Psyllid ID: psy15026

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMII
Secondary Structure (PSIPRED)
cEEEEEEEccccccccEEEEEEEEEEEEccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEcEEEEEc
Coil and Loop (DISEMBL)
wrhvriqqngknasgqthylslsgfeiygTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGARVqrgldwkwrdqdgippgegnlkpiimii
Flexible Loop (DISEMBL)
wrhvriqqngknasgqthYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLiigarvqrgldwkwrdqdgippgegnlkpiiMII
Low Complexity Region (SEG)
WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMII
Disordered region (IsUnstruct)
****************THYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGI**************
Disordered Region (DISOPRED)
*RHVR**************LSLSGFEIYGTLTGVCE**********************************QRGLDWKWRDQDGIPPGEGNLKPIIMII
Disordered Region (DISEMBL)
**************GQTHYLSLSGFEIYGTLTGVCEDLGR**********KARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMII
Disordered Region (DISPRO)
WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMII
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVxxxxxxxxxxxxxxxxxxxxxVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMII
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q9ULT8	2610	E3 ubiquitin-protein liga	yes	N/A	0.928	0.034	0.739	2e-37
Q69ZR2	2618	E3 ubiquitin-protein liga	yes	N/A	0.928	0.034	0.728	4e-37
Q4U2R1	4836	E3 ubiquitin-protein liga	no	N/A	0.632	0.012	0.380	5e-06
O95714	4834	E3 ubiquitin-protein liga	no	N/A	0.591	0.011	0.388	1e-05
Q9VR91	4912	Probable E3 ubiquitin-pro	no	N/A	0.622	0.012	0.380	2e-05
Q9BVR0	1158	Putative HERC2-like prote	no	N/A	0.591	0.050	0.373	7e-05

>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3

 Score =  154 bits (388), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/92 (73%), Positives = 83/92 (90%), Gaps = 1/92 (1%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
            WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct: 1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query: 60   VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 1270 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1301

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. May be required for development of the head mesenchyme and neural tube closure.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2

 Score =  153 bits (386), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/92 (72%), Positives = 83/92 (90%), Gaps = 1/92 (1%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
            WRHVR++Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct: 1215 WRHVRLKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1274

Query: 60   VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 1275 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1306

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in development of the head mesenchyme and neural tube closure.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 30   TLTGVCEDLGRAAREAEASVRKARR---------LVRTQVMRHLIIGARVQRGLDWKWRD 80
            T   V +D+  +AR A A+V +  R         +   ++   + IG RV RG+DWKW D
Sbjct: 1825 TCDSVEDDMNASARGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGD 1884

Query: 81   QDGIPPGEGNL 91
            QDG PPG G +
Sbjct: 1885 QDGPPPGLGRV 1895

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 34   VCEDLGRAAREAEASVRKARR---------LVRTQVMRHLIIGARVQRGLDWKWRDQDGI 84
            V ED+  +A+ A A+V +  R         +   ++   + IG RV RG+DWKW DQDG 
Sbjct: 1828 VEEDMNASAQGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDGP 1887

Query: 85   PPGEGNL 91
            PPG G +
Sbjct: 1888 PPGLGRV 1894

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 10/71 (14%)

Query: 23   SGFEIYGTLTGVCED--LGRAAREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRD 80
            +G +++G L+ + ED  L + + +A+ S     +L++        IG R+ RG DWKW D
Sbjct: 1890 TGGQVHGELSILYEDSVLKQKSSKAQLSGPDLAKLMK--------IGTRIVRGADWKWGD 1941

Query: 81   QDGIPPGEGNL 91
            QDG PPGEG +
Sbjct: 1942 QDGNPPGEGRI 1952

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 34  VCEDLGRAAREAEASVRKARR---------LVRTQVMRHLIIGARVQRGLDWKWRDQDGI 84
           V ED+  +A+ A A+V +  R         +   ++   + IG RV RG+DWKW DQD  
Sbjct: 556 VEEDMNASAQGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDRP 615

Query: 85  PPGEGNL 91
           PPG G +
Sbjct: 616 PPGLGRV 622

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
345495044	2608	PREDICTED: E3 ubiquitin-protein ligase H	0.928	0.034	0.780	8e-41
345495040	2621	PREDICTED: E3 ubiquitin-protein ligase H	0.928	0.034	0.780	8e-41
345495042	2506	PREDICTED: E3 ubiquitin-protein ligase H	0.928	0.036	0.780	1e-40
383847577	2534	PREDICTED: E3 ubiquitin-protein ligase H	0.928	0.035	0.791	2e-40
340712868	2541	PREDICTED: LOW QUALITY PROTEIN: e3 ubiqu	0.928	0.035	0.791	3e-40
380021584	2537	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.928	0.035	0.780	1e-39
307166390	2551	E3 ubiquitin-protein ligase HECTD1 [Camp	0.928	0.035	0.758	3e-39
307197829	2600	E3 ubiquitin-protein ligase HECTD1 [Harp	0.928	0.035	0.758	4e-39
322780593	2000	hypothetical protein SINV_12881 [Solenop	0.928	0.045	0.758	4e-39
332025101	1838	E3 ubiquitin-protein ligase HECTD1 [Acro	0.928	0.049	0.747	2e-38

>gi|345495044|ref|XP_001605880.2| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis]

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 71/91 (78%), Positives = 84/91 (92%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VR+ RRL+R+QV
Sbjct: 1235 WRHLRLQQTGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEACVRRQRRLIRSQV 1294

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            +RHL+ GARV RGLDWKWRDQDG+PPGEG +
Sbjct: 1295 LRHLVAGARVARGLDWKWRDQDGVPPGEGTV 1325

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495040|ref|XP_003427422.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis]

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 71/91 (78%), Positives = 84/91 (92%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VR+ RRL+R+QV
Sbjct: 1248 WRHLRLQQTGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEACVRRQRRLIRSQV 1307

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            +RHL+ GARV RGLDWKWRDQDG+PPGEG +
Sbjct: 1308 LRHLVAGARVARGLDWKWRDQDGVPPGEGTV 1338

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495042|ref|XP_003427423.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Nasonia vitripennis]

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/91 (78%), Positives = 84/91 (92%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VR+ RRL+R+QV
Sbjct: 1248 WRHLRLQQTGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEACVRRQRRLIRSQV 1307

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            +RHL+ GARV RGLDWKWRDQDG+PPGEG +
Sbjct: 1308 LRHLVAGARVARGLDWKWRDQDGVPPGEGTV 1338

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847577|ref|XP_003699429.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1 [Megachile rotundata]

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/91 (79%), Positives = 84/91 (92%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAAREAEA VRK RRL+++QV
Sbjct: 1212 WRHLRLQQIGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAREAEAGVRKQRRLIKSQV 1271

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            +RHL+ GARV RGLDWKWRDQDG+PPGEG +
Sbjct: 1272 LRHLVAGARVARGLDWKWRDQDGVPPGEGTV 1302

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712868|ref|XP_003394975.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase HECTD1-like [Bombus terrestris]

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAAREAEA VRK RRL++ QV
Sbjct: 1212 WRHLRLQQIGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAREAEAGVRKQRRLIKAQV 1271

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            +RHL+ GARV RGLDWKWRDQDG+PPGEG +
Sbjct: 1272 LRHLVAGARVARGLDWKWRDQDGVPPGEGTV 1302

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021584|ref|XP_003694642.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HECTD1-like [Apis florea]

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/91 (78%), Positives = 82/91 (90%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHY S+SGFE+YG +TGVCEDLGRAAREAEA VRK RRL++ QV
Sbjct: 1212 WRHLRLQQIGKNASGQTHYXSVSGFEVYGEVTGVCEDLGRAAREAEAGVRKQRRLIKAQV 1271

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            +RHL+ GARV RGLDWKWRDQDG+PPGEG +
Sbjct: 1272 LRHLVAGARVARGLDWKWRDQDGVPPGEGTV 1302

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166390|gb|EFN60527.1| E3 ubiquitin-protein ligase HECTD1 [Camponotus floridanus]

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/91 (75%), Positives = 82/91 (90%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VRK RR ++TQV
Sbjct: 1215 WRHLRLQQIGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEAGVRKQRRFIKTQV 1274

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            ++HL+ G RV RGLDWKWRDQDG+PPGEG +
Sbjct: 1275 LKHLVAGVRVARGLDWKWRDQDGVPPGEGTV 1305

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197829|gb|EFN78940.1| E3 ubiquitin-protein ligase HECTD1 [Harpegnathos saltator]

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/91 (75%), Positives = 82/91 (90%)

Query: 1    WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
            WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VRK RR ++TQV
Sbjct: 1260 WRHLRLQQIGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEAGVRKQRRFIKTQV 1319

Query: 61   MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            ++HL+ G RV RGLDWKWRDQDG+PPGEG +
Sbjct: 1320 LKHLVAGVRVARGLDWKWRDQDGVPPGEGTV 1350

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322780593|gb|EFZ09977.1| hypothetical protein SINV_12881 [Solenopsis invicta]

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/91 (75%), Positives = 82/91 (90%)

Query: 1   WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
           WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VRK RR ++TQV
Sbjct: 676 WRHLRLQQIGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEAGVRKQRRFIKTQV 735

Query: 61  MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
           ++HL+ G RV RGLDWKWRDQDG+PPGEG +
Sbjct: 736 LKHLVAGVRVSRGLDWKWRDQDGVPPGEGTV 766

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025101|gb|EGI65282.1| E3 ubiquitin-protein ligase HECTD1 [Acromyrmex echinatior]

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/91 (74%), Positives = 81/91 (89%)

Query: 1   WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQV 60
           WRH+R+QQ GKNASGQTHYLS+SGFE+YG +TGVCEDLGRAA+EAEA VRK RR ++ QV
Sbjct: 505 WRHLRLQQIGKNASGQTHYLSVSGFEVYGEVTGVCEDLGRAAKEAEAGVRKQRRFIKMQV 564

Query: 61  MRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
           ++HL+ G RV RGLDWKWRDQDG+PPGEG +
Sbjct: 565 LKHLVAGVRVARGLDWKWRDQDGVPPGEGTV 595

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
UNIPROTKB|H0YJV8	185	HECTD1 "E3 ubiquitin-protein l	0.928	0.491	0.739	1.3e-34
UNIPROTKB|H0YJP0	1465	HECTD1 "E3 ubiquitin-protein l	0.928	0.062	0.739	3.9e-33
UNIPROTKB|F1SHF6	2607	HECTD1 "Uncharacterized protei	0.928	0.034	0.739	8.5e-33
UNIPROTKB|E2RGH9	2609	HECTD1 "Uncharacterized protei	0.928	0.034	0.739	8.5e-33
UNIPROTKB|E1BLD1	2610	HECTD1 "Uncharacterized protei	0.928	0.034	0.739	8.5e-33
UNIPROTKB|Q9ULT8	2610	HECTD1 "E3 ubiquitin-protein l	0.928	0.034	0.739	8.5e-33
UNIPROTKB|E1C1E6	2576	HECTD1 "Uncharacterized protei	0.928	0.035	0.728	1.4e-32
UNIPROTKB|E1C040	2610	HECTD1 "Uncharacterized protei	0.928	0.034	0.728	1.4e-32
RGD|1561653	2610	Hectd1 "HECT domain containing	0.928	0.034	0.728	1.4e-32
MGI|MGI:2384768	2618	Hectd1 "HECT domain containing	0.928	0.034	0.728	1.4e-32

UNIPROTKB|H0YJV8 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 68/92 (73%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:    41 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 100

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:   101 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 132

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H0YJP0 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 3.9e-33, P = 3.9e-33
 Identities = 68/92 (73%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:   684 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 743

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:   744 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 775

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1SHF6 HECTD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 375 (137.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/92 (73%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:  1270 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1301

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2RGH9 HECTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 375 (137.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/92 (73%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1209 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1268

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:  1269 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1300

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E1BLD1 HECTD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 375 (137.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/92 (73%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:  1270 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1301

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9ULT8 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 375 (137.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/92 (73%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:  1270 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1301

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1C1E6 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 373 (136.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/92 (72%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RG+DWKWRDQDG P GEG +
Sbjct:  1270 VLKYMVPGARVIRGIDWKWRDQDGSPQGEGTV 1301

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C040 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 373 (136.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/92 (72%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RG+DWKWRDQDG P GEG +
Sbjct:  1270 VLKYMVPGARVIRGIDWKWRDQDGSPQGEGTV 1301

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

RGD|1561653 Hectd1 "HECT domain containing E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/92 (72%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVR++Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1210 WRHVRLKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:  1270 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1301

GO:0001843 "neural tube closure" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2384768 Hectd1 "HECT domain containing 1" [Mus musculus (taxid:10090)]

 Score = 373 (136.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/92 (72%), Positives = 83/92 (90%)

Query:     1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
             WRHVR++Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct:  1215 WRHVRLKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1274

Query:    60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
             V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct:  1275 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1306

GO:0001843 "neural tube closure" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ULT8	HECD1_HUMAN	6, ., 3, ., 2, ., -	0.7391	0.9285	0.0348	yes	N/A
Q69ZR2	HECD1_MOUSE	6, ., 3, ., 2, ., -	0.7282	0.9285	0.0347	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	98
pfam06701	63	pfam06701, MIB_HERC2, Mib_herc2	5e-08

>gnl|CDD|115363 pfam06701, MIB_HERC2, Mib_herc2

 Score = 45.1 bits (107), Expect = 5e-08
 Identities = 17/23 (73%), Positives = 18/23 (78%)

Query: 67 GARVQRGLDWKWRDQDGIPPGEG 89
          GARV RG+DWKW DQDG   GEG
Sbjct: 1  GARVVRGVDWKWGDQDGGEGGEG 23

Named "mib/herc2 domain" in. Usually the protein also contains an E3 ligase domain (either Ring or Hect). Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF06701	68	MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a	99.55
KOG4582|consensus	278		96.38

>PF06701 MIB_HERC2: Mib_herc2; InterPro: IPR010606 Mib is a RING ubiquitin ligase in the Notch pathway

Probab=99.55  E-value=1.8e-15  Score=99.42  Aligned_cols=28  Identities=57%  Similarity=0.955  Sum_probs=20.5

Q ss_pred             cceEeeCCCCcccCCCCCCCCCCeeeee
Q psy15026         67 GARVQRGLDWKWRDQDGIPPGEGNLKPI   94 (98)
Q Consensus        67 G~RVvRG~DWkW~dQDGg~g~~GtV~~~   94 (98)
                      |+||||||||+|+||||+++++|||++|
T Consensus         1 G~rVvRGpDW~WgdQDGG~g~~GtV~~i   28 (68)
T PF06701_consen    1 GARVVRGPDWKWGDQDGGEGHVGTVVSI   28 (68)
T ss_dssp             TSEEEE-TT--STTTTSSTT--EEE-S-
T ss_pred             CCeeeeCcCCCccCcCCCCCcceEEEec
Confidence            7999999999999999999999999986

Mib interacts with the intracellular domain of Delta to promote its ubiquitylation and internalisation. Cell transplantation studies suggest that mib function is essential in the signalling cell for efficient activation of Notch in neighbouring cells. This domain has been named 'mib/herc2 domain' in []and usually the protein also contains an E3 ligase domain (either Ring or Hect).; GO: 0004842 ubiquitin-protein ligase activity, 0046872 metal ion binding, 0016567 protein ubiquitination; PDB: 2DK3_A 3DKM_A.

>KOG4582|consensus

Probab=96.38  E-value=0.00071  Score=53.67  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=43.0

Q ss_pred             hhhhHHHHhhhhHHHHhhhhccccceEeeCCCCcccCCCCCCCCCCeeeeeE
Q psy15026         44 EAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPII   95 (98)
Q Consensus        44 ~ae~~l~~~R~~~r~~~~~~i~~G~RVvRG~DWkW~dQDGg~g~~GtV~~~i   95 (98)
                      .+..+++..++.++......++++..++||++|+|+++++++++.|++.++-
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (278)
T KOG4582|consen  204 FSGYVMLSSPPNPVNLNKRPIFVGHSKVRGNDWYWTSLGGGEGRIGRVNEIV  255 (278)
T ss_pred             CCcceeccCCCCcccccccccccccccccccCCccccccCCCCCCccccccc
Confidence            3344556667777766678999999999999999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2dk3_A	86	Solution Structure Of Mib-Herc2 Domain In Hect Doma		2e-09
3dkm_A	89	Crystal Structure Of The Hectd1 Cph Domain Length =		8e-08

>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain Containing Protein 1 Length = 86

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 31/36 (86%)
Query: 56 VRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
          VR+QV+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 8  VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 43

>pdb|3DKM|A Chain A, Crystal Structure Of The Hectd1 Cph Domain Length = 89

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 51 KARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            R  +  Q +++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 9  SGRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTV 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
3dkm_A	89	E3 ubiquitin-protein ligase hectd1; UBL conjugatio	7e-13
2dk3_A	86	E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma	8e-12

>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} Length = 89

 Score = 58.0 bits (140), Expect = 7e-13
 Identities = 22/40 (55%), Positives = 28/40 (70%)

Query: 50 RKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEG 89
             R  +  Q +++++ GARV RGLDWKWRDQDG P GEG
Sbjct: 8  SSGRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEG 47

>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1 Length = 86

 Score = 55.3 bits (133), Expect = 8e-12
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 51 KARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEG 89
               VR+QV+++++ GARV RGLDWKWRDQDG P GEG
Sbjct: 3  SGSSGVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEG 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3dkm_A	89	E3 ubiquitin-protein ligase hectd1; UBL conjugatio	99.7
2dk3_A	86	E3 ubiquitin-protein ligase hectd1; MIB-HERC2 doma	99.65
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	92.23
3ggl_A	169	Putative chitobiase; X-RAY, structure genomics, NE	89.99
3cqo_A	293	FBP32; F-lectin, fucolectin, sugar binding protein	86.97
2jda_A	145	Yecbm32; hypothetical protein, carbohydrate- bindi	85.81

>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1

Probab=99.70  E-value=3.7e-18  Score=117.00  Aligned_cols=42  Identities=52%  Similarity=0.940  Sum_probs=39.6

Q ss_pred             hhhHHHHhhhhccccceEeeCCCCcccCCCCCCCCCCeeeee
Q psy15026         53 RRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPI   94 (98)
Q Consensus        53 R~~~r~~~~~~i~~G~RVvRG~DWkW~dQDGg~g~~GtV~~~   94 (98)
                      |.+++.|++++|++|+||||||||+|+||||++|++|||+++
T Consensus        11 ~~~~~~q~lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~   52 (89)
T 3dkm_A           11 RENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGE   52 (89)
T ss_dssp             CCCHHHHHHHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSC
T ss_pred             hHHHHHHHhhccccCcEEEeCCCCcccccCCCCCcccEEeEe
Confidence            667899999999999999999999999999999999999874

>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1

Probab=99.65  E-value=2.2e-17  Score=112.63  Aligned_cols=39  Identities=62%  Similarity=1.136  Sum_probs=35.9

Q ss_pred             HHHHhhhhccccceEeeCCCCcccCCCCCCCCCCeeeee
Q psy15026         56 VRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPI   94 (98)
Q Consensus        56 ~r~~~~~~i~~G~RVvRG~DWkW~dQDGg~g~~GtV~~~   94 (98)
                      +|.++++.|++|+||||||||||+||||++|++|||+++
T Consensus         8 ~r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~   46 (86)
T 2dk3_A            8 VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGE   46 (86)
T ss_dssp             CSSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSC
T ss_pred             hhhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEE
Confidence            456667999999999999999999999999999999975

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=92.23  E-value=0.15  Score=34.22  Aligned_cols=31  Identities=13%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             eeEEEeecCCCCCCceeeEEeeceEEEeccchh
Q psy15026          2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGV   34 (98)
Q Consensus         2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v~~~   34 (98)
                      ||+||.-......+  .|++|+-|+|||...+.
T Consensus       122 RYVRi~~~~~~~~~--~~~si~Ei~vy~~~~~~  152 (159)
T 3f2z_A          122 RYIKLVIPDGVGNG--TVAAIRELDVRGTVVNL  152 (159)
T ss_dssp             EEEEEEECSSSSCC--SCCEEEEEEEEEEECC-
T ss_pred             EEEEEEEEeccCCC--ceEEEEEEEEEcCCCCc
Confidence            89999887654322  48999999999987665

>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}

Probab=89.99  E-value=0.32  Score=33.13  Aligned_cols=31  Identities=13%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             eeEEEeecCCCCCCceeeEEeeceEEEeccchh
Q psy15026          2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGV   34 (98)
Q Consensus         2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v~~~   34 (98)
                      ||+||.-...+.. . .|++|+-|+|||.-.+.
T Consensus       132 RYVRi~~~~~~~~-~-~~~si~Ei~vy~~~~~~  162 (169)
T 3ggl_A          132 RYIRLTIPDDGGN-S-TVAAIRELDVKGTIINL  162 (169)
T ss_dssp             EEEEEEECSSSSC-C-SCCEEEEEEEEEEECC-
T ss_pred             EEEEEEEEeCCCC-C-ceEEEEEEEEEcCCCCc
Confidence            8999988765432 2 59999999999986554

>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}

Probab=86.97  E-value=0.31  Score=36.00  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             eeEEEeecCCCCCCceeeEEeeceEEEecc
Q psy15026          2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTL   31 (98)
Q Consensus         2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v   31 (98)
                      ||+||.-.|.+     .+|+|+-||+||.-
T Consensus       123 RYVrv~~~~~~-----~~~sl~EveVyg~~  147 (293)
T 3cqo_A          123 RYVTVLLPGTN-----KVLTLCEVEVHGYR  147 (293)
T ss_dssp             EEEEEECCSSS-----BCCCCSEEEEEEEE
T ss_pred             eEEEEEecCCC-----cceEEEEEEEEecc
Confidence            89999987653     38999999999973

>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A

Probab=85.81  E-value=0.59  Score=29.96  Aligned_cols=27  Identities=7%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             eeEEEeecCCCCCCceeeEEeeceEEEecc
Q psy15026          2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTL   31 (98)
Q Consensus         2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v   31 (98)
                      ||+||.-.+.+..   .+++|.-|||||.-
T Consensus       111 ryvRi~~~~~~~~---~~~~i~Ei~v~g~~  137 (145)
T 2jda_A          111 KYIKLDTFGTDVN---NWSAINEIAINSAA  137 (145)
T ss_dssp             EEEEEEEEEESSS---SEEEEEEEEESCCC
T ss_pred             EEEEEEEECCCCC---cEeEEEEEEEECCC
Confidence            8999998876542   37899999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d2dk3a1	73	b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hec	4e-12

>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (131), Expect = 4e-12
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 56 VRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEG 89
          VR+QV+++++ GARV RGLDWKWRDQDG P GEG
Sbjct: 1  VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2dk3a1	73	E3 ubiquitin-protein ligase hectd1 {Human (Homo sa	99.72

>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Mib/herc2 domain-like
family: Mib/herc2 domain
domain: E3 ubiquitin-protein ligase hectd1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-19  Score=116.85  Aligned_cols=39  Identities=59%  Similarity=1.130  Sum_probs=36.1

Q ss_pred             HHHhhhhccccceEeeCCCCcccCCCCCCCCCCeeeeeE
Q psy15026         57 RTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPII   95 (98)
Q Consensus        57 r~~~~~~i~~G~RVvRG~DWkW~dQDGg~g~~GtV~~~i   95 (98)
                      +.+++++|++|+||+|||||||+||||++|++|||++++
T Consensus         2 ~~~~~k~i~~G~RVvRG~DWkW~dQDGG~g~~GtV~~~~   40 (73)
T d2dk3a1           2 RSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGEL   40 (73)
T ss_dssp             SSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCC
T ss_pred             hhhhhccccCCCeEEECCCCCeeCcCCCCCccceEeeeC
Confidence            567789999999999999999999999999999999754