Psyllid ID: psy14982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
IDLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFEQEFSADDK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccHcHcccccc
Coil and Loop (DISEMBL)
IDLEDPETEKAATKIQAVFRdidledpetEKAATKIQAVFRGHKTRKDIeetmktgddetqnFEQEFSADDK
Flexible Loop (DISEMBL)
idledpetekaatkiqavfrdidledpetekaatkiqavfrghktrkdieetmktgddetqnfeqefsaddk
Low Complexity Region (SEG)
IDLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFEQEFSADDK
Disordered region (IsUnstruct)
************************************************************************
Disordered Region (DISOPRED)
***********************LEDPETEKAATKIQAVFR*******************************
Disordered Region (DISEMBL)
**********AATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFE********
Disordered Region (DISPRO)
IDLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETM*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IDLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFEQEFSADDK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
291240019	1009	PREDICTED: obscurin, cytoskeletal calmod	0.666	0.047	0.493	1e-09
405961240	567	Sperm surface protein Sp17 [Crassostrea	0.694	0.088	0.448	2e-07
196002918	134	hypothetical protein TRIADDRAFT_23698 [T	0.666	0.358	0.447	6e-07
291243872	1701	PREDICTED: twitchin-like [Saccoglossus k	0.708	0.029	0.472	1e-06
156398247	147	predicted protein [Nematostella vectensi	0.833	0.408	0.463	1e-06
291233642	853	PREDICTED: sperm autoantigenic protein 1	0.763	0.064	0.419	1e-06
242005124	158	hypothetical protein Phum_PHUM058020 [Pe	0.75	0.341	0.5	1e-06
313221585	520	unnamed protein product [Oikopleura dioi	0.680	0.094	0.361	2e-05
313221804	320	unnamed protein product [Oikopleura dioi	0.680	0.153	0.361	2e-05
260787769	458	hypothetical protein BRAFLDRAFT_125431 [	0.680	0.106	0.37	3e-05

>gi|291240019|ref|XP_002739918.1| PREDICTED: obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF-like [Saccoglossus kowalevskii]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 41/83 (49%), Gaps = 35/83 (42%)

Query: 1   IDLEDPETEKAATKIQAVFR-----------------------------------DIDLE 25
           IDLEDPE  KAATKIQA FR                                   DIDLE
Sbjct: 601 IDLEDPEVAKAATKIQASFRGHKARKDTKDEVVKKAEKAEVVKTESAKPAEDEEIDIDLE 660

Query: 26  DPETEKAATKIQAVFRGHKTRKD 48
           DPE  KAATKIQA FRGHK RKD
Sbjct: 661 DPEVAKAATKIQASFRGHKARKD 683

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|405961240|gb|EKC27073.1| Sperm surface protein Sp17 [Crassostrea gigas]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 43/78 (55%), Gaps = 28/78 (35%)

Query: 1   IDLEDPETEKAATKIQAVFR----------------------------DIDLEDPETEKA 32
           IDL DP+ E+AA KIQA F+                            DIDL DPE EKA
Sbjct: 485 IDLNDPDVEQAALKIQAGFKGYQARKEIKDKMSNTEAKEKGVKEEEEVDIDLNDPEVEKA 544

Query: 33  ATKIQAVFRGHKTRKDIE 50
           ATKIQA F+G+KTRK+++
Sbjct: 545 ATKIQAGFKGYKTRKEMQ 562

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|196002918|ref|XP_002111326.1| hypothetical protein TRIADDRAFT_23698 [Trichoplax adhaerens] gi|190585225|gb|EDV25293.1| hypothetical protein TRIADDRAFT_23698 [Trichoplax adhaerens]

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 37/76 (48%), Gaps = 28/76 (36%)

Query: 1   IDLEDPETEKAATKIQAVFR----------------------------DIDLEDPETEKA 32
           ID++DPE  KAA KIQA FR                            DIDL DPE  KA
Sbjct: 47  IDMDDPELNKAAIKIQASFRGHASRKDMQKKAESQADLKPEESKEEDIDIDLNDPEVSKA 106

Query: 33  ATKIQAVFRGHKTRKD 48
           A KIQA FRGH  RK+
Sbjct: 107 AIKIQATFRGHAARKN 122

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|291243872|ref|XP_002741823.1| PREDICTED: twitchin-like [Saccoglossus kowalevskii]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 21/72 (29%)

Query: 1    IDLEDPETEKAATKIQAVFR---------------------DIDLEDPETEKAATKIQAV 39
            IDL+DPE E AA KIQA F+                     DIDL+DPE E AA KIQA 
Sbjct: 1359 IDLDDPEVEAAAVKIQAGFKGLKARKQIKEEKIEASEEEVIDIDLDDPEVEAAAVKIQAG 1418

Query: 40   FRGHKTRKDIEE 51
            F+G K R+ I+E
Sbjct: 1419 FKGLKARRHIKE 1430

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156398247|ref|XP_001638100.1| predicted protein [Nematostella vectensis] gi|156225218|gb|EDO46037.1| predicted protein [Nematostella vectensis]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 9/69 (13%)

Query: 1   IDLEDPETEKAATKIQAVFRDIDLEDP---------ETEKAATKIQAVFRGHKTRKDIEE 51
           ID++DPE +KAATKIQA FR     +          E E AA KIQ+ FRGHK R++++E
Sbjct: 75  IDIDDPEVQKAATKIQASFRGHKTREQIKQDKQQKDEEEAAALKIQSSFRGHKAREEVKE 134

Query: 52  TMKTGDDET 60
            MK+   E+
Sbjct: 135 LMKSKSRES 143

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|291233642|ref|XP_002736761.1| PREDICTED: sperm autoantigenic protein 17-like [Saccoglossus kowalevskii]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 43/81 (53%), Gaps = 26/81 (32%)

Query: 1   IDLEDPETEKAATKIQAVFR--------------------------DIDLEDPETEKAAT 34
           IDL+DP+ EKAA KIQA F+                          DIDL DPE EKAA 
Sbjct: 492 IDLDDPDVEKAAVKIQASFKGFKARKQVKDMQNEPEAAKPAEEEEVDIDLNDPEVEKAAV 551

Query: 35  KIQAVFRGHKTRKDIEETMKT 55
           KIQA F+G K R+++++  K 
Sbjct: 552 KIQAGFKGLKARREVKDLKKV 572

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|242005124|ref|XP_002423423.1| hypothetical protein Phum_PHUM058020 [Pediculus humanus corporis] gi|212506492|gb|EEB10685.1| hypothetical protein Phum_PHUM058020 [Pediculus humanus corporis]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 12/66 (18%)

Query: 15 IQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDE--------TQNFEQE 66
          +  +  DIDL DP   KAATKIQA FRGH+TRK    TMK GD E         QN  +E
Sbjct: 15 LALIVGDIDLNDPTANKAATKIQAAFRGHQTRK----TMKQGDAEPQQQQQQQQQNLNEE 70

Query: 67 FSADDK 72
          F+A++K
Sbjct: 71 FNAENK 76

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|313221585|emb|CBY36077.1| unnamed protein product [Oikopleura dioica] gi|313234588|emb|CBY10543.1| unnamed protein product [Oikopleura dioica]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 40/94 (42%), Gaps = 45/94 (47%)

Query: 1   IDLEDPETEKAATKIQAVFR---------------------------------------- 20
           IDL DP TE AA KIQA FR                                        
Sbjct: 140 IDLNDPATEDAAVKIQAAFRGHQVRKDMNIEDASPGDENKDQQIGDAVPSQHDKLEEDKP 199

Query: 21  -----DIDLEDPETEKAATKIQAVFRGHKTRKDI 49
                DIDL DP TE+AA KIQ+ FRGH+TR+++
Sbjct: 200 KEEEIDIDLSDPATEEAALKIQSAFRGHQTRQEL 233

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313221804|emb|CBY38884.1| unnamed protein product [Oikopleura dioica]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 40/94 (42%), Gaps = 45/94 (47%)

Query: 1   IDLEDPETEKAATKIQAVFR---------------------------------------- 20
           IDL DP TE AA KIQA FR                                        
Sbjct: 140 IDLNDPATEDAAVKIQAAFRGHQVRKDMNIEDASPGDENKDQQIGDAVPSQHDKLEEDKP 199

Query: 21  -----DIDLEDPETEKAATKIQAVFRGHKTRKDI 49
                DIDL DP TE+AA KIQ+ FRGH+TR+++
Sbjct: 200 KEEEIDIDLSDPATEEAALKIQSAFRGHQTRQEL 233

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260787769|ref|XP_002588924.1| hypothetical protein BRAFLDRAFT_125431 [Branchiostoma floridae] gi|229274096|gb|EEN44935.1| hypothetical protein BRAFLDRAFT_125431 [Branchiostoma floridae]

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 41/100 (41%), Gaps = 51/100 (51%)

Query: 1   IDLEDPETEKAATKIQAVFR---------------------------------------- 20
           IDL DPETEKAA KIQA F+                                        
Sbjct: 238 IDLNDPETEKAALKIQAGFKGYKVRKGITKETKEEPAKEEPPKEEEKAEEVSEQKEAEEK 297

Query: 21  -----------DIDLEDPETEKAATKIQAVFRGHKTRKDI 49
                      DIDL DPETEKAA KIQA F+G+K RK +
Sbjct: 298 KEDKKEEEEEIDIDLNDPETEKAAIKIQAGFKGYKARKGM 337

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0013467	240	igl "igloo" [Drosophila melano	0.611	0.183	0.622	3.1e-08
ZFIN|ZDB-GENE-061027-337	660	zgc:153721 "zgc:153721" [Danio	0.875	0.095	0.412	2.9e-07
ZFIN|ZDB-GENE-070112-1912	188	nrgnb "neurogranin (protein ki	0.611	0.234	0.522	1.1e-06
UNIPROTKB|P35722	78	NRGN "Neurogranin" [Bos taurus	0.597	0.551	0.511	3.9e-05
UNIPROTKB|Q92686	78	NRGN "Neurogranin" [Homo sapie	0.597	0.551	0.511	3.9e-05
MGI|MGI:1927184	78	Nrgn "neurogranin" [Mus muscul	0.597	0.551	0.511	3.9e-05
RGD|61833	78	Nrgn "neurogranin" [Rattus nor	0.597	0.551	0.511	3.9e-05
UNIPROTKB|J9NRV5	151	SPA17 "Uncharacterized protein	0.791	0.377	0.389	5e-05
UNIPROTKB|F1MI43	147	SPA17 "Uncharacterized protein	0.791	0.387	0.380	0.00013
WB|WBGene00018214	210	F39H12.3 [Caenorhabditis elega	0.694	0.238	0.456	0.0002

FB|FBgn0013467 igl "igloo" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 28/45 (62%), Positives = 32/45 (71%)

Query:     4 EDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKD 48
             ED + ++   K+ A   DIDL DPE  KAATKIQA FRGHKTRKD
Sbjct:   193 EDEDIQEITKKV-AEELDIDLTDPELNKAATKIQASFRGHKTRKD 236

GO:0005516 "calmodulin binding" evidence=IDA

GO:0032027 "myosin light chain binding" evidence=RCA

ZFIN|ZDB-GENE-061027-337 zgc:153721 "zgc:153721" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query:     2 DLEDPETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQ 61
             D+ +P+ E +  + +    DI L+DPE  KAA KIQA FRGH TRK ++   K G++ + 
Sbjct:   573 DISEPKEESSQPQEEEDIMDIPLDDPEANKAAAKIQAGFRGHMTRKKMKPGEKPGEEVSS 632

Query:    62 NFE 64
             + E
Sbjct:   633 SGE 635

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-070112-1912 nrgnb "neurogranin (protein kinase C substrate, RC3) b" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query:    21 DIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFE 64
             DI L+DPE  KAA KIQA FRGH TRK ++   K G++ + + E
Sbjct:    19 DIPLDDPEANKAAAKIQAGFRGHMTRKKMKPGEKPGEEVSSSGE 62

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P35722 NRGN "Neurogranin" [Bos taurus (taxid:9913)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query:     8 TEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIE 50
             TE A +K      DI L+DP    AA KIQA FRGH  RK I+
Sbjct:     5 TESACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIK 47

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|Q92686 NRGN "Neurogranin" [Homo sapiens (taxid:9606)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query:     8 TEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIE 50
             TE A +K      DI L+DP    AA KIQA FRGH  RK I+
Sbjct:     5 TENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIK 47

GO:0005516 "calmodulin binding" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:1927184 Nrgn "neurogranin" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query:     8 TEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIE 50
             TE A +K      DI L+DP    AA KIQA FRGH  RK I+
Sbjct:     5 TESACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIK 47

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=TAS

GO:0030054 "cell junction" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0045202 "synapse" evidence=IEA

RGD|61833 Nrgn "neurogranin" [Rattus norvegicus (taxid:10116)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/43 (51%), Positives = 25/43 (58%)

Query:     8 TEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIE 50
             TE A +K      DI L+DP    AA KIQA FRGH  RK I+
Sbjct:     5 TESACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIK 47

GO:0005516 "calmodulin binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|J9NRV5 SPA17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query:     6 PETEKAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQNFE 64
             P  ++  T + A F   + E    E AA KIQA FRGH  R+++++ MK+GD E +  E
Sbjct:    92 PSVKEDETPVTA-FESSEEEKQREEDAALKIQAAFRGHLAREEVKK-MKSGDAEGEKRE 148

GO:0016020 "membrane" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MI43 SPA17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query:     4 EDPETE-KAATKIQAVFRDIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKTGDDETQN 62
             E+ +T  K  T +++   D D+E    E AA KIQA FRGH  R+++++ MK+ D E + 
Sbjct:    88 ENSQTSVKEKTALESPEEDKDME----ENAALKIQAAFRGHLAREEVKK-MKSSDLEEEK 142

Query:    63 FEQ 65
              E+
Sbjct:   143 TEE 145

GO:0072372 "primary cilium" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007339 "binding of sperm to zona pellucida" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

WB|WBGene00018214 F39H12.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 94 (38.1 bits), Expect = 0.00020, P = 0.00020
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query:     1 IDLEDPETEKAATKIQAVFRD------IDLEDPETEKAATKIQAVFRGHKTRKDIEE 51
             ID++ PE ++AATKIQ+  R       +D    E   AATKIQA  RG  TRK ++E
Sbjct:   135 IDVDTPE-DRAATKIQSEIRGFLTRKHVDKMKKEDTDAATKIQAHIRGFLTRKHLDE 190

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	6e-06
smart00015	23	smart00015, IQ, Calmodulin-binding motif	2e-05

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 38.1 bits (90), Expect = 6e-06
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 30 EKAATKIQAVFRGHKTRK 47
           KAA KIQA +RG+  RK
Sbjct: 1  RKAAIKIQAAWRGYLARK 18

Calmodulin-binding motif. Length = 21

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 36.9 bits (87), Expect = 2e-05
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 28 ETEKAATKIQAVFRGHKTRK 47
             +AA  IQA +RG+  RK
Sbjct: 1  RLTRAAIIIQAAWRGYLARK 20

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	98.7
smart00015	26	IQ Short calmodulin-binding motif containing conse	98.42
PTZ00014	821	myosin-A; Provisional	97.13
KOG0520|consensus	975		96.84
KOG0520|consensus	975		96.57
smart00015	26	IQ Short calmodulin-binding motif containing conse	96.3
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.27
KOG0160|consensus	862		95.13
KOG0160|consensus	862		95.0
KOG0164|consensus	1001		93.26
KOG4427|consensus	1096		93.24
KOG2128|consensus	1401		92.83
KOG0942|consensus	1001		92.51
KOG0377|consensus	631		90.61
PTZ00014	821	myosin-A; Provisional	89.53
KOG0164|consensus	1001		88.46
COG5022	1463	Myosin heavy chain [Cytoskeleton]	87.53
KOG2128|consensus	1401		85.97
PF08763	35	Ca_chan_IQ: Voltage gated calcium channel IQ domai	80.85
KOG0162|consensus	1106		80.38

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=98.70  E-value=2.3e-08  Score=48.30  Aligned_cols=21  Identities=43%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q psy14982         30 EKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus        30 ~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      +.||+.||+.||||+.|++|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            479999999999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=98.42  E-value=2.9e-07  Score=46.20  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHH
Q psy14982         29 TEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus        29 ~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      ++.+|++||+.||||+.|+.|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4689999999999999999985

Calmodulin-binding motif.

>PTZ00014 myosin-A; Provisional

Probab=97.13  E-value=0.00031  Score=58.82  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=34.6

Q ss_pred             HHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHH
Q psy14982         10 KAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDI   49 (72)
Q Consensus        10 ~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~   49 (72)
                      ..+++||+++|||..|+  .....+++.||+.+|||+.++..
T Consensus       778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            47889999999999887  34568999999999999999764

>KOG0520|consensus

Probab=96.84  E-value=0.00028  Score=60.30  Aligned_cols=44  Identities=34%  Similarity=0.425  Sum_probs=31.1

Q ss_pred             HHHHHHHhhhhhcccccCCHHH--HHHHHHHHHHhhhHHHHHHHHH
Q psy14982          8 TEKAATKIQAVFRDIDLEDPET--EKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus         8 ~~~AAvkIQa~fRg~~vr~~~~--~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      ...||..||.+||||+-|+..+  ..=+++|||++|||+.|+.|+.
T Consensus       809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~k  854 (975)
T KOG0520|consen  809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRK  854 (975)
T ss_pred             chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhhe
Confidence            4467778888888887766432  3556777777777777777763

>KOG0520|consensus

Probab=96.57  E-value=0.0041  Score=53.40  Aligned_cols=46  Identities=15%  Similarity=0.205  Sum_probs=37.2

Q ss_pred             HHHHHHHHhhhhhcccccCC---------------------------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982          7 ETEKAATKIQAVFRDIDLED---------------------------PETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus         7 ~~~~AAvkIQa~fRg~~vr~---------------------------~~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      +...++.++|++||||+.+.                           ..+.+|+++||+.||-|..|.+|+..
T Consensus       864 k~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~  936 (975)
T KOG0520|consen  864 KLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL  936 (975)
T ss_pred             HHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34567889999999986654                           13689999999999999999998864

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=96.30  E-value=0.001  Score=33.08  Aligned_cols=19  Identities=32%  Similarity=0.282  Sum_probs=16.1

Q ss_pred             HHHHHHHhhhhhcccccCC
Q psy14982          8 TEKAATKIQAVFRDIDLED   26 (72)
Q Consensus         8 ~~~AAvkIQa~fRg~~vr~   26 (72)
                      ...+|++||+.+||+..++
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~   20 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARK   20 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4679999999999997665

Calmodulin-binding motif.

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.27  E-value=0.00091  Score=31.91  Aligned_cols=17  Identities=35%  Similarity=0.303  Sum_probs=14.5

Q ss_pred             HHHHHhhhhhcccccCC
Q psy14982         10 KAATKIQAVFRDIDLED   26 (72)
Q Consensus        10 ~AAvkIQa~fRg~~vr~   26 (72)
                      +||++||+.|||+..++
T Consensus         2 ~aai~iQ~~~R~~~~Rk   18 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARK   18 (21)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            68999999999996654

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0160|consensus

Probab=95.13  E-value=0.016  Score=49.36  Aligned_cols=40  Identities=28%  Similarity=0.204  Sum_probs=19.5

Q ss_pred             HHHHHHHhhhhhcccccCCH--HHHHHHHHHHHHhhhHHHHH
Q psy14982          8 TEKAATKIQAVFRDIDLEDP--ETEKAATKIQAVFRGHKTRK   47 (72)
Q Consensus         8 ~~~AAvkIQa~fRg~~vr~~--~~~~AAtkIQA~fRGh~~RK   47 (72)
                      +..+++.||..||||..|+.  .+..+++.||+..||+..|.
T Consensus       672 l~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~  713 (862)
T KOG0160|consen  672 LSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR  713 (862)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            34455556666666554442  33344444444444444443

>KOG0160|consensus

Probab=95.00  E-value=0.033  Score=47.52  Aligned_cols=46  Identities=28%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             HHHHHHHHhhhhhcccccCC-HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982          7 ETEKAATKIQAVFRDIDLED-PETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus         7 ~~~~AAvkIQa~fRg~~vr~-~~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ....+++.||+..||+-.|+ ...+.||+.||+.+|+|..|++|+..
T Consensus       694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~  740 (862)
T KOG0160|consen  694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL  740 (862)
T ss_pred             HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34678889999999987775 33678999999999999999998854

>KOG0164|consensus

Probab=93.26  E-value=0.078  Score=45.45  Aligned_cols=41  Identities=20%  Similarity=0.218  Sum_probs=28.6

Q ss_pred             HHHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982          9 EKAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus         9 ~~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      ..-++.||+++|||..|.  ..+..++|.|+ +||-|+.|-.+.
T Consensus       696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks~v~  738 (1001)
T KOG0164|consen  696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKSYVQ  738 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            346788888888887776  45666777776 777776655443

>KOG4427|consensus

Probab=93.24  E-value=0.12  Score=44.70  Aligned_cols=28  Identities=32%  Similarity=0.305  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEETMK   54 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~~~k   54 (72)
                      +..+.||.+||+.+|||.+||++....+
T Consensus        27 rrr~~aa~~iq~~lrsyl~Rkk~~~~I~   54 (1096)
T KOG4427|consen   27 RRREAAALFIQRVLRSYLVRKKAQIEIQ   54 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999986443

>KOG2128|consensus

Probab=92.83  E-value=0.069  Score=47.59  Aligned_cols=45  Identities=24%  Similarity=0.258  Sum_probs=35.1

Q ss_pred             HHHHHHHHhhhhhcccccCCH---------HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982          7 ETEKAATKIQAVFRDIDLEDP---------ETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus         7 ~~~~AAvkIQa~fRg~~vr~~---------~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      ....-++++|++.||+..+..         ......++||+++|+++.|+.|+.
T Consensus       590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~  643 (1401)
T KOG2128|consen  590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL  643 (1401)
T ss_pred             HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence            344567889999998877752         345788899999999999999884

>KOG0942|consensus

Probab=92.51  E-value=0.1  Score=45.19  Aligned_cols=26  Identities=31%  Similarity=0.509  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ...+++|++||+.||||+.|++.+..
T Consensus        26 rk~e~~av~vQs~~Rg~~~r~~~~~~   51 (1001)
T KOG0942|consen   26 RKQEKNAVKVQSFWRGFRVRHNQKLL   51 (1001)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999998753

>KOG0377|consensus

Probab=90.61  E-value=0.27  Score=40.37  Aligned_cols=21  Identities=33%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q psy14982         30 EKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus        30 ~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      -+||+.||.|||+|.+|-..+
T Consensus        17 ikaAilIQkWYRr~~ARle~r   37 (631)
T KOG0377|consen   17 IKAAILIQKWYRRYEARLEAR   37 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999998765

>PTZ00014 myosin-A; Provisional

Probab=89.53  E-value=0.42  Score=40.50  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         30 EKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        30 ~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ...++.||++||||+.|+.|...
T Consensus       777 ~~~~~~iq~~~r~~~~r~~~~~~  799 (821)
T PTZ00014        777 EPLVSVLEALILKIKKKRKVRKN  799 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999853

>KOG0164|consensus

Probab=88.46  E-value=0.35  Score=41.64  Aligned_cols=26  Identities=27%  Similarity=0.380  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhcc
Q psy14982         29 TEKAATKIQAVFRGHKTRKDIEETMKT   55 (72)
Q Consensus        29 ~~~AAtkIQA~fRGh~~RK~~~~~~k~   55 (72)
                      .-.-+|.||++|||++.|.+|+. ||.
T Consensus       695 l~~lvtllQK~~RG~~~R~ry~r-mka  720 (1001)
T KOG0164|consen  695 LPSLVTLLQKAWRGWLARQRYRR-MKA  720 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            45789999999999999999995 654

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=87.53  E-value=0.49  Score=42.65  Aligned_cols=31  Identities=29%  Similarity=0.496  Sum_probs=25.7

Q ss_pred             cCCHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q psy14982         24 LEDPETEKAATKIQAVFRGHKTRKDIEETMK   54 (72)
Q Consensus        24 vr~~~~~~AAtkIQA~fRGh~~RK~~~~~~k   54 (72)
                      .|+..++..++.||++|||+..|++|...++
T Consensus       739 ~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k  769 (1463)
T COG5022         739 MRDAKLDNIATRIQRAIRGRYLRRRYLQALK  769 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999986544

>KOG2128|consensus

Probab=85.97  E-value=0.92  Score=40.83  Aligned_cols=41  Identities=29%  Similarity=0.326  Sum_probs=32.2

Q ss_pred             HHHHhhhhhcccccC--C----HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         11 AATKIQAVFRDIDLE--D----PETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        11 AAvkIQa~fRg~~vr--~----~~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      .-+.||+..||+.+-  +    .....-++++|+++|||++|+.+..
T Consensus       567 ~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~  613 (1401)
T KOG2128|consen  567 FVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSR  613 (1401)
T ss_pred             hHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence            456788888887631  1    3456889999999999999999875

>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers

Probab=80.85  E-value=2.3  Score=23.25  Aligned_cols=19  Identities=47%  Similarity=0.546  Sum_probs=16.6

Q ss_pred             HHHHHHHHhhhHHHHHHHH
Q psy14982         32 AATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus        32 AAtkIQA~fRGh~~RK~~~   50 (72)
                      |+..||-.||-++.|+.-.
T Consensus        11 At~lI~dyfr~~K~rk~~~   29 (35)
T PF08763_consen   11 ATLLIQDYFRQFKKRKEQE   29 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8899999999999998743

Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....

>KOG0162|consensus

Probab=80.38  E-value=1.6  Score=38.01  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             CCHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         25 EDPETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        25 r~~~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      |++.-+-.|.+||.+||-|..|++|..
T Consensus       691 Rer~~d~~A~~IQkAWRrfv~rrky~k  717 (1106)
T KOG0162|consen  691 RERKWDGMARRIQKAWRRFVARRKYEK  717 (1106)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344557899999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	1e-04

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 35.2 bits (82), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 16/56 (28%)

Query: 9  EKAATKIQAVFR---------DIDLEDPETEKAATKIQAVFRGHKTRKDIEETMKT 55
            A  +IQ   R          +       ++AA  +Q   RG++ R   +   +T
Sbjct: 5  RAACIRIQKTIRGWLLRKRYLCM-------QRAAITVQRYVRGYQARCYAKFLRRT 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.32
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	99.26
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.27
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.15
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	98.06
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.04
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.96
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.84
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.72
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.67
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.56
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.06
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.94
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	96.82
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	96.56
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.26
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	96.22
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	96.17
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	95.16
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	94.97
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	91.95
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	85.37

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.32  E-value=9.3e-13  Score=75.45  Aligned_cols=46  Identities=24%  Similarity=0.219  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982          7 ETEKAATKIQAVFRDIDLEDP--ETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus         7 ~~~~AAvkIQa~fRg~~vr~~--~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ....||++||+.||||..++.  .+..||+.||+.||||.+|+.|...
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~   50 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL   50 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999988884  5678999999999999999999853

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.4e-12  Score=71.19  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=35.3

Q ss_pred             HHHHHHhhhhhcccccCCH----HHHHHHHHHHHHhhhHHHHHHH
Q psy14982          9 EKAATKIQAVFRDIDLEDP----ETEKAATKIQAVFRGHKTRKDI   49 (72)
Q Consensus         9 ~~AAvkIQa~fRg~~vr~~----~~~~AAtkIQA~fRGh~~RK~~   49 (72)
                      ..+++.||+.+||+..+..    ..+.||++||+.||||..|+.|
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            4689999999999988873    2345999999999999999986

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.27  E-value=4.1e-07  Score=75.68  Aligned_cols=42  Identities=26%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             HHHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982          9 EKAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus         9 ~~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      ..||++||++||||..|+  ..+..+++.||++||||.+|+.|+
T Consensus       816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~  859 (1080)
T 2dfs_A          816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ  859 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666665554  234455556666666666655555

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.15  E-value=9.2e-07  Score=73.58  Aligned_cols=22  Identities=32%  Similarity=0.175  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHH
Q psy14982         30 EKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        30 ~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      ..||++||+.||||+.|+.|..
T Consensus       816 ~~AAi~IQs~~Rg~~~Rk~y~~  837 (1080)
T 2dfs_A          816 TRAAIIIQKFQRMYVVRKRYQC  837 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHhhHHHHHHHHH
Confidence            5677777777777777777764

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=98.06  E-value=3.1e-06  Score=43.23  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKD   48 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~   48 (72)
                      +.++.||++||.+||+|+.|..
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            4678999999999999998754

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.04  E-value=5.1e-06  Score=46.97  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         28 ETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        28 ~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      .++.||+.||+.||||..|+.|..
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~   26 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLC   26 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999995

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.96  E-value=3.9e-06  Score=44.17  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      +.++.+|+.||.+||+|+.|..++
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456899999999999999987643

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.84  E-value=1.1e-05  Score=46.57  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHhhhhhcccccCCH-----HHHHHHHHHHHHhhhHHHHHHH
Q psy14982          5 DPETEKAATKIQAVFRDIDLEDP-----ETEKAATKIQAVFRGHKTRKDI   49 (72)
Q Consensus         5 ~~~~~~AAvkIQa~fRg~~vr~~-----~~~~AAtkIQA~fRGh~~RK~~   49 (72)
                      |.......+.||+..||+-.|..     ....|+..||..+|+|..++..
T Consensus         2 d~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w   51 (64)
T 1wdc_A            2 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW   51 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            45667889999999999988763     2366888999999999998753

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.72  E-value=2.5e-05  Score=42.48  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         30 EKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        30 ~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ..+++.||+.||||..|+.+...
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~   25 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDE   25 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999853

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.67  E-value=1.3e-05  Score=65.56  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhhhhhcccccCCH-----HHHHHHHHHHHHhhhHHHHHHHH
Q psy14982          6 PETEKAATKIQAVFRDIDLEDP-----ETEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus         6 ~~~~~AAvkIQa~fRg~~vr~~-----~~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      .....++++||+++|||..|+.     ....|++.||+.||||..|+.+.
T Consensus       776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~  825 (837)
T 1kk8_A          776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  825 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence            3456789999999999988873     23679999999999999998764

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.56  E-value=3.3e-05  Score=44.53  Aligned_cols=41  Identities=22%  Similarity=0.101  Sum_probs=33.6

Q ss_pred             HHHHHHHhhhhhcccccCCH-----HHHHHHHHHHHHhhhHHHHHH
Q psy14982          8 TEKAATKIQAVFRDIDLEDP-----ETEKAATKIQAVFRGHKTRKD   48 (72)
Q Consensus         8 ~~~AAvkIQa~fRg~~vr~~-----~~~~AAtkIQA~fRGh~~RK~   48 (72)
                      .....+.||+..||+-.|..     ....|+..||..+|+|..++.
T Consensus         3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~   48 (63)
T 2bl0_A            3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN   48 (63)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45678999999999988763     236788899999999999875

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.06  E-value=0.00015  Score=60.23  Aligned_cols=42  Identities=14%  Similarity=-0.043  Sum_probs=35.2

Q ss_pred             HHHHHHHhhhhhcccccCCHH-----HHHHHHHHHHHhhhHHHHHHH
Q psy14982          8 TEKAATKIQAVFRDIDLEDPE-----TEKAATKIQAVFRGHKTRKDI   49 (72)
Q Consensus         8 ~~~AAvkIQa~fRg~~vr~~~-----~~~AAtkIQA~fRGh~~RK~~   49 (72)
                      ...+++.||+++|||..|+..     ...|++.||+.||||..|+.+
T Consensus       791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456899999999999888732     357999999999999999753

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.94  E-value=0.0013  Score=37.74  Aligned_cols=28  Identities=29%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         25 EDPETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        25 r~~~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      |+......+|.|||..|||..|+.|...
T Consensus         1 Rd~~l~~i~t~~Qa~~RG~l~R~~~~k~   28 (64)
T 1wdc_A            1 RDERLSKIISMFQAHIRGYLIRKAYKKL   28 (64)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999953

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=96.82  E-value=0.00019  Score=36.51  Aligned_cols=20  Identities=30%  Similarity=0.340  Sum_probs=16.4

Q ss_pred             HHHHHHHHHhhhhhcccccC
Q psy14982          6 PETEKAATKIQAVFRDIDLE   25 (72)
Q Consensus         6 ~~~~~AAvkIQa~fRg~~vr   25 (72)
                      +.++.||++||.+||+|..+
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~   22 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLK   22 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999998543

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=96.56  E-value=0.00035  Score=36.57  Aligned_cols=20  Identities=35%  Similarity=0.313  Sum_probs=16.6

Q ss_pred             HHHHHHHHHhhhhhcccccC
Q psy14982          6 PETEKAATKIQAVFRDIDLE   25 (72)
Q Consensus         6 ~~~~~AAvkIQa~fRg~~vr   25 (72)
                      +.++-+|++||.+||+|..+
T Consensus         3 k~Ee~aA~vIQrA~R~yl~r   22 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQ   22 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999998554

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.26  E-value=0.0032  Score=42.75  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         28 ETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        28 ~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      .-..|+++||+..|||++|++++-
T Consensus        43 yR~~~~i~iQktvR~~L~rkkhkP   66 (148)
T 3gn4_A           43 YRAEACIKMQKTIRMWLCKRRHKP   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            457999999999999999999874

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.22  E-value=0.0043  Score=35.47  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         29 TEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        29 ~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ....+|.|||..|||..|+.|...
T Consensus         3 l~~i~t~~Qa~~RG~l~R~~~~k~   26 (63)
T 2bl0_A            3 IGEIVKVVQAAARGWVERKHFRQA   26 (63)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999953

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=96.17  E-value=0.0025  Score=51.96  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ..++.+|+.||++||||+.|++|+..
T Consensus       765 ~~l~~~~~~iQ~~~Rg~l~R~~~~~~  790 (795)
T 1w7j_A          765 DKLRAACIRIQKTIRGWLMRKKYMRM  790 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999953

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=95.16  E-value=0.02  Score=39.34  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      .....||+.||.+||.|+.|+.++.
T Consensus       127 ~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          127 KHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Confidence            4578899999999999999988874

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=94.97  E-value=0.012  Score=48.28  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEET   52 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~~   52 (72)
                      ..+..+|+.||+++|||+.|++|+..
T Consensus       776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~  801 (837)
T 1kk8_A          776 ERLSKIISMFQAHIRGYLIRKAYKKL  801 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999853

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=91.95  E-value=0.058  Score=44.86  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         28 ETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        28 ~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      .+..+++.||++||||..|+.|..
T Consensus       790 ~l~~~~~~iQ~~~Rg~l~R~~~~k  813 (1184)
T 1i84_S          790 KITDVIIAFQAQCRGYLARKAFAK  813 (1184)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999985

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=85.37  E-value=0.56  Score=39.48  Aligned_cols=42  Identities=7%  Similarity=0.025  Sum_probs=29.2

Q ss_pred             HHHHHHHhhhhhcccccCC--HHHHHHHHHHHHHhhhHHHHHHHH
Q psy14982          8 TEKAATKIQAVFRDIDLED--PETEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus         8 ~~~AAvkIQa~fRg~~vr~--~~~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      ...+++.||. +|||..|+  ..+..+|+.||..+|+++.|+...
T Consensus       774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~  817 (1052)
T 4anj_A          774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAV  817 (1052)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3456666664 68887766  456778888888888887776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	0.002

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 32.4 bits (73), Expect = 0.002
 Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 5/44 (11%)

Query: 10  KAATKIQAVFR-----DIDLEDPETEKAATKIQAVFRGHKTRKD 48
           +  T  QA  R            E  ++   IQ   R     K 
Sbjct: 736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH 779

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.96
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.85
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	96.57
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	95.86
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	95.6

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.96  E-value=1e-06  Score=69.19  Aligned_cols=44  Identities=18%  Similarity=0.038  Sum_probs=37.3

Q ss_pred             HHHHHHHHhhhhhcccccCCHH-----HHHHHHHHHHHhhhHHHHHHHH
Q psy14982          7 ETEKAATKIQAVFRDIDLEDPE-----TEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus         7 ~~~~AAvkIQa~fRg~~vr~~~-----~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      ...+++++||+++|||..|+..     ...|++.||+.||||+.|+.+.
T Consensus       733 ~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~  781 (794)
T d2mysa2         733 KLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWP  781 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            4467899999999999888632     3679999999999999999864

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.85  E-value=2.3e-06  Score=67.02  Aligned_cols=44  Identities=16%  Similarity=0.101  Sum_probs=36.6

Q ss_pred             HHHHHHHHhhhhhcccccCCHH-----HHHHHHHHHHHhhhHHHHHHHH
Q psy14982          7 ETEKAATKIQAVFRDIDLEDPE-----TEKAATKIQAVFRGHKTRKDIE   50 (72)
Q Consensus         7 ~~~~AAvkIQa~fRg~~vr~~~-----~~~AAtkIQA~fRGh~~RK~~~   50 (72)
                      ...++|+.||+++|||..|+..     ...|++.||+.||||+.|++|+
T Consensus       729 ~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~  777 (789)
T d1kk8a2         729 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ  777 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            3567899999999999888732     2348999999999999999875

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=96.57  E-value=0.00063  Score=52.26  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      ..+..+|++||++||||..||+|..
T Consensus       703 ~~l~~~~~~iQ~~~R~~l~Rk~~~r  727 (730)
T d1w7ja2         703 DKLRAACIRIQKTIRGWLMRKKYMR  727 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999985

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.86  E-value=0.0023  Score=49.73  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         27 PETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        27 ~~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      ..+..+|+.||++||||..||+|+.
T Consensus       728 ~~l~~~~~~IQ~~~R~~~~Rk~y~k  752 (789)
T d1kk8a2         728 ERLSKIISMFQAHIRGYLIRKAYKK  752 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999995

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.60  E-value=0.0034  Score=48.82  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH
Q psy14982         28 ETEKAATKIQAVFRGHKTRKDIEE   51 (72)
Q Consensus        28 ~~~~AAtkIQA~fRGh~~RK~~~~   51 (72)
                      .+..+|+.||++||||..|++|+.
T Consensus       733 ~l~~~~~~IQ~~~Rg~l~Rk~~~~  756 (794)
T d2mysa2         733 KLAEIITATQARCRGFLMRVEYRA  756 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999985