Psyllid ID: psy15010


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
MDKKLDSTNSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV
cccccccccccccccccccccccccccccccccccHHccccHHHHHcccccccccccccccccccccccccccccEEEEEEccccHHHHHHHcc
ccccccccccccccccccccHHcccHHHccccccHHHHHHHHHHHHccccccccccccccHHHccccccccccccEEEEEEccHHHHHHHHHcc
mdkkldstnsnkvdvryfdesaylekgalrpgqdpyesnkynqaasdntpsnrdvpdtrhpactrhalprdlpatSVIITFHNEARSALLRSVV
mdkkldstnsnkvdvryfdesaylekGALRPGQDPYESNKYNqaasdntpsnrdvpdTRHPActrhalprdlpatSVIITFHNEARsallrsvv
MDKKLDSTNSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV
***********************************************************************LPATSVIITFHN***********
***********************************YESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV
*********SNKVDVRYFDESAYLEKGALRPGQDPYESNKY*****************RHPACTRHALPRDLPATSVIITFHNEARSALLRSVV
************VDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKKLDSTNSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query94 2.2.26 [Sep-21-2011]
Q6WV19 633 Polypeptide N-acetylgalac yes N/A 0.861 0.127 0.617 1e-24
Q6PB93 570 Polypeptide N-acetylgalac yes N/A 0.819 0.135 0.584 4e-20
Q10471 571 Polypeptide N-acetylgalac yes N/A 0.978 0.161 0.510 5e-20
Q9JJ61 558 Putative polypeptide N-ac no N/A 0.808 0.136 0.578 3e-19
Q8N428 558 Putative polypeptide N-ac no N/A 0.808 0.136 0.552 4e-17
Q8BVG5 550 Polypeptide N-acetylgalac no N/A 0.808 0.138 0.539 1e-16
Q96FL9 552 Polypeptide N-acetylgalac no N/A 0.808 0.137 0.539 2e-16
Q8I136 589 Polypeptide N-acetylgalac yes N/A 0.978 0.156 0.397 3e-13
Q8NCW6 608 Polypeptide N-acetylgalac no N/A 0.617 0.095 0.534 7e-11
Q921L8 608 Polypeptide N-acetylgalac no N/A 0.617 0.095 0.482 4e-10
>sp|Q6WV19|GALT2_DROME Polypeptide N-acetylgalactosaminyltransferase 2 OS=Drosophila melanogaster GN=pgant2 PE=2 SV=2 Back     alignment and function desciption
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query: 14  DVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLP 73
           +V YF+E+ Y+  GALR G+DPY  N++NQ ASD  PSNRD+PDTR+P C       DLP
Sbjct: 143 EVEYFNEAGYIRAGALRNGEDPYIRNRFNQEASDALPSNRDIPDTRNPMCRTKKYREDLP 202

Query: 74  ATSVIITFHNEARSALLRSVV 94
            TSVIITFHNEARS LLR++V
Sbjct: 203 ETSVIITFHNEARSTLLRTIV 223




Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. It can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties. Prefers the monoglycosylated Muc5AC-3 as substrate.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 4EC: 1
>sp|Q6PB93|GALT2_MOUSE Polypeptide N-acetylgalactosaminyltransferase 2 OS=Mus musculus GN=Galnt2 PE=2 SV=1 Back     alignment and function description
>sp|Q10471|GALT2_HUMAN Polypeptide N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=GALNT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JJ61|GLTL1_MOUSE Putative polypeptide N-acetylgalactosaminyltransferase-like protein 1 OS=Mus musculus GN=Galntl1 PE=2 SV=2 Back     alignment and function description
>sp|Q8N428|GLTL1_HUMAN Putative polypeptide N-acetylgalactosaminyltransferase-like protein 1 OS=Homo sapiens GN=GALNTL1 PE=2 SV=2 Back     alignment and function description
>sp|Q8BVG5|GLT14_MOUSE Polypeptide N-acetylgalactosaminyltransferase 14 OS=Mus musculus GN=Galnt14 PE=2 SV=2 Back     alignment and function description
>sp|Q96FL9|GLT14_HUMAN Polypeptide N-acetylgalactosaminyltransferase 14 OS=Homo sapiens GN=GALNT14 PE=2 SV=1 Back     alignment and function description
>sp|Q8I136|GALT4_CAEEL Polypeptide N-acetylgalactosaminyltransferase 4 OS=Caenorhabditis elegans GN=gly-4 PE=2 SV=2 Back     alignment and function description
>sp|Q8NCW6|GLT11_HUMAN Polypeptide N-acetylgalactosaminyltransferase 11 OS=Homo sapiens GN=GALNT11 PE=2 SV=2 Back     alignment and function description
>sp|Q921L8|GLT11_MOUSE Polypeptide N-acetylgalactosaminyltransferase 11 OS=Mus musculus GN=Galnt11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query94
195032291 640 GH11183 [Drosophila grimshawi] gi|193904 0.936 0.137 0.590 2e-24
189236651 564 PREDICTED: similar to n-acetylgalactosam 0.968 0.161 0.576 7e-24
66507571 571 PREDICTED: polypeptide N-acetylgalactosa 0.882 0.145 0.626 1e-23
340712798 571 PREDICTED: polypeptide N-acetylgalactosa 0.882 0.145 0.626 2e-23
350409232 571 PREDICTED: polypeptide N-acetylgalactosa 0.882 0.145 0.626 2e-23
383847543 571 PREDICTED: polypeptide N-acetylgalactosa 0.882 0.145 0.626 2e-23
198474621 639 GA16973 [Drosophila pseudoobscura pseudo 0.936 0.137 0.579 2e-23
195148230 638 GL19517 [Drosophila persimilis] gi|19410 0.936 0.137 0.579 2e-23
195435185 635 GK14594 [Drosophila willistoni] gi|19416 0.861 0.127 0.617 3e-23
194761420 630 GF15680 [Drosophila ananassae] gi|190616 0.861 0.128 0.604 3e-23
>gi|195032291|ref|XP_001988471.1| GH11183 [Drosophila grimshawi] gi|193904471|gb|EDW03338.1| GH11183 [Drosophila grimshawi] Back     alignment and taxonomy information
 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 66/88 (75%)

Query: 7   STNSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRH 66
           S   +  +V YFDE+ Y+ +GALR G+DPY  N++NQ ASD+ PSNR++PDTR+P C   
Sbjct: 143 SARGSGSEVEYFDETGYIRRGALRNGEDPYIRNRFNQEASDDLPSNREIPDTRNPMCRTK 202

Query: 67  ALPRDLPATSVIITFHNEARSALLRSVV 94
               DLPATSVIITFHNEARS LLR++V
Sbjct: 203 KYREDLPATSVIITFHNEARSTLLRTIV 230




Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236651|ref|XP_969621.2| PREDICTED: similar to n-acetylgalactosaminyltransferase [Tribolium castaneum] gi|270005204|gb|EFA01652.1| hypothetical protein TcasGA2_TC007223 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|66507571|ref|XP_394527.2| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2-like [Apis mellifera] gi|380015445|ref|XP_003691712.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2-like [Apis florea] Back     alignment and taxonomy information
>gi|340712798|ref|XP_003394942.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350409232|ref|XP_003488663.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383847543|ref|XP_003699412.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|198474621|ref|XP_001356764.2| GA16973 [Drosophila pseudoobscura pseudoobscura] gi|198138471|gb|EAL33829.2| GA16973 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195148230|ref|XP_002015077.1| GL19517 [Drosophila persimilis] gi|194107030|gb|EDW29073.1| GL19517 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195435185|ref|XP_002065582.1| GK14594 [Drosophila willistoni] gi|194161667|gb|EDW76568.1| GK14594 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194761420|ref|XP_001962927.1| GF15680 [Drosophila ananassae] gi|190616624|gb|EDV32148.1| GF15680 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query94
FB|FBgn0031530 633 pgant2 "polypeptide GalNAc tra 0.861 0.127 0.617 1.1e-22
ZFIN|ZDB-GENE-041111-110 565 galnt2 "UDP-N-acetyl-alpha-D-g 0.978 0.162 0.531 1.2e-19
UNIPROTKB|F1NDK8 530 GALNT2 "Uncharacterized protei 0.882 0.156 0.578 1.3e-19
UNIPROTKB|F1RG44 549 GALNT2 "Uncharacterized protei 0.978 0.167 0.532 3.9e-19
UNIPROTKB|F1P835 533 GALNT2 "Uncharacterized protei 0.978 0.172 0.521 4.6e-19
UNIPROTKB|J9P017 504 GALNT2 "Uncharacterized protei 0.957 0.178 0.533 5.1e-19
UNIPROTKB|E1BB48 571 GALNT2 "Uncharacterized protei 0.957 0.157 0.544 5.4e-19
RGD|1310692 530 Galnt2 "UDP-N-acetyl-alpha-D-g 0.978 0.173 0.510 1.6e-18
UNIPROTKB|G3V1S6 533 GALNT2 "UDP-N-acetyl-alpha-D-g 0.978 0.172 0.510 2.7e-18
UNIPROTKB|Q10471 571 GALNT2 "Polypeptide N-acetylga 0.978 0.161 0.510 3.1e-18
FB|FBgn0031530 pgant2 "polypeptide GalNAc transferase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 271 (100.5 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 50/81 (61%), Positives = 61/81 (75%)

Query:    14 DVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLP 73
             +V YF+E+ Y+  GALR G+DPY  N++NQ ASD  PSNRD+PDTR+P C       DLP
Sbjct:   143 EVEYFNEAGYIRAGALRNGEDPYIRNRFNQEASDALPSNRDIPDTRNPMCRTKKYREDLP 202

Query:    74 ATSVIITFHNEARSALLRSVV 94
              TSVIITFHNEARS LLR++V
Sbjct:   203 ETSVIITFHNEARSTLLRTIV 223




GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=ISS;IDA;NAS
GO:0009312 "oligosaccharide biosynthetic process" evidence=IDA
GO:0005795 "Golgi stack" evidence=NAS
ZFIN|ZDB-GENE-041111-110 galnt2 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDK8 GALNT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RG44 GALNT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P835 GALNT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P017 GALNT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BB48 GALNT2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310692 Galnt2 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1S6 GALNT2 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2), isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q10471 GALNT2 "Polypeptide N-acetylgalactosaminyltransferase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PB93GALT2_MOUSE2, ., 4, ., 1, ., 4, 10.58440.81910.1350yesN/A
Q10471GALT2_HUMAN2, ., 4, ., 1, ., 4, 10.51080.97870.1611yesN/A
Q6WV19GALT2_DROME2, ., 4, ., 1, ., 4, 10.61720.86170.1279yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query94
cd02510 299 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo 4e-06
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 14/18 (77%), Positives = 15/18 (83%)

Query: 76 SVIITFHNEARSALLRSV 93
          SVII FHNEA S LLR+V
Sbjct: 1  SVIIIFHNEALSTLLRTV 18


UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 94
KOG3737|consensus 603 99.89
KOG3738|consensus 559 99.86
KOG3736|consensus 578 99.85
>KOG3737|consensus Back     alignment and domain information
Probab=99.89  E-value=1.8e-24  Score=178.13  Aligned_cols=80  Identities=31%  Similarity=0.421  Sum_probs=74.1

Q ss_pred             ccCCCcccccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchhhhcccC
Q psy15010         15 VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVV   94 (94)
Q Consensus        15 w~~~~~~~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~StLLRTv~   94 (94)
                      .++-+++..|++++....+..-+++|||+++||+||++|+++|+|+..|+...|+.+||++||||+||||.||||+||||
T Consensus        97 PGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVH  176 (603)
T KOG3737|consen   97 PGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVH  176 (603)
T ss_pred             CCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEEEEEecCccHHHHHHHH
Confidence            56667777888888877777888999999999999999999999999999999999999999999999999999999997



>KOG3738|consensus Back     alignment and domain information
>KOG3736|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query94
2ffu_A 501 Crystal Structure Of Human Ppgalnact-2 Complexed Wi 2e-21
2d7i_A 570 Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac 4e-10
1xhb_A 472 The Crystal Structure Of Udp-Galnac: Polypeptide Al 4e-08
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp And Ea2 Length = 501 Back     alignment and structure

Iteration: 1

Score = 97.4 bits (241), Expect = 2e-21, Method: Composition-based stats. Identities = 48/87 (55%), Positives = 60/87 (68%), Gaps = 2/87 (2%) Query: 10 SNKVDVRY--FDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHA 67 S+ + VR+ F++ AY+ +R GQDPY NK+NQ SD +R +PDTRH C R Sbjct: 1 SDALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQ 60 Query: 68 LPRDLPATSVIITFHNEARSALLRSVV 94 DLPATSV+ITFHNEARSALLR+VV Sbjct: 61 WRVDLPATSVVITFHNEARSALLRTVV 87
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And Mn2+ Length = 570 Back     alignment and structure
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 Length = 472 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query94
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 8e-29
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 3e-18
2d7i_A 570 Polypeptide N-acetylgalactosaminyltransferase 10; 5e-18
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501 Back     alignment and structure
 Score =  106 bits (265), Expect = 8e-29
 Identities = 46/86 (53%), Positives = 58/86 (67%)

Query: 8  TNSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHA 67
          +++ KV    F++ AY+    +R GQDPY  NK+NQ  SD    +R +PDTRH  C R  
Sbjct: 1  SDALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQ 60

Query: 68 LPRDLPATSVIITFHNEARSALLRSV 93
             DLPATSV+ITFHNEARSALLR+V
Sbjct: 61 WRVDLPATSVVITFHNEARSALLRTV 86


>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472 Back     alignment and structure
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query94
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 99.81
2d7i_A 570 Polypeptide N-acetylgalactosaminyltransferase 10; 99.66
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 99.46
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 96.23
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Back     alignment and structure
Probab=99.81  E-value=1.3e-20  Score=148.41  Aligned_cols=85  Identities=54%  Similarity=0.831  Sum_probs=79.5

Q ss_pred             CCCCCCccCCCcccccCccccCCCCCCccCCCcchhhccccCCCCCCCCCCCcccccccCCCCCCCceEEEEeecCcchh
Q psy15010          9 NSNKVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSA   88 (94)
Q Consensus         9 ~~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~FN~~~Sd~I~l~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~St   88 (94)
                      .+.+++|..|+..++|++++.+..+++|++++||+++||+|+++|++||+|++.|+...|+.++|.+||||++|||++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~r~~~~~~~~~~~~~p~vSVIIp~yN~~~~~   81 (501)
T 2ffu_A            2 DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSA   81 (501)
T ss_dssp             ---CBCGGGSCHHHHHHTTCCCTTSCTTTTTSSCHHHHHHSCTTCCCCCCSCGGGGGCCCCSSCCCEEEEEEESSCCHHH
T ss_pred             CcccCCHhhCCcccccChhhhhhhhhhHHhcCcCHHHHcccCCCCcCCCCChhHhccccCCcCCCCEEEEEEeCcCcHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhccc
Q psy15010         89 LLRSV   93 (94)
Q Consensus        89 LLRTv   93 (94)
                      |.|+|
T Consensus        82 L~~~l   86 (501)
T 2ffu_A           82 LLRTV   86 (501)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875



>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Back     alignment and structure
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 94
d1xhba2 328 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa 8e-13
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
 Score = 60.0 bits (144), Expect = 8e-13
 Identities = 23/42 (54%), Positives = 27/42 (64%)

Query: 52 NRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 93
          NR +PD R   C     P +LP TSV+I FHNEA S LLR+V
Sbjct: 1  NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTV 42


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query94
d1xhba2 328 Polypeptide N-acetylgalactosaminyltransferase 1, N 99.37
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37  E-value=1.1e-13  Score=100.32  Aligned_cols=42  Identities=55%  Similarity=0.924  Sum_probs=40.5

Q ss_pred             CCCCCCCCCcccccccCCCCCCCceEEEEeecCcchhhhccc
Q psy15010         52 NRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV   93 (94)
Q Consensus        52 ~R~lpD~R~~~C~~~~y~~~LP~aSVII~FhNEa~StLLRTv   93 (94)
                      +|++||.|++.|+.+.|+.++|++||||++|||++++|.|+|
T Consensus         1 ~~~~~~~r~~~~~~~~~~~~~P~vSIIIp~yNe~~~~l~~~l   42 (328)
T d1xhba2           1 NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTV   42 (328)
T ss_dssp             CCCCCCCSCGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHH
T ss_pred             CCCCCCCCChhhhhccCCCCCCCEEEEEeccCCcHHHHHHHH
Confidence            699999999999999999999999999999999999999986