccccccccchhh
Confidence 55555444557889999999999999999999998 49999 999999987632 23578999999987642
Q ss_pred ---------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ---------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ---------i~~~l~~~L~pGGrLv~~~~ 94 (156)
+.+.+.+.|||||.|.+.+.
T Consensus 119 ~krRl~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 119 EKRRLTYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp GGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 23467899999999988653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.82 E-value=1e-08 Score=77.52 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=61.0
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchH----------HHHHhhC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVP----------KEILAQL 83 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~----------~~l~~~L 83 (156)
++|+|+|++++|++.|+++... .+.... +.+.++|+..... ...+||+|++..+.+.++ ..+.+.|
T Consensus 48 ~~v~GiD~S~~~l~~A~~r~~~-~~~~~~--v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~L 124 (252)
T d1ri5a_ 48 GEYYGVDIAEVSINDARVRARN-MKRRFK--VFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHL 124 (252)
T ss_dssp SEEEEEESCHHHHHHHHHHHHT-SCCSSE--EEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTE
T ss_pred CeEEEecCCHHHHHHHHHHHHh-cCCCcc--eEEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhcee
Confidence 6899999999999999999877 354422 9999999865333 356899999998887653 2456899
Q ss_pred CCCcEEEEEec
Q psy14971 84 KPGGRLVFHKG 94 (156)
Q Consensus 84 ~pGGrLv~~~~ 94 (156)
||||++++.+.
T Consensus 125 k~gG~~i~~~~ 135 (252)
T d1ri5a_ 125 RPGGYFIMTVP 135 (252)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 99999998654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.82 E-value=4.1e-09 Score=79.16 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=62.3
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEcc-CCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGA-ACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~-~~~~i----- 75 (156)
|.++......+ .+|+|+|.+++|++.|++++.. .+. + ++++++|+.+. +...+||.|++.. +...+
T Consensus 49 G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~-~~~-~---v~~~~~d~~~~-~~~~~fD~i~~~~~~~~~~~~~~~ 120 (246)
T d1y8ca_ 49 GNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS-QGL-K---PRLACQDISNL-NINRKFDLITCCLDSTNYIIDSDD 120 (246)
T ss_dssp STTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH-TTC-C---CEEECCCGGGC-CCSCCEEEEEECTTGGGGCCSHHH
T ss_pred CHHHHHHHHhC--CccEeeccchhhhhhccccccc-cCc-c---ceeeccchhhh-cccccccccceeeeeeeccCCHHH
Confidence 44554333333 5899999999999999999887 365 6 99999998764 3346899999853 33322
Q ss_pred ----HHHHHhhCCCCcEEEEEec
Q psy14971 76 ----PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ----~~~l~~~L~pGGrLv~~~~ 94 (156)
...+.+.|+|||.+++.+.
T Consensus 121 ~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 121 LKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEeC
Confidence 2356889999999998543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=7.9e-09 Score=80.09 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=71.5
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC---ch--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI---EV-- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~---~i-- 75 (156)
.|.+++......|..+|+++|++++.++.|++|+++ ++++| |+++++|..+.++ ...||.|+++.+.- ++
T Consensus 119 SG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~-~~~~~---v~~~~~d~~~~~~-~~~fDlIvsNPPYi~~~~~~~ 193 (274)
T d2b3ta1 119 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH-LAIKN---IHILQSDWFSALA-GQQFAMIVSNPPYIDEQDPHL 193 (274)
T ss_dssp TSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH-HTCCS---EEEECCSTTGGGT-TCCEEEEEECCCCBCTTCHHH
T ss_pred hhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH-hCccc---ceeeecccccccC-CCceeEEEecchhhhhhhhcc
Confidence 477887665666789999999999999999999999 49888 9999999877554 35899999986531 00
Q ss_pred --------------------------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 --------------------------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 --------------------------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-....+.|+|||.|++-++.
T Consensus 194 ~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~ 239 (274)
T d2b3ta1 194 QQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 239 (274)
T ss_dssp HSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred cccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 01335789999999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.80 E-value=1.1e-08 Score=77.64 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+++++|+ +++++.|++++.. .++.++ ++++.+|..+..+ .+||+|++...++++++
T Consensus 92 G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~r--v~~~~~D~~~~~~--~~~D~v~~~~vlh~~~d~~~~ 165 (253)
T d1tw3a2 92 GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD-EGLSDR--VDVVEGDFFEPLP--RKADAIILSFVLLNWPDHDAV 165 (253)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH-TTCTTT--EEEEECCTTSCCS--SCEEEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHH-hhcccc--hhhccccchhhcc--cchhheeeccccccCCchhhH
Confidence 666654444457789999998 7899999999988 476443 9999999876443 56999999998876642
Q ss_pred ----HHHhhCCCCcEEEEEec
Q psy14971 78 ----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|||||+|++...
T Consensus 166 ~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 166 RILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp HHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEEec
Confidence 46789999999998643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.76 E-value=3.1e-09 Score=83.91 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=68.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCC----CCCCCcCEEEEccCCC-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGH----AEEGPYDIIHLGAACI- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~----~~~~~fD~I~i~~~~~- 73 (156)
.|-+++.|...| ..+|+++|+++..++.|++|++.+ ++ .+ ++++.+|+.+.+ ....+||.|+++.+.-
T Consensus 155 ~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n-~l~~~~---~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~ 229 (317)
T d2b78a2 155 TAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN-HLDMAN---HQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA 229 (317)
T ss_dssp TTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT-TCCCTT---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-
T ss_pred CcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHh-cccCcc---eEEEEccHHHHHHHHHhhcCCCCEEEEcChhhc
Confidence 366776665544 378999999999999999999886 65 46 999999986532 2346899999997642
Q ss_pred --------------chHHHHHhhCCCCcEEEEEeccC
Q psy14971 74 --------------EVPKEILAQLKPGGRLVFHKGLH 96 (156)
Q Consensus 74 --------------~i~~~l~~~L~pGGrLv~~~~~~ 96 (156)
.+-....+.|+|||.|++...+.
T Consensus 230 ~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 230 RNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 12234578899999999987653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.74 E-value=2.1e-08 Score=74.41 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=65.6
Q ss_pred chHHH-HHHhc-CCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 2 GDLNV-IVGIK-GERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 2 G~la~-la~l~-g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
|.++. +++.. .++.+|+|+|++++|++.|+++++. .+...+ +.+..+|..+. + ...+|.|++....+.++
T Consensus 51 G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~--~~~~~~d~~~~-~-~~~~d~i~~~~~l~~~~~~d 125 (225)
T d1im8a_ 51 GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIP--VEILCNDIRHV-E-IKNASMVILNFTLQFLPPED 125 (225)
T ss_dssp CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSC--EEEECSCTTTC-C-CCSEEEEEEESCGGGSCGGG
T ss_pred hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccch--hhhccchhhcc-c-cccceeeEEeeeccccChhh
Confidence 56664 45544 4678999999999999999999987 354332 88888887653 2 35789999987776542
Q ss_pred -----HHHHhhCCCCcEEEEEe
Q psy14971 77 -----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 -----~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||.+++..
T Consensus 126 ~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 126 RIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCceeeccc
Confidence 35789999999999864
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.71 E-value=1.6e-08 Score=79.52 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=73.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------ 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------ 75 (156)
|..+.++.++...+.|++.|+++..++..++|+++ +|..| +.+...|..........||+|+++++|+..
T Consensus 129 gKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r-~~~~~---i~~~~~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~ 204 (313)
T d1ixka_ 129 GKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR-LGVLN---VILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKN 204 (313)
T ss_dssp HHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH-HTCCS---EEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--
T ss_pred hhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH-HHhhc---cccccccccccccccccccEEEEccccccCCceeec
Confidence 44567888888889999999999999999999999 59988 888888876543335789999999998632
Q ss_pred H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| ......|||||+||..+++
T Consensus 205 p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 205 PERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 1 1346789999999998873
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.71 E-value=4.2e-09 Score=74.49 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=68.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCch----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEV---- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i---- 75 (156)
.|.+++.|...|. .+|+++|.++++++.+++|++. ++..++ ++++++|+..... ...+||.||++.+...-
T Consensus 25 tG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~-~~~~~~--~~ii~~D~~~~l~~~~~~fDiIf~DPPy~~~~~~~ 100 (152)
T d2esra1 25 SGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIM-TKAENR--FTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVA 100 (152)
T ss_dssp TCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHT-TTCGGG--EEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHH
T ss_pred cCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhh-cccccc--hhhhcccccccccccccccceeEechhhccchHHH
Confidence 4778887766666 6999999999999999999998 587655 9999999865322 24689999999764321
Q ss_pred -HHHHH--hhCCCCcEEEEEec
Q psy14971 76 -PKEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -~~~l~--~~L~pGGrLv~~~~ 94 (156)
.+.+. ..|+|||.+++-..
T Consensus 101 ~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 101 TIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHCCCcCCCeEEEEEeC
Confidence 12332 45899999998543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=7e-08 Score=75.10 Aligned_cols=89 Identities=9% Similarity=0.026 Sum_probs=69.8
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC---CCCCcCEEEEccCCCch---
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA---EEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~---~~~~fD~I~i~~~~~~i--- 75 (156)
|..+.+|.+++..++|+++|+++..++..++|+++ +|+.| +.+...|+....+ ....||+|+++++|+..
T Consensus 107 gKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r-~g~~~---~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~ 182 (293)
T d2b9ea1 107 NKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR-AGVSC---CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMP 182 (293)
T ss_dssp HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-TTCCS---EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC----
T ss_pred hHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh-cCccc---eeeeehhhhhhcccccccceeeEEeecCcccchhhh
Confidence 34567888999899999999999999999999999 69999 9999999765322 23679999999998632
Q ss_pred ---HH-------------HH----------HhhCCCCcEEEEEec
Q psy14971 76 ---PK-------------EI----------LAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ---~~-------------~l----------~~~L~pGGrLv~~~~ 94 (156)
|+ .+ .-.|+|||+||..++
T Consensus 183 ~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~l~~gG~lvYsTC 227 (293)
T d2b9ea1 183 SRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTC 227 (293)
T ss_dssp --------------CCHHHHHHHHHHHHHHHTTCTTCCEEEEEES
T ss_pred cccchhhccCCcchhhHHHHhhhhHHhHHHhhhcccccEEEEeec
Confidence 11 11 114799999999877
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.69 E-value=3.6e-08 Score=74.32 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=63.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCchH--
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEVP-- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i~-- 76 (156)
.|+.+. +|.. ++++.|+|+|++++|++.|+++.+. .+| +.++.+|+..... ....+|.+++.......+
T Consensus 85 sG~~~~~la~~-~~~g~V~aVDiS~~~i~~a~~~a~~---~~n---i~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~ 157 (230)
T d1g8sa_ 85 AGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAE---REN---IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQA 157 (230)
T ss_dssp SSHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTT---CTT---EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHH
T ss_pred cCHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhh---hcc---cceEEEeeccCcccccccceeEEeeccccchHHH
Confidence 366665 5554 6789999999999999999998765 257 8899999876432 234567666655554332
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 158 ~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 158 EILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcccCceEEEEee
Confidence 356789999999998753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.69 E-value=8.7e-08 Score=74.57 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=68.4
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH---
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP--- 76 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~--- 76 (156)
.|.+++ +|+..| .+|++++++++.++.|+++.+. .|+.++ +++...|... ..++||+|++-.+..+++
T Consensus 72 ~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~-~~l~~~--v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~ 143 (291)
T d1kpia_ 72 WGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDE-VDSPRR--KEVRIQGWEE---FDEPVDRIVSLGAFEHFADGA 143 (291)
T ss_dssp TSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHH-SCCSSC--EEEEECCGGG---CCCCCSEEEEESCGGGTTCCS
T ss_pred chHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHh-hccchh--hhhhhhcccc---cccccceEeechhHHhcchhh
Confidence 366775 566665 7999999999999999999998 588665 8888888542 247899999988877653
Q ss_pred ------------HHHHhhCCCCcEEEEEec
Q psy14971 77 ------------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ------------~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 144 ~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 144 GDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp SCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 346799999999998653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.68 E-value=4.7e-08 Score=72.60 Aligned_cols=85 Identities=18% Similarity=0.022 Sum_probs=63.6
Q ss_pred chHH-HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC---CCCcCEEEEccCCCchH-
Q psy14971 2 GDLN-VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE---EGPYDIIHLGAACIEVP- 76 (156)
Q Consensus 2 G~la-~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~---~~~fD~I~i~~~~~~i~- 76 (156)
|.++ .+|.+++ .++|+|+|++++|++.|+++.+. . .| +.++.+|+...... ...+|.|+.+...+..+
T Consensus 68 G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~-~--~n---i~~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~ 140 (209)
T d1nt2a_ 68 GTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-R--NN---IIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIE 140 (209)
T ss_dssp SHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-C--SS---EEEECSCTTCGGGTTTTCCCEEEEEECCCSTTHHH
T ss_pred CHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhc-c--CC---ceEEEeeccCccccccccceEEEEEecccChhhHH
Confidence 5555 4677875 58999999999999999999887 3 47 99999998764222 23466776665555433
Q ss_pred ---HHHHhhCCCCcEEEEEe
Q psy14971 77 ---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 141 ~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 141 ILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEE
Confidence 35678999999999875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.66 E-value=1.7e-08 Score=76.85 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=65.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH---
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK--- 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~--- 77 (156)
|.++. ++.... ..|+++|.+++|++.|++++.. ..+ ++++++|+.+.......||+|++.....++++
T Consensus 105 G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~---~~~---~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~d~ 176 (254)
T d1xtpa_ 105 GRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG---MPV---GKFILASMETATLPPNTYDLIVIQWTAIYLTDADF 176 (254)
T ss_dssp THHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT---SSE---EEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHH
T ss_pred ChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc---ccc---ceeEEccccccccCCCccceEEeeccccccchhhh
Confidence 55553 333322 5899999999999999998865 245 89999998765445678999999999887753
Q ss_pred -----HHHhhCCCCcEEEEEec
Q psy14971 78 -----EILAQLKPGGRLVFHKG 94 (156)
Q Consensus 78 -----~l~~~L~pGGrLv~~~~ 94 (156)
.+.+.|+|||++++...
T Consensus 177 ~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 177 VKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEec
Confidence 45788999999998543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.66 E-value=6.7e-08 Score=74.72 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=65.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|.++. +++..| .+|+++|+++++++.|++++++ .|+.+. +.+...|..+. .++||+|++-.+..+++
T Consensus 64 G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~-~~l~~~--~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~ 135 (280)
T d2fk8a1 64 GTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLAS-IDTNRS--RQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENY 135 (280)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-SCCSSC--EEEEESCGGGC---CCCCSEEEEESCGGGTCGGGH
T ss_pred hHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHh-hccccc--hhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhH
Confidence 66665 444555 6999999999999999999998 487543 78888775432 36899999998877653
Q ss_pred ----HHHHhhCCCCcEEEEEe
Q psy14971 77 ----KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~ 93 (156)
..+.+.|||||++++..
T Consensus 136 ~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 136 DDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCceEEEEE
Confidence 35678999999999964
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.63 E-value=8.7e-08 Score=72.90 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=67.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++.......|..+++++|+ +++++.|+++++. .+..++ ++++.+|..+..+ ..||+|++...+++.++
T Consensus 93 G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~-~~~~~r--i~~~~~d~~~~~p--~~~D~v~~~~vLh~~~d~~~~ 166 (256)
T d1qzza2 93 GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD-AGLADR--VTVAEGDFFKPLP--VTADVVLLSFVLLNWSDEDAL 166 (256)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTT--EEEEECCTTSCCS--CCEEEEEEESCGGGSCHHHHH
T ss_pred CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh-cCCcce--eeeeeeecccccc--ccchhhhccccccccCcHHHH
Confidence 556654444467789999997 8999999999988 477554 9999999876544 35999999998876653
Q ss_pred ----HHHhhCCCCcEEEEEe
Q psy14971 78 ----EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~ 93 (156)
.+.+.|||||+|++..
T Consensus 167 ~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 167 TILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhcCCcceeEEEE
Confidence 4678899999999864
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.60 E-value=3.8e-08 Score=70.18 Aligned_cols=87 Identities=10% Similarity=-0.083 Sum_probs=64.0
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC------------CCccceEEEEccCCCCCCC-CCCcCEEEE
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ------------NRKSFKNVSVKDGSKGHAE-EGPYDIIHL 68 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~------------~n~~~v~~~~gD~~~~~~~-~~~fD~I~i 68 (156)
|..++..... +.+|+|+|++++|++.|+++.+.. +. .+ ++++.+|..+..+. ...||.|+.
T Consensus 32 G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~~~~~D~i~~ 105 (201)
T d1pjza_ 32 SQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQ-PHITSQGDFKVYAAPG---IEIWCGDFFALTARDIGHCAAFYD 105 (201)
T ss_dssp SHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSC-SEEEEETTEEEEECSS---SEEEEECCSSSTHHHHHSEEEEEE
T ss_pred CHHHHHHHHc--CCceEeecccHHHHHHHHHHhccc-cchhhhhhhhhccccc---cceecccccccccccccceeEEEE
Confidence 6666543333 479999999999999999998642 21 23 68899998764432 467999999
Q ss_pred ccCCCchH--------HHHHhhCCCCcEEEEEec
Q psy14971 69 GAACIEVP--------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 69 ~~~~~~i~--------~~l~~~L~pGGrLv~~~~ 94 (156)
......++ ..+.+.|||||++++...
T Consensus 106 ~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 106 RAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred EeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 88877654 346789999999877543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.9e-08 Score=75.19 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=60.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--CCCCCcCEEEEccCCC-----
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--AEEGPYDIIHLGAACI----- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--~~~~~fD~I~i~~~~~----- 73 (156)
+|.++......+ ..+|++||+++++++.|+++.+. .+ .+ +.++.+|+.... ...++||.|+.+....
T Consensus 64 ~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~-~~-~~---~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~ 137 (229)
T d1zx0a1 64 MAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPR-QT-HK---VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETW 137 (229)
T ss_dssp TSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGG-CS-SE---EEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGT
T ss_pred chHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhh-cc-cc---cccccccccccccccccccccceeecccccccccc
Confidence 466664322223 26899999999999999999887 24 34 788888764321 2347899999876543
Q ss_pred chH------HHHHhhCCCCcEEEEE
Q psy14971 74 EVP------KEILAQLKPGGRLVFH 92 (156)
Q Consensus 74 ~i~------~~l~~~L~pGGrLv~~ 92 (156)
+++ ..+.+.|||||+|++.
T Consensus 138 ~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 138 HTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp TTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccCHHHHHHHHHHHcCCCcEEEEE
Confidence 222 3467899999999874
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=3.7e-08 Score=72.88 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=57.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC-CCchH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA-CIEVP---- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~-~~~i~---- 76 (156)
|.++....-. +.+|+|+|++++|++.|+++.. .+ ++.+|+.+...+.+.||+|++.+. .++++
T Consensus 54 G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~-----~~-----~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~ 121 (246)
T d2avna1 54 GKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----KN-----VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK 121 (246)
T ss_dssp CHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----SC-----EEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred chhccccccc--ceEEEEeecccccccccccccc-----cc-----cccccccccccccccccceeeecchhhhhhhHHH
Confidence 5555433222 4799999999999999997632 22 567888764334578999998654 44433
Q ss_pred --HHHHhhCCCCcEEEEEec
Q psy14971 77 --KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++.+.
T Consensus 122 ~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 122 AFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhhcCcCcEEEEEEC
Confidence 357789999999999653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.60 E-value=1.9e-07 Score=72.35 Aligned_cols=85 Identities=18% Similarity=0.029 Sum_probs=67.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH----
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP---- 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~---- 76 (156)
|-+++ +|+..| ++|++|.++++.++.|+++.++ .|+.++ +++..+|..+. .++||+|++-.+..++.
T Consensus 74 G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~-~g~~~~--v~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~ 145 (285)
T d1kpga_ 74 GATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVAN-SENLRS--KRVLLAGWEQF---DEPVDRIVSIGAFEHFGHERY 145 (285)
T ss_dssp SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHT-CCCCSC--EEEEESCGGGC---CCCCSEEEEESCGGGTCTTTH
T ss_pred hHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHh-hhhhhh--hHHHHhhhhcc---cccccceeeehhhhhcCchhH
Confidence 56665 566665 7999999999999999999888 476544 99999997542 36899999988876652
Q ss_pred ----HHHHhhCCCCcEEEEEec
Q psy14971 77 ----KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ----~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|||||++++...
T Consensus 146 ~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 146 DAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHhhcCCCCcEEEEEE
Confidence 356789999999998543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.57 E-value=5e-08 Score=72.40 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=61.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.++... ...+.+|+++|+++++++.|+++.. +| ++++.+|..+... ...||.|++....+++++
T Consensus 32 G~~~~~l--~~~g~~v~giD~s~~~i~~a~~~~~-----~~---~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~d~~~~ 100 (225)
T d2p7ia1 32 GDFTSRL--QEHFNDITCVEASEEAISHAQGRLK-----DG---ITYIHSRFEDAQL-PRRYDNIVLTHVLEHIDDPVAL 100 (225)
T ss_dssp SHHHHHH--TTTCSCEEEEESCHHHHHHHHHHSC-----SC---EEEEESCGGGCCC-SSCEEEEEEESCGGGCSSHHHH
T ss_pred cHHHHHH--HHcCCeEEEEeCcHHHhhhhhcccc-----cc---ccccccccccccc-ccccccccccceeEecCCHHHH
Confidence 5454433 2224689999999999999997753 36 9999999866433 478999999998877652
Q ss_pred --HHH-hhCCCCcEEEEEec
Q psy14971 78 --EIL-AQLKPGGRLVFHKG 94 (156)
Q Consensus 78 --~l~-~~L~pGGrLv~~~~ 94 (156)
.+. +.|+|||++++.+.
T Consensus 101 l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 101 LKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp HHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCceEEEEeC
Confidence 344 57999999999764
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1.3e-07 Score=74.24 Aligned_cols=85 Identities=16% Similarity=0.045 Sum_probs=63.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
+|.|+++|...|. .+|+++|.++ +++.|+++.+.+ +..++ ++++.+|..+.......||.|++..... ..
T Consensus 49 tG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~-~~~~~--i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~ 123 (328)
T d1g6q1_ 49 TGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELN-GFSDK--ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESM 123 (328)
T ss_dssp TSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHT-TCTTT--EEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCC
T ss_pred CCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHh-Ccccc--ceEEEeehhhccCcccceeEEEEEecceeeccchh
Confidence 4789988887774 5999999985 778999988874 66443 9999999887544457899999865432 12
Q ss_pred H----HHHHhhCCCCcEEE
Q psy14971 76 P----KEILAQLKPGGRLV 90 (156)
Q Consensus 76 ~----~~l~~~L~pGGrLv 90 (156)
. ....+.|||||+++
T Consensus 124 ~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 124 MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp HHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEE
Confidence 2 23457899999885
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=1.2e-07 Score=74.07 Aligned_cols=86 Identities=15% Similarity=0.005 Sum_probs=64.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------ 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------ 74 (156)
+|.++++|...|+ .+|+++|.++. ...|+++.+.+ ++.++ |+++.+|..+......+||.|++......
T Consensus 44 ~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n-~~~~~--v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~ 118 (316)
T d1oria_ 44 TGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKAN-KLDHV--VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESM 118 (316)
T ss_dssp TSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHT-TCTTT--EEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCC
T ss_pred CcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHh-CCccc--cceEeccHHHcccccceeEEEeeeeeeeeeccHHH
Confidence 4889988887775 58999999975 57788887774 66444 99999998875444578999998654321
Q ss_pred hH---HHHHhhCCCCcEEEE
Q psy14971 75 VP---KEILAQLKPGGRLVF 91 (156)
Q Consensus 75 i~---~~l~~~L~pGGrLv~ 91 (156)
++ ..+.+.|||||+++-
T Consensus 119 ~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 119 LNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp HHHHHHHHHHHEEEEEEEES
T ss_pred HHHHHHHHHhcCCCCeEEEe
Confidence 22 345689999999863
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=3e-07 Score=70.90 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=67.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC----c--
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI----E-- 74 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~----~-- 74 (156)
|.+++.+.. .+.++|+++|++++.++.|++|.+++ ++.++ +.+..+|..+..+. .+.||.|+++-+.- .
T Consensus 122 G~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~-~~~~~--~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~ 197 (271)
T d1nv8a_ 122 GAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERH-GVSDR--FFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLP 197 (271)
T ss_dssp SHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHT-TCTTS--EEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCT
T ss_pred ehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHc-CCCce--eEEeecccccccccccCcccEEEEcccccCcccccc
Confidence 555555443 46799999999999999999999994 88665 88889998776554 36899999997521 0
Q ss_pred -----hH---------------HHHHhhCCCCcEEEEEecc
Q psy14971 75 -----VP---------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 75 -----i~---------------~~l~~~L~pGGrLv~~~~~ 95 (156)
-| ..+.+.|+|||.+++-++.
T Consensus 198 ~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 198 KDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp TSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred eeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 11 1245679999999998874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=7.4e-08 Score=69.95 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=68.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCc--hH-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIE--VP- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~--i~- 76 (156)
+|.+++-|...|. .+|+.||.+++.++.+++|++. ++..+ ++++.+|+..-+. ...+||.||++.+... +.
T Consensus 54 sG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~-~~~~~---~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~~~~~ 128 (183)
T d2fpoa1 54 SGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLAT-LKAGN---ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEE 128 (183)
T ss_dssp TCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH-TTCCS---EEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHH
T ss_pred ccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhh-ccccc---eeeeeecccccccccccccCEEEEcCccccchHHH
Confidence 4778887766665 6999999999999999999998 58888 9999999865332 3468999999987543 22
Q ss_pred --HHHH--hhCCCCcEEEEEec
Q psy14971 77 --KEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~--~~L~pGGrLv~~~~ 94 (156)
+.+. ..|+++|.+++-..
T Consensus 129 ~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 129 TINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHCCCCCCCeEEEEEec
Confidence 2333 35899999998643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=8.9e-08 Score=69.67 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=57.3
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH------HHHHhhCCCCcE
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP------KEILAQLKPGGR 88 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~------~~l~~~L~pGGr 88 (156)
.+++++|.++++++.|+++ + ++++++|+.+.......||+|++....++++ ..+.+.|+|||+
T Consensus 55 ~~~~giD~s~~~~~~a~~~--------~---~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~ 123 (208)
T d1vlma_ 55 KIKIGVEPSERMAEIARKR--------G---VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGY 123 (208)
T ss_dssp TCCEEEESCHHHHHHHHHT--------T---CEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEE
T ss_pred ceEEEEeCChhhccccccc--------c---cccccccccccccccccccccccccccccccccccchhhhhhcCCCCce
Confidence 3679999999999998853 4 8899999876544567899999999988765 357899999999
Q ss_pred EEEEecc
Q psy14971 89 LVFHKGL 95 (156)
Q Consensus 89 Lv~~~~~ 95 (156)
|++....
T Consensus 124 l~i~~~~ 130 (208)
T d1vlma_ 124 LIVGIVD 130 (208)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9997653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.1e-08 Score=71.20 Aligned_cols=88 Identities=9% Similarity=-0.040 Sum_probs=63.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh----------------cCCCCccceEEEEccCCCCCC-CCCCcC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN----------------IKQNRKSFKNVSVKDGSKGHA-EEGPYD 64 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~----------------~g~~n~~~v~~~~gD~~~~~~-~~~~fD 64 (156)
|..+......| .+|+|||+++++++.|+++.... ....+ ++++++|..+..+ ..+.||
T Consensus 57 G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~d~~~l~~~~~~~fd 131 (229)
T d2bzga1 57 AVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN---ISLYCCSIFDLPRTNIGKFD 131 (229)
T ss_dssp CTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS---EEEEESCGGGGGGSCCCCEE
T ss_pred cHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc---EEEEEcchhhccccccCcee
Confidence 45554433333 69999999999999999886531 00135 8999999876433 357899
Q ss_pred EEEEccCCCchH--------HHHHhhCCCCcEEEEEec
Q psy14971 65 IIHLGAACIEVP--------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 65 ~I~i~~~~~~i~--------~~l~~~L~pGGrLv~~~~ 94 (156)
+|+..+....++ ..+.+.|||||++++..-
T Consensus 132 ~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 132 MIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 999998877653 357899999999877653
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.6e-07 Score=71.74 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=61.7
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC-----ch
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI-----EV 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~-----~i 75 (156)
+|.|+++|...|+ .+|+++|.++.+.. |+++.+.+ +..++ ++++.+|..+......+||.|++..... ..
T Consensus 46 ~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~-~~~~~--i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~ 120 (311)
T d2fyta1 46 TGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLN-KLEDT--ITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120 (311)
T ss_dssp TSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHT-TCTTT--EEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCH
T ss_pred CCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHh-CCCcc--ceEEEeeHHHhcCccccceEEEEeeeeeecccccc
Confidence 5889998888775 69999999998764 55555553 54333 9999999987544457899999864433 22
Q ss_pred HH----HHHhhCCCCcEEEE
Q psy14971 76 PK----EILAQLKPGGRLVF 91 (156)
Q Consensus 76 ~~----~l~~~L~pGGrLv~ 91 (156)
++ ...+.|||||+++-
T Consensus 121 ~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 121 LDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp HHHHHHHHHHHEEEEEEEES
T ss_pred cHHHHHHHHhcCCCCcEEec
Confidence 22 33568999999863
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.46 E-value=1e-07 Score=74.90 Aligned_cols=88 Identities=18% Similarity=0.149 Sum_probs=63.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCC-ccceEEEEccCCCCCC----CCCCcCEEEEccCCC--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNR-KSFKNVSVKDGSKGHA----EEGPYDIIHLGAACI-- 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n-~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~-- 73 (156)
.|-+++.|..-| ++|++||.++..++.|++|++.+ |+++ + ++++++|+.+.+. ....||.|+++.+.-
T Consensus 143 tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln-~~~~~~--~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~ 217 (309)
T d2igta1 143 TGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLA-GLEQAP--IRWICEDAMKFIQREERRGSTYDIILTDPPKFGR 217 (309)
T ss_dssp TCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHH-TCTTSC--EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEE
T ss_pred CcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhh-cccCCc--EEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccc
Confidence 366777665544 68999999999999999999986 6532 2 8999999865332 246899999986631
Q ss_pred -------ch----H---HHHHhhCCCCcEEEEEe
Q psy14971 74 -------EV----P---KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 74 -------~i----~---~~l~~~L~pGGrLv~~~ 93 (156)
.+ + ..+..+|+|||.+++..
T Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 218 GTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 11 1 23467899998755544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1.3e-07 Score=73.25 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=66.7
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCch-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIEV----- 75 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~i----- 75 (156)
|..+.|+++. ..++|+++|+++..++..++++++ +|+++ +.+...|..... .....||+|+++++|+..
T Consensus 115 gKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r-~g~~~---~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr 189 (284)
T d1sqga2 115 GKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKR-LGMKA---TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRR 189 (284)
T ss_dssp HHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHH-TTCCC---EEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTT
T ss_pred cchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhc-ccccc---eeeeccccccchhcccccccEEEEeccccccCcccc
Confidence 4556677764 459999999999999999999999 69887 766665543211 224579999999999632
Q ss_pred -H----------------------HHHHhhCCCCcEEEEEecc
Q psy14971 76 -P----------------------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 -~----------------------~~l~~~L~pGGrLv~~~~~ 95 (156)
| ....+.|||||+||..+++
T Consensus 190 ~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 190 HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 1 1235679999999998873
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=2.2e-07 Score=68.18 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=65.0
Q ss_pred HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-----CCCCCcCEEEEccCCCch---
Q psy14971 4 LNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-----AEEGPYDIIHLGAACIEV--- 75 (156)
Q Consensus 4 la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-----~~~~~fD~I~i~~~~~~i--- 75 (156)
...+++.. |+++|+++|+++++++.|+++++. ++ .+ +++++++..+.. ....+||.|+.+.+++..
T Consensus 38 s~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~-~~-~r---~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld 111 (192)
T d1m6ya2 38 SRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKE-FS-DR---VSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLK 111 (192)
T ss_dssp HHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGG-GT-TT---EEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHH
T ss_pred HHHHHhcC-CCCeEEEeechHHHHHHHHHhhcc-cc-cc---ccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhh
Confidence 33566666 579999999999999999999988 45 46 999999865421 113689999999888532
Q ss_pred ------------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ------------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ------------~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.|+|||++++..-
T Consensus 112 ~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 112 GENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp TSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred hhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 1345789999999998654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.8e-07 Score=73.64 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=61.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh------cC--CCCccceEEEEccCCCCCCCCC--CcCEEEEcc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN------IK--QNRKSFKNVSVKDGSKGHAEEG--PYDIIHLGA 70 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~------~g--~~n~~~v~~~~gD~~~~~~~~~--~fD~I~i~~ 70 (156)
.|.+++.+....+..+|+|+|+++++++.|+++++.. +| ..+ +++++||+.+...... ..|+|+++.
T Consensus 162 ~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~---i~~~~gd~~~~~~~~~~~~advi~~~~ 238 (328)
T d1nw3a_ 162 VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE---YTLERGDFLSEEWRERIANTSVIFVNN 238 (328)
T ss_dssp TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC---EEEEECCTTSHHHHHHHHHCSEEEECC
T ss_pred CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc---eEEEECcccccccccccCcceEEEEcc
Confidence 3677765545455579999999999999999876542 12 346 9999999875311111 247888865
Q ss_pred CCC--chH---HHHHhhCCCCcEEEEE
Q psy14971 71 ACI--EVP---KEILAQLKPGGRLVFH 92 (156)
Q Consensus 71 ~~~--~i~---~~l~~~L~pGGrLv~~ 92 (156)
-.. ++. ..+.+.|||||++|+.
T Consensus 239 ~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 239 FAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred eecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 442 122 3567889999999974
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.39 E-value=1.3e-07 Score=68.69 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=67.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCC--c
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACI--E 74 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~--~ 74 (156)
+|.+++.|..-|. .+|+.+|.+++.++.+++|++. ++..++ ++++++|+...+. ...+||.||++.+.. .
T Consensus 52 sG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~-~~~~~~--~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~ 127 (182)
T d2fhpa1 52 SGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAI-TKEPEK--FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE 127 (182)
T ss_dssp TCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHH-HTCGGG--EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC
T ss_pred cccccceeeecch-hHHHHHHHHHHHHHHHHHHhhh-hhcccc--cccccccchhhhhhhcccCCCcceEEechhhhhhH
Confidence 4777887766664 6899999999999999999998 476533 9999999865322 345899999998753 2
Q ss_pred hH---HHHH--hhCCCCcEEEEEec
Q psy14971 75 VP---KEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 75 i~---~~l~--~~L~pGGrLv~~~~ 94 (156)
+. +.+. ..|+++|.+++-..
T Consensus 128 ~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 128 IVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22 3343 35899999887543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=8.1e-08 Score=69.06 Aligned_cols=89 Identities=10% Similarity=0.150 Sum_probs=60.0
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC--CCCCCCCcCEEEEccCCC-chH-
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK--GHAEEGPYDIIHLGAACI-EVP- 76 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~--~~~~~~~fD~I~i~~~~~-~i~- 76 (156)
.|.+++.|...| ++|+++|+++++++.+++|++.+ ++.++ +....+|... ......+||.||++.+.. ...
T Consensus 52 ~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~-~~~~~--v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~~~ 126 (171)
T d1ws6a1 52 SGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRT-GLGAR--VVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAA 126 (171)
T ss_dssp SCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHH-TCCCE--EECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTH
T ss_pred cchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhh-ccccc--eeeeehhcccccccccCCccceeEEccccccCHHH
Confidence 366777665554 68999999999999999999994 87542 4444444321 112346799999987643 222
Q ss_pred --HHHH--hhCCCCcEEEEEec
Q psy14971 77 --KEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 77 --~~l~--~~L~pGGrLv~~~~ 94 (156)
..+. ..|+|||++++-..
T Consensus 127 ~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 127 LFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHHHcCCcCCCeEEEEEec
Confidence 2332 36899999888654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=5.7e-07 Score=70.49 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCCEEEEEeCCHHHHHHHHHHHhhh----cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCC---c---------
Q psy14971 12 GERALVLILNHYMKVKSKNQNNKKLN----IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACI---E--------- 74 (156)
Q Consensus 12 g~~g~V~avD~~~~~~~~A~~~l~~~----~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~---~--------- 74 (156)
.+..+|+.+|+++++++.|++.+... +.-++ ++++.+|+.+-+.. ...||+|+++..-+ .
T Consensus 99 ~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~r---v~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~ 175 (312)
T d1uira_ 99 PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR---AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTV 175 (312)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTT---EEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSH
T ss_pred CCcceEEEecCCHHHHHHHHhcCcccccCccCCCc---eEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhH
Confidence 45679999999999999999988541 11234 99999999764332 46799999987422 1
Q ss_pred -hHHHHHhhCCCCcEEEEEec
Q psy14971 75 -VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 -i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-+.+.+.|+|||.+++..+
T Consensus 176 eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 176 EFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEecC
Confidence 11457899999999998664
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.19 E-value=2.4e-06 Score=65.35 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=57.2
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCC----CccceEEEEccCCC---CCCCCCCcCEEEEccC-C
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQN----RKSFKNVSVKDGSK---GHAEEGPYDIIHLGAA-C 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~----n~~~v~~~~gD~~~---~~~~~~~fD~I~i~~~-~ 72 (156)
+|.++......| .+|+|+|++++|++.|+++.... +.. + ..+..+|... ..+....||.|++... .
T Consensus 67 ~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~ 140 (292)
T d1xvaa_ 67 TGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNR-RKEPAFDK---WVIEEANWLTLDKDVPAGDGFDAVICLGNSF 140 (292)
T ss_dssp TSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-TTSHHHHT---CEEEECCGGGHHHHSCCTTCEEEEEECSSCG
T ss_pred CcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhc-ccccccce---eeeeeccccccccccCCCCCceEEEEecCch
Confidence 366665433333 69999999999999999998763 431 2 3344444321 1233467999997653 3
Q ss_pred Cch-------------HHHHHhhCCCCcEEEEEe
Q psy14971 73 IEV-------------PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 73 ~~i-------------~~~l~~~L~pGGrLv~~~ 93 (156)
.++ ...+.+.|||||+|++.+
T Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 332 246789999999999964
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1.3e-06 Score=67.27 Aligned_cols=90 Identities=24% Similarity=0.205 Sum_probs=64.9
Q ss_pred chHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc-
Q psy14971 2 GDLNVIVGIK--GERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE- 74 (156)
Q Consensus 2 G~la~la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~- 74 (156)
|+-+.+..++ .+..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+.+-+.. ...||+|+++..-+.
T Consensus 85 G~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r---~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~ 161 (274)
T d1iy9a_ 85 GDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPR---VDVQVDDGFMHIAKSENQYDVIMVDSTEPVG 161 (274)
T ss_dssp TTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTT---EEEEESCSHHHHHTCCSCEEEEEESCSSCCS
T ss_pred CCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCC---eEEEechHHHHHhhcCCCCCEEEEcCCCCCC
Confidence 4444554444 24579999999999999999987542 12234 99999998753332 467999999976532
Q ss_pred ---------hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ---------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ---------i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-+.+.+.|+|||.+++..+
T Consensus 162 ~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 162 PAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp CCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred cchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 12467889999999999765
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1.1e-06 Score=68.40 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=58.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC-CCCcCEEEEccCCCc-hH----------H
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE-EGPYDIIHLGAACIE-VP----------K 77 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~~~~~-i~----------~ 77 (156)
+..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+.+-+.. ...||+|+++..-+. .+ +
T Consensus 112 ~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~r---v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~ 188 (295)
T d1inla_ 112 SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPR---AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQ 188 (295)
T ss_dssp TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTT---EEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHH
T ss_pred CCceEEEecCCHHHHHHHHHHHHhhcccccCCC---cEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHH
Confidence 4578999999999999999987542 12234 99999999764433 467999999875432 11 3
Q ss_pred HHHhhCCCCcEEEEEecc
Q psy14971 78 EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|+|||++++..+.
T Consensus 189 ~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 189 ACYDALKEDGVFSAETED 206 (295)
T ss_dssp HHHHHEEEEEEEEEECCC
T ss_pred HHHhhcCCCcEEEEecCC
Confidence 568899999999997653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.16 E-value=8.4e-07 Score=68.32 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=59.2
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh---------cCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch--------
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN---------IKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV-------- 75 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~---------~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i-------- 75 (156)
+..+|+.+|+|+++++.|++.+... ..-++ ++++.+|+.+-+.....||+|+++..-+.-
T Consensus 94 ~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~r---v~i~~~Da~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~ 170 (276)
T d1mjfa_ 94 DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK---AKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSE 170 (276)
T ss_dssp CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSS---EEEEESCHHHHHHHCCCEEEEEEECCCCC-----TTSH
T ss_pred CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCC---ceEEEChHHHHHhccCCCCEEEEeCCCCCCCcccccCH
Confidence 4568999999999999999876421 01134 999999987544445789999998865421
Q ss_pred --HHHHHhhCCCCcEEEEEec
Q psy14971 76 --PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 --~~~l~~~L~pGGrLv~~~~ 94 (156)
-+.+.+.|+|||.+++..+
T Consensus 171 eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 171 EFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHhhHhhcCCCceEEEecC
Confidence 1357889999999998764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.13 E-value=5.1e-06 Score=60.84 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=51.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI 73 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~ 73 (156)
.|.+++.|...|. .+|+++|+++++++.|++|++. .+. + .+++.+|..+. ..+||+|+++.+..
T Consensus 57 tG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~-~~~-~---~~~~~~d~~~~---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 57 TGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGE-FKG-K---FKVFIGDVSEF---NSRVDIVIMNPPFG 120 (201)
T ss_dssp TCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGG-GTT-S---EEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred chHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHH-cCC-C---ceEEECchhhh---CCcCcEEEEcCccc
Confidence 3777776666654 6999999999999999999998 475 5 78999997652 46799999998763
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.3e-06 Score=67.57 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=63.4
Q ss_pred chHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCch
Q psy14971 2 GDLNVIVGIK--GERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~la~l~--g~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i 75 (156)
|.-+++.+++ .+..+|+.+|+++++++.|++.+..+ +.-++ ++++.+|+.+-+. ....||+|+++..-+.-
T Consensus 88 G~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~r---v~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~ 164 (285)
T d2o07a1 88 GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSK---LTLHVGDGFEFMKQNQDAFDVIITDSSDPMG 164 (285)
T ss_dssp TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT---EEEEESCHHHHHHTCSSCEEEEEEECC----
T ss_pred CchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCC---ceEEEccHHHHHhcCCCCCCEEEEcCCCCCC
Confidence 3334444443 23579999999999999999987542 22234 9999999876433 24679999999754321
Q ss_pred ----------HHHHHhhCCCCcEEEEEecc
Q psy14971 76 ----------PKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 76 ----------~~~l~~~L~pGGrLv~~~~~ 95 (156)
-+.+.+.|+|||.+++..+.
T Consensus 165 ~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 165 PAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp -------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 23568899999999997653
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.11 E-value=2e-06 Score=66.70 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=60.4
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCCC--CCCcCEEEEccCCCch----------HH
Q psy14971 13 ERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHAE--EGPYDIIHLGAACIEV----------PK 77 (156)
Q Consensus 13 ~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~~--~~~fD~I~i~~~~~~i----------~~ 77 (156)
+..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+.+-... ...||.|+++..-+.- -+
T Consensus 103 ~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r---~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~ 179 (290)
T d1xj5a_ 103 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPR---VNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQ 179 (290)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTT---EEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHH
T ss_pred cceeeEEecCCHHHHHHHHHhchhhhccccCCC---cEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHH
Confidence 3468999999999999999977432 12245 99999998764422 3579999998865421 14
Q ss_pred HHHhhCCCCcEEEEEecc
Q psy14971 78 EILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~~~~ 95 (156)
.+.+.|+|||.+++..+.
T Consensus 180 ~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 180 SVARALRPGGVVCTQAES 197 (290)
T ss_dssp HHHHHEEEEEEEEEECCC
T ss_pred HHHHhcCCCcEEEEecCC
Confidence 578899999999998753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=6.1e-06 Score=62.46 Aligned_cols=79 Identities=10% Similarity=-0.007 Sum_probs=56.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--C------CCCCCCCcCEEEEccCCCchH------HHH
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--K------GHAEEGPYDIIHLGAACIEVP------KEI 79 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~------~~~~~~~fD~I~i~~~~~~i~------~~l 79 (156)
...++++|.++.|++.|+++++..-...+ +.+...+.. + ......+||+|++..+.++++ ..+
T Consensus 70 ~~~~~~vD~s~~~l~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l 146 (280)
T d1jqea_ 70 CINNEVVEPSAEQIAKYKELVAKISNLEN---VKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFF 146 (280)
T ss_dssp EEEEEEECCCHHHHHHHHHHHTTCCSCTT---EEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred ceEEEEEeCcHHHHHHHHHHHhhcccccc---ccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHH
Confidence 45789999999999999999876212344 555433321 0 112347899999999887664 357
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
.++|+|||.|++....
T Consensus 147 ~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 147 HSLLGTNAKMLIIVVS 162 (280)
T ss_dssp HHTEEEEEEEEEEEEC
T ss_pred HhhCCCCCEEEEEEec
Confidence 8999999999987653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.04 E-value=1.2e-06 Score=68.58 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=63.2
Q ss_pred chHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhhh---cCCCCccceEEEEccCCCCCC-CCCCcCEEEEccCCCch
Q psy14971 2 GDLNVIVGIKG--ERALVLILNHYMKVKSKNQNNKKLN---IKQNRKSFKNVSVKDGSKGHA-EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~la~l~g--~~g~V~avD~~~~~~~~A~~~l~~~---~g~~n~~~v~~~~gD~~~~~~-~~~~fD~I~i~~~~~~i 75 (156)
|+-+++.+++. +..+|+.+|+|+++++.|++.+... +.-++ ++++.+|+.+-+. ....||+|+++..-+.-
T Consensus 116 G~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dpr---v~i~i~Da~~~l~~~~~~yDvII~D~~dp~~ 192 (312)
T d2b2ca1 116 GDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPK---LDLFCGDGFEFLKNHKNEFDVIITDSSDPVG 192 (312)
T ss_dssp TTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTT---EEEECSCHHHHHHHCTTCEEEEEECCC----
T ss_pred CchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCC---eEEEEchHHHHHHhCCCCCCEEEEcCCCCCC
Confidence 44445544443 3479999999999999999987542 12234 9999999976433 24679999999865422
Q ss_pred H----------HHHHhhCCCCcEEEEEec
Q psy14971 76 P----------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~----------~~l~~~L~pGGrLv~~~~ 94 (156)
+ +.+.+.|+|||.+++-.+
T Consensus 193 ~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 193 PAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp ---------HHHHHHHHEEEEEEEEEECC
T ss_pred cchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 1 356789999999999764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.7e-05 Score=59.93 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=50.9
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC------CCCCcCEEEEccCC
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA------EEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~------~~~~fD~I~i~~~~ 72 (156)
|.++++....-+..+|+++|++++.++.|++|++.+ ++.++ +.++..+...... ..+.||.|+++.+.
T Consensus 73 g~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY 146 (250)
T d2h00a1 73 SCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDL--IKVVKVPQKTLLMDALKEESEIIYDFCMCNPPF 146 (250)
T ss_dssp TTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-TCTTT--EEEEECCTTCSSTTTSTTCCSCCBSEEEECCCC
T ss_pred hHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh-CCCcc--eeeeeeccHHhhhhhhhhcccCceeEEEecCcc
Confidence 666654333335689999999999999999999995 87665 8888876543221 24579999999865
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.3e-06 Score=65.02 Aligned_cols=80 Identities=18% Similarity=0.009 Sum_probs=52.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCCCc--------------------------cce-EEEEccCC----CCCCCCCCc
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQNRK--------------------------SFK-NVSVKDGS----KGHAEEGPY 63 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~n~--------------------------~~v-~~~~gD~~----~~~~~~~~f 63 (156)
.+|+++|+++.+++.|+++++.. +.... ..+ .....+.. ......+.|
T Consensus 75 ~~v~giD~S~~~i~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 153 (257)
T d2a14a1 75 QDITLSDFTDRNREELEKWLKKE-PGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLA 153 (257)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTC-TTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCE
T ss_pred CcEEEecCCHHHHHHHHHHHhhc-cccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcc
Confidence 37999999999999999998752 22110 001 11222211 111235689
Q ss_pred CEEEEccCCCchH----------HHHHhhCCCCcEEEEEecc
Q psy14971 64 DIIHLGAACIEVP----------KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 64 D~I~i~~~~~~i~----------~~l~~~L~pGGrLv~~~~~ 95 (156)
|+|++....+.++ +.+.+.|||||+|++....
T Consensus 154 D~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 154 DCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp EEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred cEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 9999988776543 3578999999999996643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.93 E-value=2.9e-05 Score=55.77 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=65.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC---CCCCCCcCEEEEccCCCch--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG---HAEEGPYDIIHLGAACIEV-- 75 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~---~~~~~~fD~I~i~~~~~~i-- 75 (156)
+|.+++.|..-|. .+|+.||.+.+.++..++|++. ++..+. ...++..|+.+. .....+||.||+|.+...-
T Consensus 54 sG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~-l~~~~~-~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~~~ 130 (183)
T d2ifta1 54 SGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQT-LKCSSE-QAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLA 130 (183)
T ss_dssp TCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH-TTCCTT-TEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHH
T ss_pred ccceeeeeeeecc-eeeEEeecccchhhhHhhHHhh-hccccc-ccccccccccccccccccCCcccEEEechhHhhhhH
Confidence 4778888877675 6999999999999999999998 576331 166666665332 2234579999999987542
Q ss_pred H---HHHH--hhCCCCcEEEEEec
Q psy14971 76 P---KEIL--AQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~---~~l~--~~L~pGGrLv~~~~ 94 (156)
. +.+. ..|+++|.+++-..
T Consensus 131 ~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 131 EQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCcCCCcEEEEEec
Confidence 2 2332 46899999998654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.90 E-value=1.1e-05 Score=59.14 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=48.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
.|.|++.+...|+ .+|+++|+++++++.|++|++ + +.++.+|..+. .++||.|+++.+.
T Consensus 59 tG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~------~---~~~~~~D~~~l---~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 59 NGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCG------G---VNFMVADVSEI---SGKYDTWIMNPPF 117 (197)
T ss_dssp TCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCT------T---SEEEECCGGGC---CCCEEEEEECCCC
T ss_pred CcHHHHHHHHcCC-CcccccccCHHHHHHHHHccc------c---ccEEEEehhhc---CCcceEEEeCccc
Confidence 4888887777775 689999999999999999864 3 77899998652 3679999998764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=7.5e-05 Score=58.30 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC----CCCcCEEEEccCCCchHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE----EGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~----~~~fD~I~i~~~~~~i~~ 77 (156)
|-+++... ....+|+++|++++.++.|++|.+.+ |++| ++++.+|..+.... ...||.|+++-+.....+
T Consensus 224 G~fsl~La--~~~~~V~gvE~~~~ai~~A~~na~~n-~i~n---~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~ 297 (358)
T d1uwva2 224 GNFTLPLA--TQAASVVGVEGVPALVEKGQQNARLN-GLQN---VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAG 297 (358)
T ss_dssp TTTHHHHH--TTSSEEEEEESCHHHHHHHHHHHHHT-TCCS---EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHH
T ss_pred cccchhcc--ccccEEEeccCcHHHHHHHHHhHHhc-cccc---ceeeecchhhhhhhhhhhhccCceEEeCCCCccHHH
Confidence 55564322 23479999999999999999999996 8999 99999998765432 367999999998877664
Q ss_pred HHHh--hCCCCcEEEEEecc
Q psy14971 78 EILA--QLKPGGRLVFHKGL 95 (156)
Q Consensus 78 ~l~~--~L~pGGrLv~~~~~ 95 (156)
.+.. .++|. ++|.+.+.
T Consensus 298 ~~~~l~~~~~~-~ivYVSCn 316 (358)
T d1uwva2 298 VMQQIIKLEPI-RIVYVSCN 316 (358)
T ss_dssp HHHHHHHHCCS-EEEEEESC
T ss_pred HHHHHHHcCCC-EEEEEeCC
Confidence 3322 23554 45544443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=5.9e-05 Score=55.48 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=70.5
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCC--chHHHH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACI--EVPKEI 79 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~--~i~~~l 79 (156)
|+=++..+++.|..+|+.+|.+...+...++-.+. ++++| ++++++.+.+. ....+||.|++-|-.+ .+-+..
T Consensus 77 G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~-L~L~n---v~v~~~R~E~~-~~~~~fD~V~sRA~~~~~~ll~~~ 151 (207)
T d1jsxa_ 77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE-LKLEN---IEPVQSRVEEF-PSEPPFDGVISRAFASLNDMVSWC 151 (207)
T ss_dssp TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH-TTCSS---EEEEECCTTTS-CCCSCEEEEECSCSSSHHHHHHHH
T ss_pred CceeeehhhhcccceEEEEecchHHHHHHHHHHHH-cCCcc---eeeeccchhhh-ccccccceehhhhhcCHHHHHHHH
Confidence 55566667788999999999999999999999888 79999 99999998764 3346899887655432 233445
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
...|+++|++++.-+.
T Consensus 152 ~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 152 HHLPGEQGRFYALKGQ 167 (207)
T ss_dssp TTSEEEEEEEEEEESS
T ss_pred HHhcCCCcEEEEECCC
Confidence 6789999999999874
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=0.00011 Score=59.19 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=55.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhh------cC--CCCccceEE-EEccCCCCCC---CCCCcCEEEE
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLN------IK--QNRKSFKNV-SVKDGSKGHA---EEGPYDIIHL 68 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~------~g--~~n~~~v~~-~~gD~~~~~~---~~~~fD~I~i 68 (156)
.|.+++.++..-+.++|+|||+++.+++.|+++.+.. .+ ..+ +.+ ..++..+... .....|+|++
T Consensus 227 ~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~---~~~~~~~~f~~~~~~d~~~~~adVV~i 303 (406)
T d1u2za_ 227 VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN---VEFSLKKSFVDNNRVAELIPQCDVILV 303 (406)
T ss_dssp TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC---EEEEESSCSTTCHHHHHHGGGCSEEEE
T ss_pred CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc---ceeeeeechhhccccccccccceEEEE
Confidence 3667765444333479999999999999999988652 11 122 333 2333332111 1235789998
Q ss_pred ccCCC--chH---HHHHhhCCCCcEEEEE
Q psy14971 69 GAACI--EVP---KEILAQLKPGGRLVFH 92 (156)
Q Consensus 69 ~~~~~--~i~---~~l~~~L~pGGrLv~~ 92 (156)
+.-+. ++. ..+.+.|||||++|+.
T Consensus 304 nn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 304 NNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 75442 222 3567899999999884
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=3.6e-05 Score=58.00 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=52.2
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhhcCCC-Cc-------------------------cc-eEEEEccCCCCC------CCCC
Q psy14971 15 ALVLILNHYMKVKSKNQNNKKLNIKQN-RK-------------------------SF-KNVSVKDGSKGH------AEEG 61 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l~~~~g~~-n~-------------------------~~-v~~~~gD~~~~~------~~~~ 61 (156)
.+|+++|+++.|++.|+++++.. +.. +- .. -.+...|..... ...+
T Consensus 78 ~~v~~~D~S~~~i~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 156 (263)
T d2g72a1 78 EDITMTDFLEVNRQELGRWLQEE-PGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL 156 (263)
T ss_dssp SEEEEECSCHHHHHHHHHHHTTC-TTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCS
T ss_pred CeEEEEeCCHHHHHHHHHHHhcC-cccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcC
Confidence 58999999999999999887541 100 00 00 123445554321 1235
Q ss_pred CcCEEEEccCCCchH----------HHHHhhCCCCcEEEEEec
Q psy14971 62 PYDIIHLGAACIEVP----------KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 62 ~fD~I~i~~~~~~i~----------~~l~~~L~pGGrLv~~~~ 94 (156)
.||+|++....+.++ ..+.++|||||.|++...
T Consensus 157 ~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 157 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp SEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 799999988765543 246789999999998654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.50 E-value=0.00027 Score=54.39 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=57.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch------------------
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV------------------ 75 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i------------------ 75 (156)
...++|+|+++.+++.|+.|+... +. + ..+..+|.....+ ...||.|+.+.+....
T Consensus 146 ~~~~~g~di~~~~~~~a~~~~~~~-~~-~---~~~~~~d~~~~~~-~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~ 219 (328)
T d2f8la1 146 DVHASGVDVDDLLISLALVGADLQ-RQ-K---MTLLHQDGLANLL-VDPVDVVISDLPVGYYPDDENAKTFELCREEGHS 219 (328)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHH-TC-C---CEEEESCTTSCCC-CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCE
T ss_pred cceEEEecccHHHHHHHHHHHHHh-hh-h---hhhhccccccccc-cccccccccCCCCCCCccchhhhhcchhcccCcc
Confidence 358999999999999999998874 54 4 6788888765433 4689999999876311
Q ss_pred ------HHHHHhhCCCCcEEEEEec
Q psy14971 76 ------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ------~~~l~~~L~pGGrLv~~~~ 94 (156)
.....+.|+|||++++.+.
T Consensus 220 ~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 220 FAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCCceEEEec
Confidence 1245789999999888764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.48 E-value=5.4e-05 Score=56.58 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=51.2
Q ss_pred hcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCchH---H-HHHh
Q psy14971 10 IKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIEVP---K-EILA 81 (156)
Q Consensus 10 l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~i~---~-~l~~ 81 (156)
..++.++|+++|+++.....+ . ....+ ++++.||...... ...++|.||++++-..-. + .+..
T Consensus 104 ~~~~~~kI~giDId~~~~~~~-----~-~~~~~---I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~ 174 (232)
T d2bm8a1 104 IMGIDCQVIGIDRDLSRCQIP-----A-SDMEN---ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDH 174 (232)
T ss_dssp HTTCCCEEEEEESCCTTCCCC-----G-GGCTT---EEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHH
T ss_pred hcCCCceEEecCcChhhhhhh-----h-ccccc---eeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhc
Confidence 347789999999988643221 1 12356 9999999864321 134689999998854322 1 3457
Q ss_pred hCCCCcEEEEEe
Q psy14971 82 QLKPGGRLVFHK 93 (156)
Q Consensus 82 ~L~pGGrLv~~~ 93 (156)
.|++||.+|+--
T Consensus 175 lLk~GG~iIveD 186 (232)
T d2bm8a1 175 LLEEGDYFIIED 186 (232)
T ss_dssp TCCTTCEEEECS
T ss_pred ccCcCCEEEEEc
Confidence 999999999853
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=7.4e-05 Score=53.83 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=56.9
Q ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-----CCCCCcCEEEEccCCCch--------
Q psy14971 9 GIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-----AEEGPYDIIHLGAACIEV-------- 75 (156)
Q Consensus 9 ~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-----~~~~~fD~I~i~~~~~~i-------- 75 (156)
.++..+++|+|+|+++++++.|++.. ..+ +.+++++..+.. .....+|.|+.+-+++..
T Consensus 35 ~iL~~~~~viaiD~D~~ai~~a~~~~-----~~~---~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re 106 (182)
T d1wg8a2 35 GILERGGRVIGLDQDPEAVARAKGLH-----LPG---LTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDE 106 (182)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHTC-----CTT---EEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTH
T ss_pred HHhcccCcEEEEhhhhhHHHHHhhcc-----ccc---eeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHH
Confidence 34445799999999999999987532 245 899998765421 113579999999988643
Q ss_pred -------HHHHHhhCCCCcEEEEEec
Q psy14971 76 -------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -------~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.|++||++++..-
T Consensus 107 ~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 107 LNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1345788999999998764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.15 E-value=0.00037 Score=55.36 Aligned_cols=91 Identities=15% Similarity=0.020 Sum_probs=61.9
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCc------------cceEEEEccCCCCCC-CCCCcCEEE
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRK------------SFKNVSVKDGSKGHA-EEGPYDIIH 67 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~------------~~v~~~~gD~~~~~~-~~~~fD~I~ 67 (156)
|-.++- |.-.+ ..+|++.|++++.++.+++|++.+ +..+. ..+.+.+.|+..... ....||.|.
T Consensus 57 G~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN-~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvID 134 (375)
T d2dula1 57 GIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLN-FDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFID 134 (375)
T ss_dssp SHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHH-CCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEE
T ss_pred cHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhc-CccccccccccccccccceeEeehhhhhhhhHhhcCcCCccc
Confidence 556663 33344 469999999999999999999876 54320 015566666543222 235799999
Q ss_pred EccCCC--chHHHHHhhCCCCcEEEEEec
Q psy14971 68 LGAACI--EVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 68 i~~~~~--~i~~~l~~~L~pGGrLv~~~~ 94 (156)
++.=-+ ..-+...+.++.||.|.+...
T Consensus 135 iDPfGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 135 LDPFGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp ECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence 986322 233677788999999998754
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.12 E-value=0.00022 Score=53.80 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=50.9
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC---------CCccceEEEEccCCCCCCC-CCCcCEEEEcc
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ---------NRKSFKNVSVKDGSKGHAE-EGPYDIIHLGA 70 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~---------~n~~~v~~~~gD~~~~~~~-~~~fD~I~i~~ 70 (156)
+|--++++..+| ++|+++|.++.+....+++++++ .. .| ++++++|+.+.+.. ..+||+|+++.
T Consensus 99 lG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~-~~~~~~~~~~~~r---i~li~~Ds~~~L~~~~~~~DvIYlDP 172 (250)
T d2oyra1 99 LGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARG-YADAEIGGWLQER---LQLIHASSLTALTDITPRPQVVYLDP 172 (250)
T ss_dssp TCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHH-HHCTTTHHHHHHH---EEEEESCHHHHSTTCSSCCSEEEECC
T ss_pred ccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHH-HhCchhHHHHhhh---heeecCcHHHHHhccCCCCCEEEECC
Confidence 355666555555 79999999999999999888763 21 25 99999998664433 45799999999
Q ss_pred CCC
Q psy14971 71 ACI 73 (156)
Q Consensus 71 ~~~ 73 (156)
+.+
T Consensus 173 MFp 175 (250)
T d2oyra1 173 MFP 175 (250)
T ss_dssp CCC
T ss_pred CCc
Confidence 875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.09 E-value=0.00067 Score=50.69 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=70.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---CCCCCcCEEEEccCCC--chH
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---AEEGPYDIIHLGAACI--EVP 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---~~~~~fD~I~i~~~~~--~i~ 76 (156)
|+=++..+++-|..+|+-+|.+...++..++-.+. +|++| +.++++.+.+.. ....+||.|++-|-.+ .+-
T Consensus 82 GfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~-L~L~n---~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~l~~ll 157 (239)
T d1xdza_ 82 GFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA-LQLEN---TTFCHDRAETFGQRKDVRESYDIVTARAVARLSVLS 157 (239)
T ss_dssp CTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH-HTCSS---EEEEESCHHHHTTCTTTTTCEEEEEEECCSCHHHHH
T ss_pred chHHHHHHHhCCCccceeecchHHHHHHHHHHHHH-hCCCC---cEEEeehhhhccccccccccceEEEEhhhhCHHHHH
Confidence 56667777778889999999999999999998888 69999 999998764321 1235799998865442 333
Q ss_pred HHHHhhCCCCcEEEEEecc
Q psy14971 77 KEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~~~~ 95 (156)
+.....|++||++++.-+.
T Consensus 158 ~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 158 ELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp HHHGGGEEEEEEEEEEECC
T ss_pred HHHhhhcccCCEEEEECCC
Confidence 5567899999999998875
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.92 E-value=0.0013 Score=47.06 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=51.0
Q ss_pred CEEEEEeCCHHHHHHHHHHH--------------hhhc---CCCCc----------cceEEEEccCCCCC-CCCCCcCEE
Q psy14971 15 ALVLILNHYMKVKSKNQNNK--------------KLNI---KQNRK----------SFKNVSVKDGSKGH-AEEGPYDII 66 (156)
Q Consensus 15 g~V~avD~~~~~~~~A~~~l--------------~~~~---g~~n~----------~~v~~~~gD~~~~~-~~~~~fD~I 66 (156)
-+|+|.|+++..++.|++.. .+.+ +.... +.+.+...+..... +..++||+|
T Consensus 57 ~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI 136 (193)
T d1af7a2 57 WKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAI 136 (193)
T ss_dssp EEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEE
T ss_pred eEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEE
Confidence 37999999999999998432 1100 00000 01556666655432 235789999
Q ss_pred EEccCCCch--------HHHHHhhCCCCcEEEEEe
Q psy14971 67 HLGAACIEV--------PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 67 ~i~~~~~~i--------~~~l~~~L~pGGrLv~~~ 93 (156)
++-....-+ -+.+.+.|+|||.|++-.
T Consensus 137 ~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 137 FCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred EeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 998766433 346789999999988744
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.81 E-value=0.0017 Score=44.89 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=53.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC---------CCCCCcCEEEEccC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH---------AEEGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~---------~~~~~fD~I~i~~~ 71 (156)
|.+++ +++..| ++|+++|.+++.++.|++. |.+ ..+..-+..+.. .....+|+||-..+
T Consensus 39 G~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~-----ga~----~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g 107 (170)
T d1e3ja2 39 GLVSVLAAKAYG--AFVVCTARSPRRLEVAKNC-----GAD----VTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSG 107 (170)
T ss_dssp HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT-----TCS----EEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSC
T ss_pred chhhHhhHhhhc--ccccccchHHHHHHHHHHc-----CCc----EEEeccccccccchhhhhhhcccccCCceeeecCC
Confidence 44554 455555 6999999999999888753 332 222221111110 01245899988877
Q ss_pred CCchHHHHHhhCCCCcEEEEEe
Q psy14971 72 CIEVPKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 72 ~~~i~~~l~~~L~pGGrLv~~~ 93 (156)
.+...+...+.|+++|++++.-
T Consensus 108 ~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 108 NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp CHHHHHHHHHHSCTTCEEEECS
T ss_pred ChHHHHHHHHHHhcCCceEEEe
Confidence 7666677789999999999854
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.31 E-value=0.0071 Score=47.99 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCCCCCcCEEEEccCCCc-------------------
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------------------- 74 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------------------- 74 (156)
.++++|+++.+...|+.|+-.+ |. .+ ..+..+|..... ....||+|+.+.+...
T Consensus 201 ~l~g~E~~~~~~~la~~n~~l~-g~~~~~---~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~ 275 (425)
T d2okca1 201 ALHGVDNTPLVVTLASMNLYLH-GIGTDR---SPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKN 275 (425)
T ss_dssp TEEEEESCHHHHHHHHHHHHHT-TCCSSC---CSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSC
T ss_pred hhhhhhccHHHHHHHHhhhhhc-CCcccc---ceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhccccccc
Confidence 5999999999999999998764 54 23 668888877643 3467999999987531
Q ss_pred ----hHHHHHhhCCCCcEEEEEec
Q psy14971 75 ----VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 ----i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-....+.|++||++++++.
T Consensus 276 ~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 276 NQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCeEEEEec
Confidence 11245789999999988754
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.24 E-value=0.0067 Score=44.90 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=55.2
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK---- 77 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~---- 77 (156)
|.+++......|+.+++.+|. |+.+ +..-..++ ++++.||..+..| ..|++++...+++.++
T Consensus 93 G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~~~~~~r---i~~~~gd~~~~~p---~~D~~~l~~vLh~~~de~~~ 158 (244)
T d1fp1d2 93 GRNLELIISKYPLIKGINFDL-PQVI-------ENAPPLSG---IEHVGGDMFASVP---QGDAMILKAVCHNWSDEKCI 158 (244)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHH-------TTCCCCTT---EEEEECCTTTCCC---CEEEEEEESSGGGSCHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEecc-hhhh-------hccCCCCC---eEEecCCcccccc---cceEEEEehhhhhCCHHHHH
Confidence 555554444567899999997 3433 22112245 9999999876544 4599999988877653
Q ss_pred ----HHHhhCCCCcEEEEEe
Q psy14971 78 ----EILAQLKPGGRLVFHK 93 (156)
Q Consensus 78 ----~l~~~L~pGGrLv~~~ 93 (156)
.+.+.|+|||+|++..
T Consensus 159 ~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 159 EFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 4578899999999965
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.00077 Score=46.96 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=49.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-CCCCCcCEEEEccCCCc--hHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-AEEGPYDIIHLGAACIE--VPK 77 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-~~~~~fD~I~i~~~~~~--i~~ 77 (156)
|.+++ +|+..| ++|+++|.+++.++.|++ +|.+. .+...+-.+.. .....||.++...+... ...
T Consensus 40 G~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~-----lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~ 108 (168)
T d1piwa2 40 GSMGTLISKAMG--AETYVISRSSRKREDAMK-----MGADH----YIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 108 (168)
T ss_dssp HHHHHHHHHHHT--CEEEEEESSSTTHHHHHH-----HTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTT
T ss_pred chhHHHHhhhcc--ccccccccchhHHHHhhc-----cCCcE----EeeccchHHHHHhhhcccceEEEEecCCccchHH
Confidence 44444 455665 699999999999888764 35432 12222211111 12357999988654432 234
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
...+.|+++|++++.
T Consensus 109 ~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 109 IMPKAMKVGGRIVSI 123 (168)
T ss_dssp TGGGGEEEEEEEEEC
T ss_pred HHHHHhhccceEEEe
Confidence 568899999999985
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0026 Score=44.59 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=53.1
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--C------CCCCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--K------GHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~------~~~~~~~fD~I~i~~~~ 72 (156)
|.+++ +|+..|. .+|+++|.+++.++.|++ +|.+. .+-..+.. + .......+|.||-..+.
T Consensus 41 G~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~-----lGa~~----vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 41 GLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE-----IGADL----TLNRRETSVEERRKAIMDITHGRGADFILEATGD 110 (182)
T ss_dssp HHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH-----TTCSE----EEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSC
T ss_pred chhheeccccccc-cccccccccccccccccc-----ccceE----EEeccccchHHHHHHHHHhhCCCCceEEeecCCc
Confidence 44454 4666664 489999999999988864 35322 11111110 0 01122459999988877
Q ss_pred CchHHHHHhhCCCCcEEEEE
Q psy14971 73 IEVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 73 ~~i~~~l~~~L~pGGrLv~~ 92 (156)
+...+...+.|++||++++.
T Consensus 111 ~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 111 SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TTHHHHHHHHEEEEEEEEEC
T ss_pred hhHHHHHHHHhcCCCEEEEE
Confidence 77777888999999999875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.005 Score=42.59 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=54.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC--------CCCCCcCEEEEccCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH--------AEEGPYDIIHLGAAC 72 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~--------~~~~~fD~I~i~~~~ 72 (156)
|.+++ +++..|. .+|+++|.+++.++.|++ +|.+. + +.-+-.... .....+|.||-..+.
T Consensus 39 G~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~-----~Ga~~---~--~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 39 GMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE-----IGADL---V--LQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp HHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH-----TTCSE---E--EECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred HHHHHHHHHHcCC-ceEEeccCCHHHHHHHHH-----hCCcc---c--ccccccccccccccccccCCCCceEEEeccCC
Confidence 44444 4556663 589999999999998874 35432 1 111111100 012468999998888
Q ss_pred CchHHHHHhhCCCCcEEEEEec
Q psy14971 73 IEVPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 73 ~~i~~~l~~~L~pGGrLv~~~~ 94 (156)
+...+...+.+++||++++.-.
T Consensus 108 ~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 108 EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHHHHHHSCTTCEEEECSC
T ss_pred chhHHHHHHHhcCCCEEEEEec
Confidence 7777888999999999998543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.72 E-value=0.025 Score=41.64 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=55.1
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHH--
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPK-- 77 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~-- 77 (156)
.|.+++......|+.+++.+|. |+.+ +. .+. ++ ++++.||..+..+ .+|++++...+++.++
T Consensus 91 ~G~~~~~l~~~~P~l~~~v~Dl-p~vi-------~~-~~~~~r---v~~~~gD~f~~~p---~aD~~~l~~vLHdw~d~~ 155 (244)
T d1fp2a2 91 TGTTAKIICETFPKLKCIVFDR-PQVV-------EN-LSGSNN---LTYVGGDMFTSIP---NADAVLLKYILHNWTDKD 155 (244)
T ss_dssp TSHHHHHHHHHCTTCEEEEEEC-HHHH-------TT-CCCBTT---EEEEECCTTTCCC---CCSEEEEESCGGGSCHHH
T ss_pred ccHHHHHHHHhCCCCeEEEecC-HHHH-------Hh-CcccCc---eEEEecCcccCCC---CCcEEEEEeecccCChHH
Confidence 3666665555567889999998 4433 23 233 34 9999999887543 5799999988876553
Q ss_pred ------HHHhhCCCC---cEEEEEe
Q psy14971 78 ------EILAQLKPG---GRLVFHK 93 (156)
Q Consensus 78 ------~l~~~L~pG---GrLv~~~ 93 (156)
.+.+.|+|| |++++..
T Consensus 156 ~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 156 CLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HHHHHHHHHHHcCcccCCcEEEEEE
Confidence 457789998 7777754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=95.63 E-value=0.0079 Score=44.33 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=42.5
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAA 71 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~ 71 (156)
|.||. ++.. ..+|+++|+|+.+++..++++.. .+| ++++.+|+.+..........|+.+-+
T Consensus 33 G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~---~~n---~~i~~~D~l~~~~~~~~~~~vv~NLP 94 (235)
T d1qama_ 33 GHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD---HDN---FQVLNKDILQFKFPKNQSYKIFGNIP 94 (235)
T ss_dssp SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT---CCS---EEEECCCGGGCCCCSSCCCEEEEECC
T ss_pred hHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc---ccc---hhhhhhhhhhccccccccceeeeeeh
Confidence 66664 3443 37999999999999999998764 367 99999999864222223345554433
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.33 E-value=0.0044 Score=42.73 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=52.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC------CCCCCcCEEEEccCCCc
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH------AEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~------~~~~~fD~I~i~~~~~~ 74 (156)
|.+++ +++..+. ..|+++|.+++.++.+++. |.+. ++..+..+.. .....||.++-..+...
T Consensus 41 G~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~-----Ga~~-----~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~ 109 (170)
T d1jvba2 41 GTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA-----GADY-----VINASMQDPLAEIRRITESKGVDAVIDLNNSEK 109 (170)
T ss_dssp HHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH-----TCSE-----EEETTTSCHHHHHHHHTTTSCEEEEEESCCCHH
T ss_pred eeeeeeccccccc-ccccccccchhhHHHHHHc-----CCce-----eeccCCcCHHHHHHHHhhcccchhhhcccccch
Confidence 44444 3455553 6999999999988888742 5432 2222211110 11346999998877766
Q ss_pred hHHHHHhhCCCCcEEEEE
Q psy14971 75 VPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 75 i~~~l~~~L~pGGrLv~~ 92 (156)
..+...+.|+|||++++.
T Consensus 110 ~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 110 TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HHTTGGGGEEEEEEEEEC
T ss_pred HHHhhhhhcccCCEEEEe
Confidence 666778999999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.81 E-value=0.026 Score=39.16 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=53.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCC--CC---CCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGS--KG---HAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~--~~---~~~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..|. .+|+++|.+++.++.|++ +|.+. .+-..+.. +. ......+|+||-..+.+..
T Consensus 40 Gl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~-----lGa~~----~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~ 109 (174)
T d1jqba2 40 GLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF-----YGATD----ILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSET 109 (174)
T ss_dssp HHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH-----HTCSE----EECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTH
T ss_pred hhhhhhhhhcccc-cccccccchhhhHHHHHh-----hCccc----cccccchhHHHHHHHHhhccCcceEEEccCCHHH
Confidence 34444 3555553 579999999999988874 35322 11111110 00 1122459999998888777
Q ss_pred HHHHHhhCCCCcEEEEEe
Q psy14971 76 PKEILAQLKPGGRLVFHK 93 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~ 93 (156)
.+..++.|+|+|++++.-
T Consensus 110 ~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 110 LSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp HHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEe
Confidence 777889999999999953
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.011 Score=40.67 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=52.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC-CCCCCCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK-GHAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~-~~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
|.+++ +|+..| .+++++|.+++..+.++ + +|.+. ++.-+-.. .......+|.++-..+........
T Consensus 43 G~~a~qlak~~G--a~~i~~~~~~~~~~~a~----~-lGad~-----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 110 (168)
T d1uufa2 43 GHMGIKLAHAMG--AHVVAFTTSEAKREAAK----A-LGADE-----VVNSRNADEMAAHLKSFDFILNTVAAPHNLDDF 110 (168)
T ss_dssp HHHHHHHHHHTT--CEEEEEESSGGGHHHHH----H-HTCSE-----EEETTCHHHHHTTTTCEEEEEECCSSCCCHHHH
T ss_pred HHHHHHHhhccc--ccchhhccchhHHHHHh----c-cCCcE-----EEECchhhHHHHhcCCCceeeeeeecchhHHHH
Confidence 44554 455554 68889999999887766 3 35432 22211111 112235699999888777666677
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
.+.|+++|++++.-
T Consensus 111 ~~~l~~~G~iv~~G 124 (168)
T d1uufa2 111 TTLLKRDGTMTLVG 124 (168)
T ss_dssp HTTEEEEEEEEECC
T ss_pred HHHHhcCCEEEEec
Confidence 89999999999963
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.67 E-value=0.018 Score=39.23 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=48.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC----CCCCcCEEEEccCCCchH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA----EEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~----~~~~fD~I~i~~~~~~i~ 76 (156)
|.+++ +++..| .+|+++|.+++.++.+++ +|.+. ++.-+..+... ....+|.++.+.......
T Consensus 40 G~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~-----~Ga~~-----~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~ 107 (166)
T d1llua2 40 GHVAVQYARAMG--LHVAAIDIDDAKLELARK-----LGASL-----TVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAF 107 (166)
T ss_dssp HHHHHHHHHHTT--CEEEEEESCHHHHHHHHH-----TTCSE-----EEETTTSCHHHHHHHHHSSEEEEEECCSCHHHH
T ss_pred HHHHHHHHHHcC--CccceecchhhHHHhhhc-----cCccc-----cccccchhHHHHHHHhhcCCcccccccccchHH
Confidence 44444 456665 799999999999988763 35432 22222111110 112355555555555555
Q ss_pred HHHHhhCCCCcEEEEE
Q psy14971 77 KEILAQLKPGGRLVFH 92 (156)
Q Consensus 77 ~~l~~~L~pGGrLv~~ 92 (156)
+...+.|++||++++.
T Consensus 108 ~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 108 GQAIGMARRGGTIALV 123 (166)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHHHhcCCcEEEEE
Confidence 6678999999999884
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.64 E-value=0.02 Score=39.57 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=53.9
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-----CCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-----EEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-----~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +|+..|. ..|+++|.+++.++.|++ +|.+. ++.-+..+... ..+.||.||-..+....
T Consensus 41 G~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~-----~Ga~~-----~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~ 109 (174)
T d1f8fa2 41 GLSALLAAKVCGA-SIIIAVDIVESRLELAKQ-----LGATH-----VINSKTQDPVAAIKEITDGGVNFALESTGSPEI 109 (174)
T ss_dssp HHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH-----HTCSE-----EEETTTSCHHHHHHHHTTSCEEEEEECSCCHHH
T ss_pred Hhhhhhccccccc-ceeeeeccHHHHHHHHHH-----cCCeE-----EEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHH
Confidence 33444 4666664 688999999999888874 25432 23222111100 12469999998888777
Q ss_pred HHHHHhhCCCCcEEEEE
Q psy14971 76 PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~ 92 (156)
.+...+.|+|+|++++.
T Consensus 110 ~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 110 LKQGVDALGILGKIAVV 126 (174)
T ss_dssp HHHHHHTEEEEEEEEEC
T ss_pred HHHHHhcccCceEEEEE
Confidence 77888999999999985
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.09 Score=39.45 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=45.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC-CCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ-NRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~-~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
+|.||- |++. + .+|+++|+|+.+++..++++... .. .| ++++.+|+.+... ..++.|+.+-+.
T Consensus 32 ~G~LT~~Ll~~-~--~~v~aiE~D~~l~~~L~~~~~~~-~~~~~---~~~i~~D~l~~~~--~~~~~vV~NLPY 96 (278)
T d1zq9a1 32 TGNMTVKLLEK-A--KKVVACELDPRLVAELHKRVQGT-PVASK---LQVLVGDVLKTDL--PFFDTCVANLPY 96 (278)
T ss_dssp TSTTHHHHHHH-S--SEEEEEESCHHHHHHHHHHHTTS-TTGGG---EEEEESCTTTSCC--CCCSEEEEECCG
T ss_pred chHHHHHHHhc-C--CcEEEEEEccchhHHHHHHHhhh-ccccc---hhhhHHHHhhhhh--hhhhhhhcchHH
Confidence 477774 3443 3 69999999999999999998762 32 46 9999999976422 346677665443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=93.96 E-value=0.0028 Score=47.19 Aligned_cols=63 Identities=14% Similarity=0.025 Sum_probs=45.0
Q ss_pred CchHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCC
Q psy14971 1 MGDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAAC 72 (156)
Q Consensus 1 ~G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~ 72 (156)
.|.||- +++. ..+|++||+|+.+++.+++++.. ..| ++++++|+.+.......++.|+.+-+.
T Consensus 40 ~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~---~~n---~~ii~~D~l~~~~~~~~~~~vv~NLPY 103 (245)
T d1yuba_ 40 KGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL---NTR---VTLIHQDILQFQFPNKQRYKIVGNIPY 103 (245)
T ss_dssp CSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT---CSE---EEECCSCCTTTTCCCSSEEEEEEECCS
T ss_pred ccHHHHHHHhh---cCceeEeeecccchhhhhhhhhh---ccc---hhhhhhhhhccccccceeeeEeeeeeh
Confidence 366664 4444 36999999999999998877654 257 999999998744334556667765554
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.05 Score=44.11 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=52.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCc--cceEEEEccCCCC-CCCCCCcCEEEEccCCCc------------------
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRK--SFKNVSVKDGSKG-HAEEGPYDIIHLGAACIE------------------ 74 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~--~~v~~~~gD~~~~-~~~~~~fD~I~i~~~~~~------------------ 74 (156)
.++++|+++.+...|+.|+--+ +.... ..-.+..++.... ......||+|+.+.+...
T Consensus 208 ~~~G~E~~~~~~~la~~nl~l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~ 286 (524)
T d2ar0a1 208 AFIGLELVPGTRRLALMNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ 286 (524)
T ss_dssp SEEEEESCHHHHHHHHHHHHTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH
T ss_pred hhhhhccCHHHHHHHHHHHHhh-cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc
Confidence 6899999999999999998753 43210 0023455554321 112457999999986531
Q ss_pred --hHHHHHhhCCCCcEEEEEec
Q psy14971 75 --VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 75 --i~~~l~~~L~pGGrLv~~~~ 94 (156)
.-...++.|++||++++++.
T Consensus 287 ~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 287 LCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhccccCcEEEEEe
Confidence 11346789999999998754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.86 E-value=0.037 Score=38.73 Aligned_cols=83 Identities=10% Similarity=0.013 Sum_probs=50.4
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--CCCCCCcCEEEEccCCCchHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--HAEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--~~~~~~fD~I~i~~~~~~i~~~ 78 (156)
|..++ +|+..| ++|++.-.+++..+.+++. |.+. +.-...+-.+. ......||.|+=..+-. ..+.
T Consensus 45 G~~aiQlak~~G--a~Viat~~s~~k~~~~~~l-----Ga~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~-~~~~ 113 (176)
T d1xa0a2 45 GSLAVSMLAKRG--YTVEASTGKAAEHDYLRVL-----GAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR-TLAT 113 (176)
T ss_dssp HHHHHHHHHHTT--CCEEEEESCTTCHHHHHHT-----TCSE---EEECC---------CCSCCEEEEEECSTTT-THHH
T ss_pred HHHHHHHHHHcC--CceEEecCchHHHHHHHhc-----ccce---eeecchhHHHHHHHhhccCcCEEEEcCCch-hHHH
Confidence 34444 466665 8999999999988888742 4332 11111111111 11245799877766544 4556
Q ss_pred HHhhCCCCcEEEEEecc
Q psy14971 79 ILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~~ 95 (156)
..+.|++|||++..-..
T Consensus 114 ~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 114 VLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp HHHTEEEEEEEEECSCC
T ss_pred HHHHhCCCceEEEeecc
Confidence 78899999999986543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.75 E-value=0.0079 Score=41.59 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=52.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-----CCCCCCcCEEEEccCCCch
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-----HAEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-----~~~~~~fD~I~i~~~~~~i 75 (156)
|.+++ +++..|. ..|+++|.+++.++.+++. |.+. ++..+.... ......+|.+|-..+....
T Consensus 45 G~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~-----ga~~-----~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~ 113 (172)
T d1h2ba2 45 GHIAVQLLKVMTP-ATVIALDVKEEKLKLAERL-----GADH-----VVDARRDPVKQVMELTRGRGVNVAMDFVGSQAT 113 (172)
T ss_dssp HHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHT-----TCSE-----EEETTSCHHHHHHHHTTTCCEEEEEESSCCHHH
T ss_pred HHHHHHHHHhhcC-cccccccchhHHHHHHhhc-----ccce-----eecCcccHHHHHHHhhCCCCceEEEEecCcchH
Confidence 34443 4566664 6899999999988887743 4322 232221100 0112459999998887766
Q ss_pred HHHHHhhCCCCcEEEEE
Q psy14971 76 PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~ 92 (156)
.+...+.|++||++++.
T Consensus 114 ~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 114 VDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp HHHGGGGEEEEEEEEEC
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 67778999999999974
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.66 E-value=0.14 Score=35.36 Aligned_cols=81 Identities=12% Similarity=0.023 Sum_probs=53.6
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-------CCCCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-------AEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-------~~~~~fD~I~i~~~~~ 73 (156)
|.+++ ++++.|. .+|++.|.+++.++.|++ +|.+. ++.-.-.+.. .....+|.+|-..+.+
T Consensus 41 Gl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~-----~Ga~~-----~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~ 109 (174)
T d1e3ia2 41 GLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA-----LGATD-----CLNPRELDKPVQDVITELTAGGVDYSLDCAGTA 109 (174)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH-----TTCSE-----EECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred HHHHHHHHHHhCC-ceeeeeccchHHHHHHHH-----hCCCc-----ccCCccchhhhhhhHhhhhcCCCcEEEEecccc
Confidence 44554 3566664 689999999998888774 35432 2221111111 0135699999988887
Q ss_pred chHHHHHhhCCCC-cEEEEEe
Q psy14971 74 EVPKEILAQLKPG-GRLVFHK 93 (156)
Q Consensus 74 ~i~~~l~~~L~pG-GrLv~~~ 93 (156)
...+...+.|++| |++++.-
T Consensus 110 ~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 110 QTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHHHHHHHTBCTTTCEEEECC
T ss_pred hHHHHHHHHhhcCCeEEEecC
Confidence 7777788899996 9998853
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=93.61 E-value=0.19 Score=36.38 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=53.4
Q ss_pred chHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchH-----
Q psy14971 2 GDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVP----- 76 (156)
Q Consensus 2 G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~----- 76 (156)
|.+++......|+.+++.+|.-+. + +..-..++ ++++.+|..+..|. .|.+++..-.+..+
T Consensus 93 G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r---~~~~~~d~~~~~P~---ad~~~l~~vlh~~~d~~~~ 158 (243)
T d1kyza2 93 GAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPG---VEHVGGDMFVSIPK---ADAVFMKWICHDWSDEHCL 158 (243)
T ss_dssp SHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTT---EEEEECCTTTCCCC---CSCEECSSSSTTSCHHHHH
T ss_pred cHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCc---eEEecccccccCCC---cceEEEEEEeecCCHHHHH
Confidence 666654445567899999998653 2 22101245 99999998776553 47777766655433
Q ss_pred ---HHHHhhCCCCcEEEEEec
Q psy14971 77 ---KEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 77 ---~~l~~~L~pGGrLv~~~~ 94 (156)
..+.+.|+|||++++...
T Consensus 159 ~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 159 KFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp HHHHHHHHHCCSSSCEEEEEC
T ss_pred HHHHHHHHhcCCCceEEEEEE
Confidence 467889999999998643
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.076 Score=37.19 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=53.2
Q ss_pred HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC--------CCCCcCEEEEccCCCc-
Q psy14971 4 LNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA--------EEGPYDIIHLGAACIE- 74 (156)
Q Consensus 4 la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~--------~~~~fD~I~i~~~~~~- 74 (156)
.-.+++.++..+.|+++|+.+- + .+++ +.++.+|...... ...++|.|+++++...
T Consensus 37 ~q~~~~~~~~~~~v~~vDl~~~---------~---~i~~---~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s 101 (180)
T d1ej0a_ 37 SQYVVTQIGGKGRIIACDLLPM---------D---PIVG---VDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp HHHHHHHHCTTCEEEEEESSCC---------C---CCTT---EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred eEEEEeeccccceEEEeecccc---------c---ccCC---ceEeecccccchhhhhhhhhccCcceeEEEecccchhc
Confidence 3356777888899999997652 1 3456 8999999865221 2367999999998642
Q ss_pred -hH---------------HHHHhhCCCCcEEEEEe
Q psy14971 75 -VP---------------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 75 -i~---------------~~l~~~L~pGGrLv~~~ 93 (156)
.. ....+.|++||.+|+=+
T Consensus 102 g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 11 12468899999999954
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.74 E-value=0.1 Score=36.05 Aligned_cols=83 Identities=14% Similarity=0.023 Sum_probs=49.7
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC------CCCCCcCEEEEccCCCc
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH------AEEGPYDIIHLGAACIE 74 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~------~~~~~fD~I~i~~~~~~ 74 (156)
|-+++. ++..|. .+|+++|++++.++.|++. |.+. .+-.-|..... .....+|.++...+...
T Consensus 42 Gl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~-----GA~~----~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~ 111 (176)
T d1d1ta2 42 GLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAV-----GATE----CISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLE 111 (176)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHH-----TCSE----EECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHH
T ss_pred hHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhc-----CCcE----EECccccchHHHHHHHHhccccceEEEEeCCchH
Confidence 344443 455553 7999999999999999865 4321 11111211110 11346999998888776
Q ss_pred hHHHHHhhC-CCCcEEEEEec
Q psy14971 75 VPKEILAQL-KPGGRLVFHKG 94 (156)
Q Consensus 75 i~~~l~~~L-~pGGrLv~~~~ 94 (156)
........+ +.+|++++.-.
T Consensus 112 ~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 112 TMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp HHHHHHTTSCTTTCEEEECSC
T ss_pred HHHHHHHHhhcCCeEEEEEEc
Confidence 555444444 55699998643
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.061 Score=37.50 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=49.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC-CCCCCCcCEEEEccCCCchHHHH
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG-HAEEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~-~~~~~~fD~I~i~~~~~~i~~~l 79 (156)
|..++ +|+..| ++|+++-.+++..+.+++ +|.+. + +-..|.... ......+|.++ +..-.......
T Consensus 45 G~~aiQlAk~~G--a~Via~~~~~~k~~~~~~-----lGad~---v-i~~~~~~~~~~l~~~~~~~vv-D~Vgg~~~~~~ 112 (177)
T d1o89a2 45 GSTAVALLHKLG--YQVVAVSGRESTHEYLKS-----LGASR---V-LPRDEFAESRPLEKQVWAGAI-DTVGDKVLAKV 112 (177)
T ss_dssp HHHHHHHHHHTT--CCEEEEESCGGGHHHHHH-----HTEEE---E-EEGGGSSSCCSSCCCCEEEEE-ESSCHHHHHHH
T ss_pred hHHHHHHHHHcC--CCeEEEecchhHHHHHHh-----hcccc---c-cccccHHHHHHHHhhcCCeeE-EEcchHHHHHH
Confidence 44555 577776 799999999998877763 24432 2 111221111 11234578764 55555566778
Q ss_pred HhhCCCCcEEEEEe
Q psy14971 80 LAQLKPGGRLVFHK 93 (156)
Q Consensus 80 ~~~L~pGGrLv~~~ 93 (156)
++.|+++|+++..-
T Consensus 113 l~~l~~~Griv~~G 126 (177)
T d1o89a2 113 LAQMNYGGCVAACG 126 (177)
T ss_dssp HHTEEEEEEEEECC
T ss_pred HHHhccccceEeec
Confidence 89999999999963
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.094 Score=35.79 Aligned_cols=75 Identities=17% Similarity=-0.012 Sum_probs=48.0
Q ss_pred hHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC--------CCCCCCcCEEEEccCCC
Q psy14971 3 DLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG--------HAEEGPYDIIHLGAACI 73 (156)
Q Consensus 3 ~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~--------~~~~~~fD~I~i~~~~~ 73 (156)
.+++ +|+..| .+|++++.+++..+.++ + +|.+. + + |..+. ......+|.|+-..+-
T Consensus 43 ~~aiq~a~~~G--~~vi~~~~~~~~~~~~~----~-~Ga~~---v--i--~~~~~~~~~~i~~~t~~~g~d~v~d~~g~- 107 (174)
T d1yb5a2 43 LAACQIARAYG--LKILGTAGTEEGQKIVL----Q-NGAHE---V--F--NHREVNYIDKIKKYVGEKGIDIIIEMLAN- 107 (174)
T ss_dssp HHHHHHHHHTT--CEEEEEESSHHHHHHHH----H-TTCSE---E--E--ETTSTTHHHHHHHHHCTTCEEEEEESCHH-
T ss_pred ccccccccccC--ccccccccccccccccc----c-cCccc---c--c--ccccccHHHHhhhhhccCCceEEeecccH-
Confidence 3444 355665 79999999988777665 3 36543 2 2 21111 1123569998887663
Q ss_pred chHHHHHhhCCCCcEEEEE
Q psy14971 74 EVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 74 ~i~~~l~~~L~pGGrLv~~ 92 (156)
..-+...+.|+|+|+++..
T Consensus 108 ~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 108 VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHhccCCCCEEEEE
Confidence 3445678899999999985
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.32 E-value=0.075 Score=36.66 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=51.3
Q ss_pred hHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC-CCCC--CCCCCcCEEEEccCCCchHHH
Q psy14971 3 DLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG-SKGH--AEEGPYDIIHLGAACIEVPKE 78 (156)
Q Consensus 3 ~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~-~~~~--~~~~~fD~I~i~~~~~~i~~~ 78 (156)
..++ +|+.+| ++|+++-.+++..+.+++ +|.+. +. ...|. .+.. ...+.+|.|+-+.+-..+ +.
T Consensus 38 ~~avQlAk~~G--a~Viat~~s~~k~~~~~~-----lGad~---vi-~~~~~~~~~~~~~~~~gvd~vid~vgg~~~-~~ 105 (167)
T d1tt7a2 38 GIAVSMLNKRG--YDVVASTGNREAADYLKQ-----LGASE---VI-SREDVYDGTLKALSKQQWQGAVDPVGGKQL-AS 105 (167)
T ss_dssp HHHHHHHHHHT--CCEEEEESSSSTHHHHHH-----HTCSE---EE-EHHHHCSSCCCSSCCCCEEEEEESCCTHHH-HH
T ss_pred HHHHHHHHHcC--CceEEEecCHHHHHHHHh-----hcccc---eE-eccchhchhhhcccCCCceEEEecCcHHHH-HH
Confidence 3444 577777 799999999888777653 35443 32 22221 1111 123569998877665444 56
Q ss_pred HHhhCCCCcEEEEEec
Q psy14971 79 ILAQLKPGGRLVFHKG 94 (156)
Q Consensus 79 l~~~L~pGGrLv~~~~ 94 (156)
.++.|+++|++++.-.
T Consensus 106 ~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 106 LLSKIQYGGSVAVSGL 121 (167)
T ss_dssp HHTTEEEEEEEEECCC
T ss_pred HHHHhccCceEEEeec
Confidence 7899999999998543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.29 E-value=0.14 Score=35.64 Aligned_cols=75 Identities=19% Similarity=0.077 Sum_probs=49.5
Q ss_pred HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCch----------
Q psy14971 6 VIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEV---------- 75 (156)
Q Consensus 6 ~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i---------- 75 (156)
.+.+.......++++|+++..++. ..+ ..++++|..... ....||.|+.+.+....
T Consensus 36 ~~~~~~~~~~~i~g~ei~~~~~~~----------~~~---~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~ 101 (223)
T d2ih2a1 36 AFREAHGTAYRFVGVEIDPKALDL----------PPW---AEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHV 101 (223)
T ss_dssp HHHHHHCSCSEEEEEESCTTTCCC----------CTT---EEEEESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCC
T ss_pred HHHHhccccceEEeeecCHHHHhh----------ccc---ceeeeeehhccc-cccccceecccCccccccccccccchh
Confidence 344555666889999999864321 123 567888876533 34679999998764210
Q ss_pred -------------------------HHHHHhhCCCCcEEEEEec
Q psy14971 76 -------------------------PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 -------------------------~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.|++||++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 102 FKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 0234678999999998864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.81 E-value=0.037 Score=38.12 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=45.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCchHHHHHhhCCCC
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIEVPKEILAQLKPG 86 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~i~~~l~~~L~pG 86 (156)
+|+..| .+|++++.+++..+.+++ +|.+. + +-..|..+.......+|+||-..+ ..+ +...+.|+++
T Consensus 47 lak~~G--~~vi~~~~~~~~~~~~~~-----lGa~~---~-i~~~~~~~~~~~~~g~D~v~d~~G-~~~-~~~~~~l~~~ 113 (171)
T d1iz0a2 47 VARAMG--LRVLAAASRPEKLALPLA-----LGAEE---A-ATYAEVPERAKAWGGLDLVLEVRG-KEV-EESLGLLAHG 113 (171)
T ss_dssp HHHHTT--CEEEEEESSGGGSHHHHH-----TTCSE---E-EEGGGHHHHHHHTTSEEEEEECSC-TTH-HHHHTTEEEE
T ss_pred hhcccc--cccccccccccccccccc-----cccce---e-eehhhhhhhhhccccccccccccc-hhH-HHHHHHHhcC
Confidence 455655 699999999987776653 36543 2 111221111112356999886444 334 4567899999
Q ss_pred cEEEEE
Q psy14971 87 GRLVFH 92 (156)
Q Consensus 87 GrLv~~ 92 (156)
|+++..
T Consensus 114 G~~v~~ 119 (171)
T d1iz0a2 114 GRLVYI 119 (171)
T ss_dssp EEEEEC
T ss_pred CcEEEE
Confidence 999874
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.72 E-value=0.19 Score=34.20 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=50.2
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC------CCCCCcCEEEEccCCCchHHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH------AEEGPYDIIHLGAACIEVPKEIL 80 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~------~~~~~fD~I~i~~~~~~i~~~l~ 80 (156)
+++..+ ..+|+++|++++..+.+++. |.+. .+...+..+.. ...+.+|.+|-..+.+...+...
T Consensus 47 ~~~~~g-~~~Vi~~~~~~~k~~~a~~~-----Ga~~----~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~ 116 (176)
T d2jhfa2 47 GCKAAG-AARIIGVDINKDKFAKAKEV-----GATE----CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL 116 (176)
T ss_dssp HHHHTT-CSEEEEECSCGGGHHHHHHT-----TCSE----EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred HHHHcC-CceEEeecCcHHHHHHHHHh-----CCee----EEecCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHH
Confidence 345554 37999999999999988754 3221 11112221111 11246999999988888888788
Q ss_pred hhCCCCcEEEEEec
Q psy14971 81 AQLKPGGRLVFHKG 94 (156)
Q Consensus 81 ~~L~pGGrLv~~~~ 94 (156)
..++.||..++..+
T Consensus 117 ~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 117 SCCQEAYGVSVIVG 130 (176)
T ss_dssp HHBCTTTCEEEECS
T ss_pred HHHhcCCcceEEec
Confidence 88888755555444
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.69 E-value=0.12 Score=34.74 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=49.0
Q ss_pred chHHHH-HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCC-----CCCcCEEEEccCCCch
Q psy14971 2 GDLNVI-VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAE-----EGPYDIIHLGAACIEV 75 (156)
Q Consensus 2 G~la~l-a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~-----~~~fD~I~i~~~~~~i 75 (156)
|.+++. +...| .+|++++.+++.++.+++ +|.+. +.....+.... ...+|.++.+......
T Consensus 40 G~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~-----~Ga~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 106 (168)
T d1rjwa2 40 GHVAVQYAKAMG--LNVVAVDIGDEKLELAKE-----LGADL------VVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA 106 (168)
T ss_dssp HHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-----TTCSE------EECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred hhhhhHHHhcCC--CeEeccCCCHHHhhhhhh-----cCcce------ecccccchhhhhcccccCCCceEEeecCCHHH
Confidence 445543 44444 689999999999887764 35432 11111111110 1335666666666666
Q ss_pred HHHHHhhCCCCcEEEEEec
Q psy14971 76 PKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~~~ 94 (156)
.+...+.|+|||++++.-.
T Consensus 107 ~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 107 FQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp HHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHHhccCCceEeccc
Confidence 6778899999999998543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.53 E-value=0.36 Score=32.43 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEc-cCCCCC------CCCCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVK-DGSKGH------AEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~g-D~~~~~------~~~~~fD~I~i~~~~~ 73 (156)
|.+++ +++..|. ..|+++|.+++..+.|++ +|.+. ++.- +..+.. .....+|.||-..+..
T Consensus 41 G~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~-----lGa~~-----~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~ 109 (176)
T d2fzwa2 41 GLAVIMGCKVAGA-SRIIGVDINKDKFARAKE-----FGATE-----CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV 109 (176)
T ss_dssp HHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH-----HTCSE-----EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred HHHHHHHHHHHhc-CceEEEcccHHHHHHHHH-----hCCcE-----EEeCCchhhHHHHHHHHHcCCCCcEeeecCCCH
Confidence 34454 4666664 789999999999888874 35432 2211 111110 1135699999998888
Q ss_pred chHHHHHhhCCCCcEEEEEecc
Q psy14971 74 EVPKEILAQLKPGGRLVFHKGL 95 (156)
Q Consensus 74 ~i~~~l~~~L~pGGrLv~~~~~ 95 (156)
...+.....+++||++++....
T Consensus 110 ~~~~~~~~~~~~g~~~~~v~~~ 131 (176)
T d2fzwa2 110 KVMRAALEACHKGWGVSVVVGV 131 (176)
T ss_dssp HHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHHHHHhhcCCceeEEEEee
Confidence 8888888999999888876543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.26 Score=33.41 Aligned_cols=76 Identities=8% Similarity=-0.020 Sum_probs=48.3
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccC--CCC---CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDG--SKG---HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~--~~~---~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| ++|++++.+++..+.+++ +|.+. + +-..+. .+. ......+|.|+-..+ .+..+...+
T Consensus 48 lak~~G--a~Vi~~~~s~~k~~~~~~-----lGa~~---v-i~~~~~d~~~~v~~~t~g~g~d~v~d~~g-~~~~~~~~~ 115 (179)
T d1qora2 48 WAKALG--AKLIGTVGTAQKAQSALK-----AGAWQ---V-INYREEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLD 115 (179)
T ss_dssp HHHHHT--CEEEEEESSHHHHHHHHH-----HTCSE---E-EETTTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHH
T ss_pred HHHHhC--CeEeecccchHHHHHHHh-----cCCeE---E-EECCCCCHHHHHHHHhCCCCeEEEEeCcc-HHHHHHHHH
Confidence 466665 799999999999888763 35432 1 111111 000 012356898776665 445567788
Q ss_pred hCCCCcEEEEEec
Q psy14971 82 QLKPGGRLVFHKG 94 (156)
Q Consensus 82 ~L~pGGrLv~~~~ 94 (156)
.|+++|++++...
T Consensus 116 ~l~~~G~~v~~g~ 128 (179)
T d1qora2 116 CLQRRGLMVSFGN 128 (179)
T ss_dssp TEEEEEEEEECCC
T ss_pred HHhcCCeeeeccc
Confidence 9999999888544
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.95 E-value=0.13 Score=35.83 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=52.0
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCCCCCCcCEEEEccCCCc------hHHHHHh
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHAEEGPYDIIHLGAACIE------VPKEILA 81 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~~~~~fD~I~i~~~~~~------i~~~l~~ 81 (156)
|..+| +.|+.+|.+++.++..+..+.. + ++....+-..........|.|+..+-.+. +.++..+
T Consensus 51 A~~lG--A~V~~~D~~~~~l~~l~~~~~~-----~---~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~ 120 (168)
T d1pjca1 51 AVGLG--AQVQIFDINVERLSYLETLFGS-----R---VELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVE 120 (168)
T ss_dssp HHHTT--CEEEEEESCHHHHHHHHHHHGG-----G---SEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHT
T ss_pred HhhCC--CEEEEEeCcHHHHHHHHHhhcc-----c---ceeehhhhhhHHHhhccCcEEEEeeecCCcccCeeecHHHHh
Confidence 44555 8999999999999887766544 2 45554432111111245799998876542 4578899
Q ss_pred hCCCCcEEEEEecc
Q psy14971 82 QLKPGGRLVFHKGL 95 (156)
Q Consensus 82 ~L~pGGrLv~~~~~ 95 (156)
.+|||..+|=...+
T Consensus 121 ~Mk~GSVIVDvaid 134 (168)
T d1pjca1 121 QMRTGSVIVDVAVD 134 (168)
T ss_dssp TSCTTCEEEETTCT
T ss_pred hcCCCcEEEEeecC
Confidence 99999887755443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.88 E-value=0.32 Score=33.95 Aligned_cols=80 Identities=10% Similarity=0.026 Sum_probs=48.0
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC------CCCCCCcCEEEEccCCC-
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG------HAEEGPYDIIHLGAACI- 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~------~~~~~~fD~I~i~~~~~- 73 (156)
|.+++ +|++.+. .+|+++|.+++.++.|++. |.+. ++....... ......+|++|-..+.+
T Consensus 38 Gl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~-----Ga~~-----~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~~ 106 (195)
T d1kola2 38 GLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ-----GFEI-----ADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEA 106 (195)
T ss_dssp HHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT-----TCEE-----EETTSSSCHHHHHHHHHSSSCEEEEEECCCTTC
T ss_pred HHHHHHHHHhhcc-cceeeecccchhhHhhhhc-----cccE-----EEeCCCcCHHHHHHHHhCCCCcEEEEECccccc
Confidence 33444 3555553 7999999999999988743 4311 111111100 11234589888655422
Q ss_pred --------------chHHHHHhhCCCCcEEEEE
Q psy14971 74 --------------EVPKEILAQLKPGGRLVFH 92 (156)
Q Consensus 74 --------------~i~~~l~~~L~pGGrLv~~ 92 (156)
...+...+.++|||++++.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 107 RGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp BCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred cCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 2335678899999999986
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.86 E-value=0.51 Score=32.14 Aligned_cols=81 Identities=14% Similarity=0.005 Sum_probs=50.8
Q ss_pred chHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-------CCCCCcCEEEEccCCC
Q psy14971 2 GDLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-------AEEGPYDIIHLGAACI 73 (156)
Q Consensus 2 G~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-------~~~~~fD~I~i~~~~~ 73 (156)
|.+++ ++++.|. .+|+++|++++.++.|++ +|.+. ++.-.-.+.+ ...+.+|.+|-.....
T Consensus 40 Gl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~-----lGa~~-----~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 40 GFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE-----LGATE-----CLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 108 (174)
T ss_dssp HHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH-----TTCSE-----EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred hHHHHHHHHHcCC-ceeeccCChHHHHHHHHH-----cCCcE-----EEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCc
Confidence 33444 4566664 789999999999999874 35432 2211111111 1134699999988877
Q ss_pred chHHHHHhhCCC-CcEEEEEe
Q psy14971 74 EVPKEILAQLKP-GGRLVFHK 93 (156)
Q Consensus 74 ~i~~~l~~~L~p-GGrLv~~~ 93 (156)
.........+++ +|++++.-
T Consensus 109 ~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 109 ETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp HHHHHHHHTBCTTTCEEEECC
T ss_pred hHHHHHHHHHHHhcCceEEEE
Confidence 766666666655 68988754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.60 E-value=0.5 Score=31.88 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=48.4
Q ss_pred hHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC---CC---CCCCCcCEEEEccCCCch
Q psy14971 3 DLNV-IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK---GH---AEEGPYDIIHLGAACIEV 75 (156)
Q Consensus 3 ~la~-la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~---~~---~~~~~fD~I~i~~~~~~i 75 (156)
.+++ +|...| .+|+++..+++-.+.++ + +|.+. + +.-+-.+ .. .....||.||-+.+- ..
T Consensus 40 ~~~iqla~~~g--~~vi~~~~~~~~~~~l~----~-~Ga~~---v--i~~~~~~~~~~v~~~t~~~g~d~v~d~~g~-~~ 106 (183)
T d1pqwa_ 40 MAAVSIAKMIG--ARIYTTAGSDAKREMLS----R-LGVEY---V--GDSRSVDFADEILELTDGYGVDVVLNSLAG-EA 106 (183)
T ss_dssp HHHHHHHHHHT--CEEEEEESSHHHHHHHH----T-TCCSE---E--EETTCSTHHHHHHHHTTTCCEEEEEECCCT-HH
T ss_pred cccchhhcccc--ccceeeecccccccccc----c-ccccc---c--ccCCccCHHHHHHHHhCCCCEEEEEecccc-hH
Confidence 3443 466665 79999988887766655 4 36533 2 2211111 00 112469999987775 44
Q ss_pred HHHHHhhCCCCcEEEEE
Q psy14971 76 PKEILAQLKPGGRLVFH 92 (156)
Q Consensus 76 ~~~l~~~L~pGGrLv~~ 92 (156)
.+..++.|+++|+++..
T Consensus 107 ~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 107 IQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 55678999999999985
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=88.45 E-value=0.22 Score=34.37 Aligned_cols=79 Identities=8% Similarity=-0.063 Sum_probs=46.7
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEE-ccCCCCCC--------CCCCcCEEEEccCCCchHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSV-KDGSKGHA--------EEGPYDIIHLGAACIEVPK 77 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~-gD~~~~~~--------~~~~fD~I~i~~~~~~i~~ 77 (156)
+|++.| .+|+++=..++-.+...+.++. +|.+. +-... .|..+... ....+|.+|=..+ .....
T Consensus 49 lAk~~G--a~vI~~v~~~~~~~~~~~~~~~-lGad~---vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg-~~~~~ 121 (189)
T d1gu7a2 49 IGKLLN--FNSISVIRDRPNLDEVVASLKE-LGATQ---VITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVG-GKSST 121 (189)
T ss_dssp HHHHHT--CEEEEEECCCTTHHHHHHHHHH-HTCSE---EEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSC-HHHHH
T ss_pred HHhhcC--CeEEEEEecccccchHHhhhhh-ccccE---EEeccccchhHHHHHHHHHHhhccCCceEEEECCC-cchhh
Confidence 577776 6888886666655555566666 57654 21111 11111000 1245888885444 33445
Q ss_pred HHHhhCCCCcEEEEE
Q psy14971 78 EILAQLKPGGRLVFH 92 (156)
Q Consensus 78 ~l~~~L~pGGrLv~~ 92 (156)
...+.|+++|++|..
T Consensus 122 ~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 122 GIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHTSCTTCEEEEC
T ss_pred hhhhhhcCCcEEEEE
Confidence 678999999999874
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=87.86 E-value=0.1 Score=38.45 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=35.4
Q ss_pred CchHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCC
Q psy14971 1 MGDLNVIVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKG 56 (156)
Q Consensus 1 ~G~la~la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~ 56 (156)
.|.||... +....+|+++|+|+.+++..+++... .+| ++++.+|+.+.
T Consensus 32 ~G~LT~~L--l~~~~~v~aiEiD~~l~~~L~~~~~~---~~~---~~ii~~D~l~~ 79 (252)
T d1qyra_ 32 LAALTEPV--GERLDQLTVIELDRDLAARLQTHPFL---GPK---LTIYQQDAMTF 79 (252)
T ss_dssp TTTTHHHH--HTTCSCEEEECCCHHHHHHHHTCTTT---GGG---EEEECSCGGGC
T ss_pred chHHHHHH--HccCCceEEEEeccchhHHHHHHhhh---ccc---hhHHhhhhhhh
Confidence 36666432 22247999999999999999876543 246 99999999763
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.06 E-value=0.55 Score=31.94 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCC--C---CCCCCCcCEEEEccCCCchHHHHHh
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSK--G---HAEEGPYDIIHLGAACIEVPKEILA 81 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~--~---~~~~~~fD~I~i~~~~~~i~~~l~~ 81 (156)
+|+..| ++|+++..+++..+.+++ +|.+. + +...|-.. . ......+|.||-..+ .+..+..++
T Consensus 49 lak~~G--a~vi~~~~~~~~~~~~~~-----~Ga~~---v-i~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-~~~~~~~~~ 116 (182)
T d1v3va2 49 IAKLKG--CKVVGAAGSDEKIAYLKQ-----IGFDA---A-FNYKTVNSLEEALKKASPDGYDCYFDNVG-GEFLNTVLS 116 (182)
T ss_dssp HHHHTT--CEEEEEESSHHHHHHHHH-----TTCSE---E-EETTSCSCHHHHHHHHCTTCEEEEEESSC-HHHHHHHGG
T ss_pred HHHccC--CEEEEeCCCHHHHHHHHh-----hhhhh---h-cccccccHHHHHHHHhhcCCCceeEEecC-chhhhhhhh
Confidence 466665 799999999987766553 35432 2 22222110 0 012346999888766 455667899
Q ss_pred hCCCCcEEEEE
Q psy14971 82 QLKPGGRLVFH 92 (156)
Q Consensus 82 ~L~pGGrLv~~ 92 (156)
.|++||+++..
T Consensus 117 ~l~~~G~~v~~ 127 (182)
T d1v3va2 117 QMKDFGKIAIC 127 (182)
T ss_dssp GEEEEEEEEEC
T ss_pred hccCCCeEEee
Confidence 99999999985
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=86.66 E-value=1.6 Score=28.97 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCCC-------CCCCcCEEEEccCCCchHHHH
Q psy14971 7 IVGIKGERALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGHA-------EEGPYDIIHLGAACIEVPKEI 79 (156)
Q Consensus 7 la~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~~-------~~~~fD~I~i~~~~~~i~~~l 79 (156)
++...+ ...|+++|.+++.++.|++ +|.+. ++.-+-..... ....+|.++-..+........
T Consensus 47 ~~~~~g-~~~Vi~~~~~~~rl~~a~~-----~GAd~-----~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a 115 (175)
T d1cdoa2 47 GCHSAG-AKRIIAVDLNPDKFEKAKV-----FGATD-----FVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNA 115 (175)
T ss_dssp HHHHTT-CSEEEEECSCGGGHHHHHH-----TTCCE-----EECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHH
T ss_pred HHHHHh-hchheeecchHHHHHHHHH-----cCCcE-----EEcCCCcchhHHHHHHhhccCCcceeeeecCCHHHHHHH
Confidence 344544 3789999999999888773 36432 22211111110 124689999988887777777
Q ss_pred HhhCCCCcEEEEEecc
Q psy14971 80 LAQLKPGGRLVFHKGL 95 (156)
Q Consensus 80 ~~~L~pGGrLv~~~~~ 95 (156)
...+++||..++..+.
T Consensus 116 ~~~~~~g~~~~~~~g~ 131 (175)
T d1cdoa2 116 LESCLKGWGVSVLVGW 131 (175)
T ss_dssp HHTBCTTTCEEEECSC
T ss_pred HHHhhCCCcceeEEEe
Confidence 7777776555554543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.15 E-value=0.76 Score=33.27 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC----------CCCCCcCEEEEccCCCch-------H
Q psy14971 14 RALVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH----------AEEGPYDIIHLGAACIEV-------P 76 (156)
Q Consensus 14 ~g~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~----------~~~~~fD~I~i~~~~~~i-------~ 76 (156)
+.+|+..+++++.++.+.+.++. .+ .+ +.++..|..+.- ...++.|.++.+++.... .
T Consensus 28 g~~Vi~~~r~~~~~~~~~~~l~~-~~-~~---~~~~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~ 102 (275)
T d1wmaa1 28 SGDVVLTARDVTRGQAAVQQLQA-EG-LS---PRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFH 102 (275)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHH-TT-CC---CEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHh-cC-Cc---EEEEEEecCCHHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCH
Confidence 47999999999999999999987 35 35 889999986521 112679999999976311 0
Q ss_pred ------------------HHHHhhCCCCcEEEEEe
Q psy14971 77 ------------------KEILAQLKPGGRLVFHK 93 (156)
Q Consensus 77 ------------------~~l~~~L~pGGrLv~~~ 93 (156)
..+...|+++|++|...
T Consensus 103 ~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 103 IQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 13467778999988764
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.68 E-value=1.4 Score=28.29 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=42.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhhcCCCCccceEEEEccCCCCC-------CCCCCcCEEEEccCCCchH
Q psy14971 16 LVLILNHYMKVKSKNQNNKKLNIKQNRKSFKNVSVKDGSKGH-------AEEGPYDIIHLGAACIEVP 76 (156)
Q Consensus 16 ~V~avD~~~~~~~~A~~~l~~~~g~~n~~~v~~~~gD~~~~~-------~~~~~fD~I~i~~~~~~i~ 76 (156)
+|.-+|-++...+..++.+++ .|+.+ |.. ..|+.+.+ ....+||.|+++...+.+.
T Consensus 3 rVLvVDD~~~~~~~l~~~L~~-~g~~~---v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~d 65 (128)
T d2r25b1 3 KILVVEDNHVNQEVIKRMLNL-EGIEN---IEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVD 65 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHH-TTCCC---EEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSC
T ss_pred EEEEEeCCHHHHHHHHHHHHH-cCCeE---EEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCC
Confidence 788999999999999999998 58766 654 34554432 1246899999999988654
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| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=81.14 E-value=0.76 Score=32.15 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=47.6
Q ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHhhhcCC--CCccceEEEEccCCCCCCC------------CCCcCEEEEccCCC
Q psy14971 8 VGIKGERALVLILNHYMKVKSKNQNNKKLNIKQ--NRKSFKNVSVKDGSKGHAE------------EGPYDIIHLGAACI 73 (156)
Q Consensus 8 a~l~g~~g~V~avD~~~~~~~~A~~~l~~~~g~--~n~~~v~~~~gD~~~~~~~------------~~~fD~I~i~~~~~ 73 (156)
|..+| +.|+.+|++++.++..++...+++.+ .+....+-..+.+.+...+ ...-|.|+.++-.+
T Consensus 48 A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talip 125 (183)
T d1l7da1 48 AKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIP 125 (183)
T ss_dssp HHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCT
T ss_pred HHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecC
Confidence 44455 89999999999998888765442111 0000011111111111000 13569999988665
Q ss_pred c------hHHHHHhhCCCCcEEEEEec
Q psy14971 74 E------VPKEILAQLKPGGRLVFHKG 94 (156)
Q Consensus 74 ~------i~~~l~~~L~pGGrLv~~~~ 94 (156)
. +.+.+.+.+|||..+|=...
T Consensus 126 G~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 126 GKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp TSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred CcccceeehHHHHHhcCCCcEEEEEee
Confidence 2 45789999999998876543
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